LOCUS       DAXIFS010000001        54089 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.001, whole genome shotgun sequence.
ACCESSION   DAXIFS010000001 DAXIFS010000000
VERSION     DAXIFS010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 54089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 54089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..54089
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.001"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            6..81
                     /locus_tag="ACFOCA_000001"
     tRNA            6..81
                     /locus_tag="ACFOCA_000001"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Trp,seq:cca)
     gene            196..474
                     /gene="secE"
                     /locus_tag="ACFOCA_000002"
     CDS             196..474
                     /gene="secE"
                     /locus_tag="ACFOCA_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFC6986786.1"
                     /translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
                     KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
     gene            476..1012
                     /gene="nusG"
                     /locus_tag="ACFOCA_000003"
     CDS             476..1012
                     /gene="nusG"
                     /locus_tag="ACFOCA_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFC6986787.1"
                     /translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
                     VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
                     EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
                     FGRETPVELEFSQVEKIN"
     gene            1113..1547
                     /gene="rplK"
                     /locus_tag="ACFOCA_000004"
     CDS             1113..1547
                     /gene="rplK"
                     /locus_tag="ACFOCA_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFC6986788.1"
                     /translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
                     ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
                     RAQLEEIAKTKEPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
     gene            1547..2242
                     /gene="rplA"
                     /locus_tag="ACFOCA_000005"
     CDS             1547..2242
                     /gene="rplA"
                     /locus_tag="ACFOCA_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFC6986789.1"
                     /translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
                     SFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAA
                     EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
                     GLGIRVDTSSVNN"
     gene            2472..2972
                     /gene="rplJ"
                     /locus_tag="ACFOCA_000006"
     CDS             2472..2972
                     /gene="rplJ"
                     /locus_tag="ACFOCA_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFC6986790.1"
                     /translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
                     ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
                     DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
                     AGEEAA"
     gene            3030..3401
                     /gene="rplL"
                     /locus_tag="ACFOCA_000007"
     CDS             3030..3401
                     /gene="rplL"
                     /locus_tag="ACFOCA_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFC6986791.1"
                     /translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
                     GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
                     KAEAEDIQKQLEEAGAKVEIK"
     gene            3592..7770
                     /gene="rpoB"
                     /locus_tag="ACFOCA_000008"
     CDS             3592..7770
                     /gene="rpoB"
                     /locus_tag="ACFOCA_000008"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFC6986792.1"
                     /translation="MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENA
                     FDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRA
                     RIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF
                     FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALG
                     YNNEQILDIFYDKETFYLSSNGVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITA
                     KNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDING
                     VKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNR
                     LFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVE
                     DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQ
                     AESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDG
                     KVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDV
                     ATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSA
                     TAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAV
                     KAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYT
                     SIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKV
                     TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRA
                     QSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLA
                     GLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQ
                     KMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPS
                     RMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDSLTD
                     EEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSKTQITL
                     YDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVK
                     EIRSLGLDIDLERY"
     gene            7927..12102
                     /gene="rpoC"
                     /locus_tag="ACFOCA_000009"
     CDS             7927..12102
                     /gene="rpoC"
                     /locus_tag="ACFOCA_000009"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFC6986793.1"
                     /translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
                     TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
                     RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
                     LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
                     IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
                     GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
                     ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
                     LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
                     VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
                     PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
                     HLMYTGFGFAAKGGISIAVDDMEIPKEKVALLAEANAEVKEIEDQYRQGLVTNGERYN
                     KVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQESFNSIYMMADSGARGSAAQIK
                     QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
                     TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRERILGRVTASDVVDPSSG
                     ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
                     EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
                     KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
                     ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
                     GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
                     ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQILVHDG
                     QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
                     MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
                     SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
                     VEQETAETQVTDE"
     gene            12360..12731
                     /gene="rpsL"
                     /locus_tag="ACFOCA_000010"
     CDS             12360..12731
                     /gene="rpsL"
                     /locus_tag="ACFOCA_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFC6986794.1"
                     /translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTAGVKDRKQARSKYGAKRPK"
     gene            12849..13319
                     /gene="rpsG"
                     /locus_tag="ACFOCA_000011"
     CDS             12849..13319
                     /gene="rpsG"
                     /locus_tag="ACFOCA_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFC6986795.1"
                     /translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
                     GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
                     WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
     gene            13338..15443
                     /gene="fusA"
                     /locus_tag="ACFOCA_000012"
     CDS             13338..15443
                     /gene="fusA"
                     /locus_tag="ACFOCA_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFC6986796.1"
                     /translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
                     DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
                     RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEADKGTTFTYGDIPAELVETAEEW
                     RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
                     RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
                     IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
                     GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
                     ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKAVKAEYKHAKQSG
                     GKGQYGHVVIEMEPMEPGGEGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
                     VVDVRIRLVFGSYHDVDSSQLAFELAASQAFKEGMRQASPALLEPIMAVEVETPEEYM
                     GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
                     KYSEAPAHIAAAVTEARKG"
     gene            15531..16715
                     /gene="tuf"
                     /locus_tag="ACFOCA_000013"
     CDS             15531..16715
                     /gene="tuf"
                     /locus_tag="ACFOCA_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011793521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFC6986797.1"
                     /translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFGGAA
                     KAYDQIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSS
                     YDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVG
                     VLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFR
                     TTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSV
                     IA"
     gene            16733..17044
                     /gene="rpsJ"
                     /locus_tag="ACFOCA_000014"
     CDS             16733..17044
                     /gene="rpsJ"
                     /locus_tag="ACFOCA_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFC6986798.1"
                     /translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
                     KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLSAGVDVEIKV
                     Q"
     gene            17165..17296
                     /locus_tag="ACFOCA_000015"
     CDS             17165..17296
                     /locus_tag="ACFOCA_000015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986799.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQRYDHLCR"
     gene            17271..17594
                     /locus_tag="ACFOCA_000016"
                     /pseudo
     CDS             17271..17594
                     /locus_tag="ACFOCA_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573867.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            18048..18692
                     /gene="rplC"
                     /locus_tag="ACFOCA_000017"
     CDS             18048..18692
                     /gene="rplC"
                     /locus_tag="ACFOCA_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFC6986800.1"
                     /translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
                     GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
                     MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
                     GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
     gene            18692..19312
                     /gene="rplD"
                     /locus_tag="ACFOCA_000018"
     CDS             18692..19312
                     /gene="rplD"
                     /locus_tag="ACFOCA_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFC6986801.1"
                     /translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
                     SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
                     RKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
                     NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
     gene            19309..19623
                     /gene="rplW"
                     /locus_tag="ACFOCA_000019"
     CDS             19309..19623
                     /gene="rplW"
                     /locus_tag="ACFOCA_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFC6986802.1"
                     /translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLANAAKPEIKA
                     AVELLFGVQVASVTTVTTKGKTKRFGRTLGRRSDVKKAYVSLAAGQELDLEAAAAAAD
                     KE"
     gene            19629..20462
                     /gene="rplB"
                     /locus_tag="ACFOCA_000020"
     CDS             19629..20462
                     /gene="rplB"
                     /locus_tag="ACFOCA_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFC6986803.1"
                     /translation="MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRN
                     NNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
                     YIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
                     SAVLLAKEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
                     TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
                     G"
     gene            20469..20747
                     /gene="rpsS"
                     /locus_tag="ACFOCA_000021"
     CDS             20469..20747
                     /gene="rpsS"
                     /locus_tag="ACFOCA_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFC6986804.1"
                     /translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
                     IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
     gene            20756..21085
                     /gene="rplV"
                     /locus_tag="ACFOCA_000022"
     CDS             20756..21085
                     /gene="rplV"
                     /locus_tag="ACFOCA_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFC6986805.1"
                     /translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
                     ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
                     INVTVGN"
     gene            21095..21787
                     /gene="rpsC"
                     /locus_tag="ACFOCA_000023"
     CDS             21095..21787
                     /gene="rpsC"
                     /locus_tag="ACFOCA_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFC6986806.1"
                     /translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
                     QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
                     IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
                     DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
                     QRKAGRRNAAAN"
     gene            21771..22187
                     /gene="rplP"
                     /locus_tag="ACFOCA_000024"
     CDS             21771..22187
                     /gene="rplP"
                     /locus_tag="ACFOCA_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFC6986807.1"
                     /translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
                     RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
                     LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
     gene            22187..22378
                     /gene="rpmC"
                     /locus_tag="ACFOCA_000025"
     CDS             22187..22378
                     /gene="rpmC"
                     /locus_tag="ACFOCA_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFC6986808.1"
                     /translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
                     RVRRDIARIKTVLTEKGAK"
     gene            22378..22641
                     /gene="rpsQ"
                     /locus_tag="ACFOCA_000026"
     CDS             22378..22641
                     /gene="rpsQ"
                     /locus_tag="ACFOCA_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFC6986809.1"
                     /translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
                     KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
     gene            22863..23231
                     /gene="rplN"
                     /locus_tag="ACFOCA_000027"
     CDS             22863..23231
                     /gene="rplN"
                     /locus_tag="ACFOCA_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFC6986810.1"
                     /translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
                     DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
                     TRELRTERFMKIVSLAPEVL"
     gene            23243..23566
                     /gene="rplX"
                     /locus_tag="ACFOCA_000028"
     CDS             23243..23566
                     /gene="rplX"
                     /locus_tag="ACFOCA_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFC6986811.1"
                     /translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
                     KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
                     SIIGA"
     gene            23576..24115
                     /gene="rplE"
                     /locus_tag="ACFOCA_000029"
     CDS             23576..24115
                     /gene="rplE"
                     /locus_tag="ACFOCA_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFC6986812.1"
                     /translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAV
                     ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
                     LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
                     KTDEEAKALLSLFKFPFKG"
     gene            24118..24423
                     /gene="rpsN"
                     /locus_tag="ACFOCA_000030"
     CDS             24118..24423
                     /gene="rpsN"
                     /locus_tag="ACFOCA_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HFC6986813.1"
                     /translation="MAKKALINRNLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
                     RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
     gene            24439..24831
                     /gene="rpsH"
                     /locus_tag="ACFOCA_000031"
     CDS             24439..24831
                     /gene="rpsH"
                     /locus_tag="ACFOCA_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFC6986814.1"
                     /translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
                     YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
                     IVSTSKGVMTDRKARSQGVGGELLCIVA"
     gene            24845..25378
                     /gene="rplF"
                     /locus_tag="ACFOCA_000032"
     CDS             24845..25378
                     /gene="rplF"
                     /locus_tag="ACFOCA_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFC6986815.1"
                     /translation="MSRVAKNPVTVPAGVEVKFGTEALVIKGKNGELSFPLHSDVAIE
                     FNDGKLAFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
                     LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRAFRAPEPYKGK
                     GVRYVGEVVVMKEAKKK"
     gene            25392..25745
                     /gene="rplR"
                     /locus_tag="ACFOCA_000033"
     CDS             25392..25745
                     /gene="rplR"
                     /locus_tag="ACFOCA_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFC6986816.1"
                     /translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
                     DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
                     VKALAEAARENGLSF"
     gene            25764..26282
                     /gene="rpsE"
                     /locus_tag="ACFOCA_000034"
     CDS             25764..26282
                     /gene="rpsE"
                     /locus_tag="ACFOCA_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFC6986817.1"
                     /translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
                     DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
                     EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
                     LTVEDILGVNHG"
     gene            26275..26460
                     /gene="rpmD"
                     /locus_tag="ACFOCA_000035"
     CDS             26275..26460
                     /gene="rpmD"
                     /locus_tag="ACFOCA_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HFC6986818.1"
                     /translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTP
                     ENRGMINKISYLLKVES"
     gene            26462..26896
                     /gene="rplO"
                     /locus_tag="ACFOCA_000036"
     CDS             26462..26896
                     /gene="rplO"
                     /locus_tag="ACFOCA_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFC6986819.1"
                     /translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
                     FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
                     STVSNVKVIASGEISKAVALKGIKVTKGARAAIEAVGGKIEM"
     gene            26908..28218
                     /gene="secY"
                     /locus_tag="ACFOCA_000037"
     CDS             26908..28218
                     /gene="secY"
                     /locus_tag="ACFOCA_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFC6986820.1"
                     /translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
                     ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
                     KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
                     TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
                     GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
                     LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
                     AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
                     LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
     gene            28223..28441
                     /gene="infA"
                     /locus_tag="ACFOCA_000038"
     CDS             28223..28441
                     /gene="infA"
                     /locus_tag="ACFOCA_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFC6986821.1"
                     /translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
                     IRISPGDKVTVELTPYDLTRARIVFRAR"
     gene            28462..28575
                     /gene="rpmJ"
                     /locus_tag="ACFOCA_000039"
     CDS             28462..28575
                     /gene="rpmJ"
                     /locus_tag="ACFOCA_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFC6986822.1"
                     /translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
     gene            28641..29003
                     /gene="rpsM"
                     /locus_tag="ACFOCA_000040"
     CDS             28641..29003
                     /gene="rpsM"
                     /locus_tag="ACFOCA_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFC6986823.1"
                     /translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
                     AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
                     RTNARTRKGPRKAIAGKK"
     gene            29023..29418
                     /gene="rpsK"
                     /locus_tag="ACFOCA_000041"
     CDS             29023..29418
                     /gene="rpsK"
                     /locus_tag="ACFOCA_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFC6986824.1"
                     /translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
                     SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
                     NALGFKITSITDVTPLPHNGCRPPKKRRI"
     gene            29438..30058
                     /gene="rpsD"
                     /locus_tag="ACFOCA_000042"
     CDS             29438..30058
                     /gene="rpsD"
                     /locus_tag="ACFOCA_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFC6986825.1"
                     /translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
                     KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
                     YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
                     LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
     gene            30084..31070
                     /gene="rpoA"
                     /locus_tag="ACFOCA_000043"
     CDS             30084..31070
                     /gene="rpoA"
                     /locus_tag="ACFOCA_000043"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFC6986826.1"
                     /translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
                     RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
                     KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
                     RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
                     AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
                     IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
     gene            31094..31462
                     /gene="rplQ"
                     /locus_tag="ACFOCA_000044"
     CDS             31094..31462
                     /gene="rplQ"
                     /locus_tag="ACFOCA_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFC6986827.1"
                     /translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHETIVTTLPKAKEL
                     RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
                     RKGDNAPLALVELVDKPAAE"
     gene            31609..32322
                     /gene="minC"
                     /locus_tag="ACFOCA_000045"
     CDS             31609..32322
                     /gene="minC"
                     /locus_tag="ACFOCA_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA];
                     GO_process: GO:1901891 - regulation of cell septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HFC6986828.1"
                     /translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
                     SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
                     SHSENVKELGQVEVQNTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
                     IADGNIHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPNHLHKQ
                     PVQILLQDNRLVISAIGSE"
     gene            32350..33165
                     /gene="minD"
                     /locus_tag="ACFOCA_000046"
     CDS             32350..33165
                     /gene="minD"
                     /locus_tag="ACFOCA_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HFC6986829.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
                     EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
                     ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
                     LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
     gene            33169..33432
                     /gene="minE"
                     /locus_tag="ACFOCA_000047"
     CDS             33169..33432
                     /gene="minE"
                     /locus_tag="ACFOCA_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HFC6986830.1"
                     /translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
                     KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
     gene            33436..34356
                     /gene="oxyR"
                     /locus_tag="ACFOCA_000048"
     CDS             33436..34356
                     /gene="oxyR"
                     /locus_tag="ACFOCA_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator OxyR"
                     /protein_id="HFC6986831.1"
                     /translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
                     VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
                     PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
                     YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
                     GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
                     RRNFVRPKALSAMKAAIMQSQLHGVSFIRD"
     gene            complement(34353..34544)
                     /locus_tag="ACFOCA_000049"
     CDS             complement(34353..34544)
                     /locus_tag="ACFOCA_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986832.1"
                     /translation="MLIHYTWHCIGTDENIHSDAKVEYLQDGSFRGDAILKIDDDGNI
                     LAYRVVGSGKWRFENNACA"
     gene            complement(34686..37523)
                     /locus_tag="ACFOCA_000050"
     CDS             complement(34686..37523)
                     /locus_tag="ACFOCA_000050"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFC6986833.1"
                     /translation="MLDKYSPAEIESKHYQNWEEQGYFQPDMDLTKPSFSIQLPPPNV
                     TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
                     DLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLY
                     EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
                     ETLLGDVAVAINPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAH
                     DFNDYEVGKRHDTRLVNVFDLEAKVLANAEVFNFKGEAQPSFALPEKYAGLDRFAARK
                     QMVADLQEQGFLVEIKAHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
                     GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDNEG
                     NVYVARNQEEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
                     LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
                     IDGIDLEKLLVKRTTGLRKPETAPKVEEASRKLFPEGIPSMGADALRFTMASYASLGR
                     SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATATEPRGYSFPDMWIVDRL
                     NQTIEQVTQAYETYRFDLAAETLYSFMWNDYCDWYLELAKVQLQTGCASRQRATRHTL
                     LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPEADGGDIVQTAFEQ
                     MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESTDDLADYLKYLPMMTRLIEAQQVAAL
                     PESEDAPVAVCNGARLMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKA
                     PAHLVEKDKADLAELEDKMAKVQNQLAKLKD"
     gene            complement(37620..38429)
                     /gene="zupT"
                     /locus_tag="ACFOCA_000051"
     CDS             complement(37620..38429)
                     /gene="zupT"
                     /locus_tag="ACFOCA_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFC6986834.1"
                     /translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
                     LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
                     HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
                     IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFG
                     SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVIAVSLVLFHF"
     gene            complement(38610..39866)
                     /locus_tag="ACFOCA_000052"
     CDS             complement(38610..39866)
                     /locus_tag="ACFOCA_000052"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HFC6986835.1"
                     /translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAKGVAMETSFANA
                     GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWRMLQNCTAAHYQ
                     TNKERMVRISEYSREMFRRFEAQTGMNFEERKKGTLQIFRQTKEVEAAEQDIAVLERY
                     GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCHLFTENLYKLCQEKGVQF
                     HFNQTISRIDHNGLRIKAVETETGRFEADAVVCALGCFSRTVLAQLDLDLPIYPVKGY
                     SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
                     VVNDLFPEGGDLSQALFWSGLRPMTPDSTPLIGRTRFENLFLNTGHGTLGWTMSLGSA
                     KLTADIVSGKDTEIRSDDLSLSRYQA"
     gene            complement(39935..41326)
                     /locus_tag="ACFOCA_000053"
     CDS             complement(39935..41326)
                     /locus_tag="ACFOCA_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6986836.1"
                     /translation="MQVFLDNPKAFFETVSGWVWGPVMLMLLVGTGILLTVLLKGLQF
                     TMLGYALKQAFVPPKKHKSGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
                     GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIEKGLGKNWKWMALA
                     FALFGTFASFGIGSSVQSNSVAQAVQTSFGIEPAYTGITLTVLTAVVVLGGIKGIAKA
                     ASFIVPAMAVFYVLGGLSIIAINSDALMPAVKLIFSDAFSAQAVAGGAIGTVIRYGVA
                     RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIVLVMGLLGA
                     GGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
                     GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
                     DFKQKITNGELPH"
     gene            complement(41684..42460)
                     /gene="lpxA"
                     /locus_tag="ACFOCA_000054"
     CDS             complement(41684..42460)
                     /gene="lpxA"
                     /locus_tag="ACFOCA_000054"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFC6986837.1"
                     /translation="MTLIHPTAVIDPKAELDSSVKVGAYTVIGPNVQIGANTEIGPHA
                     VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
                     GETRIGDDNWIMAYCHLAHDCVVGNHTIFANNASLAGHVTIGDYVVLGGYTLVFQFCR
                     IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
                     YHRGIPFEEAKADILRHAETQAELAVFRDFFAQSARGIIR"
     gene            complement(42503..43183)
                     /locus_tag="ACFOCA_000055"
     CDS             complement(42503..43183)
                     /locus_tag="ACFOCA_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HFC6986838.1"
                     /translation="MERYKNAVGEDKAAELYLLNLSLSRELFHVVSIFEIVLRNKIDI
                     CLQQAFKDRNWLYNSIQPQTNPALKYQGCFLRNGTKESAELIKVALSKIQNNSGGKFD
                     HNQLVAGLGFGFWRYLFAGGKDAQFDATGKVLMKVFPKKPKSTPSVQYNQKWIFRELS
                     NINKFRNRLAHHEPICFKGAIKDTNYARNIHQSIFELLNYMDVDTASVFSHFSDQVIA
                     VCDEIDKL"
     gene            complement(43390..43839)
                     /gene="fabZ"
                     /locus_tag="ACFOCA_000056"
     CDS             complement(43390..43839)
                     /gene="fabZ"
                     /locus_tag="ACFOCA_000056"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFC6986839.1"
                     /translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVS
                     INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
                     QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAKRVV"
     gene            complement(43873..44919)
                     /gene="lpxD"
                     /locus_tag="ACFOCA_000057"
     CDS             complement(43873..44919)
                     /gene="lpxD"
                     /locus_tag="ACFOCA_000057"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFC6986840.1"
                     /translation="MIPATYTLSQITARLGGEWRGEDISVTAVRPLADAQAEHISFLA
                     NPKYKAEVHDSSAGAVIVSAKAADGFEGRNLIVADDPYLYFAKVARLFSPVVKARGGI
                     HPTAVVEPSATVPASCEIGANAYIGANTVLGEGCRILANAVVQHDCKLGDEVVLHPNA
                     VVYYGCTLGRRVEIHSGAVIGADGFGLAFAGDSWFKIPQTGAVTLGDDVEIGSNTNID
                     RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
                     GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
                     TLEQQLSDAGQDSK"
     gene            complement(44952..45452)
                     /locus_tag="ACFOCA_000058"
     CDS             complement(44952..45452)
                     /locus_tag="ACFOCA_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HFC6986841.1"
                     /translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
                     RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
                     KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
                     KEMNAR"
     gene            complement(45518..47911)
                     /gene="bamA"
                     /locus_tag="ACFOCA_000059"
     CDS             complement(45518..47911)
                     /gene="bamA"
                     /locus_tag="ACFOCA_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFC6986842.1"
                     /translation="MKLKQIASALMMLGISPLAFADFTIQDIRVEGLQRTEPSTVFNY
                     LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
                     MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
                     RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
                     AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGGRFRWGKVSIEGDT
                     NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
                     VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
                     GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
                     GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
                     TTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDGTDGSFK
                     GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
                     FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYG
                     GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
                     AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
     gene            complement(47968..49308)
                     /gene="rseP"
                     /locus_tag="ACFOCA_000060"
     CDS             complement(47968..49308)
                     /gene="rseP"
                     /locus_tag="ACFOCA_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFC6986843.1"
                     /translation="MHTLLAFIFAILILVSLHEFGHYIVARLCGVKVVRFSVGFGKPF
                     FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
                     NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGTPVADWGSA
                     QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
                     GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGKKITLNYERAGQTHT
                     ADIRPDTVEQSDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVIRAFGMGWEKTVSHSWT
                     TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
                     PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
     gene            complement(49343..50578)
                     /gene="ispC"
                     /locus_tag="ACFOCA_000061"
     CDS             complement(49343..50578)
                     /gene="ispC"
                     /locus_tag="ACFOCA_000061"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFC6986844.1"
                     /translation="MPSENASDGIRYKVILIMTPQVLTILGSTGSIGESTLDVVSRHP
                     EKFRVFALAGHKQVEKLAAQCQTFRPEYAVVADAEHAARLEALLKRDGTATQVLHGAQ
                     ALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARA
                     NGAAVLPVDSEHNAVFQVLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDSITPA
                     QAVKHPNWSMGRKISVDSATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRY
                     RDGSVLAQLGNPDMRTPIAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLKL
                     AYEAMNAGGAAPCVLNAANEAAVAAFLDGQIKFTDIAKTVAHCLSQDFSDGIGDIGGL
                     LAQDARTRAQARAFIGTLR"
     gene            complement(50583..51380)
                     /locus_tag="ACFOCA_000062"
     CDS             complement(50583..51380)
                     /locus_tag="ACFOCA_000062"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004605 - phosphatidate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFC6986845.1"
                     /translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
                     RMGGLCKIKTNHYLVATLVFGVVAYAGGWMLPNLVWYVVLAFWLAIMPLWLRFKWRLN
                     GGWQVYAVGWLLIMPFWFALVSLRPHPDNALPLLAVMGLVWIADVFAYFSGKAFGKHK
                     IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
                     LLESWLKRAAGIKDSSKLLPGHGGVFDRTDSLIAVISVYAAMMSVLN"
     gene            complement(51384..52130)
                     /locus_tag="ACFOCA_000063"
     CDS             complement(51384..52130)
                     /locus_tag="ACFOCA_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HFC6986846.1"
                     /translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
                     DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
                     RLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGV
                     SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDET
                     ALDAAVASFQKRERRFGRTSEQLPIEQQRN"
     gene            complement(52186..52743)
                     /gene="frr"
                     /locus_tag="ACFOCA_000064"
     CDS             complement(52186..52743)
                     /gene="frr"
                     /locus_tag="ACFOCA_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFC6986847.1"
                     /translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
                     WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
                     PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
                     QKLTDKYITEADKLLTAKEEDLMAI"
     gene            complement(52924..54051)
                     /locus_tag="ACFOCA_000065"
     CDS             complement(52924..54051)
                     /locus_tag="ACFOCA_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HFC6986848.1"
                     /translation="MNTSQRNRLVSRWLNSYERYRHRRLIHAVRLGGAVLFATALARL
                     LHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGN
                     LLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWFDSGLMRAMNVLIG
                     AAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTRERLEQNMVKMRQI
                     NARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSE
                     IRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLS
                     TNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
BASE COUNT        13391 a        12214 c        14396 g        14088 t
ORIGIN      
        1 tttagaggcc aatagctcaa ttggtagagt atcggtctcc aaaaccgagg gttgggggtt
       61 cgagaccctc ttggcctgcc aaataaaaaa ttaaccggcc ttgtgccggt taattttttt
      121 gtatttgtta tttagtaaac tctcttgcca tttacatgga ttgagaatag acagatgcta
      181 tgatggataa ataatatgac agaacatacg cctgaaaaaa agaacgttaa agtggatcaa
      241 ctggttgttc aagataaaga atctgcatct aattccggta aggaagggtt ttttgcatat
      301 ttctcaaatt cttggtccga attcaaaaag gtggtttggc ctaagcgtga agatgctgtc
      361 agaatgactg tatttgttat agtgtttgtt gctgtgcttt ctatatttat ctatgcggca
      421 gatacagcaa tttcgtggtt attttttgat gtattgctga gaagggaagg ttgagatgtc
      481 gaaaaaatgg tatgttgtac aggcgtattc ggggtttgag aagaatgtcc aacgaatatt
      541 ggaagagcgt attgcccgtg aggagatggg agattatttc ggacaaattc tggtgcctgt
      601 agagaaagtt gttgatatcc gcaatggtcg taagactatt agtgaaagaa agtcatatcc
      661 tggttatgtg ctagttgaga tggaaatgac agatgactct tggcatcttg taaaaagcac
      721 cccccgtgtt tccggtttta ttggagggag ggctaataga cctacgccga ttagtcagag
      781 agaggctgaa attattttac agcaggttca gaccggcata gagaagccga aaccaaaagt
      841 tgaatttgag gtcggtcaac aggttcgtgt aaatgaaggg ccgtttgcgg attttaacgg
      901 ggtggttgag gaggtcaatt atgaacggaa taagttacgc gtgtctgttc agatatttgg
      961 tagagaaaca cccgttgagc tggagttcag ccaggttgaa aagattaact gatttttata
     1021 cttgaaaaaa aagcaataag aggatagaat caaaaattaa cttggggagc ggaaatggtt
     1081 ccgcgtctta cccgttttta ggagtccgtt aagtggcaaa gaaaattatc ggctatatta
     1141 aactgcaaat tcctgcaggt aaagccaatc catctcctcc ggttggtcct gctttgggtc
     1201 agcgcggttt gaatattatg gaattttgta aggcatttaa tgctgcaacc caaggtatgg
     1261 agcctggctt accgattccg gttgtgatta ctgcatttgc agataaatca ttcacatttg
     1321 tgatgaaaac cccgccagct tctatcttgt tgaaaaaggc tgccggtttg caaaaaggta
     1381 gttctaatcc tctgaccaac aaagtgggta aattgacccg tgcccagttg gaagaaattg
     1441 ctaaaactaa agagcctgat ttgactgctg ctgacttgga tgcggctgtc cgtactatag
     1501 caggttctgc tcgctcaatg ggcttggatg tggagggtgt tgtataatgg ctaaagtatc
     1561 taaacgcttg aaagctcttc gctcttctgt ggaagccaat aaattatatg caattgatga
     1621 agcaattgct ttggtaaaaa aagcagcgac tgctaaattt gacgagtctg ttgacgtatc
     1681 tttcaacttg ggcgttgatc cgcgtaaatc tgaccaagtt atccgtggtt cggtcgttct
     1741 gcctaaaggc accggtaaga taacccgtgt ggctgtattt actcaaggtg caaatgcaga
     1801 agctgctaaa gaagctggtg cagatatcgt cggtttcgaa gatttggctg ctgaaatcaa
     1861 agcaggcaat ctgaactttg acgttgttat tgcttctccc gatgcaatgc gtattgttgg
     1921 tcaattgggt actattttgg gtcctcgagg cttgatgcca aaccctaaag taggtactgt
     1981 tactcctaac gttgctgaag cagtaaaaaa tgcaaaagca ggtcaagtgc agtaccgtac
     2041 cgacaaggca ggtattgttc atgcaacgat tggtcgtgct tcattcgctg aagctgattt
     2101 gaaagagaac tttgatgcgt tgctggatgc tatcgttaaa gccaagcctg ctgccgctaa
     2161 aggtcagtat ctgaaaaaag ttgctgtgtc tagcaccatg ggtttgggta ttcgcgttga
     2221 tacatcaagc gtaaataact aatcttaagg aattttcaag cagtttggtt ttctgggctg
     2281 cttgaatttg ggctacttaa aattaagtag atgtccaaga ccgtagggat cgtaagattt
     2341 aatcgtaact gccctacgca gacggtagtc ctgaaacaca ttgcaagatt gcttgtaaga
     2401 tgtcttttta ggttaccgcg ctggtgggat atcgttttgg tatcctgttt ataaacagtg
     2461 ggaggtagac cttgagtctc aatattgaaa ccaagaaagt ggcggtcgag gaaattagcg
     2521 cggcaattgc taatgctcaa accctcgtag tcgctgaata tcgcggtatc agtgtttcca
     2581 gtatgactga gcttcgtgcg aatgcacgta aagaaggcgt ttatttgcgc gttctgaaaa
     2641 atactttggc tcgtcgtgca gtgcaaggta cttcatttgc agaattggcc gatcaaatgg
     2701 ttggtccgtt ggtttacgct gcttctgaag atgctgttgc tgctgctaaa gtgttgcacc
     2761 aattcgcgaa aaaagatgac aaaattgtcg ttaaagccgg ttcttacaat ggcgaagtaa
     2821 tgaatgctgc tcaggttgct gagttggctt ctattccgag ccgcgaagag ctgttgtcca
     2881 aactgttgtt cgttatgcaa gctcctgtat cgggctttgc gcgcggtttg gctgctttgg
     2941 cagagaaaaa agccggcgaa gaagccgctt aatcgatttt gtttctgtta atcaattatt
     3001 ttttaataca atatttggag taaaatagca tggctattac taaagaagac attttggaag
     3061 cagttggttc tttgaccgta atggaattga acgacttggt taaagctttt gaagaaaaat
     3121 tcggtgtttc tgctgctgct gttgcagttg caggtcctgc tggtgccggt gctgccgatg
     3181 ctgaagaaaa aaccgaattt gatgtcgttt tggcttctgc cggcgatcaa aaagtcggcg
     3241 tgattaaagt tgtccgtgca attaccggtt tgggtctgaa agaagctaaa gacatcgttg
     3301 acggtgcacc taaaaccatt aaagagggtg tttctaaagc tgaagccgaa gacatccaaa
     3361 aacaactgga agaagccggc gctaaagtcg aaatcaaata atttgatgct tcttatgaag
     3421 gctggcagtt ttctgccagc cttattttgc ttcttaaaat aaacatcaag tattgtttac
     3481 atttatttgc atagttttta tcaaatcatt gcaaataaat gtaaacatca gattgatgcg
     3541 tgccgttgct ttcaaacggc ctattattga aaattacttt tcggagtgta tatgagctat
     3601 tcgtttaccg agaaaaaacg tatccgtaag agttttgcaa agcgggaaaa tgttttggaa
     3661 gttcctttct tgctagcaac ccaaattgat tcttatgcga agtttttgca gctggaaaat
     3721 gcttttgaca aacgtaccga tgacggtctg caggcagcat ttaattctat tttcccgatt
     3781 gtgagccata acggttatgc gcgattggag tttgtgcatt acacattggg cgagcctttg
     3841 ttcgatattc ccgaatgtca gttgcgcgga atcacttatg cagccccctt gcgcgcgcgt
     3901 atccgtttgg tgattttgga taaggaagca tctaaaccga cggtaaaaga agttcgtgaa
     3961 aacgaagtgt atatgggcga aattccgttg atgaccccga gcggttcttt tgtgattaac
     4021 ggcacagagc gtgtgattgt ctcccagttg caccgttcgc ccggcgtatt cttcgagcat
     4081 gacaaaggta agacgcactc ttccggcaaa ttgttattct ccgcccgcat cattccctac
     4141 cgtggttcat ggttggattt tgaatttgat ccgaaagatt tgctgtattt ccgtatcgac
     4201 cgccgccgta aaatgccggt aacgattttg ttgaaggctt tgggctacaa caatgagcaa
     4261 atcttggata ttttctacga caaagaaacg ttctatttgt cttcaaacgg tgttcaaacc
     4321 gatttggtcg caggccgtct gaaaggcgaa actgccaagg tcgatatctt ggataaagaa
     4381 ggcaatgtat tggttgccaa aggtaagcgt attactgcga aaaatatccg tgatattacc
     4441 aatgcaggcc tgacccgttt ggatgtagaa ccggaaagcc tgctgggcaa agcattggct
     4501 gccgatctga ttgattcgga aaccggcgag gtattggctt ctgccaatga tgaaattaca
     4561 gaagagttgt tggccaaatt tgatatcaac ggcgtaaaag aaattacgac cctttacatc
     4621 aatgagttgg atcagggtgc ttatatctcc aataccttgc gtacggatga gactgccggc
     4681 cggcaggcgg ctcgtgttgc gatttaccgt atgatgcgtc cgggcgaacc gcccactgaa
     4741 gaggcggtcg agcaattgtt taaccgcttg ttcttcagtg aagacagcta cgatttgtcc
     4801 cgcgtaggcc gtatgaaatt taatacgcgc acatacgaac aaaaactgtc cgaagcccaa
     4861 caaaactctt ggtacggccg cctgctgaac gaaacgtttg ccggtgctgc cgacaaaggc
     4921 ggttatgtcc tgagcgtcga agatattgtc gcctcgattg cgactttggt cgagttgcgt
     4981 aacggccatg gcgaagtgga cgatatcgat cacttgggca accgccgagt acgttcggta
     5041 ggcgagctga ctgaaaacca attccgcagc ggtttggccc gtgtggaacg tgctgtaaaa
     5101 gaacgtttga atcaggcgga atcagaaaac ttgatgccgc acgatttgat taatgcaaaa
     5161 cctgtttctg ccgctattaa agaattcttc ggctccagcc aattgagtca gtttatggat
     5221 cagaccaacc ccttgtctga agtaacccat aaacgccgcg tatctgcatt gggtccgggc
     5281 ggtttgaccc gcgaacgtgc cggcttcgag gtacgggacg tgcatccgac ccactacggc
     5341 cgcgtatgtc cgattgaaac gcctgaaggt ccgaacatcg gtttgatcaa ctcattgtcc
     5401 gtttatgcgc gcaccaatga ttacggtttc ttggaaacgc cttaccgccg cgttatcgac
     5461 ggcaaagtaa ccgaggaaat cgattacttg tctgccatcg aagaaggccg ctatgtgatt
     5521 gcacaggcga atgccgattt ggattcagat ggcaatctga ttggcgattt ggttacctgt
     5581 cgtgaaaaag gcgaaaccat tatggcaacg cccgaccgcg tccaatatat ggacgtggca
     5641 accggccagg tggtatccgt tgcggcatcc ctgattccgt tcttggaaca tgatgacgcg
     5701 aaccgcgcat tgatgggtgc caacatgcaa cgtcaggcag tgccttgctt gcgtcctgaa
     5761 aaaccgatgg tcggtaccgg tatcgagcgt tccgttgccg ttgactctgc tactgcaatc
     5821 gttgcccgcc gaggcggcgt ggtcgagtat gtcgatgcca accgtgttgt gattcgtgtc
     5881 catgacgacg aagcgactgc cggcgaagtg ggtgtcgata tttacaactt ggttaaattt
     5941 acccgttcca accagtctac caatatcaat cagcgtcctg ccgtcaaagc cggcgatgtt
     6001 ttgcaacgcg gcgatttggt ggccgatggc gcgtccaccg atttgggcga attggctttg
     6061 ggtcaaaata tgaccatcgc cttcatgccg tggaacggtt acaactacga agactcgatt
     6121 ctgatttccg aaaaagtggc tgcggatgat cgttacactt cgattcacat tgaggaattg
     6181 aatgtcgttg cccgcgatac caagctgggt gcggaagaca ttacccgcga tattccgaac
     6241 ttgtccgagc gtatgcaaaa ccgcttggac gaatccggta tcgtttacat cggtgcagaa
     6301 gtagaagccg gcgatgtgtt ggtaggcaaa gtaacgccta aaggcgaaac ccaactgacg
     6361 ccggaagaaa aactgttgcg cgccatcttc ggcgaaaaag cgtctgacgt aaaagatact
     6421 tcactgcgta tgcctaccgg tatgagcggt acggttatcg acgttcaagt cttcactcgt
     6481 gaaggtattc aacgcgacaa acgcgcccaa tccattatcg attccgagtt gaaacgctac
     6541 cgtttggatt tgaacgacca attgcgtatt ttcgacaacg acgcattcga ccgtatcgaa
     6601 cgtatgattg tgggtcaaaa agccaatggt ggtccgatga agctggctaa aggcagcgaa
     6661 attactaccg aatatttggc gggtctgccg agcaggcacg attggttcga tatccgtctg
     6721 accgatgaag atttggccaa gcagttggaa ctgattaaag tgagcctgca acaaaaacgc
     6781 gaagaagcgg acgagttata cgaaatcaag aagaaaaaac tgacccaagg cgacgaattg
     6841 caacccggcg tacaaaaaat ggtgaaagtt tttatcgcca tcaaacgccg tctgcaagcc
     6901 ggcgacaaaa tggcgggccg ccacggtaac aaaggcgtgg tatcgcgcat tctgccagtg
     6961 gaagacatgc cttacatggc ggacggccgt ccggtagaca tcgtactgaa cccattgggc
     7021 gtaccttccc gtatgaacat cggtcagatt ttggaagttc acttgggttg ggcagcaaaa
     7081 ggtatcggcg agcgtatcga ccgtatgctg aaagagcaac gcaaagcagg cgagttgcgc
     7141 gagttcttga acagactcta caacggcagc ggtaagaaag aagatttgga cagcctgaca
     7201 gatgaagaaa tcatcgaatt ggcttccaac ctgcgtaaag gtgcatcttt cgcttctcct
     7261 gtattcgacg gtgcgaaaga gtctgaaatc cgcgaaatgt tgaacttggc ttacccaagc
     7321 gaagatcctg aggttgagaa actgggcttc aacgacagta aaactcaaat cacgctgtat
     7381 gacggccgtt caggcgaagc atttgatcgc aaggttacag tcggtgtgat gcactatctg
     7441 aaactgcacc acttggttga cgaaaaaatg cacgcccgtt ctaccggtcc atacagtctg
     7501 gttacccaac agcctttggg cggtaaagct cagttcggtg gccaacgttt cggtgagatg
     7561 gaggtttggg cattggaagc atacggtgcg gcatacacgc tgcaagagat gctgactgtg
     7621 aagtctgatg acgtgaacgg ccgtaccaaa atgtacgaga acatcgtcaa aggcgaacac
     7681 aaaatcgatg ccggtatgcc cgagtccttc aacgtattgg ttaaagagat tcgttcactg
     7741 ggcttggata tcgatttgga acgctactaa gcagaagttt tcagacggcc tttcaaggtc
     7801 gtctgaaaaa gcggtttcag aataagaatg aagcaatcgg catttaggcc gtctgaaatc
     7861 gaaagtaccg tttcccaata tcgaaaatcc gccacgcggt aaaaatactt ccttcaagga
     7921 gcaaaaatga atttgttgaa cttatttaat ccgttgcaaa ctgccggcat ggaagaagag
     7981 tttgatgcca tcaaaatcgg cattgcttct cccgaaacca tccgttcatg gtcttacggc
     8041 gaagttaaaa aacctgaaac catcaactac cgtacgttca aacctgagcg tgacggtctg
     8101 ttctgcgcca aaatctttgg tccggtcaaa gactacgaat gcttgtgcgg aaaatacaaa
     8161 cgcttgaaat ttaaaggcgt aacctgtgaa aaatgcggcg tagaagtgac cctgtccaaa
     8221 gtgcgccgcg aacgcatggg ccacattgaa ttggcagcac ccgttgccca tatttggttc
     8281 ttgaaatccc tgccttcccg cttgggtatg gtactggaca tgactttgcg cgacatcgaa
     8341 cgcgtattgt actttgaagc atttgtggta accgaccccg gtatgactcc gctgcaacgc
     8401 cgccaattgc tgactgaaga cgattactac aacaaactgg acgaatacgg cgatgacttc
     8461 gatgccaaaa tgggtgcgga aggtatccgc gaattgctgc gtaccttgaa tgtggcgggc
     8521 gaaatcgaaa tcctgcgcca agagttggaa tcgaccgggt ccgacaccaa aatcaaaaaa
     8581 atcgccaaac gtttgaaagt attggaagcc ttccaccgtt ccggtatgaa gctggaatgg
     8641 atgattatgg atgtgctgcc ggtattgccg cctgatttgc gtccgttggt tccattggat
     8701 ggcggtcgtt ttgccacttc cgatttgaac gatttgtacc gtcgcgtcat caaccgtaac
     8761 aaccgtctga aacgtctgtt ggaactgcat gcgcccgaca ttatcgtccg caacgaaaaa
     8821 cgtatgttgc aagaagcggt cgactctctg ttggataacg gccgtcgcgg taaagccatg
     8881 accggcgcca acaaacgccc gctgaaatca ttggcagaca tgattaaagg taaaggcggt
     8941 cgcttccgtc aaaacctgtt gggcaaacgt gtggactact ccggccgttc cgtgattacc
     9001 gtaggcccat acctgcgtct gcaccaatgc ggtctgccga aaaaaatggc tttggaactg
     9061 ttcaaaccgt tcattttcca caaattggaa aaacaaggtt tggcctctac cgttaaagca
     9121 gcgaaaaaat tggtagagca agaagtacca gaagtatggg acatcttgga agaagtcatc
     9181 cgcgaacatc cgattatgct gaaccgtgcg ccgaccctgc accgtttggg tattcaagcg
     9241 ttcgaaccta tcttgattga aggtaaagcg attcagttgc acccattggt gtgtgctgcg
     9301 ttcaacgccg actttgacgg cgaccaaatg gcggtacacg ttccattgag cttggaagca
     9361 caaatggaag cacgcacgct gatgctggct tcaaacaacg tattgtctcc tgccaacggc
     9421 gaaccgatta tcgtaccttc ccaagacatc gtattgggcc tgtactacat gacccgcgac
     9481 cgtatcaatg ccaaaggcga gggcagcctg tttgccgatg tgaaagaagt gcatcgcgca
     9541 taccatacca aacaggttga actgggtacg aaaattaccg tacgtctgcg cgaatgggtg
     9601 aaaaacgaag caggtgagtt tgagcctgtc gttaaccgtt acgaaacaac cgtcggccgt
     9661 gcattgttga gcgaaatcct gccgaaaggc ctgccgtttg aatatgtcaa caaagcgttg
     9721 aagaaaaaag aaatttctaa actgattaac gcatcgttcc gcctgtgcgg cttgcgcgat
     9781 acggttatct ttgctgacca cctgatgtac accggtttcg gatttgcggc aaaaggcggt
     9841 atttccattg ccgttgacga tatggaaatt ccaaaagaaa aagtggcctt gctggctgaa
     9901 gccaatgccg aggttaaaga aatcgaagac caataccgtc aaggtttggt taccaacggc
     9961 gaacgctaca acaaggtggt cgatatttgg ggtcgtgccg gcgataagat tgctaaagcg
    10021 atgatggaca acttgtccaa acaaaaagtt atcgaccgtg acggcaacga agtcgatcaa
    10081 gagtcattca actccattta tatgatggcg gactccggtg cccgtggttc tgcagctcag
    10141 attaaacagt tgtccggtat gcgtggcttg atggcaaaac ctgacggctc gattattgaa
    10201 acgccgatta cctcaaactt ccgtgaaggt ctgaccgtat tgcaatactt tattgcgacc
    10261 cacggtgcgc gtaagggttt ggcggatacc gcattgaaaa ccgcgaactc cggttacctg
    10321 acccgtcgtc tggtagacgt aactcaagat ttggtcgttg ttgaagacga ttgcggtact
    10381 tcagacggct ttgtcatgaa ggcagtggta caaggcggtg atgtgattga agcattgcgc
    10441 gagcgtattt tgggccgtgt tactgcgtct gacgttgtcg atccgtcaag cggcgagacc
    10501 ttggttgaag caggcacgtt gttgactgaa aaactggtgg atatgattga ccaatccggt
    10561 gtcgatgaag tcaaagtccg tactccgatt acttgtaaaa cccgccacgg tttgtgcgcg
    10621 cactgttacg gccgcgactt ggcgcgcggc aaactggtca atgccggaga ggcagtcggc
    10681 gtgattgccg cccaatcaat cggcgaaccg ggtacccagc tgactatgcg tacgttccac
    10741 atcggtggtg cggcatcccg tgcggcagca gccagccaag tggaagccaa atccaacggt
    10801 acggcacgat tcagcagcca aatgcgttat gttgccaaca ataaaggcga gttggttgtc
    10861 atcggccgtt cttgtgaagt cgtgattcac gatgacatcg gccgtgaacg cgaacgccac
    10921 aaagtacctt acggtgccat cctgctggta caagacggta tggccattaa agccggtcaa
    10981 accttggcaa cctgggatcc gcatacccgt ccgatgatta ccgaacacgc aggtatggtg
    11041 aaattcgaaa acgtggaaga aggcgttacc gttgccaaac aaaccgatga tgtaaccggt
    11101 ttgtccactt tggtagtgat cgacggtaaa cgtcgttcct ctagtgcttc caaactgctg
    11161 cgtccgactg tgaaactctt ggacgaaaac ggcgtggaaa tctgtattcc cggtacttct
    11221 actccggtat ccatggcatt ccccgttggt gcggtgatta ccgtacgcga aggtcaggaa
    11281 atcggtaaag gcgacgtatt ggcgcgtatc ccgcaagcct cttccaaaac ccgcgacatt
    11341 accggtggtc tgccgcgcgt tgccgaattg tttgaagcac gcgtgccgaa agatgccggt
    11401 atgttggcgg aaattaccgg taccgtttcc ttcggcaaag agaccaaagg caagcaacgt
    11461 ctgattatta ccgacgtgga cggcgtagca tacgagactt tgatttccaa agagaaacag
    11521 attttggtac acgacggtca agtggtaaac cgcggcgaaa ccattgtgga cggcgcggtc
    11581 gatccgcacg atattctgcg tctgcaaggt atcgaagcac tggcacgcta cattgtccaa
    11641 gaggtgcaag aggtttaccg tctgcaaggt gtgaagattt ccgacaaaca catcgaagtc
    11701 atcatccgtc aaatgttgcg ccgtgtgaac attgcggatg ccggcgaaac cggcttcatt
    11761 accggcgagc aggtcgaacg cggcgatgtg atggctgcca atgaaaaagc tttggaagaa
    11821 ggcaaagaac cggcacgtta cgaaaacgta ttgctgggta ttaccaaagc ctccctgtct
    11881 accgacagct tcatttctgc cgcatcgttc caagaaacga cccgcgttct gaccgaagcc
    11941 gcgattatgg gcaaacaaga cgagctgcgc ggtctgaaag agaacgtgat tgtcggtcgt
    12001 ttgattcctg ctggtactgg tttgacttac caccgcagcc gtcatcaaca atggcaagag
    12061 gtggagcagg agactgctga aacccaagta acggatgaat aatctttggt gcgtttattc
    12121 aatacaaaac cgcaagcttt aggcttgtgg tttttctttc agacggcatt taaattatta
    12181 gtgatttcct ttccggtaat agttgtttat gagcataagg gacctaaatg tttatctgaa
    12241 aaaagaaaaa tgatgaatct tcctgatctc acgcttgact gtctgcttgc aataaaaata
    12301 taattccact cttgccgaca tggtgtcggc aagtatttaa ctcaacagga cgagaaaata
    12361 tgccaactat caaccaattg gtacgcaaag gccgtcaaaa gcccgtgtac gtaaacaaag
    12421 tgcccgcact ggaagcctgc ccgcaaaaac gcggcgtgtg cacccgtgta tacacgacta
    12481 cccctaaaaa acctaactct gcattgcgta aagtatgtaa agtccgcctg accaacggtt
    12541 ttgaagtcat ttcatacatc ggcggcgaag gccacaacct gcaagagcac agtgtcgtat
    12601 tgattcgcgg cggtcgtgta aaagacttgc caggtgtgcg ttaccacact gtacgcggtt
    12661 ctttggatac tgcaggcgtt aaagaccgta aacaagcccg ttccaaatac ggtgctaagc
    12721 gtcctaaata attactggga cttaaatagg cacgtcggcc gcctaagctg aacaacggcc
    12781 gagtaagtga atactcaatt gggtattcat gggaatagac ccgactgaat agattaaagg
    12841 aaattaaaat gccaagacgt agagaagtcc ccaagcgcga cgtactgcca gatcctaaat
    12901 tcggcagcgt cgagttgacc aaattcatga acgtattgat gattgacggt aaaaaatccg
    12961 ttgccgagcg tatcgtttac ggtgcgttgg aacagattga gaaaaaaacc ggcaaagtag
    13021 caatcgaagt atttaacgaa gccattgcaa acgccaagcc tatcgtggaa gtgaaaagcc
    13081 gccgtgtagg tggtgcaaac taccaagttc ctgttgaagt tcgtccttca cgccgtttgg
    13141 ctttggcaat gcgctgggtt cgcgatgcgg cccgcaaacg tggtgagaaa tccatggacc
    13201 tgcgtttggc aggcgaattg attgatgcgt ccgaaggtcg tggcggtgcg ttgaaaaaac
    13261 gtgaagaagt acaccgtatg gctgaagcca acaaagcatt ctctcacttc cgtttctaat
    13321 tttgaaaggc taataaaatg gctcgtaaga ccccgatcag cctgtaccgt aacatcggta
    13381 tttccgccca tatcgatgcg ggtaaaacca cgacgacaga acgtattttg ttctatactg
    13441 gtttgaccca caagctgggc gaagtgcatg acggtgcggc tactaccgac tacatggaac
    13501 aagagcaaga gcgcggtatt accattacct ccgctgccgt tacttcctac tggtccggta
    13561 tggcgaaaca attccccgag caccgcttca acatcatcga caccccggga cacgttgact
    13621 ttaccgtaga ggtagagcgt tctatgcgtg tattggacgg cgcggtaatg gtttactgcg
    13681 cggtgggcgg tgttcaaccc caatctgaaa ccgtatggcg gcaagccaac aaataccaag
    13741 tgccgcgctt ggcgtttgtc aataaaatgg accgtcaggg tgccaacttc ttccgcgttg
    13801 tcgagcaaat gaaaacccgt ttgcgcgcaa accctgtacc tatcgtcatt ccggttggtg
    13861 cggaagacaa cttcagcggt gtggttgatt tgttgaaaat gaaatccatc atttggaatg
    13921 aagccgataa aggtacaacc tttacctatg gcgatattcc tgccgaattg gtcgaaactg
    13981 ccgaagaatg gcgtcaaaat atgattgaag ccgcagccga agccagcgaa gaactgatgg
    14041 acaaatactt aggcggcgac gagctgaccg aagaagaaat cgtaggcgcg ttgcgtcaac
    14101 gtactttggc aggcgaaatt cagcctatgc tgtgtggttc tgcatttaaa aacaaaggtg
    14161 ttcaacgtat gttggacgca gttgtagaat tgctgccagc tcctaccgat attcctccgg
    14221 ttcaaggtgt caacccgaat accgaggaag ccgacagccg tcaagccagc gatgaagaga
    14281 aattctctgc attggcgttc aaaatgttga acgacaaata cgtcggtcag ctgaccttta
    14341 tccgcgttta ctcaggcgta gtaaaatccg gcgataccgt attgaactcc gtaaaaggca
    14401 ctcgcgaacg tatcggtcgt ttggtacaaa tgactgccgc agaccgtact gaaatcgaag
    14461 aagtacgcgc cggcgacatc gcagccgcta ttggtctgaa agacgttact accggtgaaa
    14521 ccttgtgtgc ggaaagcgcg ccgattatct tggaacgtat ggaattcccc gagccggtaa
    14581 tccatattgc cgttgagccg aaaaccaaag ccgaccaaga gaaaatgggt atcgccctga
    14641 accgcttggc taaagaagac ccttctttcc gtgtccgtac agacgaagaa tccggtcaaa
    14701 ccattatttc cggtatgggt gagctgcact tggaaattat tgttgaccgt atgaaacgcg
    14761 aattcggtgt ggaagcaaat atcggtgcac ctcaagtggc ttaccgtgaa actatccgca
    14821 aagccgttaa agctgaatac aaacacgcga aacaatccgg tggtaaaggt caatatggtc
    14881 acgttgtgat tgaaatggaa cctatggaac cggggggcga aggttacgag tttatcgatg
    14941 aaattaaagg tggcgtgatt cctcgcgaat tcattccgtc tgtcgataaa ggtatccgcg
    15001 atacattgcc taacggtatc gttgccggct atcctgtagt tgatgtacgt atccgtctgg
    15061 tattcggttc ttaccatgat gtcgactctt cccaattggc atttgaattg gccgcttctc
    15121 aagcgtttaa agaaggtatg cgtcaagcat ctcctgccct gcttgagccg attatggcag
    15181 ttgaagtgga aactccggaa gaatacatgg gcgacgtaat gggcgacttg aaccgccgtc
    15241 gcggtgttgt attgggtatg gatgatgacg gtatcggcgg taaaaaagtc cgtgccgaag
    15301 tacctctggc agaaatgttc ggttattcga ccgacctgcg ttctgcaacc caaggccgcg
    15361 ctacttactc tatggagttc aagaaatatt ctgaagctcc tgcccacata gctgctgctg
    15421 taactgaagc ccgtaaaggc taatcaggca aataggtcgt ctgaaaggct gaaatgattt
    15481 ttcagacggc attgttcttt aatcgatctt taatgtaaag gaattagctc atggctaagg
    15541 aaaaattcga acgtagcaaa ccgcacgtaa acgttggcac catcggtcac gttgaccatg
    15601 gtaaaaccac cctgactgcc gctttgacta ctattttggc taaaaaattc ggcggtgctg
    15661 caaaagctta cgaccaaatc gacaacgcac ccgaagaaaa agcacgcggt attaccatta
    15721 acacctcgca cgtggaatac gaaaccgaaa cccgccacta cgcacacgta gactgcccgg
    15781 ggcacgccga ctacgttaaa aacatgatta ccggcgccgc acaaatggac ggtgcaatcc
    15841 tggtatgttc cgcagccgac ggccctatgc cgcaaacccg cgaacacatc ctgctggccc
    15901 gccaagtagg cgtaccttac atcatcgtgt tcatgaacaa atgcgacatg gtcgacgatg
    15961 ccgagctgtt ggaactggtt gaaatggaaa tccgcgacct gctgtccagc tacgacttcc
    16021 ccggcgacga ctgcccgatt gtacaaggtt ccgcactgaa agccttggaa ggcgatgccg
    16081 cttacgaaga aaaaatcttc gaactggctg ccgcattgga cagctacatc ccgactcccg
    16141 agcgtgccgt ggacaaaccg ttcctgctgc ctatcgaaga cgtgttctcc atttccggcc
    16201 gcggtacagt agtaaccggc cgtgtagagc gcggtatcat ccacgttggt gacgagatcg
    16261 aaatcgtcgg tctgaaagaa acccaaaaaa ccacctgtac cggcgttgaa atgttccgca
    16321 aactgctgga cgaaggtcag gcgggcgaca acgtaggcgt attgctgcgc ggtaccaaac
    16381 gtgaagacgt agagcgtggt caggtattgg ccaaaccggg tactatcact cctcacacca
    16441 agttcaaagc agaagtgtac gtactgagca aagaagaggg cggccgccat accccgttct
    16501 tcgccaacta ccgtccccaa ttctacttcc gtaccaccga cgtaaccggc gcggttactt
    16561 tggaagaagg tgtggaaatg gtaatgccgg gtgagaacgt aaccattacc gtagaactga
    16621 ttgcgcctat cgctatggaa gaaggcctgc gctttgcgat tcgcgaaggc ggccgtaccg
    16681 tgggtgccgg cgtggtttct tctgttatcg cttaattgaa ggatattgat aaatggcaaa
    16741 ccaaaaaatc cgtatccgcc tgaaagctta tgattacgcc ctgattgacc gttctgcaca
    16801 agaaatcgtt gaaactgcaa aacgtaccgg tgccgttgta aaaggcccga ttcctttgcc
    16861 gaccaaaatc gagcgtttca acattttgcg ttctccgcac gtgaacaaaa cttcccgtga
    16921 acaattggaa atccgcaccc acttgcgcct gatggacatc gtggattgga ccgataaaac
    16981 taccgatgcg ctgatgaagc tggatttgtc ggccggtgtt gatgtagaaa tcaaagtcca
    17041 ataattcgga ctattgaaaa tccccaagca atcaatgctt ggggattttt tatgttatgc
    17101 cgagaccttt gcaaaattcc ccaaaatctc ctaaattccc accaagacat ttaggggatt
    17161 tctcatgagc accttctttc aacaaaccgc acaagccatg attgccaaac acatcgaccg
    17221 tttcccgcta ttgaagttgg atcaagtgat tgattggcag ccgatcgagc aaaggtacga
    17281 ccatctatgc cgataaaggc tatgacagtg cggaaaaccg gcaacatctg aaagaacatc
    17341 agttgctgga cggcattatg cgcaaagcct gccgcaaccg tccgctgtcg gaagcgcaaa
    17401 ccaaacgcaa ccgatatttg tcgaagcccc gttatgtggt cgaacaaagc ttcggtacgc
    17461 tgcaccgtaa attccgctat gcgcgggcag cctatttcgg gctgctcaaa gtgagtgcgc
    17521 aaagccacct gaaagcgatg tgtttgaacc tgttgaaagc ggccaacagg ctaagtgcgc
    17581 ccgctgccgc ctaaaaggca gcccggatgc ctgattatcg ggtatccagg gaagattaag
    17641 ggggtatttg ggtagaatta ggaggtattt ggggcgaaaa cagccgaaaa cctgtgttgg
    17701 ggtttcggct gtcgggaggg aaaggaattt tgcaaaggtc ccagcatacg aaaactacca
    17761 tctcaaagaa ataatggatg cagtcatcaa ccatattccg gtttgtcgga gaaagatgca
    17821 tacgctgtga tgaccggata ccgacccttt aaaagagtcc gaccctatgc cgtctgaaaa
    17881 ttcaaaacgc ttcagacggc atattgaaga tatttctgat atttctgttg atatttcttt
    17941 gacttgtcag atataatgcc gagcttggta catttgtgcc aagtttaact ttgtctgaaa
    18001 gacaggccaa tcgtagcctg tccctttact ttaaaaggaa aataatcatg actttaggtc
    18061 tggttggacg caaagttggt atgacccgcg tgttcgacga acagggtgtt tctgttccgg
    18121 taaccgtttt ggatatgtct gccaaccgcg ttacacaagt aaaatccaaa gatactgacg
    18181 gctatactgc cgttcaagtt acctttggtc agaaaaaagc caatcgtgtc aataaagccg
    18241 aagccgggca ctttgcaaaa gcaggtgttg aagccggtcg cggtttgatt gagtttgctt
    18301 tgactgaaga aaaactggct gaattgaaag ccggtgacga aatcaccgtt tctatgtttg
    18361 aagtcggcca gctggtcgat gtaaccggta cctctaaagg taaaggtttc tccggtacga
    18421 tcaaacgtca taacttcggt gcccaacgta cttcccacgg taactcccgc tctcaccgcg
    18481 ttccaggctc tatcggtatg gcgcaagacc cgggtcgcgt gttccccggt aaacgcatgg
    18541 ccggccaata cggcaacacc aaagcaactg ttcaaaaatt ggaagttgtc cgtgttgatg
    18601 cagaacgcca actgctgttg gttaagggtg ctgttccagg tgcggtcaac agcgatgttg
    18661 tagttcgtcc cagcgtgaaa gtaggtgcgt aatggaattg aaagtaattg acgctaaagg
    18721 acaagtttca ggcagtctgt ctgtttctga tgctttgttc gcccgcgaat acaatgaagc
    18781 gttggttcat cagctggtaa atgcctattt ggcaaacgcc cgctccggca atcgcgctca
    18841 aaaaacccgt gccgaagtaa aacactcaac caaaaaacca tggcgtcaaa aaggtaccgg
    18901 ccgtgcccgt tccggtatga cttcttctcc gctgtggcgt aaaggtggtc gcgcgttccc
    18961 gaacaaaccc gacgaaaact tcactcaaaa agtaaaccgc aaaatgtacc gtgccggtat
    19021 ggcgactatt ctgtcccaat tgactcgtga cgagcgtttg tttgcgattg aggcgttgac
    19081 tgccgaaact cctaaaacca aagtttttgc cgaacaagtg aaaaatctgg gtctggagca
    19141 agtgttgttt gtaaccaaac agctcgacga gaatgtttac ttggcttcac gcaacttgcc
    19201 aaacgtgttg gttttggaag ctcaacaagt tgatccttac agcttgctgc gttacaaaaa
    19261 agtaatcatc actaaagatg cagttgcaca attagaggag caatgggtat gaatcaacaa
    19321 cgtttgactc aagtgatttt ggcacctatc gtttctgaaa aaagcaacgt attggctgaa
    19381 aaacgcaacc aaatgacgtt taaagttttg gcaaatgcag ccaaacctga aatcaaagcg
    19441 gctgtcgagc tgctgttcgg tgttcaagtt gcttctgtaa ctaccgttac aactaaaggc
    19501 aaaactaagc gttttggtcg tactttgggc cgccgcagcg atgttaaaaa agcttatgta
    19561 agcttggctg ccggtcaaga gttggatttg gaagccgctg ctgcagctgc agataaggaa
    19621 taaacaaaat ggcaatcgtt aaaatgaagc cgacctctgc aggccgtcgc ggcatggttc
    19681 gcgtggtaac agaaggtttg cacaaaggtg caccttatgc acccttgctt gaaaagaaaa
    19741 attctactgc cggccgtaac aataatggtc atatcaccac ccgtcacaaa ggcggcggtc
    19801 ataaacacca ttaccgtgtt gtagacttta aacgtaacaa agacggcatt cctgctaaag
    19861 tagagcgtat cgaatacgat cctaaccgta ctgccttcat cgcactgttg tgctatgcag
    19921 acggcgagcg tcgttacatc attgctcctc gcggtattca agccggtgct gtattagttt
    19981 ccggcgctga agctgccatc aaagtaggca acaccctgcc gatccgcaac attcccgttg
    20041 gtacgactat ccactgtatc gaaatgaaac ccggtaaagg tgctcaaatc gcacgttctg
    20101 ccggtgcttc tgcggtattg ctggctaaag aaggcgcgta cgctcaagtc cgtctgcgct
    20161 ctggcgaagt ccgtaaaatc aacgtaaatt gccgtgcgac catcggtgaa gttggtaacg
    20221 aagagcaaag cctgaaaaaa atcggtaaag ccggtgccaa ccgttggcgc ggtattcgtc
    20281 cgaccgtacg cggtgttgtc atgaatcctg tcgatcaccc gcatggtggt ggtgaaggcc
    20341 gtacgggcga ggcccgcgaa ccggtcagcc catggggtac tcctgctaaa ggctaccgca
    20401 ctcgtaataa caaacgcacg gataacatga ttgttcgtcg ccgttactca aataaaggtt
    20461 aatttagtat ggctcgttca ttgaaaaaag gcccatatgt agacctgcat ttgctgaaaa
    20521 aagtagatgc tgctcgcgca agcaacgaca aacgcccgat taaaacctgg tctcgtcgtt
    20581 ctaccattct gcctgatttt atcggtctga ccattgctgt gcacaacggc cgcacccatg
    20641 tgcctgtgtt tatcagcgac aatatggttg gtcataaatt aggcgaattc tcattgaccc
    20701 gtacctttaa aggccacttg gccgataaaa aggctaaaaa gaaataaggt gaatcatgag
    20761 agtaaatgca caacataaaa atgcccgtat ctctgctcaa aaggctcgtt tggtagctga
    20821 tttgattcgt ggtaaagacg ttgcccaagc tttgaatatt ttggctttca gtcctaaaaa
    20881 aggtgccgag ctgattaaaa aagtattgga gtcagctatt gctaatgccg agcacaataa
    20941 cggtgcggac attgatgaac tgaaagtggt aactatcttt gttgacaaag gcccaagctt
    21001 gaaacgtttt caagctcgcg ccaaaggtcg cggtaaccgc atcgaaaaac aaacttgtca
    21061 tatcaatgtg acagtgggta actaaggaaa agctatggga caaaagatta accctacagg
    21121 ctttcgcctg gcggtaacta aagactgggc ttcaaaatgg tttgctaaaa gcaccgactt
    21181 ttctactgtt ttgaagcagg atatcgatgt tcgcaattat ttgcgtcaaa aattggccaa
    21241 tgcttcggtt ggtcgagtgg ttattgaacg ccctgcaaaa tctgcacgca ttaccattca
    21301 ctccgctcgt ccgggtgtgg ttatcggtaa aaaaggtgag gatatcgagg ttttgaaacg
    21361 tgacttgcaa gtcttgatgg gtgtacctgt tcatgtaaat attgaagaga tccgccgtcc
    21421 tgagttggat gctcaaatta ttgctgacgg tattgcccag cagttggaaa agcgcgttca
    21481 attccgtcgt gctatgaaac gagcaatgca aaatgcaatg cgttctggtg ctaaaggcat
    21541 taagattatg acttcaggcc gtctgaatgg tgcggatatt gcccgtagcg aatggtatcg
    21601 tgaaggtcgc gtgccattgc atactttacg tgcaaatgta gattatgcaa ccagcgaagc
    21661 gcacaccaca tatggtgtat tgggtctgaa agtttgggtt tatacggaag gcaatattaa
    21721 atcttccaaa cctgaacatg agagtaaaca aagaaaggca ggtagacgta atgctgcagc
    21781 caactagact gaaataccgt aagcaacaaa agggtcgcaa tactggcatc gctactcgcg
    21841 gtaataaggt aagtttcggt gagttcggct tgaaagccgt aggtcgtggt cgtttgactg
    21901 cccgtcaaat cgaagctgct cgtcgtgcaa tgacccgtca tatcaaacgt ggtggtcgta
    21961 tttggattcg tgtattccct gataaaccga ttactgaaaa gcctattcaa gttcgtatgg
    22021 gtggcggtaa aggtaacgtg gaatattaca ttgccgaaat taaaccaggt aaagtgttgt
    22081 atgaaatgga tggcgttcca gaggaactgg ctcgtgaagc attcgagttg gctgctgcca
    22141 aattgcctat tcctacaacc tttgtagtaa gacaggtggg tcaataatga aagcaaatga
    22201 attgaaagac aaatccgttg agcagttgaa tgcagatttg ttggacttgt tgaaagctca
    22261 gtttggctta cgtatgcaaa acgctaccgg tcaattaggc aaaccaagtg aattgaaacg
    22321 tgtacgtcgc gatattgctc gtattaaaac cgttttaact gaaaaaggtg ctaagtaatg
    22381 agcgaaacta aaaatgttcg tactttgcaa ggcaaagtag taagcgacaa aatggataaa
    22441 accgtaacag tattggttga gcgtaaagta aaacatccgc tgtatggtaa gattattcgg
    22501 ttatctacta aaatccatgc ccatgatgaa aataatcaat atggaattgg tgatgtggtt
    22561 gttatatcgg aatcccgtcc attgtcaaaa actaaatctt gggttgtcag tgagctggtt
    22621 gagaaagcac gttctattta agaattaaag caacgtgctt ggaatgggaa acgaagtatt
    22681 gcagcaaatt taatttgcgt gtaaacttcg tttcctgtct ttcagtttct tctggaagtt
    22741 tcttcccttt cggggtccaa gactggttta cttgaaccgc aaggtttcat ttaataagca
    22801 gcggctttgc tgtaagttat ctgaaagtgg taaattaagt tggttaattt aaaggtaata
    22861 acatgattca aatgcagacc atcttagatg tggctgataa ctctggtgcg cgtcgcgtaa
    22921 tgtgtatcaa ggtattgggc ggatctaagc gtcgctacgc ttctgttggc gatattatta
    22981 aagtggcagt taaagatgcg gctccgcgtg gccgtgtcaa aaaaggcgat gtatataatg
    23041 cggtagttgt tcgtactgct aagggtgtac gtcgtcctga tggtgcgtta attaaattcg
    23101 ataacaatgc cgccgtgtta ctgaataata aacttgaacc tttgggtact cgtatctttg
    23161 gtccggtaac ccgtgaattg cgtactgagc gatttatgaa aatcgtttca ttggcacctg
    23221 aagtattata aggaatggca cgatgaataa aatcattaaa ggcgataggg ttgtagtaat
    23281 tgctggtaag gataaaggta agcagggtca agtagttcga gtgttgggtg ataaagttgt
    23341 tgttgagggc gttaatgttg taaaacgcca tcaaaaacct aatccaatgc gtggcattga
    23401 gggcggtatt attactaaag aaatgccttt ggatatttct aatatcgcaa tcctgaatcc
    23461 ggaaactaat aaagcggacc gtgttggtat taagctgatt gaaaatgaag gcaaagttaa
    23521 acgcgttcgt ttcttcaaat caaatggctc tatcattggg gcataaggag ataacatggc
    23581 tcggttgaga gagttttata aagagacagt tgttcctgaa ttggttaaac aatttggtta
    23641 caaatcagta atggaagtcc cgcgtattga aaaaatcacc ttgaatatgg gtgtgggtga
    23701 ggctgttgct gacaaaaaag ttatggaaca tgctgtttcc gatttagaga aaattgccgg
    23761 tcaaaaaccg gttgttactg ttgcccgtaa atctatcgca ggttttaaaa tccgtgataa
    23821 ctatccggtt ggttgcaaag taacattgcg tcgtgatcaa atgtttgaat tcttggatcg
    23881 tttgattact attgcattac ctcgcgtacg tgacttccgt ggtgtgagcg gtaaatcatt
    23941 tgatggccgt ggcaattaca atatgggtgt tcgtgagcaa attatttttc cggaaattga
    24001 atacgataaa attgatgctt tgcgtggttt gaatattact attactacta cagcaaaaac
    24061 cgatgaggaa gcgaaagctt tattgtcatt gtttaaattt ccgttcaaag gataatcatg
    24121 gctaagaaag cacttattaa tcgtaatctg aaacgtcaag ctttggctaa aaaatatgcg
    24181 gctaaacgcg cggcaattaa agcggtaatc aatgattcga atgcaactga ggaagagcgt
    24241 tttgaggctc gtttgaggtt tcaatccatt cctcgtaatg cggcacctgt gcgtcaacgt
    24301 cgtcgttgtg ctttgacagg tcgccctcgt ggtactttcc gtaaatttgg tttgggtcgt
    24361 attaaaatcc gtgaaatcgc catgcgtggc gaaattccgg gtgttgttaa agccagctgg
    24421 taataggagt aattaagaat gagtatgcat gatcctattt ccgatatgtt gactcgtatc
    24481 cgcaatgcgc aacgtgctaa taaagcagcg gttgcaatgc cttcttcaaa attaaagtgt
    24541 gctattgcaa aggtattgaa agaagaagga tatattgagg acttcgcagt ttcatctgac
    24601 gtaaagtcta tattggaaat tcaattaaaa tactatgcag gtcgtcctgt aattgaacaa
    24661 atcaagcgtg tatctcgccc cggtttgcgt atttataaag cgtctagtga gattccaagt
    24721 gttatgaatg gcttgggtat tgctattgtt agtacttcta aaggtgtaat gactgatcgt
    24781 aaagcacgtt ctcaaggtgt tggtggtgag ttgttatgca ttgtagccta gtggaggaaa
    24841 agaaatgtca cgtgtcgcaa aaaacccagt gactgttccc gctggtgtag aagtaaaatt
    24901 tggaacagag gcattagtta ttaagggtaa gaacggtgaa ttgtcttttc ctttgcattc
    24961 tgatgtagcc attgaattta atgatggcaa attggctttt gttgcgaata acagcagtaa
    25021 acaagcaaat gcaatgtctg gtactgctcg cgcattagtc agcaatatgg ttaaaggtgt
    25081 ttcagaaggt tttgagaaaa gattgcaatt gataggtgtg ggttatcgtg ctcaagcaca
    25141 aggtaaaatc ttgaatctgt ctttgggttt ttctcatccg atcgtatatg aaatgcctga
    25201 aggtgtctcc gttcaaactc ctagccaaac agagattgtt ttaaccggct cggataaaca
    25261 agttgttggt caagttgctg ctgagattcg tgcgttccgt gctcctgagc cttataaagg
    25321 taaaggtgtt cgctatgtag gagaagtagt ggtaatgaaa gaagccaaga aaaaataatt
    25381 gaggttcact aatggataaa catacaaccc gactccgtcg tgcacgcaaa acccgtgctc
    25441 gtattgcgga cttgaaaatg gtaagattat gtgtgttccg aagcaataat catatttatg
    25501 ctcaagtaat tagtgctgaa ggtgataaag tattggctca agcctctaca ttggaagctg
    25561 aggtgcgcgg tagtctgaaa tctggaagca atgttgaagc agctgcaata gttggtaaac
    25621 gtatcgctga gaaggctaaa gcagcaggtg tagaaaaggt tgcttttgat cgttcaggtt
    25681 tccaatatca cggtcgtgtg aaggctttgg ctgaagctgc tcgtgaaaat ggtttaagct
    25741 tctaaatatt tggagacttt cagatggcaa aacatgaaat tgaagaacgc ggtgacggtc
    25801 tgattgaaaa gatggtcgca gttaaccgtg taaccaaagt agttaaaggt ggtcgcatta
    25861 tggctttctc tgcgctaact gttgttggtg atggagatgg tcgtattggt atgggtaaag
    25921 gtaagtcaaa agaagtgcct gttgcagtcc aaaaggcgat ggatcaagca cgacgctcta
    25981 tgattaaggt accattaaaa aatggtacga ttcatcatga ggttattggt cgacatggtg
    26041 ctactaaagt atttatgcag cctgctaaag agggtagtgg cgtaaaagcc ggtggaccta
    26101 tgcgtttggt ttttgatgct atgggcattc ataatatctc cgccaaagtg cacggatcta
    26161 ctaacccata taatatcgta cgtgcaacat tagatggttt gtctaagttg catactcctg
    26221 ctgatatcgc agccaaacgt ggcttgacag tggaagacat tttgggagtt aaccatggct
    26281 gaacaaaaaa agattagggt tacattggtt aaaagcctga ttggtacaat tgaatctcat
    26341 cgtgcatgtg cacgcggttt aggtttgcgt cgtcgcgagc atacggtaga ggttttagat
    26401 acccctgaaa accgtggtat gattaataaa atcagctact tgttgaaagt ggagtcttga
    26461 tatgtttttg aatacaattc aacctgctgt tggtgctacg catgctggtc gtcgtgttgg
    26521 acgcggtatt ggtagtggtc ttggcaaaac gggtggtcgt ggtcataaag gtcaaaagag
    26581 tcggtctggt gggtttcata aggtgggttt cgagggtggt caaatgccct tgcaacgacg
    26641 cctccctaaa agaggtttta aatctttaac agcatcagct aatgcacagc ttcgtttaag
    26701 tgaactggaa tcaattgctg ttaatgagat tgatattttg gtcttaaagc aagcgggtct
    26761 gattgcatct acagtctcta atgttaaagt tattgcttct ggtgaaattt ctaaggcagt
    26821 tgctttgaag ggtattaaag ttaccaaagg tgcgagagct gctatcgagg ctgttggtgg
    26881 taagattgaa atgtaaggtt taatattgtg gctaatcaac aaacgtcatc aggttcatcc
    26941 aaatttggag atcttaagaa acgtcttttg tttctatttg gagcattgat tgtttttcga
    27001 attggtgccc atatacccgt acctggagtt gatgctgttg ctttagctaa attatacgaa
    27061 agcgctggaa acggcatcct gggaatattg aatatgtttt ccggtgggtc gttagagcgc
    27121 tttagtatat ttgcaatagg aattatgcca tatatttcag cttctattat tgtacagctc
    27181 gcttctgaaa ttttgccatc attgaaggct ttaaaaaaag aaggggaggc tggtagaaag
    27241 gtaattacga aatatactag gtatggtact gttttgttag caattcttca aagtctaggt
    27301 gttgcatctt tcgtatttca gcaaggaatt gttgtaacaa gttcatttga gtttcatgtt
    27361 tccacggtag tttctttggt aacgggaacc atgtttctta tgtggcttgg ggagcaaatt
    27421 actgaaaggg gtatcgggaa cggtatttct ttaatcatta cggcaggtat tgcttcaggt
    27481 attccttcgg gtattgcaaa gctggttaca ctgacgaacc aaggttctat gagcatgctt
    27541 acggcgttgt ttattgtatt tggtgcctta ttattaattt atttggttgt atactttgaa
    27601 agtgcacagc ggaagattcc tattcattat gcaaaacgcc agtttaatgg tagggcgggt
    27661 agtcaaaata cgcatatgcc tttcaagttg aatatggctg gtgttattcc cccaattttt
    27721 gcttccagta ttattctatt tccatctact cttttaggtt ggtttggttc ggctgataca
    27781 aatagtgttt tgcacaaaat agctggattg ttacaacacg gtcaattgct gtatatggct
    27841 ttatttgcag cgacagttat tttcttttgt tatttttata cggctttggt ttttagccct
    27901 aaagaaatgg cagagaattt aaaaaagagt ggtgcttttg ttcctgggat tagacctggt
    27961 gagcagacct ctaggtattt agaaaaagtt gtattacgtt tgacattgtt tggagctctt
    28021 tatattacaa ctatttgttt aattccagag ttcttaacta cggttttaaa tgtacctttt
    28081 tatttgggtg gcacgtcttt gttgattcta gttgttgtaa cgatggattt tagtacacaa
    28141 ataaattcgt ataggcttac tcaacagtat gataagttaa tgactcgttc agaaatgaaa
    28201 tcattttctc ggaaatagaa ttatggcgaa agaagatact atccaaatgc aaggtgaaat
    28261 tcttgaaact ttacctaatg caacatttaa agtaaaactt gagaatgacc atattgtatt
    28321 gggtcatatt tctgggaaga tgcggatgca ttacattcgt atttctccgg gagataaggt
    28381 cacagtagag ctgacacctt atgatctaac tagggctcga atcgttttca gagcaagata
    28441 aaccaataaa aggaaaataa aatgcgtgta caaccatctg ttaagaaaat ttgccgaaat
    28501 tgcaagatta ttcgtcgaaa tcgtgtagtt cgtgtaattt gtactgatct ccgtcacaaa
    28561 cagcgtcaag gttaatggaa tatttctttt aatgtgattc tgtgatatag tgacacactt
    28621 tgccctaaaa aggaaaaaat atggctcgta ttgcaggggt aaatatccct aataacgcac
    28681 acatcgtaat tggtcttcag gctatttacg gtattggtgc tactcgtgct aaattgattt
    28741 gtgaggctgc aaatattgcg cctgatacta aagcaaaaga tttggacgag actcaattag
    28801 atgctttgcg tgaccaagtt gccaagtatg aagtagaagg tgatttgcgt cgtgaggtaa
    28861 ctatgagtat caagcgattg atggacatgg gctgctatcg tggcttccgt catcgtcgcg
    28921 gcttaccatg ccgcggtcaa cgcactcgta caaatgcgcg tacccgcaaa ggtccgcgta
    28981 aagcgattgc tggtaagaaa taaattttaa ggaattttat taatggctaa agcaaacaca
    29041 gcttcacgtg tacgtaaaaa agtacgtaaa accgtgagtg agggtattgt gcacgttcat
    29101 gcatctttca acaataccat cattacaatc actgaccgtc aaggcaatgc gttgtcttgg
    29161 gctacctctg gcggcgctgg ttttaaaggt tctcgtaaaa gtacaccatt tgcagcacaa
    29221 gttgcagcag aagcagctgg taaagttgcc caagagtatg gcgttaaaaa tttagaggtt
    29281 cgtattaaag gtccaggtcc aggtcgcgaa tcctctgtac gtgctttgaa tgctcttggt
    29341 ttcaagatta ccagcattac tgacgttacc ccgttgcctc ataacggttg ccgtccgcct
    29401 aaaaaacgtc gtatttaata ttggagtgat ttgaaacatg gcacgttata ttggccctaa
    29461 atgtaagttg gcacgtcgcg aaggtacgga tttgtttttg aagagtgcgc gccgctcttt
    29521 ggattctaaa tgtaaaattg attccgctcc tggtcagcat ggtgcaaaaa aaccgcgttt
    29581 gtcagactat ggtttgcagt tgcgtgaaaa acaaaaaatc cgccgtattt atggcgtatt
    29641 agaacgtcag ttccgtcgtt atttcgcaga agctgatcgt cgtaaaggtt ctaccggcga
    29701 gttgctgttg cagttgctgg aatctcgttt ggataatgtc gtttatcgta tgggtttcgg
    29761 ttctacccga gctgaagcaa gacagcttgt ttctcataag gcgatagttg tgaatggaca
    29821 agttgtcaat attccttctt tccaagtgaa agctggtgat gttgtctcag ttcgtgaaaa
    29881 agccaaaaaa caggtacgta ttcaagaagc attgggtttg gcaactcaaa tcggcttgcc
    29941 gggttgggtt tctgtagatg cggataaact tgagggtgtg ttcaaaaaca tgccggatcg
    30001 ctcggaattg accggtgata ttaatgaaca gctggtggta gagttctact ctaaataatg
    30061 ctagctcagt gagggacagt taaatgcaga atagcacaac cgaatttttg aaacctcgtc
    30121 aaattgatgt aaatactttt tctgcaactc gtgcaaaagt atctatgcag ccatttgaac
    30181 gtggtttcgg tcatacctta ggtaatgctt tgcgccgtat cttactgtca tccatgaatg
    30241 gttttgctcc tactgaagta gctattgccg gtgtattaca cgaatattct actgttgatg
    30301 gtattcagga agatgttgtt gacattttgc tgaatattaa aggtattgtg tttaaactcc
    30361 atggtcgtag ccaagttcaa cttgtgttga agaaatcagg ttcaggtgtc gtatctgccg
    30421 gtgatattga gttgccgcat gatgtagaaa ttctgaatcc tggtcatgtc atttgtcatt
    30481 tggctgataa cggtcaaatt gagatggaaa ttaaagtaga gcaaggtcgt ggttatcaat
    30541 ctgtttcagg tcgtcaggta gttcgtgatg agaaccgtca gattggtgca atccagttgg
    30601 atgcgagctt ttcgcccatc agccgtgtta gctttgaggt tgaacctgca cgtgtagagc
    30661 agcggacgga tcttgataag ttggttttgg atatcgaaac cgacggttct attgatcctg
    30721 aggaagctgt acgcagtgcg gcacgtattt tgattgatca gatgtctatt tttgctgatt
    30781 tgcagggtac gcctgtggag gaggttgaag aaaaagcacc tcctatcgac cctgttcttt
    30841 tgcgtccggt ggatgatctg gaattgacag tacgttcagc taattgtttg aaagctgagg
    30901 atatttatta tattggcgat ttgattcaac gcactgaaac cgagcttctt aaaacgccga
    30961 atttgggacg taaatctttg aatgagatta aggaagtatt ggcatctaaa ggtttgacac
    31021 tgggttctaa gttggaagca tggccacctg taggcttgga aaagccttaa tgaagaatta
    31081 aaggataatt gatatgcgtc atcgtaatgg caatcgcaaa ttaaaccgta ccagcagtca
    31141 tcgtgctgca atgctgcgta atatggcgaa ttcattattg actcacgaaa ctattgtaac
    31201 aactctgcct aaggccaagg aattgcgccg tgtagtagag ccgttgatta cattgggtaa
    31261 aaagccgtca ttggcaaacc gccgtttggc atttgaccgt actcgcgacc gtgatgttgt
    31321 agtaaaactg tttggcgatt tgggtcctcg ttttactgct cgtaacggtg gttatgttcg
    31381 ggtgttgaaa tacggattcc gtaaaggtga taatgcacct ctggcactgg ttgaattggt
    31441 tgacaaaccg gctgctgagt aattttagtc atataacgcc atctgccgaa aagcaggtgg
    31501 cgttattttt gcaatatctg ataggtaata gggtattggc tatcatgttt aaaatattaa
    31561 ttgaatagct aaggtttgcg cggtaaactt acatcattaa aaaattctat gatggtttat
    31621 ataatgaatg ctttcgatat aaagtcgaca aagatggacg tattgtctat atctttgcat
    31681 acgtcagact tgtttgattt ggaagatgtg ctggtcaaat tgggcaagaa gtttcaagag
    31741 tctggtgttg ttccatttgt gctggatgtt caagagtttg attatcccga gtctttggat
    31801 cttgctgcat tggtttcgtt gttttcaagg catggtatgc aaattttggg tctgaagcat
    31861 tctaatgaac gttgggctgc tgcggctatg aagtatcatt tgctgttttg tctgtctcat
    31921 tcggaaaatg ttaaagaact gggtcaggtt gaggtgcaga acacggagga tggtcagaaa
    31981 gcaaggaaaa cagtattgat tacatcccct gtccgtaccg gtcagcaggt ttatgccgaa
    32041 gatggcgatt tgattgttac gggggcggtc agccaggggg cggaattgat tgcggatggc
    32101 aatatacata tttatgcgcc gatgaggggg cgtgctttgg ccggtgccaa gggtgatact
    32161 tctgcccgca tatttatcca ctccatgcag gcagaactgg tttctgtggc gggtatttac
    32221 cgtaattttg aacaggattt gccgaaccat ctgcacaagc agccggtaca gatattgttg
    32281 caggataacc gattggttat cagtgcaatt ggctcagagt aattgtttga tatttaaaaa
    32341 ggaaatattg tggcaaaaat tattgtagta acttcaggta agggcggtgt cggtaaaacg
    32401 actaccagtg ccagtattgc gacaggtttg gcattacgcg gatataaaac tgcggtaatt
    32461 gattttgatg tgggtttgcg taacctcgac ctcattatgg gttgcgagcg tcgtgtcgtt
    32521 tatgacctga tcaatgtcat tcagggggag gcgacgctca accaagcttt gattaaagat
    32581 aaaaattgtg aaaacctgtt tattttgccg gcttcccaga ctcgggataa agacgctttg
    32641 acacgcgagg gcgtagaaaa agtgatgcag gagctgtccg gcaagaaaat gggctttgag
    32701 tatattattt gcgactctcc tgccggtatt gagcagggtg cattgatggc gttgtatttt
    32761 gctgatgaag ccattgtaac gaccaatcct gaggtttcca gtgtgcgtga ctccgacagg
    32821 attttgggaa ttttgcaaag caaatcccat aaggcagagc aaggcggttc ggttaaagaa
    32881 catctgttga ttacgcgtta ttctcccgaa cgtgtggcaa aaggcgaaat gctgtctgta
    32941 caggatattt gcgatattct gcatattcct ttgctgggtg tgattcctga atcccaaaac
    33001 gtcttgcagg catccaattc cggagaaccg gtcatccatc aggacagcgt ggcggcttcc
    33061 gaggcatata aggacgttat tgcccgtctt ttgggcgaga accgtgaaat gcgtttcttg
    33121 gaagctgaga aaaaaagctt cttcaaacgt ctgtttggag gataagatat gtcattaatc
    33181 gaatttttat tcggcagaaa gcagaaaacg gcaaccgttg cccgcgaccg ccttcaaatc
    33241 atcattgccc aagagcgcgc ccaagaaggt caggctccgg attacctgcc gactttacgt
    33301 aaagagttga tggaagtcct gtccaaatat gtgaatgttt cattagacaa tatccgtatt
    33361 tcccaggaaa aacaggatgg tatggatgtg cttgagttga acattacttt gccggaacag
    33421 aaaaaggtat aggacatgac cttaaccgaa ttgcggtaca tcgtcgcagt cgcccaagaa
    33481 cgtcatttcg gcagggcggc gcggcgttgt tttgtcagtc agcccacttt gtctattgcc
    33541 attaagaaat tggaagaaga gcttgccgtc tctttgtttg accggagcag caacgatatt
    33601 attacgaccg aggcggggga acgtatcgtt gcacaggcgc gtaaggtgtt ggaagaggca
    33661 gagcttatca ggcatttggc aaatgaagaa caaaacgagc tggagggtgc gttcaaactc
    33721 gggctgattt ttacggttgc gccgtacctg ctgccgaaac tgattgtctc gttgcgccgt
    33781 actgcaccga aaatgccttt gatgttggaa gagaattaca cgcatacttt gaccgagtcg
    33841 ctcaaacgcg gggacgttga tgcgattatc gttgccgaac cgtttcaaga gccgggcatt
    33901 gttaccgaac ccttgtatga cgaaccgttt ttcgtgattg tcccgaaagg gcattcattt
    33961 gaggaactgg atgccgtttc gccccggatg ctgggtgagg agcaggtttt gctgctgacg
    34021 gaaggcaact gtatgcggga tcaggtactc tcaagctgtt ccgaattggc ggcgaaacaa
    34081 cgcatacagg ggttgaccaa tacattgcag ggcagctcga tcaatacaat ccgccatatg
    34141 gtcgccagcg gtttggcaat cagcgtgttg ccggcaaccg cactgaccga gaacgatcat
    34201 atgctgttca gcattattcc gtttgagggt acgccgccaa gccgacgggt cgtattggcg
    34261 taccgccgca attttgtccg tccgaaggcg ttgtcggcga tgaaggcggc gattatgcag
    34321 tcgcagcttc acggggtaag ttttatccgc gactaggcgc aggcattgtt ttcaaaacgc
    34381 catttccctg agccgacaac acggtatgcc aagatattgc cgtcatcatc gattttgagt
    34441 atagcatcgc cacggaaact gccgtcctga agatattcga cttttgcatc actgtgaatg
    34501 ttttcatcag tgccgataca atgccatgta tagtggatta acaaaaacca gtacggcgtt
    34561 gcctcgcctt gccgtactat ttatactgtc tgcggcttcg tcgccttgtc ctgatttttg
    34621 ttaatccact ataaaagagg ccgtctgaaa aacatttttc agacggcctt gtttattcaa
    34681 tcaaatcagt ctttcaactt cgccaactga ttttgaactt ttgccatttt gtcttccaat
    34741 tccgccaaat cggctttgtc tttttccacc agatgcgcag gggctttttc ggtgtagccg
    34801 ggtttggaga gtttggcgtt gagtttgtcc aaggcttttt gcagcttctc ggcttctttg
    34861 ctcaaacggg cggtttccgc agctttgtcg atttcgactt tcaacatcag gcgcgcgccg
    34921 ttgcagacgg cgacgggcgc gtcttcgctt tcgggtaggg cggcgacttg ctgtgcttcg
    34981 atcaggcggg tcatcatcgg caggtatttg aggtagtccg ccaagtcgtc cgtgctttcg
    35041 acaaacagcg gggctttcac attgggctgg atgcccattt cgccgcgcag gttgcggact
    35101 gcgccaatca aatcctgcaa cacggtcatt tgctcgaatg ccgtctgaac aatatcgccg
    35161 ccgtcggctt cggggaagcg ggcgagcatg atgctgtcgg cggttttcgc gtcgcacata
    35221 ggagcgacgg tttgccacaa ttcttcggtg atgaacggga taatcgggtg cagcaggcgc
    35281 agggcggctt cgagtacgcg caacaaggta tggcgtgtgg cgcgttggcg gctggcgcag
    35341 ccggtttgaa gctgcacttt ggcaagttcc aaataccagt cgcaatagtc gttccacatg
    35401 aagctgtaca gggtttccgc tgccaaatca aagcggtagg tttcgtaggc ttgcgttact
    35461 tgctcgatgg tctgattcag acggtctaca atccacatat cggggaagga atagccgcgc
    35521 ggctcagtgg cggttgcgcc gtagccgcag tcttggtttt cggtgttcat caagacgaag
    35581 ttggtggcgt tccagatttt gttgcagaag ttgcggtagc cttcggcgcg tttgaagtcg
    35641 aagttcacgc tgcgccccaa gctggcgtag ctcgccatgg tgaagcgcaa agcgtccgcg
    35701 cccatactcg gaatgccttc ggggaagagt tttctcgagg cttcttccac tttcggcgcg
    35761 gtttcgggtt tgcgcagacc ggtggtacgt ttcaccagca gtttttccaa gtcgatgccg
    35821 tcgatcaaat ccacagggtc aatgacgttg ccttcggatt tggacatttt tttgccttcg
    35881 tggtcgcgca cgatgccgtg gatgtacacg tctttaaacg gtactttgcc ggtaaagtgg
    35941 gtggtcatca taatcatgcg cgccacccag aagaagatga tttcgtagcc ggtaaccaag
    36001 acgttggacg gcaggaaggc tttgagttcg tcggtttcag acggccagcc gagcgtggag
    36061 aacggcacga gtgcggagga gaaccatgtg tccaatacgt cttcttctcg ggtcaagcct
    36121 gttttgccgg cttgtttttc ggcttcttcc tgattgcggg caacgtacac attgccttcg
    36181 ttgtcgtacc atgcagggat ttgatgcccc caccacagtt ggcgcgagat gcaccagtct
    36241 tggatgttgt tcatccattg gttgtaggtg ttgacccagt tttcggggat aaagcgcacc
    36301 gcgccgctgt cgacggcttt tttggctttg tcagcaaggc ttaagccttt gaattcgctg
    36361 tcaggctcgc cgccgtttgg cgtggcggac atggcgacaa accattggct ggtcagcatc
    36421 ggctcaatca cggaaccggt acggtcgcct ttcggcgtca tcagcgtgtg cgctttgatt
    36481 tcgaccaaga aaccttgttc ctgcaaatcg gcaaccattt gtttgcgcgc ggcaaagcgg
    36541 tccaagcctg cgtatttttc aggcagggca aagcttggtt gcgcttcgcc tttgaagttg
    36601 aacacttcgg cgtttgccaa tactttggct tccaagtcga acacattaac caagcgcgta
    36661 tcgtggcgtt tgccgacttc gtagtcgttg aagtcgtgcg caggcgtgat tttcacgcag
    36721 ccggtgccga agtctttttc aacgtattcg tcggcaatca cgggaatggt gcggccggtc
    36781 agcggcagga ttaattcttt gccgattaag tgggtataac gttcgtcttc gggattgatg
    36841 gcaacggcaa cgtcgcccaa cagcgtttcg ggacgggtgg tggcgacgat gacggcttcg
    36901 gcaggattgt ccgccagcgg atagcggatg tgccacatag agccttgttc ttccacgctt
    36961 tccacttcca aatcagacac tgcggtaccc aataccggat cccagttcac caagcgtttg
    37021 ccgcgataaa tcaagccctg ttcatacagg cgtacgaaca cttcggttac ggtttcggcg
    37081 cgtacatcgt ccattgtgaa atactcgcgc gtccagtcgg cagaacagcc cacacggcgc
    37141 atctgctgcg taatcgtgcc gccggaaact tctttccatt cccacacttt ttccaagaat
    37201 ttttcacgac ccaagtcatg acgggacacg ttttgcgcgg caagctgacg ctcgaccacg
    37261 atttgcgtgg cgatgcccgc gtggtcggtg ccgggaatcc aggcggtgtt gcagcctttc
    37321 atacggtagt agcgggtcag gccgtccata atggtttggt tgaaggcatg acccatgtgc
    37381 agcgtgccgg ttacattggg cggcggcagt tggatggaaa aagacggttt ggtcaaatcc
    37441 atatcaggtt ggaaatagcc ctgctcttcc cagttttgat aatgtttgga ttcgatttcg
    37501 gcgggggagt atttgtctaa catgatggaa ctttgtgaaa ttaaggttat ttttgatgtg
    37561 cggattataa cgcaaaaagg ccgtctgaat catttcagac ggcctttggc atacaggttt
    37621 taaaaatgga acaataccag gctgacggca atcaccgcca tgcccattgt caggccgtaa
    37681 acggtttcat ggccgtctga atagcgtttg gcagccggca gcagctcgtc caacgccaaa
    37741 aacaccatca caccggctat cacgccgaat accgaaccaa acacggcagg cgacaaaaac
    37801 ggctgcaaaa ccaaatagcc caaagccgcc cccaacggct cggccaagcc ggatagcaga
    37861 cacgcccaca ccgttttctt acggctgcgg gtggcaaaat aaaccggcgc ggcgatggaa
    37921 atgccctccg gaatattatg gatggcaatc gccaaggcca aaggcatccc gactgctgga
    37981 ttttccaatg tggcaaaaaa cgtcgccaag ccttcgggga aattgtgcgc agtaatcgca
    38041 aacgccgcca tcatgccgac tcgcgcgata tggcggcgtt tgctttcttg aaacgacggg
    38101 tcttgcgcgt ctaaagtttc atgcgggttc ggcaccagac ggtcaatcag cgcaatgccg
    38161 cccatccctg ccaaaaatgc catggtcgcc gccgcaaacg cgtggtcttt atcataaatt
    38221 tcagcgaacg cctcgctgga cttactgaaa atctccgtca gggaaacata caccatcgca
    38281 ccgccggcaa atgccaaacc aaacgacaac acgcgcggat tgggcgtttt ggaaaacatc
    38341 accaagccgc tgcctaatac ggtaaacaaa ccggcagcca acgtaatgga aaaggcaacg
    38401 gccaaattgg acatcgaaaa atcgggcatg ggaaaacctg cgctaaaagc tgggacaggt
    38461 tcagactaac actttttaat gcgtatgata atagttatta tttattttat tgattggata
    38521 cccgaatttt gaaacaaaag gccgtctgaa aaatgatttt cagacggcct ttaaatttga
    38581 aatgtcgcta aaccttatcg ctttccagct taagcctgat agcgcgacag gctcaaatcg
    38641 tcgcttcgga tttcggtgtc tttgccgctc acgatatcgg cggttaattt tgccgaaccc
    38701 agcgacatgg tccagcccaa agtgccgtgg cctgtattca agaataagtt ttcaaagcgg
    38761 gtgcggccga ttaacggcgt gctgtcgggc gtcatcggtc tgaggccgct ccagaacaat
    38821 gcttggctca aatcgccgcc ttccgggaac aaatcgttga cgaccaaagc caaggtttcg
    38881 cggcgttttt cgggcagttt gatttcgtag cccgacaatt ctgccatgcc gccgacgcgg
    38941 attctgttgt caaagcgcgt gatggcgact ttgtagcttt catccaaaac ggtggacacc
    39001 ggcgcgccgt ctgaattggt gaccggcagg gtcaaggaat agcctttgac gggataaatc
    39061 ggcagatcga ggtctaactg cgccaacaca gtcctactga agcagccgag cgcacagaca
    39121 acggcatctg cttcaaaccg ccctgtttcg gtttcaacgg ctttgatgcg cagcccgtta
    39181 tggtcgatgc ggctgatggt ttggttgaaa tgaaactgta cgcccttttc ctgacacaat
    39241 ttgtataggt tttcagtgaa gaggtggcag tcgccggtcg catctgcagg caggtgcagg
    39301 ccgccggcaa ttttggcggt aacgcgtgcc agcgcaggct caaattctgc acattcttcg
    39361 ggtttcagac ggcggtacgg cacgccgtag cgttccaaaa cggcaatgtc ttgttctgcc
    39421 gcttcgactt ctttggtttg gcggaaaatc tgcaacgtcc cttttttgcg ttcctcaaaa
    39481 ttcatgccgg tttgcgcttc aaaacggcgg aacatttcac ggctatattc ggaaatcctg
    39541 accatgcgct ctttattggt ttgatagtgc gctgccgtgc agttttgcag catccgccac
    39601 agccattcga tttgatacag gctgccgtcg gggcgaaaca gcaaaggcgg atggctttta
    39661 aacagccatt tcagtgcttt ggtcggaata ccgggtgcag cccaaggcgt ggtatagccg
    39721 taagaaagct ggcctgcatt ggcaaaactg gtttccatcg ccacaccctt ggcgcggtcg
    39781 atgaccgtta cttcatgtcc ggcctctgcc agataccacg cggaagacac gccggcaaca
    39841 cccgcaccta aaacaagcac tttcatgttt ctccctccga ctttttttaa tatgccgtgc
    39901 cgtctgaata ttcggattca gacggcctcg gatattaatg cggcaattcg ccgtttgtga
    39961 ttttttgttt gaagtcgcgc gtttcattga cgatgacttt cgccatcaat aaaagtgcaa
    40021 tcaggttggg caatgccatc aagccgttga atgtgtccga agccagccac accaaatcaa
    40081 ggctcaacac ggtacccagc ataacggaag aaacataacc cacgcggtac aaaccggcaa
    40141 atttctcgcc gaaaacatac accgcgcatt tttcgccgta atagcaccag cccaaaatgg
    40201 ttgagtaggc aaagaaaatc aggccgatgg taacaatcca gccgccgatg ccgggcagca
    40261 ttttttggaa tgtgacggtt gtcagtgccg cgccgctcac ttcaggtttg acaaactcgc
    40321 cgcccgcgcc gagcagtccc attaccaaca cgatgccggt aatcgagcaa acgacgatgg
    40381 tatccaaaaa cgtaccggtc atagaaacca aggcctgacg gacgggatgg tcggttttcg
    40441 cggctgcggc ggcaataggc gcagaaccca tacccgcctc attggagaac acgccgcgcg
    40501 ccacgccgta gcggatgacc gtaccgatag cgccgcccgc cactgcctgc gcgctgaacg
    40561 catcggagaa aattagcttg acggcaggca tcagtgcatc ggaattaatc gcgataatgg
    40621 aaagaccgcc caacacataa aacaccgcca tagcaggcac gatgaaagaa gcggctttgg
    40681 cgatgccttt aataccacct aaaacgacaa cggcagtcag aacggtcaac gtaatgccgg
    40741 tataggcagg ttcgataccg aagctggttt gcaccgcctg tgcaaccgag ttggactgca
    40801 ccgagctgcc gataccgaag gaagcgaatg tgccgaataa agcgaacgcc aacgccatcc
    40861 atttccagtt tttgcccaag cctttttcga tgtaatacat cgggccgccg gacatttcgc
    40921 ctttggaatt gttgacgcgg tatttcaccg ccaacacgcc ttcgccgtat ttggtggcca
    40981 tgccgaaaat ggcggtcatc cacatccaaa ataccgcgcc cgggccgccg gttaccaccg
    41041 cagtcgccac gccggcgatg ttacccgtac cgatggtggc ggacagcgcg gtcatcaacg
    41101 ccgcgaaatg ggaaatatcg ccttcgtggc cttcgccgct tttatgcttc tttggcggca
    41161 caaacgcctg tttcagcgca taacccaaca tcgtgaactg caaacctttt aataaaacag
    41221 tcagcaaaat acccgtgccg accagcagca tcaacataac aggtccccaa acccagccgc
    41281 tgacggtttc aaaaaaggct ttgggattgt ctaaaaacac ttgcatggct ttctcctttg
    41341 tctgttttat ttttaaaaca ccacttttgt agtgtccagt aatttcagca cagaatatcc
    41401 aataagacaa tatgttcttt tgaaaaatac ttttggtttt tttcgccgaa aacaggccgg
    41461 ttcaagctgc ggaaattgtt tgcaattctt taaaagcagc ggcggaggtc acaatgaaat
    41521 gtccgaatgg ggatgtggcg ggcggcagaa atcatcaatg ctgccgactg ccatacttct
    41581 gaaatctaca aaatgatgca tcgatcaaac aatataccgc tttaaaaaaa ccgatgccgt
    41641 ctgaaacgct gtcggggttt cagacggcat caaaagggta cggtcagcgg atgatgccgc
    41701 gtgccgattg tgcgaaaaag tctcggaata cggcaagctc ggcttgggtt tcggcgtggc
    41761 ggagaatgtc tgccttggct tcttcaaacg gaatgccgcg atggtagagg gttttgtaca
    41821 cgtctttgac ggcggaaatc tgctctgcgg taaaaccgtt gcggcgcatg ccttcgctgt
    41881 tgagccccgc cggttcggcg cggtagcccg atgccataaa gtagggcggc acgtctttgt
    41941 gtacgcctgc ggcaaacgcg gtcatggcgt agtcgccgat gcggcagaat tggaaaacca
    42001 gcgtgtagcc gcccaaaacg acgtagtcgc cgatggtaac gtgtccggca agcgaggcgt
    42061 tgttggcgaa gatggtgtgg ttgccgacca cgcagtcgtg cgcgaggtgg cagtacgcca
    42121 taatccagtt gtcgtcgccg atacgggttt cgccgatgcc ggttaccgtg cctaaattaa
    42181 aggtggtgaa ttcgcggatg gtgttgccgt tgccgataat cagcttggtc ggctcgtcgc
    42241 ggtatttttt gtcctgcggg atttcgccga ggctggcaaa ttggaaaatg cggttgtttt
    42301 cgccgatgct ggtgtggccg ttgatgacgg cgtgcgggcc gatttcggta ttcgcgccga
    42361 tttggacgtt ggggccgatg acggtgtacg cgccgacttt gacgctggag tcgagttcgg
    42421 ctttggggtc gatgacggcg gtcgggtgga tgagggtcat gttttgaata ctccgctgct
    42481 tgttaagaca aataatagaa aattacagtt tgtcgatttc atcgcagacc gcaatcactt
    42541 gatcgctaaa atggctaaat actgaagcag tatctacatc catgtaatta agcagttcaa
    42601 aaatagattg gtgaatattt ctagcgtagt tggtatcttt tattgcacct ttaaaacaaa
    42661 tcggctcgtg atgtgccaaa cgattacgga atttgttaat attggaaagt tctcgaaaaa
    42721 tccatttttg gttatattgc acacttggtg tagatttggg cttttttgga aaaactttca
    42781 tcaatacttt ccctgtagca tcaaattggg catctttccc tcctgcaaac agataccgcc
    42841 aaaaaccgaa tcctagtcct gcaaccaatt ggttgtggtc aaactttccc ccgctattat
    42901 tttgtatttt agataatgca accttgatta attcagcaga ttctttcgtg ccatttctta
    42961 aaaagcaacc ttgatatttt aatgcgggat tcgtctgtgg ctgtatgctg ttatataacc
    43021 agtttctgtc tttaaacgcc tgctgaaggc aaatgtcaat tttgtttctt aaaacaatct
    43081 caaatattga aacaacatga aaaagttctc ttgataaaga taaattcaat aaatacaatt
    43141 cagctgcttt gtcttcccca acggcatttt tataccgttc cattctgaaa tcagaaaaaa
    43201 tactacagca ttccttataa tccacgctaa cacctgattc tttattttta aattgacgtt
    43261 tcaaactata tttgatacag ttaggtaaaa ctaatcccca ccgtgtccct gggtttgaat
    43321 aaacctaaac cggtgggttt tctttttatt aggtcgtctg aaactttcag acgacctttt
    43381 tccgaacgct caaaccacgc gtttggcaca catgatgatg gcttcgacgg cgacttgccc
    43441 gtccactttg gcaacggcgt tgaatttgcc gatgccgcgc cggctggtca gcagctcgac
    43501 ttcaaagacg agttggtcgc cggggatgac ttggcgtttg aaacgggctt cgtctatgcc
    43561 ggcgaagaag aagaattcgt tttctttgcg cccgccttcg ctcaaaatcg ccaacgtgcc
    43621 gcaggcttgc gccatcgctt cgatgatgag tacgccgggc atcacgggca ggtcgggaaa
    43681 gtggccttgg aactggggct cgtttatgct gacgttttta atcgcggtca gggttttcat
    43741 cggctcgaag gcggtgatgc ggtcgagctg gagaaacgga tagcggtggg ggatgagttt
    43801 ttggatgtct ttggcttcga tggggagttg tacgtccatg tctgtcgtat tccttgaata
    43861 aagtcggttt ggttatttgc tgtcttgacc ggcatctgaa agctgctgct ccagtgtttt
    43921 gagccgtttg ttcatttcgc ttaagcggtg gatgtaaaca gcgttgcgcg cccattcttt
    43981 atgggtggac atcgggaaga tgccggcgag gtgtttgccg ctttcggtaa tgctgtgggt
    44041 gacggacgtg ccgccgccga tggtggtttt gtcggcgatt tcgatgtgtc cgaccgtacc
    44101 gacgccgccg ccgatgatgc agtagctgcc tatggttacg ctgcctgaga tgccggtttt
    44161 ggcggcgatg acggtgtgcg aaccgatttt gcagttgtgt ccgatttgga cttggttgtc
    44221 gattttggtg ccgttgccga cggtggtgtc gctcatcgcg ccgcggtcga tgttggtgtt
    44281 cgagccgatt tctacgtcgt cgcccagcgt taccgcgccg gtttgcggga ttttaaacca
    44341 tgaatcgccg gcaaaagcga gtccgaaacc gtccgcgccg atgaccgcgc cgctgtggat
    44401 ttcgacgcgt ctgcccagtg tgcagccgta ataaacgacg gcgttgggat gcaggacgac
    44461 ttcgtcgccc agtttgcaat cgtgttggac gacggcgttt gccaagatgc ggcagccttc
    44521 gccgagcacg gtgtttgcgc cgatgtaggc gttcgcgccg atttcgcagc ttgcgggaac
    44581 ggtggcactc ggttcgacga cggcggtcgg atggatgccg ccgcgcgctt tgacgacggg
    44641 tgaaaacagg cgggcgactt tggcgaaata gagatagggg tcgtcggcga caatcaggtt
    44701 gcgcccttca aatccgtctg ccgctttggc ggaaacgatg accgcgcccg cgctgctgtc
    44761 gtggacttcg gctttgtatt tcggattggc aaggaagctg atgtgttccg cctgcgcgtc
    44821 tgcgagcggg cgcacggcgg taacggaaat gtcctcgccg cgccattcgc cgccgagccg
    44881 cgcggtgatt tgggacaggg tgtaggtggc cggaatcatg gttttcctgt tcggtatgcc
    44941 gtctgaaagg gtcagcgggc gttcatttct ttaatgacgc tgtcggtaac gtcgtattgg
    45001 gtgttgacgt aaatcacgtt ctgcaaaatg acatcgtaac cttcctgttt ggcgattttg
    45061 acgatgacgc ggttggcgtt ttgctggagg gaggcaaact cttcgttgcg gcggaggttg
    45121 tagtcttctt caaactgcgc ctgttttttg cggaacgctg cgaccagccc gcgccatttt
    45181 tcttcggctt gcgccttttt tgcgtttctg agtttgcctt cggcaagctg cctttccaaa
    45241 tccagacctt cgcgttgcag tttttgcaat tcgtcctgac gggcggaaaa ttcgctgtcc
    45301 agcgtttttt gaatcttgcg cgcctgcttg gattcgaggt agatgcgctc ggtgttgata
    45361 aagccgattt tttggaaggt gtcggcgtgc gcgcctgcgg tgcagcacaa accgatcaga
    45421 gccgcggcaa acgcgcgggt caaacgggtc atggtaaaac tccttcgaat gttgccgcga
    45481 aatgccgtct gaagggcttc agacggcatt tgcgggatta gaacgtcgtg ccgagttgga
    45541 attggaagcg ttggatttcg tcttccggtt ttttcttcag cgggtaggcg tagctgaatt
    45601 tcatcgggcc taaaggcgag agccaggtaa ccgcgccgcc ggcggaatag cgcaattcgt
    45661 tggtaaaggt ggatttatgg gtattgccgg cgccgtaaat gttttgaacc ctgccgccgg
    45721 tcgcggaact gctgttgtcg tcgtaggttt tgccgtccca cacgctgcct gcgtcggcaa
    45781 acaggctcag gcggacggtg cgcgcgtctt tcgcgccagg catcgggaag agcagctcgg
    45841 cggagacgtt ggcttttttg ttgccgccgt agctgatttt ttcgccgtat tcgtcataca
    45901 ctttcggacc gagcgtgccg ctttcgtatc cgcgcaccga acccaggccg ccgccgtaga
    45961 agttttcaaa gaaggggatt tctttggttc tgccgtagcc gcccgcaatg ccgacttcgc
    46021 cgccgagcat cagcgtgaag gttttgctta aggggaagaa ccaggtttgg ttgtgggtgg
    46081 cggagtagta ttgcagtttg ctgccgggca gggcgatttc ggcgttcacg cccgtcaggt
    46141 agccgcgcgt cggccataac gcgctgtcgg ttttgttgcg cccccagccg acggtacctt
    46201 tgtacagcca gcctttgaag ctgccgtctg tgccgtcggt tttgccgtat ttcttgataa
    46261 agtcggcata gtgtttgggc gctttgttgt aggtgttgac ggtcaggtgt tctgccacca
    46321 aaccgaaatt cacgcggtcg tattcggtaa caggcacgct catgcggatg cctgcgcctg
    46381 ccgtggtggt tttatattgt ttgatgctgg tcgatgcttt gcgcgggtcg aaggcttttc
    46441 cgtaaacatc gtagcccagg ctgaccccgt ctgccgtgaa gtacgggtcg gtaaacgaca
    46501 gcgagccgtt gagcgtggtt ttgcttcgtg aggcgcgcag ggcggccgac ttgcccgtac
    46561 cgaacaggtt gtcttgggaa acgcctgcgg acatgaccag gccggtatcc tgtacccagc
    46621 ccgcgcttaa gtcgagcgag ccggtggaac gttcggtcag gctcatgttc aaatcgactt
    46681 tgtcgggtgt gccggcaagc gggacggcat caaactgtac gttgtcgaag tagcccaaaa
    46741 gctcgacgcg ctctttggag cgttgcagct tggaggtgtc gtaaggcgcg gattccattt
    46801 ggcgcaattc gcggcgcacg acttcgtcgc gggttttgtt gttgccggtg atgtggattt
    46861 cgttgacgta gattttccgg cccggttcga tgtgcaggac gaaatcgacg gttttggttt
    46921 cggcgtttgg cagcggctgt acgctgattt cgctgtatgc gtagcctgcc gagcccatgc
    46981 ggttctgaat ctcacccaaa acggcggtca tctgctggcg ttcgtaccat ttgccgggct
    47041 tcatggtcag cagtttttcc agttcggctt tggggacttc gttggtgtcg ccttcgatgg
    47101 agactttgcc ccaacggaaa cgtccgcctt cgtggacggt gattttgatg gtctgcttgg
    47161 ttttgtcttc gttggtttgg atgtcggtat cgaggatacg gaaatcgaag tagccgttgt
    47221 tctggtagaa gtcggttact ttttccatgt cttgggcaaa tttctgctcg ttgaattggt
    47281 tgcttcgtgt cagccatgtc caaatgccgc cttcggtcag cgacatctgc cgcatcagtt
    47341 tgcggtcgga atagacttgg ttgccttcaa attcgatgtc ggtgattttg gcggatttgc
    47401 cctcgtcaat cgtgatgtcg atgtcgacgc ggttgcgggc gagtttggtt actttgggcg
    47461 tgatttggat attgagtttg ccgcgcccga ggtattcttc tttcaggccg gcgactgcct
    47521 gattgagtgt cgcctgatta aagtattgcg actgcgccag cccgaacgat tcgaggtttt
    47581 tcttaatggc gtcgttttgc agcatttttg cgccggtgat gttgagcgag ccgatggtgg
    47641 ggcgttcgat aacggtcagc aggagctgcc cgtccgcagt ttcgacgcgt acgtcgtcaa
    47701 agaaaccggt ggcgtacagg cttttgatga tggcactgcc gtgtgtgtcg ttgtaggtat
    47761 cgccgacttt gacgggcagg tagttgaata cggtgctcgg ctcggtacgc tgcaagcctt
    47821 cgacacggat gtcttggatg gtgaagtcgg caaatgccaa aggcgatatg cccaacatca
    47881 tcagtgcgga agcaatctgt ttcagtttca tcgtaagttc cttgtggtgc ggaatgcggt
    47941 ttcagacggc attccgaaac gtaaaatcta accgagcagc cgggtaacgt cgttgaagaa
    48001 ggcgaccgcc atcatcagca tcatgagggc aagcccgaag cgcaaaccga tgttttggac
    48061 gcgttcgccc aaaggtttgc cgcgtatcca ttcggcagta taaaacacga ggtggccgcc
    48121 gtccaaaacg gggacgggca gcaggttcag cacgccgagg ctgatgctga ccagtgccaa
    48181 aaattccaaa taactttgca agccgagttc ggcggactgt ccggcaatat cggcaatggt
    48241 cagcggaccg gaaatatggc tgacggaggc gttgccgctg attagtttgc cgaaaaattt
    48301 gagggttgtc cacgagtggg aaacggtttt ttcccagccc atgccgaatg cgcggataac
    48361 agacggacgg tagctgcggc ggatttgcgc gtcccacgcc ctgtccggct gcggacggag
    48421 gccgacgcgc ccgatcaggg tgtggtcgga ctgttcgaca gtatcggggc ggatgtcggc
    48481 ggtatgggtt tgtccggcgc gttcgtagtt cagggtgatt tttttgccgg ggctttggcg
    48541 ggtcaggttt gcccattcct gccatgaggc gatgggtttg ccgtcggcgg cagtcagcct
    48601 gtcgcccggt ttcaggcctg ctttttcggc ggggctgcct ttttccacgc cgccggcaac
    48661 ggttgtgatt ttaaagggca tcagtccgat gtagccttgg ttttttgcga ttttaccggc
    48721 ttccggcgtg cctgcggcat cgatggtgcg gacggtttgc gcgcccgatg ccgtctgaac
    48781 gccgacggcg actttgccgg cttcgaggtt gaggacgatt tcggtttgcg cgctgcccca
    48841 atctgcaacg ggtgtgccgt tgacggattg tattttgtcg ccgctttgga agccggcgcg
    48901 ggcggcaatg gtgtcaggtt cgactgtgcc gacgtagggg cgcagttcgg ttacgccgaa
    48961 ggaaaagctc agtccgtaca gcaaaaccgc cagtgcgagg ttggtcagcg ggccggcggc
    49021 gacgatggcg atgcgtttgg cggggtgttg tttgtcaaaa gcgtagggta aatcggcttc
    49081 tgatacttcg ccttcgcgcg tgtcgaccat tttgacgtaa ccgcccaacg gaatcggggc
    49141 gaggcaccat tcggtgtcgc cgcgctttcg ggtgaaaaac ggtttgccga agccgacgga
    49201 aaagcgtacg actttgacgc cgcacaatct ggcaacgatg tagtgtccga actcgtgcag
    49261 gctgaccaaa atcaggatgg cgaagataaa agctagaagg gtgtgcaaat ggttttcctt
    49321 tgataacggt gttcagacgg catcagcgca gtgtgccgat aaatgcccgc gcttgtgcgc
    49381 gtgtccgggc atcttgcgcc aagagccccc ctatgtcgcc tatgccgtct gaaaagtctt
    49441 gtgaaagaca atgggcgacg gttttggcaa tgtcggtaaa cttaatctgt ccgtccaaaa
    49501 aggcggcgac ggcggcttcg ttggcggcgt tcaatacgca gggcgcggct ccgcctgcgt
    49561 tcatggcttc ataggcgagc ttcaggcagg ggaagcggtc aaagtcgggc ttttggaagg
    49621 tcagcgcgga caatgcgtcg aaatcaaggt cgccgacacc cgaatcgatg cgctcgggca
    49681 agcccaaaca ataggcgatg ggcgttcgca tatcgggatt gcccagttgt gccaacacgg
    49741 agccgtcgcg gtagcgcacc atgctgtgta tcacggattg cggatggatg acgacttcga
    49801 gcttgtcagg cggacagttg aacagccaat gcgcttcaat cagctccaaa cctttgttca
    49861 tcatggtggc ggaatcgacg gagattttgc gccccatgct ccaattgggg tgtttgaccg
    49921 cttgggcggg cgtaatgctg tcgaacgtgt ttaaatcggc ggtcagaaac gggccgccgg
    49981 aagcggtcag gataatcgaa gcgatgccgt gttcgttcag acggccggcg taatcgcgcg
    50041 gcaaaacttg gaaaacggcg ttgtgttcgc tgtcgacggg cagcactgcc gcgccgtttg
    50101 cacgggcggt ttccataaac aacgcgccgg aaaccaccag cgtctctttg ttcgccagat
    50161 aaatggtttt gcctttttgc gccgctgcga gcgcggaagg cagccccact gccccgacga
    50221 tggcgcacat gacaccgctg acttcgtcgg cagacgcaac gtcaaccaat gcctgcgcgc
    50281 cgtgtaaaac ctgcgtcgcc gtgccgtcgc gtttcaacag ggcttcaagc cgagcggcgt
    50341 gttccgcatc ggcaacgacg gcatattcgg ggcggaacgt ttgacattga gccgccaatt
    50401 tctcgacctg cttatgccct gccagcgcga atacgcggaa tttttcgggg tggcgggaga
    50461 caacgtccag cgtgctttcg cctatgctgc cggtactgcc taatatggtc aggacttgtg
    50521 gtgtcataat gaggataact ttataccgga tgccgtctga agcgttttca gacggcatag
    50581 aatcaattta aaaccgacat catcgccgca tagacgctga taacggcaat caggctgtcg
    50641 gtacggtcga acacgccgcc gtgtcctggc agtagcttgc tgctgtcttt gatgcctgcc
    50701 gcgcgcttga gccagctttc caaaaggtcg ccgcatacgc tgacaacggt caacaccaaa
    50761 ccgattaaca cggtatcgaa ccagcctgta tcgaatgcca gccagccggc acttcgtacg
    50821 gcggtcatgt acacggccac gcaaaccgcg ccgccgattg cgccttccca gctcttgccg
    50881 gggctgattg ccggtgcgat tttgtgtttg ccgaacgcct tgccgctgaa atacgcgaaa
    50941 acatcggcaa tccacaccaa acccatgacg gcgagcagcg gcagggcatt atcgggatgc
    51001 gggcgcaggg atacgagcgc gaaccaaaac ggcatgatca gaagccagcc gacggcataa
    51061 acctgccaac cgccgttgag cctccattta aatctcaacc ataaaggcat gatggcgagc
    51121 caaaatgcca aaacaacata ccaaaccaaa ttaggcagca tccagccgcc cgcataggca
    51181 accacgccga aaaccaaggt tgcgacgagg taatggttgg ttttgatttt gcacaagccg
    51241 cccatacggg catattccca caaggcaatc agggcaatca gtccgcaaaa tgcagcccac
    51301 aaccattgcg gcgcgtaaaa cagcatgccc agcatcagcg gcagcagcca catagcggtt
    51361 attacccgtt gtttcagcat aatttagttc ctttgctgtt cgataggcag ttgctcggag
    51421 gtgcgtccga accgccgttc gcgtttttgg aacgaagcga cggcggcatc taaggcggtt
    51481 tcgtcgaaat caggccacag gatgtcggtg aaatacagtt ctgcatacgc catctgccag
    51541 agcaggaaat tgctgatgcg cgtttctccg ccggtgcgga tgaacaaatc cggttccggt
    51601 gcatcgccca gcatcaagtg tttcgccagc gtgtcttctg taatctcgga tacgccttcg
    51661 gcaatcagtt tgtttgccgc ctgcaaaata tcccagcggc cgccgtaatc ggcggcaatg
    51721 ctcagggtca ggccggtatt gtttgccgtc aacgcctccg cttcttcgat gccttgcaga
    51781 atctgccggt tgaagcgttc gcggctgccc agtattttca ggcgcatatt gttttcgtgc
    51841 agacggcgta cctgtttttg caaagcctgt aaaaacagcc ccatcaggaa cgaaacttcg
    51901 tcttcggggc ggcgccagtt ttcggttgaa aaggcaaaca cggtcagata ttgcacaccc
    51961 agtttggcgc aatgcttcac catattttcc aatgcgtcca aaccgcgttt gtgtcccatt
    52021 atgcgcggga ggaaacgttt tttcgcccaa cggccgttgc cgtccataat cacggcgata
    52081 tgcttgggaa tggcggtgtg ttccaaaacg gcctgcgtgc tgcttttcat gtctgccttt
    52141 cgcggttcgg cattcaaatg ccgtctgaac gccgaaccgt gcaggttaaa ttgccatcaa
    52201 atcttcttct ttggcagtca ggagtttgtc ggcttcggta atgtatttgt cggtcagttt
    52261 ttgaaccgct tcttcgccgc gacgtgcctc gtcttcggaa atttctttgt ctttgaggag
    52321 ttttttgatg tggtcgttgg catcgcggcg cacgttgcgg atagagacgc ggccttcttc
    52381 cgcttcgccg cgtacgactt taatcaggtc tttgcggcgt tcctcggtca gcatgggcat
    52441 cggcacgcgg atcaggtcgc cgacagctgc cgggttcagc cccaagtttg aatcgcggat
    52501 ggctttctcg actttggccg ccatattgcc ctcaaacggt ttcacgccga tggtgcgcgc
    52561 gtccagaagc gttacgttgg caacttggct gacggggacc atgctgcccc agtattcgac
    52621 ttccacttgg tcgagcaggc cggtatgcgc gcggccggta cgcactttcg ccagattttc
    52681 tttcagtact tcgaccgaac gctgcatttt gccttcggct gttttttgaa tatcgttgat
    52741 catattgttc tttcggtggg ataaggtggg cgggcagccg tctgaaacgc gcttcaaacc
    52801 tttcagacgg catgaaaact gttaactgcg aatagtaccg ttattcgggc atgacgacaa
    52861 ggcaggcgga ttggggatgc cgtctgaagc ggcaggcgtt tcagacggca tcgtgtccga
    52921 ccgtcagccg tgttcccgtg tttcaagcag gctttggcgc aggtgttggc gttcgtgggc
    52981 atccagccat ttgcggcggg tgcgttgcag caggatgacg agggcggaaa tttcctgacg
    53041 catattggtg ctgagccaga ggaagccctg ccattggtag tggaggtgtt cggcgagggc
    53101 ttccagttcg gggttgatgg cggtgtcgat gcggatgcgg cgggcgtgtc tgccgttgat
    53161 aagggcgacg gtttgttgca ggtcggtttg gagcagtgtg aagtggcggt cgagcagccg
    53221 gatttcgctg ccgttgagtt tgggagattg cagcttggcg gcagtggtca ggagcagctc
    53281 ggtggtgttg acaattttac ggtgggcgtg ctgcatggct tccatcatgg cggggctgat
    53341 gcggctttcg cccgatgtgg cggcgaggtg gctgcggctt ttgaccatgc gtgcgttgat
    53401 ttggcgcatt ttaaccatat tctgctccaa acgttcgcgc gtcatacgcc tgccgttgct
    53461 gatttcggca atcattttgc tgcagtcggt caggttgtcg gcaagcatga aacgccacat
    53521 cagtgtggat ttcagcggca gcagtttggc ggcggcaatg gcgatggccg cgccgatgag
    53581 gacgttcatg gcgcgcatca ggccgctgtc gaaccattcg ctgccgttgt cgccgatgag
    53641 catgcacatc gtcagccccg ccagcatagg gacgtagccg tttttgccga ccgccgccca
    53701 gccggccagt gcgcttgccg tgccgacggt gaggtagaag aggaggttgc cgtggaaata
    53761 atgctggttc agccataaaa cgcccaaacc cgcgcccagc ccgatgaccg tgccgagcat
    53821 acgttccacc gccttggagt aaatcgcccc ttgaaactgg agcatgccga ggacgacgaa
    53881 gacggtcatg cctatccatt cgccgtgttg gaggtggagc agccgggcga gtgcggtggc
    53941 gaacaggacg gccccgccga gccgcacggc gtgtatgagg cggcggtggc ggtagcgttc
    54001 gtaggagttg agccagcggc tgacgaggcg gttgcgttgc gaggtgttca tatcggttgc
    54061 cgtctgaagc ggaaatgtga aaaagcaca
//
LOCUS       DAXIFS010000002        39028 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.002, whole genome shotgun sequence.
ACCESSION   DAXIFS010000002 DAXIFS010000000
VERSION     DAXIFS010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 39028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39028
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.002"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..320)
                     /locus_tag="ACFOCA_000066"
     CDS             complement(<1..320)
                     /locus_tag="ACFOCA_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986849.1"
                     /translation="MLSQSQWLDAVKGRLRVRSDYALSKRWAVTPSEVSQYRRNRLRF
                     PFAVVLDIADVMDIDPIEIIAGLEYRRCREKDMERVKGAYFKAHCAHFVYPNNPGFFR
                     RKKR"
     gene            complement(402..719)
                     /locus_tag="ACFOCA_000067"
     CDS             complement(402..719)
                     /locus_tag="ACFOCA_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986850.1"
                     /translation="MKKALKWIAVFIAFSVWSFGIFLYGFNNGTEAGMQCAQIKGNGL
                     CAMSFDGSASKIEFSDLNEKNDKQTLCFQSLWEFNDECEKKESNSIYYIDLPENNPKD
                     IKQ"
     gene            complement(721..909)
                     /locus_tag="ACFOCA_000068"
     CDS             complement(721..909)
                     /locus_tag="ACFOCA_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986851.1"
                     /translation="MKALRIKEEQEESIRRLAINANKKLIQLGREPLRDSELAHILLN
                     EAIRCAKIDDDGKITIGN"
     gene            1366..2538
                     /locus_tag="ACFOCA_000069"
     CDS             1366..2538
                     /locus_tag="ACFOCA_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6986852.1"
                     /translation="MEFSRDTNSCIQPQEYERYEKVVMDAKGNLKVVPLRRGKGDSAF
                     IDTISFTFHESSVAKFFLITREFFPIKGVSDRDVLVRFSDILEWIFGFGISSHQPVGK
                     GRFYESRWQMERDGVLYGQVYIGGQQETILVEMTGKGCAVAEEGWEERLYRFLTADTT
                     YNAKITRCDVAKDFYENEISPDTAWEMYEQGKFDKRGKRPLVGKLGDDWLNPTEKGKT
                     LTIGSKHSSVFCRIYDKAKEQGDTSGVFWCRFEQQYMGRNCYLSLDILLSPGSFWGGA
                     FEICASLQQKGVTEHRCVSAKKRLELSIERSKQVASQQVGRAINMMVFMGMSDYEIVD
                     YLRRKDGAMPHRLNPASFMIKEKRACEYIHDYEKEIEIIKFDEYGMVLDSLGDLND"
     gene            2531..2815
                     /locus_tag="ACFOCA_000070"
     CDS             2531..2815
                     /locus_tag="ACFOCA_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986853.1"
                     /translation="MIRVREKQYPCLVLDDYFQSGLITRRMYFSLDKFHHIPVSGAVI
                     YKDDPIYFRRLEKVLKANAKELDCYAYRVLADGRLFLVDRLITDFFDERK"
     gene            2819..3121
                     /locus_tag="ACFOCA_000071"
     CDS             2819..3121
                     /locus_tag="ACFOCA_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986854.1"
                     /translation="MKMIARVTGMKRSKGITEKGQSYDSTKLFIEIQFPESQDMCGYA
                     SQEFAYGTYENYEKLLASGVKMPFKAEIDFDFVTNGKAVKQIVTNVVPVFEKPKNS"
     gene            3293..3520
                     /locus_tag="ACFOCA_000072"
     CDS             3293..3520
                     /locus_tag="ACFOCA_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6986855.1"
                     /translation="MFKSIKTNVRKAGAVLALATLSAPTWADGIEGVANGIVTEINKV
                     VPVVSSVGVALLSVYVLVKAFRLVSGFVAGR"
     gene            3530..3832
                     /locus_tag="ACFOCA_000073"
     CDS             3530..3832
                     /locus_tag="ACFOCA_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986856.1"
                     /translation="MMGYRVGMQCFSKKEQAEDYSVSKIVPVISPDGKLYAPYKSGGN
                     WYFEGYRIDLSFPQCSQESQFAQGAMLASSFLILFVIVWAFKTVGNMIKGSFANDG"
     gene            3901..4185
                     /locus_tag="ACFOCA_000074"
     CDS             3901..4185
                     /locus_tag="ACFOCA_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020424404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986857.1"
                     /translation="MKFKRMAVAFVMSAFFVPAFSEDIEIHRVEEGFKKLNMTGKLYE
                     SVSNAPFGTVFPMRSRDGEIQYTMHKLGCFFNTCYFNVNKVPDNLKKKKT"
     gene            4182..5171
                     /locus_tag="ACFOCA_000075"
     CDS             4182..5171
                     /locus_tag="ACFOCA_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor TspB C-terminal domain-related
                     protein"
                     /protein_id="HFC6986858.1"
                     /translation="MTVFDISDLNLKDPDQQDADDLGMTLADYKKMIQEDNDYGRIWQ
                     KIQLKKAEQLQKEKEEAVKRKRKRKIFSDYRGHRFKSVKELCYDVYKGLTYGRGWNGS
                     YQHIEVKGVDSGLYENNAELGRCNAVWPDGKVAHTLDYSVLYEDIPEGEKPEEEKKEP
                     EKDHPKPVEKPDSSNPKPSENPNVGTLGGGASPAVGNAPGGGSLGASDGGGSTGAGNG
                     GNNGSTAQGSGKGKGDGEDSEKMPDVPKYGEPDWGSLKSDGRFGSYATATAFSTGGHC
                     INDIRLDMGQFGSHTLQMGFLCDVLKKLRYVFIAMAYLYSAILVFKTVNSLKG"
     gene            5174..5464
                     /locus_tag="ACFOCA_000076"
     CDS             5174..5464
                     /locus_tag="ACFOCA_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HFC6986859.1"
                     /translation="MPRLIVALFMALVPMLKDLFFKILAGLGASFVSYEALSLSTDAI
                     LKYFQNAYGNIPPDILNMFALAGIPEALNIIFGGFSFSFGIWSSYRVLKFLK"
     gene            5475..6578
                     /locus_tag="ACFOCA_000077"
     CDS             5475..6578
                     /locus_tag="ACFOCA_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zonular occludens toxin domain-containing
                     protein"
                     /protein_id="HFC6986860.1"
                     /translation="MITLITGVPGSGKTLSVVSDLAKKINNEWKDRKIFIEGIPELTI
                     ETTPIPEGHSINDMHVWLQYPENNGSVVIIDEAQNVFPPRSPAVKAPPLVEWLHVHRH
                     SGIDIILITQMPQRIDKHVRDLVGAHYHIHKTPLGIFMRYFWDYCANNPRSEFANARP
                     EVYKLDKKAFGLYKSAEIHTKVKTPKSRVLYIIPIALVLFALFFYLGYKLLLGLGNKD
                     GTEEGEAKTQTIVSEEQLEQVRGMAYKASGEAGRNIGNQLGSDKENQNLTKEMLEPTI
                     DGHPESKPIYNGVRQVRQMEFPVACVKSSNSCNCYSGQATILKEIDKKTCIDYVDNGM
                     PFNPYKEEQREIKIDTDEQKPLKKQVLVMDAAK"
     gene            complement(7059..7475)
                     /locus_tag="ACFOCA_000078"
     CDS             complement(7059..7475)
                     /locus_tag="ACFOCA_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986861.1"
                     /translation="MTEEMMKKQRHILCVGCLYIILKVNVFPNTGWMEASKGMQGMSF
                     STFGYADAPGYTFSRIGHTLIFLLGKTTGTRTTVSDSSHNDKLRLFLRILQVLAKVSV
                     ATRMSYFFRRISVRYHSVSGFPVLKNSSEKRKRGYS"
     gene            complement(7508..8023)
                     /locus_tag="ACFOCA_000079"
     CDS             complement(7508..8023)
                     /locus_tag="ACFOCA_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986862.1"
                     /translation="MKSKLPLILINFSLISSPLGANAAKIYTCTINGETVYTTKPSKS
                     CHSTDLPPIGNYSSERYIPPQTPEPVSSPSNGGQVVKYKAPVKTVSKPAKSNTPPPQQ
                     APSNNSRRSILETELSNERKALVEAQKMLSQARLAKGGNINHQEINALQSNVLDRQQN
                     IQALQRELGRM"
     gene            complement(8089..8502)
                     /locus_tag="ACFOCA_000080"
     CDS             complement(8089..8502)
                     /locus_tag="ACFOCA_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HFC6986863.1"
                     /translation="MPSDKEARAGCLSLPANNGIIRALSPPFTGINIRLFAALGLLSL
                     SGAAAQASVYHCNSNGKSVYTSAPAGSCADADLPKISSHQGGGYRLKIKKLSQEAKIH
                     IESKKKNKKPAGKKNRQAAKAPKENQKQPTEKKSP"
     gene            complement(8489..10411)
                     /locus_tag="ACFOCA_000081"
     CDS             complement(8489..10411)
                     /locus_tag="ACFOCA_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6986864.1"
                     /translation="MIEIKNLTLQRGLKVLLDKANATVNPGQRVGLIGKNGTGKSSLF
                     ALIKGKITQDGGDVSIPKNWRLASVSQETPDLDISALDYVLQGDAELQAFQTALRQAE
                     AQNDGMKQAEYHAKLEEIDAYTAPARAAKLLNGLGFSQEEHSRPVKSFSGGWRMRLNL
                     AQALICRADLLLLDEPTNHLDLETVLWLENHLASLPCTQIIISHDRDFLNAATTQTIE
                     LSQQKLTQYGGNYDFYQNERAQRLAQQQAAYVKQQAQIKHLQSFIDRFKAKATKAVQA
                     QSRMKALAKLERVAPAHLDSEFSFEFYHPDHLPNPLLKLEHADLGYEGKTVLHDITLS
                     LESGARYGLLGVNGSGKSTFIKALAGKIDLLSGSIVRSEKLNIGYFAQHQLDTIRADQ
                     NPVWHIQQLSPKVREQEIRNFLGGFNFVGDMALQKTEPFSGGEKARLALAMIIWQKPN
                     LLLLDEPTNHLDLDMRHALTLALQSFQGALIIVSHDRSLLEATTDSFLLIDKGRLKNF
                     DGDLNDYRQWRLAQENAAAAPAASAQSQSRKDTKRIEAQIRQEKARRGKPIQQKIDRA
                     EKEMAQLSEIQTACEAFLAQEDAYLEANKEKLQNTLSQLAKVKTQLAQIEEVWLACQE
                     ELERIETEIEKQFAER"
     gene            complement(10488..10859)
                     /locus_tag="ACFOCA_000082"
     CDS             complement(10488..10859)
                     /locus_tag="ACFOCA_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH938/NDUFAF3 family protein"
                     /protein_id="HFC6986865.1"
                     /translation="MLFEENPIDEHFAEYDRRTGEIRLSGRHFNKPVLLHRDSAGLSK
                     WQSLSELTPDNLLSDVKADDYPEILIIGTGAAQEFIHPKIMADFSRIGIGVECMNTDS
                     AFRTLVFLHSEGRRAWAWLQP"
     gene            11057..12364
                     /locus_tag="ACFOCA_000083"
     CDS             11057..12364
                     /locus_tag="ACFOCA_000083"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFC6986866.1"
                     /translation="MKPVNIGLLGLGTVGGGTAAVLRDNAEEISRRLGREVRISAVCD
                     LSEEKARQICPSAAFVKDPFELVARKDVDVVVELFGGTGIAKDAVLKAIENGKHIVTA
                     NKKLLAEYGNEIFPLAEEKNVMVQFEAAVAGGIPIIKALREGLAANRIKSIAGIINGT
                     SNFILSEMREKGSAFADVLKEAQALGYAEADPTFDIEGHDAGHKITIMSALAFGTPMN
                     FSACYLEGISKLDSRDIKYAEELGYRIKLLGITRKTGKGIELRVHPTLIPESRLLANV
                     NGVMNAVRVNADMVGETLYYGAGAGALPTASAVVADIIDIARLVEADTAHRVPHLAFQ
                     PAQVQAQTILPMDEITSSYYLRVQAKDEPGTLGQIAALLAQENVSIEALIQKGVIDQT
                     TAEIVILTHSTVEKHIKSAIAAIEALDCVEKPITMIRMESLHD"
     gene            12357..12791
                     /locus_tag="ACFOCA_000084"
     CDS             12357..12791
                     /locus_tag="ACFOCA_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986867.1"
                     /translation="MTEPKHEMPTEEQVAARKKAKAKIRTIRIWAWVILALLASTALL
                     SQCAMSKPQAKQKIVESCVKNIPFAEKWQNDLRARGLDSNNTRLTVDYCKCMWEQPLD
                     RLSEKQIRSFGKLGAQEQLDLLGGANAFEARDKQCVADLKSE"
     gene            complement(12850..13119)
                     /locus_tag="ACFOCA_000085"
     CDS             complement(12850..13119)
                     /locus_tag="ACFOCA_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFC6986868.1"
                     /translation="MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTL
                     VGFGTFYVGERAERQGRNPKTGEPLTIAAAKTPKFRAGKALKDAL"
     gene            complement(13301..15751)
                     /gene="lon"
                     /locus_tag="ACFOCA_000086"
     CDS             complement(13301..15751)
                     /gene="lon"
                     /locus_tag="ACFOCA_000086"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFC6986869.1"
                     /translation="MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALE
                     NAITREEPVFLLAQTDAALEEPVAADLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGR
                     VLTIEDTGGLFVSHIEAVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSI
                     NGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAQLESELDIMQAEKRIR
                     GRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEAGIKKAGMSKEAEEKCLS
                     ELKKLKMMPPMSAESTVVRNYIDTLLELPWKKKSRVSKDIAKAGLVLDTDHYGLEKVK
                     ERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDES
                     EIRGHRRTYIGSMPGKILQNMAKAGVKNPLFLLDEIDKLGSDFRGDPASALLEVLDPE
                     QNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQY
                     LVPKQMKRNGVKEGELAIEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLDE
                     DSKTKKTGKAKPRAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVGGELL
                     TVEAAALPGKGVIQCTGQLGDVMKESVSAAWSVVRSRAESVGLAPDFYEKKDIHIHVP
                     EGATPKDGPSAGIAMTLAAVSAFTKIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAL
                     RGGIKHVLIPKDNLKDLEEIPENVKTGLTIHPVKWIDEVLALGLESQPEPWAEPSGAE
                     AAAESASKPKPRSRATKH"
     gene            16002..17105
                     /locus_tag="ACFOCA_000087"
     CDS             16002..17105
                     /locus_tag="ACFOCA_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6986870.1"
                     /translation="MSSFIFPDNGAEWRNESVQKPPKGWHYVRESGADGILKAAYQNI
                     ATVWQGDFHNAKQVLSAMKKRARKPAAVRSDADIAALFHAHRMKQAQQSRILNMLAVE
                     IRPGFVLDNKRAPDIRAALLDVYGEADGKPFFLPLNLLLGFMGAHEWHKKGVAVPQLG
                     GSIHVPFGVFSPLRGEYLDLLAHAPSTGFQTAFDIGTGSGVLAAILAKQGIPSVIGTD
                     TNPKAVACARANIARLGFEKQVEIRETDLFPEGFADLIVCNPPWLPAKPTSAVESALY
                     DPESAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLGLRPADFLEKAFIRAGLRVADMM
                     KTKPKHKKAANPSDPLAFARTRETTFLYRLKKA"
     gene            complement(17133..18878)
                     /gene="recD"
                     /locus_tag="ACFOCA_000088"
     CDS             complement(17133..18878)
                     /gene="recD"
                     /locus_tag="ACFOCA_000088"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HFC6986871.1"
                     /translation="MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQN
                     GHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAA
                     DTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQPFMVITGGPGTGKTTTVAKLLA
                     LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLL
                     KLRPPKMQAAFDPVYPLPFDVLVIDEASMLDTALMLQLLKAVKTGARVILLGDENQLP
                     SVGIGAVLSVLSQKTVLDGEAHQRLAGFLPEHGFSVSANPPVLAQNTAHLSFSHRFGD
                     NSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGN
                     IEAAYAGISDIVVLAAWRQDAEDFNKAYCSHVRRKMNIPEHLAYFAGEPIMIRQNDYA
                     LELFNGDIGLIMEDVGRQGSLAAYFADADGFKKVAVSCLPDFEPAFAMTVHKSQGSEY
                     REVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAAATVKTR
                     QTALGSMLERVFSQE"
     gene            complement(18946..19641)
                     /gene="lolD"
                     /locus_tag="ACFOCA_000089"
     CDS             complement(18946..19641)
                     /gene="lolD"
                     /locus_tag="ACFOCA_000089"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HFC6986872.1"
                     /translation="MSELILKCEGVGKRYRDGGLDVRVLHGLDLEIRAGESTGIIGSS
                     GSGKSTLLHILGGLDMPSEGRVLLMGEDLRTLSQRQLGILRNRHLGFVYQFHHLLPEF
                     SALENVMMPLLIGKKKREEAAETAMAMLEKVGLKHRSTHRAGELSGGERQRAAIARAL
                     VTQPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRFERVMVM
                     KDGSLHPKQGANA"
     gene            complement(19634..20881)
                     /locus_tag="ACFOCA_000090"
     CDS             complement(19634..20881)
                     /locus_tag="ACFOCA_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HFC6986873.1"
                     /translation="MFSLEAWIGLRYLRAKKRNGFMSFITMVSIAGIALGVTALIVVL
                     SVMNGFQKEIRGQLLNVAPHAEIGYIDNTDTDWRNLLRFTENRKGILAAAPYVSNQAL
                     LANAGEIRGVQMRGILPSEERKVVEYGDKMPAGKFEDLIPGEFDIILGVGLAEALGAE
                     VGNKVTVITPEGNVTPAGVVPRLKQFTVVGLVKTGVYEVDNSLAMTHIQDARVLYRLD
                     KEVAGLRLKLADPQNAPALTATLIPEAQRDTVWVRDWTFSNRSYFEAVELEKRMMFII
                     LTLIIAVAAFNLVSSLVMAVTEKQADIAILRTLGLSPGGVMKIFMVQGAFSGFFGTLA
                     GVVCGVLLGWNVGRVVAFFENLLGVHLINSQVYFIDYLPSDVDMGDVALIACISLGLS
                     FVATLYPSWRASKTQPAEALRYE"
     gene            21086..21364
                     /locus_tag="ACFOCA_000091"
     CDS             21086..21364
                     /locus_tag="ACFOCA_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986874.1"
                     /translation="MNIRTAFALCAIALSAAAAAYAKEIKIDANNTPYSEADAQKLAA
                     TAVGMGVKEPISLNGGSGSITVSGSSATQCVFKVGNGGALQIQGLNCK"
     gene            complement(21420..22037)
                     /gene="recR"
                     /locus_tag="ACFOCA_000092"
     CDS             complement(21420..22037)
                     /gene="recR"
                     /locus_tag="ACFOCA_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFC6986875.1"
                     /translation="MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEK
                     LVDALQTALKQVYHCAMCNTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEAANCH
                     DGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
                     FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA"
     gene            complement(22104..23642)
                     /locus_tag="ACFOCA_000093"
     CDS             complement(22104..23642)
                     /locus_tag="ACFOCA_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HFC6986876.1"
                     /translation="MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGD
                     EKISDHSINNAMQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV
                     DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQ
                     AEQLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVA
                     LNLKDFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFN
                     KAKEKLGDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDV
                     LKKKHNSEVLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAK
                     DVLTQLNGGKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLP
                     APVIVEVQAVTPPDDIAAQLPLAKQALAQQQSANTFDLLIRYFNGKIKQTKGAQSVDN
                     GDGQ"
     gene            complement(23697..24071)
                     /locus_tag="ACFOCA_000094"
     CDS             complement(23697..24071)
                     /locus_tag="ACFOCA_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HFC6986877.1"
                     /translation="MIILHGIPNCDTVKKAKNRLAGYGLEFEFRDFKKQRPSEAEICS
                     WLEQVPLATLLNKRGTSWRKLDAGTQQKVLSSTAEAVKLMSEMPSLIKRPVLECGGRV
                     YVGFSEETYDGIFNRQALCRQG"
     gene            24221..25849
                     /locus_tag="ACFOCA_000095"
     CDS             24221..25849
                     /locus_tag="ACFOCA_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HFC6986878.1"
                     /translation="MISTNGITMQFGAKPLFENVSVKFGEGNRYGLIGANGSGKSTFM
                     KILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAMTERDAI
                     YANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVGISEDLHNAKMAEVAPGF
                     KLRVLLAQALFSKPDVLLLDEPTNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEV
                     CTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQELQEFVARFSANK
                     SKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFE
                     TQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGSIKWAEK
                     ASVGYYPQDHENDFDVDMDLSEWMRQWGQDGDDEQVIRGTLGRLLFGSNDVVKKVKVL
                     SGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVSHDRQF
                     VSSLATQIIELDGKGGYEHYLGDYESYLEKKGVA"
     gene            25921..27174
                     /locus_tag="ACFOCA_000096"
     CDS             25921..27174
                     /locus_tag="ACFOCA_000096"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HFC6986879.1"
                     /translation="MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGK
                     DFPVFLHPETHEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDA
                     DGKIIDPFGGQRDLAAGILRHVSPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQM
                     VENGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRAD
                     YHPEIDSGIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVE
                     PVREVNQRLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQT
                     ALNVCIADTQGRLNREHTPYPQRAHWFALLEAANQADSGKIAAECRAQGKAHLIAEQI
                     DRARLAQIAPLQKTFRAAQDKTEKH"
     gene            27397..27705
                     /locus_tag="ACFOCA_000097"
     CDS             27397..27705
                     /locus_tag="ACFOCA_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986880.1"
                     /translation="MTLKTDLLPKINNEDYQRLILKHSAEFSGGEIRLLNEILEKFNF
                     DVVQAQALAQAVMQQIRFDPNAYHIDSDDEDTTGICPHCINPPMPPLRDYLVWRETRG
                     "
     gene            27787..28818
                     /gene="ruvB"
                     /locus_tag="ACFOCA_000098"
     CDS             27787..28818
                     /gene="ruvB"
                     /locus_tag="ACFOCA_000098"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFC6986881.1"
                     /translation="MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQD
                     KAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKELGVNLRQTSGPVLER
                     AGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
                     LPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIVSRSAQLLQLDMSEEGA
                     EEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDVMDRK
                     FLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATERAY
                     LHFGLPVEK"
     gene            complement(28841..29569)
                     /gene="rpe"
                     /locus_tag="ACFOCA_000099"
     CDS             complement(28841..29569)
                     /gene="rpe"
                     /locus_tag="ACFOCA_000099"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFC6986882.1"
                     /translation="MTAYRIAPSILSADFARLGEEVESVIAAGADLIHFDVMDNHYVP
                     NLTFGPMVCAALKPYASVPIDVHLMVEPVDDLIQSFAKAGASIITFHPEASRHIDRSL
                     SLIRDMGCQAGLVLNPATPVYLLENVLDRLDMVLLMSVNPGFGGQSFIPHTLEKIRRV
                     RAMLDRYEAQSGRHIAIEVDGGIKTDNIAAVARAGADTFVAGSAIFGKPDYKAVIDAM
                     RAELEKSGRLNLAPMIEIEMPSEN"
     gene            29715..30149
                     /locus_tag="ACFOCA_000100"
     CDS             29715..30149
                     /locus_tag="ACFOCA_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HFC6986883.1"
                     /translation="MPLPAPCRFAKPAASFLSMALLSCQLSHAATAYIPPNDFQPNCD
                     IRRLGLTQSQHNELRKIRTAFKMAGDRARLKVMHSEHSRRRSVVEIISSDVFNRNEAR
                     DYVESRYLSGMDFAVDELEIQHRFFHILTPQQQQMWLSSCLK"
     gene            complement(30162..31025)
                     /locus_tag="ACFOCA_000101"
                     /pseudo
     CDS             complement(30162..31025)
                     /locus_tag="ACFOCA_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714098.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(31033..31650)
                     /locus_tag="ACFOCA_000102"
     CDS             complement(31033..31650)
                     /locus_tag="ACFOCA_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFC6986884.1"
                     /translation="MFTGIVQGLGKLTAIHRPSEAFHTYVVELPQEAADNLQRGASVA
                     NNGCCLTITEIEGNRVSFDLMAETLAKTNLGLLKEGDCVNIERAARFGDEIGGHVMSG
                     HIMATVPIVEIERDGFNRTVWFSLPHELKPYILTKGFVGLDGCSLTIGKVEDGRFNVH
                     LIPETLERTLFGSRKVGDRINIEIDPNTQAIVDTVERLMAQRYAK"
     gene            complement(31813..32427)
                     /locus_tag="ACFOCA_000103"
     CDS             complement(31813..32427)
                     /locus_tag="ACFOCA_000103"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFC6986885.1"
                     /translation="MKTSNFSKRTSAMKTFALILADGQASRMGGEDKGLALLGGKALI
                     DHVIDRVRPQVSHIAISTNRNLEEYARRSPHIFPDARQWQHFGPLSALCTAANDLQLA
                     TADWLLVVPCDMPYLPGDLVARFETVSKRTPLCNAYYVETPITMHYNIMYIRPQILQS
                     AIPYLFSGMKTLRSWLQQQRARPVRFEFDGHFADLNTQIDLQEG"
     gene            32633..34405
                     /locus_tag="ACFOCA_000104"
     CDS             32633..34405
                     /locus_tag="ACFOCA_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite sensor histidine kinase"
                     /protein_id="HFC6986886.1"
                     /translation="MILPARFSDGISLSLRLKLLTGVWVGLAALSVVLTLLLSLRLEN
                     AASVIEEAGNLRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSD
                     TPLAYDLIQSMLIIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTW
                     WLRRFQWAIMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTPE
                     FKQVGRCFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQ
                     AAEHFLNRILPAVGADSGRVCLDGESDVYVSIHHADCGTAASDLGKYHEEIFPIEYQN
                     ETLGRLLLSFSDGISLTGDDRTLLQTLIRQLGVSLASAKQEEEKRLLAVLQERNLIAQ
                     GLHDSIAQALTFLNLQVQMLETAFAENKREEAAENISFIKTGVQECYEDVRELLLNFR
                     TKISNKEFPEAVADLFARFTQQTGITVETAWENGSFLPPQEAQLQMIFILQESLSNIR
                     KHARATHVKFTLSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIHAV
                     LEIRSQAQQGTTVSLTVASEESLK"
     gene            34402..35058
                     /locus_tag="ACFOCA_000105"
     CDS             34402..35058
                     /locus_tag="ACFOCA_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6986887.1"
                     /translation="MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMI
                     SRLQPDVVLLDLDMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGY
                     LLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRELEI
                     LGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNVPQPVLE
                     "
     gene            complement(35532..36566)
                     /gene="purM"
                     /locus_tag="ACFOCA_000106"
     CDS             complement(35532..36566)
                     /gene="purM"
                     /locus_tag="ACFOCA_000106"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFC6986888.1"
                     /translation="MSTSLSYRDAGVDIDAGDQLVENIKPFAKRTMRPEVLGDLGGFG
                     ALVEIGKKYKNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLF
                     FLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVG
                     VVEKENVITGRSIGVGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLRE
                     AVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPENTVAQIDAKSWELPK
                     LFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVQGLLGEQGETVYRLGLIRER
                     QGDEHQTQVA"
     gene            complement(37086..37170)
                     /locus_tag="ACFOCA_000107"
     tRNA            complement(37086..37170)
                     /locus_tag="ACFOCA_000107"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37134..37136),aa:Leu,seq:tag)
     gene            37324..38001
                     /locus_tag="ACFOCA_000108"
     CDS             37324..38001
                     /locus_tag="ACFOCA_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986889.1"
                     /translation="MPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMDMGTASIERSV
                     LWLEHEDWRLADYLEQNSGNEEGLKRLFMALDSVFSRCKGVRAAAVYALMPSENAAFR
                     LVCLSRQGEVLENLWDLDEAAGKVSLACRSAQSGWMNIASDVRRWLDLGELSGERNHA
                     SAAQISIPVCTESGGVLGVVHVEFECAECAGTAAQVEWVALALALSEPLKLLLGMSAG
                     KDGSEDV"
     gene            37994..38587
                     /gene="ribA"
                     /locus_tag="ACFOCA_000109"
     CDS             37994..38587
                     /gene="ribA"
                     /locus_tag="ACFOCA_000109"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFC6986890.1"
                     /translation="MSEMLNHVASCRLPTEWGVFTMHGFEEANGQEHVALTVGNFSDG
                     NPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLRQEGRGIGLINK
                     IRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLK
                     DAGINVVERIPLHVGENLENKRYLQTKADKLGHLMSE"
     gene            38743..>39028
                     /locus_tag="ACFOCA_000110"
     CDS             38743..>39028
                     /locus_tag="ACFOCA_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6986891.1"
                     /translation="MIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGC
                     GKICDEYAGKYPHIKVIHQENGGLSDARNAGIRAAKGDYLIFLDSDDYWAD"
BASE COUNT         9422 a        10022 c         9844 g         9740 t
ORIGIN      
        1 aaccgttttt tacggcggaa aaagcccgga ttgttcggat agacaaaatg cgcgcaatgg
       61 gctttgaaat acgccccttt gacgcgctcc atgtcctttt ccctgcaccg cctatattcc
      121 aaacctgcaa taatttcaat cggatctata tccatcacgt cggcaatatc caagacgacg
      181 gcaaaaggaa accgcaaccg gttgcgccga tattgggaca cctcggacgg cgtaaccgcc
      241 catcttttgg aaagcgcgta atcggaacgc acccgtaacc gccctttgac ggcatccagc
      301 cattgggatt gtgaaagcat aataaaatca aagcctttgc gaaaacctgt aatttaatga
      361 tacagatttt tgcaaaggct ctctatttga gcatatgctc cttattgttt tatgtctttg
      421 ggattgtttt cgggtaggtc tatataatat atagaattag attctttttt ttcgcattca
      481 tcgttaaatt cccataatga ttgaaagcaa agggtttgtt tatcattttt ctcattaagg
      541 tctgaaaatt cgatttttga agccgaacca tcaaaggaca ttgcacaaag tccattacct
      601 ttgatttggg cgcattgcat tcctgcttca gtcccgttat tgaatccgta cagaaatatg
      661 ccgaatgacc aaacggaaaa agcgataaag acggcaatcc atttcagggc ttttttcata
      721 tcagttacct atagtgattt ttccgtcgtc gtcgattttg gcgcatcgga ttgcctcgtt
      781 taaaagtatg tgtgcaagct cgctgtccct aagcggttcg cggccaagct gaatgagctt
      841 cttgttggca ttgatggcaa gccttctgat gctctcttct tgctcttctt tgattcgtag
      901 tgccttcatt ttttcaattt cctttcatat ttcaaattta aaacattaca agcagtgtta
      961 acaagtaatt tgtgattgac ttaacaagtt aactggttaa taattactca aaatgttaac
     1021 gcattaactc attaactcga atctgttgta aaagtgcaaa tgggtctaaa aatgaacaaa
     1081 cgacgagcag aaataatatt tgtaaacggc aaatggctgg ttaattgtta ttcatacgga
     1141 atttttgtaa cagaagccga atttgatacg ctttttttgg ctttgggttc tgcccgccaa
     1201 tatatcgaat cgggcgaaat tgtttctttg tccgtttgcg atgttttttt agctttgggc
     1261 agtcgagaat cacgccgctc gttcggcttg tgtaactgat gtttttatgc ccccccttat
     1321 ctaacagggg gggtcgaaaa tcgaagggcg acgggaatct aaaacatgga attttcaaga
     1381 gacacaaatt catgcattca acctcaagag tacgagcgtt atgaaaaggt tgttatggat
     1441 gcaaagggaa atttaaaggt tgttccctta aggcgtggca aaggcgattc cgcatttata
     1501 gacacaatca gctttacgtt tcatgaaagt tctgttgcaa agtttttttt aataacaagg
     1561 gaattttttc cgattaaagg cgtatcagat agggatgtat tagttcgttt ttcagacatt
     1621 cttgaatgga tattcggttt cggaatttcg tcgcatcaac ctgtcggcaa aggtcggttt
     1681 tatgagtcgc gctggcagat ggaaagagac ggagttttgt acggtcaggt ttacatcggt
     1741 ggacaacagg aaaccatact tgtagagatg acgggtaaag gttgtgcagt tgcggaggaa
     1801 ggctgggaag aacgtttgta taggttttta acggcggata cgacttataa cgcaaaaata
     1861 acccgttgcg acgttgcaaa agacttttac gaaaatgaaa tctcgcctga taccgcttgg
     1921 gaaatgtacg aacagggcaa gtttgataaa cgcgggaaac gtccgcttgt cggcaagctc
     1981 ggggatgact ggcttaaccc tactgaaaaa ggcaaaaccc ttaccatcgg ttctaaacat
     2041 tcttcggttt tttgccgtat ctatgacaaa gcaaaagaac agggagatac aagcggcgtt
     2101 ttttggtgcc gttttgaaca gcagtatatg ggcagaaact gttatttgag tttagatatt
     2161 ttgttatcgc cggggtcttt ttggggcggc gcgtttgaga tttgcgcttc attgcaacaa
     2221 aaaggcgtga cggagcatag gtgtgtaagt gccaaaaaaa gattggaatt gagcattgaa
     2281 cgctctaagc aggttgcatc gcaacaggtc gggcgcgcca taaatatgat ggtttttatg
     2341 ggtatgtctg attacgaaat cgttgattat ctgcgccgga aagatggtgc aatgccccat
     2401 cgtttaaatc ccgcatcatt catgattaaa gaaaaacgcg cttgcgaata tatccatgat
     2461 tatgaaaaag aaattgaaat tattaaattt gatgagtacg gaatggtttt agacagtttg
     2521 ggagatttaa atgattaggg taagagaaaa gcaatatcct tgtttggttt tagatgatta
     2581 ttttcaaagc ggcttaatta ctcggcgtat gtatttctct ttggacaaat tccatcatat
     2641 accagtatct ggagcggtta tttataagga tgaccctata tatttcagac gcttggaaaa
     2701 agttttaaaa gctaatgcta aagaacttga ttgttatgcg tatagggttt tagcagatgg
     2761 aaggttgttt ttagtagata ggttaataac cgattttttt gacgaaagga aatagcaaat
     2821 gaagatgatt gcacgtgtaa ccggtatgaa acgaagcaaa ggcattacgg aaaagggtca
     2881 atcttatgat tctacgaagc tctttattga gattcagttt cctgaaagcc aagatatgtg
     2941 cggatatgct agccaagagt tcgcatacgg cacatatgaa aactatgaaa aactgcttgc
     3001 ttcaggcgta aaaatgccgt tcaaggcaga aattgatttt gatttcgtca ccaacggcaa
     3061 agcagtaaaa cagattgtaa ctaacgttgt ccctgttttt gagaaaccta aaaactcatg
     3121 aaatatcacg taagtgcgtg gcttccggct gcttcaacag gcggatcgcc gataattcag
     3181 taatttcatt ttgacgatga atcggaagat tatgaagaac tctactccga tgttccattt
     3241 taaggctgtg cggtttgcct ccgaaaaccg taatttttaa aaaggaaatt ttatgtttaa
     3301 aagcatcaaa acaaatgttc gtaaagcggg tgcggtttta gcactggcta ccctttccgc
     3361 tccgacttgg gcggacggca tcgaaggcgt tgcaaacggc atcgtaaccg aaatcaataa
     3421 agttgttccg gtcgtttcaa gcgtcggcgt cgccctgctc tccgtttatg tgctggttaa
     3481 agcattccgc ctcgtctccg gctttgttgc tggtcgttaa aaaggtgtga tgatgggata
     3541 cagggtagga atgcagtgtt tttccaaaaa agaacaggca gaggattatt ctgtatccaa
     3601 aatcgtgccc gttatatctc ccgatgggaa actgtacgcg ccatataaat caggcggaaa
     3661 ttggtatttt gaaggctatc ggatagattt gtctttcccg caatgctccc aagaatcaca
     3721 gtttgcacaa ggggcaatgc ttgcctcttc gttcctgatt ttattcgtga tcgtatgggc
     3781 atttaaaacg gtaggaaaca tgattaaagg aagttttgca aatgatggtt gatttctatt
     3841 ttcttattgg attttttgca gtgatttcat tggtttattt tttcaaatag ggggtattag
     3901 atgaaattta aaagaatggc ggtcgctttt gtgatgtccg ctttttttgt tcctgctttt
     3961 tcggaagata ttgagattca tcgtgttgaa gaaggtttta aaaagttaaa tatgactggg
     4021 aaattgtatg aatctgtttc aaatgctcct tttggcactg ttttcccgat gagaagtagg
     4081 gacggcgaaa tacaatacac aatgcataag ttaggatgtt tttttaatac atgttatttt
     4141 aatgtgaata aagtacctga taatttaaaa aaaaagaaga catgacggtt tttgacatat
     4201 cagatttaaa tttaaaagac cctgaccaac aggatgccga tgatttgggt atgacgctgg
     4261 cggattataa gaagatgatt caggaggata acgattacgg caggatttgg cagaaaatcc
     4321 aattaaaaaa ggcagaacaa ttacaaaaag aaaaagagga agcggtaaag aggaagcgga
     4381 aaaggaagat tttttcagat tatagggggc atagattcaa gtctgtcaaa gaactctgtt
     4441 atgacgttta caagggtttg acttatggac gtgggtggaa cggcagttac cagcatatcg
     4501 aagtaaaagg cgttgattcc ggtttgtatg agaataatgc ggaattgggg agatgtaacg
     4561 ctgtttggcc agatggcaaa gttgcccata ctttagatta ttccgtcttg tatgaagata
     4621 tacccgaagg ggaaaagccc gaagaagaaa aaaaagaacc cgaaaaagac catccgaagc
     4681 ccgtagaaaa gcccgattcg tccaatccca agccgtctga aaacccgaac gttgggacac
     4741 tggggggcgg tgcttccccc gctgtcggaa atgcgccggg tggcggaagc ctcggagcat
     4801 ccgacggcgg aggaagcaca ggcgcgggga acggcggtaa taacggttca acggcacaag
     4861 gaagcggcaa aggcaaaggg gacggcgaag acagtgaaaa aatgcccgat gttcccaagt
     4921 atggcgagcc tgattgggga agccttaaaa gtgacggacg gtttggaagt tatgcaactg
     4981 caaccgcgtt ctcaacggga gggcattgca taaatgatat aaggttggat atgggacagt
     5041 tcggcagcca cacgcttcaa atgggctttc tgtgcgatgt attgaaaaag ctgagatatg
     5101 tttttatagc catggcttac ctctattccg caatcttggt ttttaaaacc gtaaacagtt
     5161 tgaaaggtta aaaatgccaa gattgattgt cgcattgttc atggcattgg tgccgatgct
     5221 taaagacttg ttttttaaaa ttctcgcagg tcttggcgcg tcgtttgtct catatgaggc
     5281 gttaagcctt tcaaccgatg ccattttgaa atattttcaa aacgcctatg ggaatatacc
     5341 gcccgatatt ttaaatatgt ttgcactggc aggcattccc gaagcattaa acatcatatt
     5401 cggcggtttc tcgttctcgt tcggcatatg gtcttcctac cgcgttttaa aattcctaaa
     5461 atgaaaggca aagaatgatt acattaatta caggcgttcc cggttcgggc aaaactttat
     5521 ccgtcgtttc ggacttggcg aaaaagataa ataatgagtg gaaagacagg aagattttta
     5581 ttgaaggcat tccggaatta acgatagaaa caacgcccat tcccgaaggt cattccatta
     5641 atgatatgca cgtttggctt caatatcccg aaaataacgg ctctgtcgtc atcatagacg
     5701 aagcgcaaaa tgttttcccg ccgcgctccc ctgccgtaaa agcaccgcct cttgtcgaat
     5761 ggttgcacgt tcacaggcat tcgggcatag atattatcct gataacgcag atgccccaac
     5821 gcatagataa gcacgtccgc gatttggtag gggcgcatta tcatatccat aaaaccccgc
     5881 tgggcatttt tatgcgttat ttttgggact attgtgcgaa taatccaagg tcagagttcg
     5941 ccaatgcacg ccccgaagtc tataagttgg ataaaaaggc gttcgggctt tataaatcag
     6001 cggaaatcca tactaaggta aaaaccccga aaagccgcgt tttatatatc atccccatcg
     6061 cattggtatt gttcgcccta ttcttttatt tgggctacaa gctattattg gggctgggta
     6121 ataaggacgg aacagaggaa ggagaagcta aaacgcaaac aatcgtttcg gaggaacaat
     6181 tagaacaagt caggggcatg gcgtataagg catcgggcga agccggaaga aatataggca
     6241 atcagttggg ctcggacaaa gaaaatcaga atttgacgaa agagatgtta gaacccacaa
     6301 tagacggtca tcccgaatca aaaccgattt ataacggggt caggcaggtc agacaaatgg
     6361 agttccccgt tgcctgtgtc aaatcgtcaa attcatgcaa ctgctattca gggcaggcaa
     6421 ccattttaaa agagatagac aaaaaaacct gtatcgatta cgtcgataac ggaatgccgt
     6481 tcaatccgta taaagaagaa caaagagaaa ttaagataga taccgacgaa cagaaacctt
     6541 taaaaaaaca agtattagtg atggatgcgg caaaatagaa aaccgccctt aatcgggcgg
     6601 ttatagtcgt gggttattga cttatcagta tgataacggc tagaataagc cgtatatcaa
     6661 tcgttatagt caaaagcagt ttaccaattc gcaaagtgat ctgcattttg atttatcctg
     6721 taaagtttaa aaactaggca ggaatgcaaa aatccccttg ttgtcagctt ggggattttt
     6781 gtttgtcccc accgctcttt taggtttctc gcctctcgcg cctgaatcta tgtcataaag
     6841 ttcctttcat tcaaaataaa aatctttcgg tttcagcccc cgccctctca ggatggcttg
     6901 agcggagtga agggggttaa ctgctagaat ggctgttttt tttaaagtgt ctcagtctgg
     6961 tatcgcttcg ttcgggggtt gtaggtgcag gaaaataggg cagaaaaaag gaaaaggggg
     7021 aagctttgta aagattgggc gcgctttttg cccaatcttt acgaataccc ccttttcctt
     7081 ttttctgaac tgtttttcaa taccggaaac ccactaacgg agtgataccg gactgagata
     7141 cgcctaaaaa aataagacat tcgggtcgca acagaaacct ttgccaaaac ctgtaatatt
     7201 cttagaaaaa gacgtaactt gtcattatgc gaactatcgg aaacagttgt acgtgtccct
     7261 gtggtctttc caagtaggaa aattaaagta tggccaatgc ggctgaatgt atagcccgga
     7321 gcatccgcgt atccgaaggt actgaacgac atgccctgca tccctttcga cgcttccatc
     7381 cagccggtat tgggaaatac gttgaccttc aatataatat acaggcagcc gacacacagg
     7441 atatgccgct gctttttcat catttcttct gtcaaatcct tggaacggtc gatttgaaaa
     7501 cacggcttta catacgcccc agttcccttt gcagggcttg aatattttgc tgcctgtcca
     7561 atacattgct ttgtaatgca tttatttctt gatggttgat gttgccgccc tttgccagac
     7621 gtgcttgtga taacattttt tgggcttcaa ccaatgcttt gcgttcgttg ctcaattctg
     7681 tttcgagaat ggagcgtctg ctgttgtttg agggtgcttg ttgcggcggc ggcgtattgg
     7741 attttgccgg cttggatact gttttgaccg gggctttata tttgacaacc tgtccgccgt
     7801 ttgacggtga tgataccggt tcgggcgttt ggggcgggat atagcgttcg ctgctgtagt
     7861 tgccgattgg gggcaaatcg gttgagtggc agcttttgga cggcttggtg gtgtaaacgg
     7921 tttctccgtt gattgtgcag gtgtagattt tggccgcatt cgcacccaat gggcttgaaa
     7981 tcagggaaaa gttgattagg attaagggga gttttgattt cataatgtgc ttgattttcg
     8041 gataatcatt tgattttttg gtatttttta taatgctttc ttggcgtttt acgggctttt
     8101 cttttcggtt ggttgctttt gattttcttt cggggctttg gcagcctgcc tgttcttttt
     8161 cccggcaggt tttttgtttt tctttttact ttctatgtgt attttggctt cttgactgag
     8221 ttttttaatt ttcaggcggt atccgcctcc ctgatggctg ctgattttag gtaaatccgc
     8281 atcggcgcac gatcctgctg gggctgatgt atatacgctt ttgccatttg agttgcaatg
     8341 gtatacggag gcttgcgccg ccgcgccgga aagggacagg agacccaagg cggcaaaaag
     8401 tctgatgttt ataccggtaa aaggcggtga taacgcccga attataccgt tattggcagg
     8461 caaagataag caccctgccc gcgcttcttt atcgctcggc aaactgtttc tcgatttcag
     8521 tttcaatccg ttccaattct tcttgacaag ccagccaaac ctcttcgatt tgggcaagtt
     8581 gtgttttgac ttttgccagc tgggataagg tattttgcaa tttttctttg tttgcttcaa
     8641 ggtaagcgtc ttcttgtgct aaaaatgctt cacatgccgt ctgaatttcg gaaagctgcg
     8701 ccatttcttt ttcggcacgg tctattttct gctgtatcgg cttgccgcgt cgggcttttt
     8761 cctgacggat ttgcgcttcg atgcgcttgg tgtctttgcg gctttggctt tgtgcggatg
     8821 ctgcgggtgc ggcggcggcg ttttcctgtg ccaaacgcca ttggcggtaa tcgttcaaat
     8881 cgccgtcgaa gttcttcaga cggcctttgt cgatcaggag gaagctgtcg gtagtcgctt
     8941 caagcaggct gcggtcgtgc gatacgatga ttaaggcgcc ttggaaactt tgcagagcga
     9001 gcgtcagggc gtggcgcata tccaagtcca gatggttggt tggttcgtca agcagcaaca
     9061 ggttcggctt ttgccagata atcatggcaa gggcaaggcg ggctttttct ccgccggaaa
     9121 aaggttcggt tttctgtaac gccatatcgc caacaaaatt gaagccgccg aggaaatttc
     9181 ggatttcttg ttcgcgtact ttgggagaaa gctgctgaat atgccaaaca gggttttggt
     9241 cggcgcggat ggtgtcgagt tggtgttggg caaaatagcc gatattgagt ttttcggaac
     9301 ggacgatgct gccggaaagc aaatcgattt tgcccgccaa ggctttgata aaggtagatt
     9361 taccgctgcc gttgacaccc aatagcccgt agcgtgcgcc gctttccagc gacagggtaa
     9421 tgtcatgcag aacggttttg ccttcgtaac ccaaatcagc gtgttctagc tttaacaaag
     9481 gattgggcag atggtcggga tggtaaaact caaaggaaaa ctcgctgtcc agatgcgcgg
     9541 gcgcaacgcg ttctagcttt gccaaagcct tcatgcggct ttgcgcttga acggctttgg
     9601 tggctttggc tttgaagcgg tcgataaagg attgcagatg tttgatttgc gcctgctgtt
     9661 tgacataggc agcttgttgt tgcgcgagac gctgcgcgcg ttcgttttgg taaaaatcgt
     9721 aattgccgcc gtattgcgtg agtttttgct gcgataattc aatggtttgg gtagttgccg
     9781 cgttgagaaa atcgcggtcg tgggaaatga tgatttgcgt gcagggtaaa gaggcaaggt
     9841 ggttttccag ccacaagacg gtttctaaat ccaagtggtt ggtcggttcg tcaagcaaga
     9901 gcaaatcggc gcggcaaatc agggcttgcg caagattcaa gcgcatacgc cagccgccgg
     9961 aaaaggattt gacggggcgg ctgtgttctt cttgcgaaaa acccagcccg ttcaacaatt
    10021 ttgccgcgcg ggccggcgcg gtataagcgt cgatttcttc caatttggca tgatattccg
    10081 cctgcttcat gccgtcattt tgcgcttccg cctgcctcaa tgccgtctga aaagcctgca
    10141 actcggcatc gccctgcaaa acgtaatcca aagcggaaat atccaaatcg ggcgtttctt
    10201 gggaaacgga agcgagccgc cagtttttcg gaatcgagac atcgccgccg tcctgagtga
    10261 ttttaccctt gattaaggca aacaggctcg atttgcccgt tccgtttttg ccgatcaaac
    10321 cgacgcgctg accgggattg acggtagcgt tggctttgtc gagcaggact ttcaaaccgc
    10381 gttgcagggt gaggtttttg atttcaatca taacggaaac atcgtcgggc gggaaaagcc
    10441 cgtattttac ctgaaagtca gtgccgatgc cgtctgaaac gggaaattta cggctgaagc
    10501 caagcccaag ccctgcgccc ttccgagtgc aggaaaacca atgtcctgaa tgccgaatcg
    10561 gtattcatac attccacgcc gattccgatt cgggaaaaat ccgccatgat tttgggatgg
    10621 ataaactcct gagccgcgcc cgtcccgata atcaatattt ccggatagtc atccgctttg
    10681 acatcagaca acagattatc cggagtcagt tctgacaatg actgccattt cgagaggccg
    10741 gcagaatccc tatgcagcag cacaggctta ttgaaatgtc tgccggacag ccggatttca
    10801 cccgtgcggc ggtcatactc tgcaaaatgt tcgtctatcg gattttcttc aaataacatt
    10861 tttttatcct gttgccgctt catctgtatc aggaggggtg caaaatcaga caaattcatg
    10921 taggattagc ggatttcatc tgacctctcc tgctgatttc agacggcatt tgattcaaag
    10981 tgcggcacaa ttatatcggc agcggatatt ttcgtctttc aatatttaca tttcagtcgg
    11041 cttacaagga gacacaatga agccagtaaa catcggtctt ttaggtttgg gtacggtcgg
    11101 cggcggtacg gctgccgtgt tgcgggacaa cgcggaggaa atttcccgcc gcttggggcg
    11161 cgaagtgcgc atcagtgccg tatgcgactt gagcgaagaa aaagcccgcc aaatctgccc
    11221 gtccgcagcc tttgtcaaag atccgttcga actggtcgcg cgtaaagacg tcgatgtcgt
    11281 cgtcgaattg ttcggcggca cgggcattgc caaagatgcg gtgttgaaag ccattgaaaa
    11341 cggcaaacac atcgttaccg ccaacaaaaa actgctcgcc gaatacggca acgaaatctt
    11401 cccgctggcg gaagaaaaaa atgtcatggt gcaatttgaa gcggcagtag cgggcggtat
    11461 cccaatcatc aaagccctgc gcgaaggttt ggcggcaaac aggattaaat ccatcgccgg
    11521 cattattaac ggcaccagca acttcatcct ctccgaaatg cgtgaaaaag gcagcgcgtt
    11581 tgccgatgta ctgaaagaag cgcaggcact gggctatgcc gaagccgacc cgaccttcga
    11641 catcgaagga catgacgcgg gccataaaat caccatcatg agcgcgctgg cattcggcac
    11701 gccgatgaac ttttccgcct gctacctcga aggcatcagc aaactcgaca gccgcgacat
    11761 caaatacgcc gaagaacttg gctaccgcat caaactgttg ggcatcaccc gcaaaaccgg
    11821 caaaggcatc gagctgcgcg tccaccctac cctgattccc gaaagccgcc tcttggcaaa
    11881 cgtcaacggc gtgatgaacg ccgtgcgcgt caacgccgat atggttggcg aaaccttata
    11941 ttacggcgcg ggcgcgggcg cattgccgac cgcttccgcc gtggttgccg atatcatcga
    12001 catcgcccgc ctggttgaag ccgataccgc ccaccgcgta ccgcatctgg cgttccaacc
    12061 cgcgcaagtc caagcgcaaa ccatcctgcc tatggacgaa attaccagca gctactacct
    12121 gcgcgtccaa gccaaagacg aaccgggcac gctggggcaa atcgccgcgc tgttggcaca
    12181 agaaaacgtg tccatcgaag cactgattca aaaaggcgtg attgatcaga ccactgccga
    12241 aatcgtgatt ctgacccaca gcacggtcga aaaacacatc aagtcggcaa tcgcagccat
    12301 cgaagcactg gattgcgtgg aaaaaccgat taccatgatc cgcatggaaa gcctgcatga
    12361 ctgagccgaa acacgaaatg ccgacggaag agcaggttgc cgcgcgcaaa aaagcaaaag
    12421 ccaaaatccg caccatccgc atttgggcat gggtcatttt ggcgttgctc gcttcaaccg
    12481 ccctgctctc ccaatgcgcg atgtccaaac cgcaggcaaa acagaaaatt gtcgagtctt
    12541 gcgtgaagaa tattccgttt gccgaaaaat ggcaaaacga tttacgggcc cgcggtttag
    12601 attcaaacaa tacccgcctt accgtcgact actgcaaatg tatgtgggag cagcctttgg
    12661 acagattgag cgagaaacag attagatcct tcggcaaact cggcgcacaa gaacagcttg
    12721 acctgctcgg cggcgcaaat gcctttgaag cacgtgacaa gcagtgtgtt gccgatttga
    12781 aatcagaata atgtggaccg ataaaaaagc cgattcttta aagaatcggc ttttttcata
    12841 aaaaacggct tacagtgcgt ctttcaaagc tttgccggcg cggaatttag gcgttttggc
    12901 ggcggcaatg gtcagaggct cgccggtttt ggggttgcgg ccttggcgtt ccgcacgttc
    12961 gcccacgtag aaagtaccga aaccgaccaa agtaacggtg tcgccttgtt tcagggcggt
    13021 ggttactgca ttggtagtgg catccaaagc tttttgtgcg gcggctttgg aaatgtcggc
    13081 ttcttgagca atcgcttcga tcaattcaga cttgttcaca atcagtccct tcctgtctta
    13141 aaaaatgatg aaatgcccga atactcgggg tttgtactgc ttgagcaact ttcgctttat
    13201 agcaattctg aaattgccgt gtcaagcaaa aaatacggaa tcaccctatt tgacaggctt
    13261 tcaggacgaa accgcatttt tacaacacat ttcctgcgtt tcaatgtttg gttgccctgc
    13321 tgcggggttt tggttttgaa gcggattccg ccgccgcttc cgcaccagaa ggttctgccc
    13381 aaggctcagg ctggctttcc aaacccagag ccaatacctc gtctatccat ttgaccggat
    13441 ggatggtcag gccggttttc acgttttcag ggatttcttc caagtctttg aggttgtctt
    13501 ttggaattaa aacgtgtttg atgccgccgc gaagcgcagc caacagtttt tccttcagac
    13561 cgccaatcgg caggacttcg ccgcgcaggg taatttcgcc cgtcatcgcc acatcggcgc
    13621 gtaccgggat tttggtaaag gcagataccg ccgccaaggt catcgcaata cccgcactag
    13681 ggccgtcttt cggcgtcgcg ccttcgggaa cgtggatgtg gatgtctttt ttctcgtaaa
    13741 aatcaggagc caaacccact gattccgcac gggagcggac aaccgaccac gctgcggaca
    13801 cggattcctt catcacatcg cccaactggc cggtgcactg aatcacgccc ttacccggca
    13861 atgctgcggc ttcgacggtc agcaattcgc cgccgacttc cgtccacgcc aaaccggtta
    13921 cttgtccgat acggttttcg ctttcggcaa cgccgtaatc gaagcggcgc acacccaaat
    13981 agtcgtgcag atttttctca tttactttaa ccgccctggg cttggctttt ccggtttttt
    14041 tggtttttga gtcttcgtcc aaggtaatct gcatcaccac cttgcggcag attttggcaa
    14101 tctcgcggtc gagcgaacgc acgcccgcct cgcgggtgta gtaacggata atatcgcgca
    14161 ccgcgctttc ttcgattgcc aattcccctt cttttacgcc gttgcgcttc atttgcttcg
    14221 gcacgaggta ctgcatcgcg atattgattt tttcgtcttc ggtatagccg gacagacgga
    14281 tgatttccat acggtcgagc agcggtgtcg ggatattcag gctgtttgaa gtcgcaataa
    14341 acatcacatc gctcaaatcg taatccactt cggcataatg atcggcgaac ttgttgtttt
    14401 gctcgggatc aagcacttcg agcaacgcgc tggcgggatc gccccggaag tcgctaccca
    14461 atttgtcgat ttcgtcgagc aggaacaatg ggttttttac gccggctttt gccatattct
    14521 gcaaaatctt accgggcatg gagccgatat aggtgcggcg gtgtccccgg atttcgcttt
    14581 cgtcgcgcac gccgcccaaa gccatgcgga catatttccg ccccgttgct ttggcgatgg
    14641 attcgcccaa agaggttttg cccacgcctg gagggccgac caggcacaga atcgggcctt
    14701 tgagtttgtc catacgtttt tggacggcga ggtattccaa aatccgttct ttgacttttt
    14761 ccaggccgta gtggtcggta tccagcacca atccggcttt ggcgatgtct ttgctgacgc
    14821 gggatttttt cttccacggc agttcgagca gggtgtcgat gtagttgcgt acgacggtgg
    14881 attcggcaga catcggcggc atcattttga gttttttcag ttcggacagg catttttctt
    14941 ccgcttcttt gctcatcccc gcctttttga tgcctgcttc caaggcatcc agttcgccgt
    15001 tttcgtcttc ttcgcccaat tctttgtgta tcgctttaat ctgttcgttc agataatatt
    15061 cgcgctggga tttttccatt tggcgtttga cgcgtccgcg tatgcgtttt tcggcctgca
    15121 taatgtcgag ttcggattcc agctgtgcca gcaggaattc catccgtttg ccgatttcgg
    15181 gaatttccaa aatctgttgg cgttgcgcca gtttcaactg caaatgcgct gcgaccgtat
    15241 cggttagccg gctgttttcg gcaatgccgt tgatgctgcc gataatttcg gcggggattt
    15301 ttttattgag tttggcgtat tgttcaaact gcgccaacag ggtgcggcgc acggcttcga
    15361 ggtcggtatt gccgcccgtg tcttcttcca cgaccgcctc tatatgggaa acgaacagac
    15421 cgcccgtgtc ttcgatggtc agaacacgtc cgcgatacag accttcgacc aatactttta
    15481 ccgtgccgtc cggcagtttc aatacctgta agacttgtgc gacggtaccg gtctgataca
    15541 ggtcggcggc aaccggttct tctagcgccg catcggtttg tgccaatagg aaaaccggtt
    15601 cctcgcgggt aatggcgttt tccagtgcgg cgatggattt cggcctgccg acaaacagcg
    15661 gcagaaccat atgcgggtaa acgacgacat cccgcaaagg aagggttgcc aaggcggcat
    15721 attcctcaaa atgcttttct ttttgtgtca taggtactct cttgtgtctg acagattgcc
    15781 gattttcgcg tacattgggg ttgaaggtat tatttcaagc atatgtggtt tatttatgga
    15841 gtttgatgcg atgccgtctg aaacattccg gcttcagact gcatgggctt ggaaagacaa
    15901 ggcgggaaca aaaaactgtt ctgtgttgcc gctccttgct gtaccatccg tatggtttac
    15961 ggttctgccg ccctattttc aaaacatgac gcaggtatcc catgtcttct tttatttttc
    16021 ccgataacgg ggccgaatgg cgcaacgaaa gtgtgcaaaa gccgcccaaa ggttggcatt
    16081 atgtccgcga aagcggtgca gacggcattt tgaaggctgc ctatcaaaat attgcaactg
    16141 tctggcaggg cgatttccac aatgccaaac aggtgctttc tgcaatgaag aagagggctc
    16201 gcaaacctgc cgccgtccgt tccgatgcgg atatcgccgc ccttttccat gcccaccgta
    16261 tgaagcaggc gcagcagagc cgtattctga atatgcttgc cgttgaaatc cgccccggtt
    16321 ttgtgttgga caacaaacgc gcgcccgata tacgcgccgc cctgctcgac gtgtacggag
    16381 aggcggacgg caaaccgttt ttcctgccgc tcaatctgct gctggggttt atgggtgcgc
    16441 acgagtggca taagaaaggg gttgccgttc cgcagctggg cggcagcata cacgttcctt
    16501 tcggcgtatt ctcgccgttg cgcggcgaat acctcgacct gctcgcccat gcgccgtcaa
    16561 cgggttttca gacggcattc gatatcggga cgggctcggg cgtgcttgcc gccattttgg
    16621 cgaaacaggg cattccttcc gtcatcggca cggataccaa tccgaaagcc gtcgcctgcg
    16681 cccgtgccaa tattgcccgt ttgggctttg aaaaacaggt tgagatacgg gaaaccgatc
    16741 tgtttcccga agggtttgcc gatctgattg tctgcaatcc accctggctt cccgccaagc
    16801 cgacttccgc cgtcgaatcc gcgttatacg accccgaatc tgcgatgctg gctgcgtttt
    16861 tgcgggatgc gccgaaacat ctgaatcccg acggagaaat ccgcctgatt atttccgacc
    16921 ttgcagagca tttggggctg cgccctgccg attttttgga aaaggcattt atccgggcgg
    16981 gtttgcgtgt tgccgatatg atgaaaacca agccgaagca caaaaaagcc gcgaatccga
    17041 gcgatccgct tgcttttgcg cgaacccggg aaaccacttt cctataccgt ttgaaaaagg
    17101 cataaggggc ggcggcgcgg cattcgggcg gattattctt gtgaaaatac ccgctcgagc
    17161 atactgccca atgccgtctg acgcgttttg acagtggcgg cagcttgccg gaaggtttct
    17221 tctccgccga agaatacgaa cttctccctc gcgcgggtaa tggcggtata taacagctcc
    17281 ttactcaatc cggacaatgc atcgtcccct tcgtccgaag gtgcggcgga aggcggcagc
    17341 agccagactt cccgatattc cgaaccttgg cttttgtgga cggtcatggc gaatgcgggt
    17401 tcgaaatcgg gcaggcagct taccgctacc tttttaaatc cgtccgcatc ggcaaaatag
    17461 gcggcaaggc tgccctgccg tccgacatct tccataatca gtccgatgtc gccgttgaac
    17521 agttcaagcg cgtagtcgtt ctgcctgatc ataatcggct ctccggcgaa ataggccaga
    17581 tgttccggta tgttcatttt gcggcgtaca tggctgcaat aggctttgtt gaagtcttcc
    17641 gcatcctgcc gccaagctgc caggaccacg atatccgaga tgcctgcgta tgcggcttcg
    17701 atattgccgt cttttaccgc ctgccaatag gctttgtgcg cccggtacaa cctttcgact
    17761 cgagcgttcg gactgcattc cgaatgttcc agttcatccg gaaaccggtc aaacaatgcc
    17821 cacgccccct catcgcccga tacggcggca cgggcaaggc agccgatgcc gctgttgtcg
    17881 ccgaaacggt ggctgaacga cagatgggcg gtgttttgcg ccaacacggg cggatttgcg
    17941 ctgacgctga aaccgtgttc cggaaggaag ccggccagcc tttggtgcgc ttctccgtcc
    18001 aaaacggttt tttgcgacaa aacggacagc accgccccga ttccgacgga cgggagctgg
    18061 ttttcatccc ccagcagaat cacgcgcgcg ccggttttga ccgcttttaa aagttgcagc
    18121 atcaatgccg tatccagcat agaggcttca tcgataacca atacgtcaaa cggcagcggg
    18181 taaacagggt cgaacgccgc ctgcattttg ggcgggcgca gcttcagcag tcggtggacg
    18241 gtttgccctt ccagtttgag caaatggcgg cggacggcct ccggcgcgtc aaaaccgttg
    18301 attgcacggt gcagcgcgcg cgccatatgt gccgccgctt tgcccgtcgg tgcggcaagc
    18361 gcgatgttgg gaagattttc gtcttcaccg caaatcagcg ccagcagttt ggcaaccgtc
    18421 gtcgttttac ccgtcccggg tccgccggta atcaccataa aaggctgcaa cagtgccaag
    18481 gcggcggcat cgcgctgccc ttcgctgccc gtgccttgaa accattttgc gaggttttgc
    18541 cgcgcgcctg ccgcgtcggg ggcggacgtg tcggctgccg ccaagcgttt tatctcggca
    18601 gccaaatcgt attccaactg ccacatcctg cccaaaaaca gccttctgcc ttccaaaatc
    18661 aaaggcgcgg cggatgttcc gaccacgggt gcgagtgccg acagcgcgtc agcctcgcca
    18721 ccgctcaaac ggataaacga atgaccgttt tgcaatgcct gaaacaggcg ttcggtgcag
    18781 tttgcaagca cttcgctgcc tgaacccgca tagcgtgcca aaaaccagat tgccgccctt
    18841 gccgccgctt gggcaaattc atctgtctgc cgttccattg tattccttgt cgaaatgccg
    18901 tctgaaggcg tggggcttca gacggcgcgg tgttgtttcg gctgtttagg cgtttgcgcc
    18961 ctgtttgggg tgcaggctgc cgtctttcat gaccatcacg cgctcgaagc ggccggcgag
    19021 ttcgtcgtcg tgcgttacga ccaccagccc cgttcccaat tccgttttca gttccagcat
    19081 catatccaaa acattcctgg cgttcgcacg gtcgaggttg ccggtcggtt cgtcggcaag
    19141 caggcatttt ggttgcgtaa ccaaggcgcg cgcaatggcg gcacgctggc gttcgccgcc
    19201 ggacagttcg cccgcgcggt gcgtcgaacg gtgtttcagt ccgacctttt ccagcatcgc
    19261 cattgccgtt tctgccgcct cttcccgttt tttcttgccg atcagaagcg gcatcatcac
    19321 gttttccagt gccgaaaatt caggcagaag atggtggaac tggtacacga aaccgagatg
    19381 gcggttgcgc aggatgccca gttgtcgctg gcttaatgta cgcaaatcct cgcccatcag
    19441 cagcaccctg ccttcagacg gcatatccag cccgcccaga atatgcagca gcgtcgattt
    19501 tccgctgccc gaagaaccga tgatgccggt gctttccccc gcgcggattt ccaaatccaa
    19561 gccgtgcagc acccgaacgt ccaaaccgcc gtcgcggtag cgtttgccca cgccttcgca
    19621 tttcaaaatc aactcactca taacgcaaag cctccgccgg ttgggttttt gaggcacgcc
    19681 agctcgggta gagcgtggca acgaaagaca gtcccaagga aatgcaggca atcagggcaa
    19741 cgtcgcccat atcgacatcg ctgggcaggt agtcgataaa ataaacctgc gaattgatga
    19801 ggtggacacc gagcaggttt tcaaaaaatg ccacgactct gccgacgttc caacccaaaa
    19861 gcacgccgca gaccacaccc gccagcgtgc cgaaaaagcc tgaaaacgcg ccctgcacca
    19921 taaaaatctt catcacgccg ccaggggaaa ggcccaaagt ccgtaaaatc gcaatgtccg
    19981 cctgcttttc cgtaaccgcc atcaccaagg aagagacaag gttgaacgcc gccacggcga
    20041 taatcagcgt caggatgatg aacatcatcc gtttttccaa ctcgaccgcc tcaaaatagc
    20101 ttcgattgct gaacgtccaa tcgcgcaccc aaaccgtatc cctttgcgcc tccggaatca
    20161 gtgttgccgt caaggcgggg gcgttttgcg ggtcggcgag tttcagccgc agccccgcaa
    20221 cttccttatc caagcggtac agtacgcgcg cgtcttggat atgcgtcatc gccaatgagt
    20281 tgtccacttc gtaaacgccc gtcttaacca gaccgaccac ggtaaactgc ttcaggcgcg
    20341 gcacgactcc ggcaggggta acgttgccct ccggcgtgat gacggtaact ttattgccga
    20401 cttccgcccc caaagcctcc gccaagccga caccgaggat aatgtcaaac tcgcccggaa
    20461 tcaggtcttc aaatttgcct gccggcattt tgtcgccata ttccaccact ttgcgttctt
    20521 cagacggcaa aatgccgcgc atctgcacgc ccctgatttc gcccgcgttt gccagcagag
    20581 cctgattgga aacatagggc gcggcagcca aaataccttt gcggttttcc gtaaaccgaa
    20641 gcaggttgcg ccaatccgta tccgtattgt cgatatagcc gatttcggcg tgcggcgcga
    20701 cattcaggag ctgcccgcgt atttctttct gaaagccgtt cataaccgac aagacgacaa
    20761 tcagcgcggt tacgcccaag gcgattccgg caatcgaaac catcgtgata aacgacataa
    20821 agccgttgcg ctttttcgcc ctgagatacc tcaagcctat ccaagcctct agagaaaaca
    20881 taacgctacc ttaaaaatgt ctgcaaacgt gccgccccgg acggcggttt gggggcggcg
    20941 gcaaaagttt attgtaccgt aaaacccagg cagcgtccga acgcccgagt gcgggggacg
    21001 gggcggcaga gcgggcggaa aacttgcaca acgcgtcaaa ctgccctatc ctttccttca
    21061 gaaaaaccgt ttcttgagga aaacaatgaa tatccgaact gcttttgctt tgtgcgccat
    21121 cgccttatcc gccgctgcgg ctgcctacgc caaagaaatc aaaatcgatg ccaacaacac
    21181 gccttattcc gaagccgacg cgcaaaagct ggcggcaacg gcagtcggta tgggtgttaa
    21241 ggaacctatc agcctgaacg gcggcagcgg cagcattacc gtgtccggca gcagcgcgac
    21301 gcagtgcgtg ttcaaagtcg gcaacggagg cgcgttgcag attcaagggc taaactgcaa
    21361 gtaaaccgcc cggaaaaatg ccgtctgaag ccttcagacg gcattttgca ttggcggcgt
    21421 tatgccccgc cttctttaat caggcggcgt tcgtacaccg cctgcgccag cgttcccgca
    21481 tcgacatatt ccaattcgcc gcccaaggga atgccctgcg acagcctgct gactttgtaa
    21541 ggcaggtttt taaaaaactc ggacaggaca tacgccgtcg cattgccttc tgcggtaaaa
    21601 gcggttgcaa taatgatttc ttcgacttcc ccgccgccca gccgttgcgc cagcctgtcc
    21661 aatgcgatgg cggatacgtc cattcccaat gccgtattga tttgccccat caggacgaaa
    21721 tacagcccgt cgtggcagtt tgccgcttcc atattcgaca cgtcggcagg catatgcacc
    21781 accatcagcc gccgcccgtc gcgtgtttca tcggcacaaa tatcgcacaa tccgccttcg
    21841 caaaacgtgt tgcacatcgc gcaatggtaa acctgcttca atgccgtctg caaggcatcc
    21901 accagttttt cagcctcttt gcgcttgtgt tggagcaaat gatacgctat ccgctgtgcc
    21961 gatttcggcc cgacgttggg taaaaccttc agcgcgtcga tcaatccttg gaaggcatct
    22021 tgttttttgt ggctcatcat attccgccgt atgggaaaac ggccggaata ttccgaccgt
    22081 tattttgtca acaaaagtgt caattactga ccgtcgccgt tgtcgaccga ttgcgctcct
    22141 ttggtctgtt tgattttgcc gttgaaataa cgtatcaaca agtcgaaagt attggcagac
    22201 tgctgttgcg ccaaagcctg ttttgcaagc ggaagctgtg cggcgatatc atccggcggg
    22261 gttacagcct gtacttcgac aatcacgggt gccggcagac cgatcagcct gacgtaggcg
    22321 ggtttgccgt ttgccggttt tgctttcagc agttccgcat aagcctcggg cggcatggac
    22381 tgccttgcct gctgtgcgcc caaaacggac acttccgacc atttcacgtc aacagccttg
    22441 ccgccgttca gttgggtaag cacgtctttt gccttgtttt cggcaagttt ggcggcttcg
    22501 gtacggatat aagcctgacg taccgcgtct ttggcttcgg caaacggcag ggttttctct
    22561 tcgcggactt ctttggcgcg gacgacccac gcggtttcgc tgttgatggt cagcacttct
    22621 gaattgtgtt ttttcttcaa tacgtcgtcg ctgaaaacgg cattgatcag gttttcgggc
    22681 ataccggaca tttgcgcatc ctgcctgctc agccaagttt cttgggtttc gactttcaaa
    22741 ccgctgtttt tggcggcttc ggcaagcgag gaaggatggt tgaacgcgtc atcgcccagc
    22801 ttttcttttg ccttattgaa gtcggcaacc gcctttttca ttttcaattc gttttctacg
    22861 gcggcttttt cctgctcgaa agaaggtttg gcttcatttg ccggcaaacg cgccacgcgc
    22921 tcttcaaacg catttttcac ttctgtttcg ctgacggtct gtttgtctgc aaagtctttc
    22981 agattcaagg cgacatattc caatttgacc gctttgggaa gcaggtagtc ttttttgttt
    23041 gcgttataaa acttctgcaa atcggcttca gacactttga cttgggcgat gaattcgtcg
    23101 gggttgaaag tgtgcgaacg gatggtgcgg ttgacctgcg tcagcctgat cagctgttcc
    23161 gcctgcgcgt cgccgaccaa tacgccgttt tggacgaggt ttaccaaatt ctgcaaggca
    23221 aactgatcgc ggatttcttc gacaaactgg tcttcagaca tatgacgttg ggaaaggtag
    23281 cggtttaaaa gcgcgtggtc gaatttgccg tttgcgtcgt ggaaattggg atcgtccacg
    23341 ataatctgct tgatttgttc ggaagaaacc gaaatgccca tcagcttcgc gccctgtttc
    23401 aggtaggcgc gttgcagcag ggattggaac accgcgtcgc gcgaagggct gccgccgtcc
    23461 gcctgttcat tttgcatagc gttgttgatg gagtggtcgc tgattttttc gtcgcccact
    23521 tggacgatgt agtcggcacc cggatgggat accgtgctga ccccgaagcc gacgaaggtt
    23581 aatgcaatca gccccaaaag gacttgggcg ggcgttctgt atttttcgat ggaatggaac
    23641 atattttcag attggaaatg ggattgggaa attcaagtcg ggtattgtaa cggtttttat
    23701 ccctgtctgc acagggcttg ccgattgaag atgccgtcgt aggtttcttc gctgaagccg
    23761 acataaaccc tgccgccgca ctccaatacg ggacgcttga tcaggctcgg catttcggac
    23821 atcagtttga cggcctccgc cgtcgaggac agcacttttt gctgtgttcc ggcatcaagt
    23881 ttgcgccagc tcgtcccgcg tttgttgagc agggttgcca aaggcacttg ttccagccac
    23941 gagcagattt ccgcttcaga cggcctctgt tttttaaaat cccgaaattc aaactccaag
    24001 ccgtatccgg caagcctgtt tttggctttt ttgactgtgt cgcaatttgg aatgccgtga
    24061 aggattatca tttggaaacc ttttgtctga aataataaaa cggatatttt actataagtg
    24121 tctgaaaatt tgcccgtctg tttcagacag cggggcggtt atgttacaat ccgaaaattc
    24181 gaaaaattta atctcttgtt caataaaggc tttaccaatc atgatttcta ccaacggcat
    24241 caccatgcag ttcggcgcga agccgctgtt tgaaaacgta tccgtaaaat tcggagaagg
    24301 caaccgttac ggcctgatcg gcgcgaacgg ttcaggcaaa tccaccttca tgaaaatcct
    24361 cggcggcgat ttggaacaga cggccggcga agtggcgatt gaaaacggcg tgcgtttggg
    24421 taaattgcgc caagaccagt ttgcctacga agacatgcgc gtgctggacg tggtgatgat
    24481 ggggcatacc gaaatgtggg cggcgatgac cgaacgtgat gcgatttacg ccaatcccga
    24541 agccaccgaa gacgactaca tgaaagccgc cgaactggaa gccaagttcg ccgaatacga
    24601 cggctacacc gccgaagcgc gtgccgccga actgttgagc ggcgtgggca tttccgaaga
    24661 tttgcacaat gcgaaaatgg cggaagtcgc cccgggcttc aaactgcgcg tattgctggc
    24721 gcaggcgctg ttctccaagc cggatgtatt gctcttggac gaaccgacca ataacttgga
    24781 cattaatacc atccgctggt tggaaggcgt gttgaaccaa tacgactcca cgatgattat
    24841 catcagccac gaccgccact ttttgaacga agtctgcaca cacatggcgg atttggacta
    24901 caacaccatc accatctatc cgggcaacta cgacgactac atgctcgctt ctgcccaatc
    24961 gcgtgagcgc gccctgaaag acaatgccaa ggcgaaagaa aaattgcagg aattgcaaga
    25021 atttgtggcg cggttcagtg ccaacaaatc caaagcccgt caggcaacca gtcgtctgaa
    25081 gcaggcagac aaaatcaaat cggaaatggt cgaagtcaaa ccctctaccc gtcaaaaccc
    25141 gtatatccgt tttgaagccg atgaaaaagc caagctgcac cgtcaggctg tggaagttga
    25201 aaaactggcg aaacgctttg aaacccagtt gtttaaaaac ctgaacttca tccttgaagc
    25261 gggacaacgc ctcgccatca tcggcccgaa cggcgcgggc aaatccaccc tgctgaaact
    25321 cttggccggc gcgtacaacc ccgaatattc agacggtctg ctgccggacg aaggcagcat
    25381 caaatgggcg gaaaaagcca gcgtcggcta ctatccgcaa gatcacgaaa acgacttcga
    25441 tgtcgatatg gatttgagcg aatggatgcg ccaatggggg caggacggcg acgacgaaca
    25501 agtcatccgc ggcactttgg ggcgtttgct cttcggcagt aacgatgtcg tgaaaaaagt
    25561 gaaggttctc tccggcggcg aaaaaggccg tatgctttac ggcaaactgt tgctgttgaa
    25621 acccaatgtc ttagtcatgg acgaaccgac caaccacatg gatatggaaa gcatcgaatc
    25681 cttgaacatg gcgctggaaa aatacaacgg cacgctgatt ttcgtctccc acgaccgtca
    25741 gttcgtttct tccctggcaa cccaaatcat cgaactggac ggcaaaggcg gatatgaaca
    25801 ctacttgggc gattacgaaa gttacttgga gaaaaaaggc gtagcataac cgccggttgg
    25861 aacaatgccg tctgaagccg cttcagacgg cattgttgat aactttaaaa taggaagcat
    25921 atgcagactt acctcgtcgg cggcgccgtc cgcgattatc ttttgggctt gcccgtcaaa
    25981 gaccgcgatt gggtggtcgt cggcgcagac gcacaaacca tgctggcgca aggcttccag
    26041 ccggtcggca aagattttcc cgtgtttctc catcccgaaa cgcacgaaga atacaccctc
    26101 gcccgcaccg agcgcaaaac cgccaaaggt tacgtcggtt tcagtttcca cgccgacaaa
    26161 gacgttacgc tggagcagga cttgatgcgc cgcgacctga ccatcaacgc gatggcgcaa
    26221 gatgcggacg gcaagattat cgaccctttc ggcggacaac gggatttggc ggcaggcatt
    26281 ttgcgccacg tttccccggc cttcgccgaa gaccccgtcc gcatcctgcg tactgcccgc
    26341 tttgccgcgc gttacaggtt tgaaatcgcc gaagaaacca taaagctgat gcggcagatg
    26401 gtggaaaacg gcgaagcgga cgcattggtt gccgaacgcg tctggcagga gtttgcgaaa
    26461 ggtttgatgg aaaaaaatcc gcgcaaaatg attgaagtgt tgcgcgaatg cggcgcgctc
    26521 aaagtcttgc tgcccgaagt caatgccctc ttcggcgtgc cgcaacgcgc cgactaccat
    26581 cccgaaatcg acagcggcat ccataccctg atgacgctgc aacgcgccgc cgatatgggt
    26641 ttgagcctgc ccgaacgcta tgccgccctg ctgcacgact tgggcaaagc caaaacaccg
    26701 tccgacatcc tgccgcgcca ccacggacac gacctcgccg gtgtcgaacc cgtgcgcgaa
    26761 gtcaatcagc ggctgcgtgc gccgaaacat tgcgccgagc ttgccgaatt ggtttgccgt
    26821 tggcacatta ttttccacca agtcggacag cttaaaagcc aaaccattct gaacgtattg
    26881 aaaaaaaccg atgccttccg ccgtcccgaa cgctttcaga cggcattgaa cgtctgcatt
    26941 gccgacacgc aaggccgtct gaaccgcgaa cacacgccct acccgcaacg cgcacactgg
    27001 ttcgccctgc tcgaagccgc caatcaggcg gattcgggca aaatcgccgc cgaatgccgc
    27061 gcgcagggaa aagcgcacct tatcgccgaa caaatcgacc gggcgcggct ggcacaaatc
    27121 gccccattgc aaaaaacgtt tcgagcggcg caagacaaaa cagaaaaaca ttaaaacgtc
    27181 caatgcagcc acttttatag tggattaaca aaaatcagga caaggcgacg aagccgcaga
    27241 cagtacagat agtacggcaa ggcgaggcaa cgctgtactg gtttttgtta atccactata
    27301 aagttttgag gacgataccc aatccaagct ttgcaacagc cgccgccata tccgctataa
    27361 ttcacgcttc agccatcctg cccccgacat aaaatcatga ccctgaaaac cgatttattg
    27421 cctaaaatca acaacgaaga ttatcaacgc ctcatcctca aacacagtgc ggaatttagc
    27481 ggtggcgaaa tccgcctgtt gaacgaaatc ctcgaaaaat tcaatttcga cgttgttcag
    27541 gcgcaggcat tggcgcaagc cgtcatgcag caaatccgct tcgaccccaa cgcctaccac
    27601 atcgacagcg acgacgaaga caccaccggc atctgccccc actgcatcaa cccgcctatg
    27661 ccgcccctgc gcgactatct cgtttggcgc gaaacccgcg gataaaacgc ttttgaccgt
    27721 tatcttttca atgccgtctg aaacgccgcc gaccgttcgg acggcatacc cgacaaaggg
    27781 aacactatgc tgcaaaccga caacctgacc gccgcgcaac cgcaacgcat cgttgccgcc
    27841 caaaccgcct ccgcacagga agaactgctc gaacgcgccc tccgccccaa aacgctggac
    27901 gactacatcg ggcaagacaa agccaaagaa cagcttgcca ttttcatcca agccgccaaa
    27961 aaacgcggcg aagcactcga ccacgttttg ctcttcggcc cgcccggact gggcaaaacc
    28021 acactggcgc acatcatcgc caaagaattg ggcgtaaatt tgcgccaaac cagcggcccc
    28081 gtcctcgaac gcgcaggcga cctcgccgcc cttttgacca accttgatcc gcacgatgta
    28141 ttgttcatcg acgaaatcca ccgcctcagc cctgttgtcg aagaaatcct ctatcccgcg
    28201 ctcgaagact accggctcga cattatgata ggcgaaggac ccgccgcccg ttccgtcaaa
    28261 atcgacctgc cgcccttcac gctcatcggc gcgaccaccc gcgccggtat gctgaccaat
    28321 ccgttgcgcg accgcttcgg catcgtctcc cgccttgagt tttacgaaaa ccgagacctt
    28381 accaccatcg tcagccgttc ggcacaactg ttgcagctcg atatgtccga agaaggcgcg
    28441 gaagaaatcg ccaaacgcag ccgcggtacg ccgcgcatcg ccaaccgcct gttgcgacgc
    28501 gtgcgcgatt tcgccgacgt gaaaaacaac ggcacaatcg acggcggcat cgccgatgcc
    28561 gctttaagta tgctggacgt ggacgcgcag gggctggacg tgatggacag gaaatttctc
    28621 gaagccgttt tgcacaaatt cggcggcggc ccggtcggtt tggacaatgt tgccgccgcc
    28681 atcggcgaat ctacagacac catcgaagac gttatcgaac cctaccttat ccaacaaggc
    28741 ttcctgcaac gcaccccgcg cggcaggatg gcgaccgaac gcgcctacct gcatttcggg
    28801 ctgcccgtcg aaaaataacg caatgccgtc tgaaacagag ctaattttca gacggcattt
    28861 ctatttcaat cattggcgca aggttcagcc tgccgctttt ttccagttcc gccctcatcg
    28921 catcaatcac cgccttatag tctggtttgc cgaaaatcgc agaaccggca acaaaggtat
    28981 ccgcaccagc tcgggcaacg gcggcaatat tgtcggtttt gatgccgccg tccacttcga
    29041 tggcgatgtg ccgcccgctt tgtgcttcgt accgatccag catcgcccgc acccggcgga
    29101 ttttttcaag ggtgtgcggg atgaagcttt gtccgccgaa tccggggttg accgacatca
    29161 gcaaaaccat atccagcctg tccaatacgt tttccaacag atatacgggc gttgccggat
    29221 tcaacaccag ccccgcctga cagcccatat cacgaatcag gctcaagctg cggtcgatat
    29281 ggcggctcgc ttcgggatga aaagtgataa tcgatgctcc tgctttggca aacgactgaa
    29341 tcaggtcgtc aacgggttcg accatcagat gcacatcgat cggcacgctt gcataaggct
    29401 tcaacgccgc gcaaaccata gggccgaagg tcaggttcgg cacataatgg ttgtccatca
    29461 cgtcaaaatg gatcagatct gcacctgccg caatgacgct ttccacctct tctccgaggc
    29521 gggcaaagtc tgccgacaaa atactgggtg cgatacggta ggcggtcata ttttttcctt
    29581 caatgccttt acgggcggac tcaacgcggg aaagccccga aacagcatta ttaacaaaag
    29641 ttaactgcca taataccatc tttcacacgg caatcaagta tattgtccga aatatctgga
    29701 ttaaaggaaa agccgtgcca ctgcctgctc cctgccgttt tgccaaacct gccgcctctt
    29761 ttttaagtat ggctttgctt tcctgtcagc tttcccacgc cgccacggct tatatccccc
    29821 cgaacgattt tcaaccgaac tgcgacatac gccgactcgg gctgacccaa agtcagcaca
    29881 atgagctgcg taaaatccgc accgccttca aaatggcggg cgacagggcg cgtttgaagg
    29941 ttatgcattc cgaacacagc cgccgccggt ctgtcgtcga aatcatttcc tcggatgttt
    30001 ttaatcggaa cgaggcgcgc gattatgtcg aaagccgcta tttgtccggt atggattttg
    30061 cggtggacga attggaaatc caacaccggt tcttccatat cctcacaccg caacagcagc
    30121 aaatgtggct ttcttcctgc ctcaaataat ccccgaaacg ctcacaacgc ccgttgtttc
    30181 ggcagcctgc ccgcccagtc gcaggcaaac tgccacgcgg aacgtcccga acggctgccc
    30241 cgcgtctgcg cccactgcaa tgccgccatc tgtgcggttt catcatacgg cacgccgaaa
    30301 tcttccagcc aattttgcac cgccgccaga taatcgtttt gatcgaacgg ataaaaactg
    30361 agccacaatc agaatcggtc ggacagggat attttttctt ccaccgcttc tttctgatgg
    30421 atttcccccc gcatccccgt cgtaccggca ttctcgtcaa aatattcggg catcaggtgc
    30481 cgtctgttgg aagtcgcgta aaccaaaacg ttggcgcaac gttgagacag accgccgtct
    30541 aacgcggttt tcaatgcctt ataggtttca tcgccgcttt caaacgacaa atcgtcgcaa
    30601 aatacgataa atttttccgg acgttccttc aaaagcgtca acaggtaagg caggccgatt
    30661 aaatcgcttt tatcgacttc gatcaggcgc aatcccttat ccgcatattc gtgtagcagg
    30721 gctttgacca gcgaggattt gcctgttccg cgcgcgccgc tcatcaatac attgttcgcg
    30781 ggtctgccga caatgaactg ttcggtatta cgcaccagca attcggtttg cctgccgact
    30841 cccgccagcc ttaccaaggg aaaggtgtgc ggatcgggca agtgttccaa aaaacctttt
    30901 ttgcccgcac tctgccagcg gaaggcaagc gcgttccaat ccgtatgccc gggttcgggc
    30961 ggaagcacgg catccaaacg ccgcaaaacg gcataggctt tatcgagaaa ttcgttcaat
    31021 tccatctctg cctcactttg catatctttg cgccatcagc cgttcgacgg tatcgacgat
    31081 tgcctgcgta ttcggatcga tttcgatgtt gatcctgtcg ccgacctttc tgctgccgaa
    31141 cagcgtccgt tccaaagttt cgggaatcag atggacattg aaacggccgt cttcgacttt
    31201 gcctatggtc aggctgcaac cgtccaagcc gacgaaccct ttggtcagga tatagggttt
    31261 gagttcatgc gggagcgaaa accaaaccgt gcggttgaac ccgtcccgtt cgatttcgac
    31321 aataggcacg gttgccataa tgtgtccgct catgacgtgt ccgccgattt cgtctccgaa
    31381 acgcgccgcc cgttcgatgt tgacgcaatc gccttccttc agcagcccca aattggtttt
    31441 tgccaaagtt tccgccatta aatcgaaact gacgcggttt ccttcgattt cggtaatcgt
    31501 caggcagcag ccgttattgg cgaccgatgc gccgcgttgc agattgtccg ccgcctcttg
    31561 cggaagctcg acgacataag tgtgaaatgc ctccgacggg cggtggattg ccgtcagttt
    31621 tcccaatcct tgaacaatgc ctgtaaacat aatcctgttt ccctgtgtcg gtaaaaatgg
    31681 tgcaaattgt agcatctccc cgcgaaaaat gccgtctgaa atgccttcag acagcattat
    31741 gcctccgatt cgggcaaaaa ccgcccggta tggcttgacc tttcctttcc acgccggtcg
    31801 gcggtcttgc ccttatccct cctgcaaatc gatttgcgtg ttcaagtcgg caaaatgccc
    31861 gtcaaactcg aatctgaccg gccgcgccct ttgctgctgc aaccagcttc ttaatgtttt
    31921 catacccgaa aacagatagg gaatcgcgct ttgcagaatc tgcgggcgga tatacataat
    31981 gttgtagtgc atcgttatcg gcgtttccac ataatacgca ttgcacaacg gtgtgcgttt
    32041 cgacacggtt tcaaacctcg ccaccaaatc gcccggcaga tacggcatat cgcacggcac
    32101 aaccaaaagc cagtcggcag tcgccaactg caaatcgttg gctgcggtac acaatgccga
    32161 aagcgggccg aaatgctgcc actgccgtgc gtccggaaaa atatgcggac ttcttcgagc
    32221 atattcttcc aaattccggt tggtgctgat ggcgatatgg ctgacctgcg gcctgaccct
    32281 gtcgatgaca tgatctatca gtgccttacc ccccaaaaga gcaagcccct tgtcctcgcc
    32341 tcccatacgg ctcgcctgac cgtcggccag tatcagggca aaagttttca ttgcggatgt
    32401 tctcttggaa aagttcgagg ttttcatgat tgcagtctgc cgttcccaat gactcaaaat
    32461 gccgtctgaa gcagacggca aataaattca tattatctga attttatcat aacatgattt
    32521 aacactgaag cggtacggat tatgttttcc ttaaccaatt ctttctgagc agttgtatct
    32581 aatcccaaag aatgatattg tttgcattat ttagaacaat ttttcgccga gcatgatact
    32641 gccagcccgt ttttcagacg gcatcagcct ttccctacgc ctgaaactcc tgaccggagt
    32701 gtgggtcggg ttggcggcat tgtctgtcgt tttgacactg ctgctctctt tgcgtctgga
    32761 aaacgcggcc tccgtcatcg aagaggcggg caacttgaga atgcaggcat accgtctggc
    32821 atacatggcg ggtgaaggat ctccccgctc ccaaatagac aatcaggttg acgaatttga
    32881 aaaaagcctg aatcgtattt cacaaagtga tgccatccat ccgctgattc cttcggacac
    32941 ccctcttgct tatgatttga tacaatccat gctgattata gattggcagg cacacatcct
    33001 ccccccgctc cagtcctacc ggcgaccgac tcaggtcgat ctctaccgct ttgccggaaa
    33061 catcgaactg tttttgcagg cattggaaaa tgccaacgaa aaaaacacat ggtggctcag
    33121 gcgttttcaa tgggcaatta tgttgatgac gctggtgtcg tctgtactga tgctgttttg
    33181 gcaccagatt tgggttatcc ggccgctgca ggcgttaagg gaaggtgcgg aacgcatcgg
    33241 acggaggtgt ttcgatattc cggttcccga aggcggtacg ccggaattca aacaggtcgg
    33301 gcgttgtttc aatcaaatgg gcggcaggtt gaaaatttta tatgatgatt tggaaggaca
    33361 agtcgccgag cagacacgca gtctcgaaaa acaaaatcaa aacctgaccc tgctgtacca
    33421 aactacacgg gacctgcacc aatcctacat accgcaacag gctgcagaac attttctaaa
    33481 ccgtatcctg cccgccgtag gagcagattc cggcagagtt tgtttggacg gcgaatccga
    33541 tgtttatgtt tccattcatc atgcggattg cggcacagca gcttcggatt tggggaagta
    33601 ccatgaggaa atcttcccca ttgagtacca gaacgaaaca ttgggcaggc tgttgctcag
    33661 cttttcagac ggcatttccc tcaccggaga cgaccgcacg ctgcttcaaa ccctgattcg
    33721 gcaattgggc gtatcgctcg ctagcgcgaa gcaggaagaa gaaaaacgcc tgcttgcagt
    33781 attgcaggaa cgcaacctga ttgcgcaagg attacatgac agcatcgcac aagcattaac
    33841 gttcctaaac ctacaggtac agatgctgga aaccgccttt gccgaaaaca aacgggagga
    33901 agccgcagaa aacatcagct tcatcaaaac aggcgtgcag gaatgttatg aagatgtccg
    33961 cgaactgctg ctcaacttcc gtaccaaaat cagcaataaa gaatttcccg aagccgttgc
    34021 cgacctattc gcccgcttta cgcaacaaac cgggataacg gtcgaaaccg cctgggaaaa
    34081 cggttcgttc ctgccgcctc aggaagcgca gctccaaatg atttttatcc tgcaggaaag
    34141 cctgtccaac atccgcaaac acgcccgcgc cacccatgta aaattcaccc tttccgaaca
    34201 cggcggacgc tttaccatga ccatccaaga caacggacaa ggtttcgaca cggagaaaat
    34261 aggagaaccc acgggcagcc atgtcggact gcacatcatg caggagcgtg ccaaacgcat
    34321 ccatgccgtt ttagaaatcc gttcccaagc tcaacaggga accaccgtct cattgacggt
    34381 tgcatctgaa gaaagcttga aatgactatt aaaattattc tgatagacga ccataccctc
    34441 ttccgcagcg gcattaaagc ccttttgtcg cgccaacacg gttttgaagt catcggcgaa
    34501 gccgcagacg gcctctcggg catcaaaatg attagtcggc tgcaacccga tgtcgtcctg
    34561 ctcgatttgg atatgcccgg catgaacgga cgcgaagcac tctcccaaat catcagcatc
    34621 aatccgcagc aggcagtgat tatgctgacc gtttccgaag acagcgacga cttgaccgaa
    34681 tgtattcgca tcggcgcgcg cggttacctg ctgaaaaaca tcaacgctga ctttctgctc
    34741 gaaagcatac gcaaagccgc cgaaggcgat aatgtattct cgcccgagat gaccgccaaa
    34801 ctcgttaaaa gcctgatttc cccccaacct gcccaaggga cacaggcact ctcctcactt
    34861 acccctcgcg aactggaaat cttgggctat ctcgccgcag gacacagcaa caaaatcatc
    34921 gcccgccacc tcgatcttgc cgaatccacc gtcaaagtcc acgttcaaaa cctgctccgc
    34981 aaactcaacc tcagcagccg ggtgcaggcc gctgtttacg ccatccggca caacgtcccc
    35041 caacccgtgc tggaataagg cgggttcaga cggcatatta ggggttttaa tccccgtacg
    35101 gtcattcgga taacagacca agcatgtaag tttatgcccc cataagtacg cttggcatag
    35161 cagtaatatt gttcggttta gtgttttccg tttgccccta tctgatactg caatatcagc
    35221 tatgccgtct gaaaacgtat catcatgata ttttcagacg gcataataaa aagcggaaat
    35281 actaatgcgg ggtaaaatgt tccattccga atcccataaa tatacaatgg cttatatcgt
    35341 ttaagcatgt gtaacccacc ctcatatcaa tcaatatata gtggattaac aaaaaccagt
    35401 acggcgttgc ctcgccttgc cgtactatct gtactgtctg cggcttcgtc gccttgtcct
    35461 gatttttgtt aatccactat aaaaatgccg tccaaaccca tgtttgagac ggcatttcgc
    35521 tatagaagca atcaggcaac ctgggtttga tgctcgtctc cctgacgctc acggatcaaa
    35581 cctaaacggt aaactgtttc accttgttca cccaagagac cctgaaccgc atcggcatct
    35641 tcggcagcaa caataacgac catgccgatg ccgcagttaa aggttcggta catttcttgg
    35701 gtttccacat tgcccgcctt ttgaagccat tggaagagct tgggcaattc ccacgattta
    35761 gcatcgattt gtgcaaccgt gttttcaggc aacacgcgcg gcacgttttc ggtaatgccg
    35821 ccgccggtaa tgtgtgccat acctttaatg gtaaattttt ccaaagcggc aagaatcggt
    35881 ttcacataca gacgggtcgg cgcaataaca gcctcccgca aggttttgcc attatcaaac
    35941 tcggcatcca gatcgggatt gtcgcgttcg atgattttac ggataaggga atagccgttt
    36001 gaatgtgcgc cgttggaagc caaacccaat accacatcgc ctacgccgat gctgcggccg
    36061 gtaatgacat tctctttttc caccacgccg acggcaaaac ccgccaaatc gtattctccg
    36121 acgggataca tacccggcat ttcggcagtt tccccgccaa tcagggcgca gccggattct
    36181 tcgcaacctt gtgcaatgcc tttgatgaca tcggttgcgc gcggaacatc caatttgccg
    36241 caggcgaaat aatccaagaa aaacagaggt tctgctcctt gaaccaaaat atcgttgaca
    36301 ctcattgcaa caaggtcgat gcccaccgta tcgtgtttat cccaatcaaa ggcaagtttg
    36361 agcttggtac ccacgccgtc cgtaccgctg accaatacgg gatttttata tttcttgccg
    36421 atttcgacca atgcgccaaa accgcccaaa tcccccaata cttccggacg catggtgcgt
    36481 ttggcaaacg gtttgatgtt ttcgaccagt tggtcgcctg cgtcgatatc gacacctgca
    36541 tcgcggtaac tcaatgaagt actcatcatt tttccttggt aaatggggat tggacggtaa
    36601 aataacgggg cgtattctac cttatttcgc gtttgcaggt tcagattttt agacaatatt
    36661 gtaaacaatc cgccatatgc ccgcgcgtgt cgggtttggc gggatcgtcc gcaggattaa
    36721 cgggcagaaa cccgcctgcc cttcccctca attccttata tatcgcgttc catcaaaaga
    36781 cgcattgctt ttcttaacca ttccttttgg cagacgggcg gaaggggttt tttgatgcca
    36841 tcatcaaaat caatattttc ttctttccag ttgaaacccc ggcattaggg gcggtgaatc
    36901 tgattgcggg cggaagcacc cgcttctgat tcggggtaga acaaatggcg gcactttatg
    36961 taccgttctg cgtgttgaaa catataggca gataaaaaag ccgcccgctg aaaagcagac
    37021 gacttatgtt ttgtggcact aatttgtccc gataagcatt aactatatga tttatttatc
    37081 attattggtg cggacggaga gactcgaact ctcacacctc tcggcgccag aacctaaatc
    37141 tggtgcgtct accaatttcg ccacgtccgc atgggaattg gacaattata cagattttgt
    37201 ttttttgtgc aaggttttcg gcggggctgt tgatggcttg gggtttgggg cggtaaaatc
    37261 tgtttttcgt ccgcctgaca tcggaatcgg gcggtttttt gtttttattg acggaatttg
    37321 ggtatgcctg ctgctttgat taaggatttt ctgctgactc agggtttgaa gctgccgctt
    37381 gacgaggttc gggcggcgta tctgacggcg cagacggtaa tggatatggg gacggcttcg
    37441 attgagcgtt cggttttgtg gcttgagcat gaggattgga ggcttgccga ttatttggag
    37501 caaaacagcg ggaatgagga aggtctgaaa cggcttttca tggctttgga ttcggtgttt
    37561 tcacgctgta aaggcgtgcg cgccgcagcc gtttatgccc tgatgccgtc tgaaaatgcc
    37621 gcctttcggc tggtttgcct gtcccggcag ggcgaggttt tggaaaacct gtgggatttg
    37681 gatgaagcgg caggcaaggt ttcgctggct tgccgttcgg cgcaaagcgg ctggatgaat
    37741 attgcctcgg atgtgcgtcg ttggttggat ttgggagagc tttcgggaga acgcaatcat
    37801 gcttcggcgg cgcaaatttc cattccggtc tgcacggaaa gtggcggtgt gttgggcgtg
    37861 gttcatgtgg aatttgaatg cgcagagtgt gcgggtacgg cagcacaggt ggaatgggtg
    37921 gctcttgcct tggctttgtc cgaacctttg aaactgctgt tgggtatgtc tgccggaaaa
    37981 gatgggagtg aagatgtctg aaatgttgaa ccatgtggca tcctgccgcc tgccgaccga
    38041 atggggcgta tttacgatgc acggctttga agaggcaaac gggcaggaac acgtcgcgct
    38101 gaccgtcggt aatttttcag acggcaatcc ggttctgacg cgcatccact ccgaatgcct
    38161 gacgggcgat gcgctgttct cgagaaaatg cgactgcgga cctcaacttg aagcggccat
    38221 gagggcggta cagacagagg ggcgcggcat catcgtctat ctgcgtcagg aaggacgcgg
    38281 catcgggctg attaacaaaa tccgcgccta tcatctgcaa gaccaaggta tggatacggt
    38341 tgaagccaat ttggcactcg ggctgcccgt cgatgcccgc gatttccgtt tggcgcaatc
    38401 tatctacgaa tatctgggca tccgctcggt caaactgctg accaacaacc ccgaaaaaat
    38461 ccaaaccctg aaagatgccg ggattaacgt ggtcgaacgc atccccctgc acgtcgggga
    38521 aaaccttgaa aacaaacgct acctccaaac caaagcagac aagctgggac atctgatgtc
    38581 ggaataaggc aaagttgcag ggaacgggca tcctgcgccg cctttcggga aacaggtttc
    38641 cataccttga taaagcaata agttttatag tggatgcaaa cgcattgcga gcgcgggttt
    38701 gaggcatacg cgcaaacatc ttaatataat ggattgatat ttatgatttt ctccatcatc
    38761 gtccctattt acaatgtgga aaaatacctc cgctgctgcg tggattccgt gcttgccgaa
    38821 aattttgccg attatgaaat gattttggtc gatgacggtt cgccggacgg ctgcgggaag
    38881 atttgcgacg aatatgcagg caaatatccg catataaaag tgattcatca agaaaacggc
    38941 gggctgtcgg atgcccgcaa cgccggtatc cgggcggcaa aaggcgatta cctaatcttt
    39001 ttggacagcg acgactattg ggccgata
//
LOCUS       DAXIFS010000003        35073 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.003, whole genome shotgun sequence.
ACCESSION   DAXIFS010000003 DAXIFS010000000
VERSION     DAXIFS010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 35073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35073
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.003"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..237
                     /locus_tag="ACFOCA_000111"
     CDS             <1..237
                     /locus_tag="ACFOCA_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009345136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986892.1"
                     /translation="LEQKRTALIQGGYVFWRKRWDSTKFYFIDLNIFISYENLIYHKN
                     SHIQKSWSNYCITLLEECRLKCFRTAFPKLPEKS"
     gene            266..397
                     /locus_tag="ACFOCA_000112"
     CDS             266..397
                     /locus_tag="ACFOCA_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986893.1"
                     /translation="MQNQNTRPVKIELKGEAGKRVLLAAARRIAKTHQKAVKALADK"
     gene            394..762
                     /locus_tag="ACFOCA_000113"
     CDS             394..762
                     /locus_tag="ACFOCA_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HFC6986894.1"
                     /translation="MIDGELVALIHQTVLADEAGLKGRADMACLDGALSRIANWRQYE
                     NLEDIYEIAALYAQAIAKAHAFPDGNKRTALLTMLTYLDLQGISIAADQGLDDLIVSL
                     AAGETDFKQLAETLRRLDKE"
     gene            1095..1691
                     /locus_tag="ACFOCA_000114"
     CDS             1095..1691
                     /locus_tag="ACFOCA_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6986895.1"
                     /translation="MSVIALTSLFVSVFTLFYIFRHSVQFNLWGAAEWLMFWQLTVVS
                     VTAVIALGTIFINKKTSKQKATLDVILNDYQDAQFVEADNHISPYIRGTAVDDNNARI
                     DLYEIYQNKGGQWEKERGHLLTVINRHEFYACAINSGVLDEDLFKRLHCTNFIKLWNA
                     VSPLVMKIREEERKDTIFRELEILVALWKANPLKASDL"
     gene            2050..2286
                     /locus_tag="ACFOCA_000115"
     CDS             2050..2286
                     /locus_tag="ACFOCA_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HFC6986896.1"
                     /translation="MLRVQKWGNSAAVRLPADMLKQLDFKIGDALVAEVHNGELRVRA
                     ARRFRLADLLAEMEETPPRVEGWEILDDVGNEVV"
     gene            2288..2635
                     /locus_tag="ACFOCA_000116"
     CDS             2288..2635
                     /locus_tag="ACFOCA_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6986897.1"
                     /translation="MYIPDKGDIFHLNFDPSSGKEIKGGRFALALSPKAFNRATGLVF
                     ACPISQGNAAAARSSGMISTLLGAGTETQGNVHCHQLKSLDWQIRKASFKETVPDYVL
                     DDVLARIGAVLFD"
     gene            complement(2688..3197)
                     /locus_tag="ACFOCA_000117"
     CDS             complement(2688..3197)
                     /locus_tag="ACFOCA_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986898.1"
                     /translation="MDILLKYWKPVGVLLLIVLIFTAWHFDRAEKYRMGREAAAAEIS
                     NRLKDGYIEQAKQARSAEQKAAAAFAERQTKLEEEKQNAEKTVAAMRLELNRLRHYAA
                     AQNRNRNLPATTTAATASDGASDSQGWLLFGQCAEKYAGLAETADGHAADLREWQAYG
                     HAVSSQRAE"
     gene            complement(3209..3682)
                     /locus_tag="ACFOCA_000118"
     CDS             complement(3209..3682)
                     /locus_tag="ACFOCA_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-Ala-D-Ala carboxypeptidase family
                     metallohydrolase"
                     /protein_id="HFC6986899.1"
                     /translation="MQVTKNFSLRELTRSETARRAGVPNEPSPADMDNIYYTAQQLEK
                     IREYVGRPIIVTSCFRSERVNKLVGGSPTSAHRHGLAADCDASGMTSPAFAKLLIKMR
                     DEGALKFDQLILEFPERGDGAWVHIGFRRNSPQRNQILTATKKNGKTVYLPGLHP"
     gene            complement(3821..4096)
                     /locus_tag="ACFOCA_000119"
     CDS             complement(3821..4096)
                     /locus_tag="ACFOCA_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986900.1"
                     /translation="MKLLLILSAAPSLISAYLMICRLNGRKWSALSPEAWAYLAFLGG
                     AIYTFYIVFAYGLTPSLGKFMMDIAACVYFGSRSVRVVKWRHRHGLK"
     gene            complement(4093..4518)
                     /locus_tag="ACFOCA_000120"
     CDS             complement(4093..4518)
                     /locus_tag="ACFOCA_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986901.1"
                     /translation="MSEPIITPAAVYIFGGVVGAGYLLGMPVDAVVLGAVASAAVTMI
                     SEPKSRWMVVAYIVIGGLLGGAFAPPLTHFLIGEVVGSHPSLGEQRIQFAHAFAPVVV
                     GLLWQVLLRFARAVWPSFEKHADDIVEWLLNLLPWRPKK"
     gene            complement(4582..4953)
                     /locus_tag="ACFOCA_000121"
     CDS             complement(4582..4953)
                     /locus_tag="ACFOCA_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986902.1"
                     /translation="MSKDKNQITVGINREIIDTETDSSAEFHVIRHVSLDYATGFNVV
                     LLDSYVRKSTFERRGRSVGSMQLNIPGVPPRGTDVLDWAYQAVVAAVEGGAVDAYGQP
                     ISANSLTGAELVYADLPEAAI"
     gene            complement(5021..5227)
                     /locus_tag="ACFOCA_000122"
     CDS             complement(5021..5227)
                     /locus_tag="ACFOCA_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986903.1"
                     /translation="MKAVRDIALWLAVTVWINFFPDSYRYDTVPQGRHGYWHADHPWY
                     PYARFLLPLFLACILFYRHFRKRK"
     gene            complement(5244..5690)
                     /locus_tag="ACFOCA_000123"
     CDS             complement(5244..5690)
                     /locus_tag="ACFOCA_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986904.1"
                     /translation="MDQAKRTAYVKIINALFDGAVKVQPSQITETVVDMVDKMFDEIA
                     TCHERIRPMAVLADGIAGSIVKLAPNEIPLIFGNSSFGSYLKSKTRDEVFKVLKQSKV
                     NNAGKVLEAFYESWLKYTAKDRRLKVCIVTAQSRWRSRFEMELLGI"
     gene            complement(5761..10026)
                     /locus_tag="ACFOCA_000124"
     CDS             complement(5761..10026)
                     /locus_tag="ACFOCA_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6986905.1"
                     /translation="MGGKSGGGQRTPYEAPNSLSSAQSLRIIDAVSEGVVSGFANGDD
                     APFKSVYFDDTPVQNSDGSYNFNGVTGYFQRGEQDQSYVPGFDASERTVAVSAAVKQN
                     QPMVRAVTDELVSRLRITVAVERNAQVEDNGDTVPADTLMRVELINSNGVQASNQVRF
                     NEKSSGTYYQDVEFDVVPQVPFNIRVFRISPDSKTDKVSNNTYFSSYVEIVDAKLSYP
                     HTAFAALSIDSAQFGNQIPRRNYLMKGRLVKVPSNYNPETRQYTGGTWDGSFKTAWTN
                     NPAWVFYDVLTQPRFSTLARRLNVADIDKWSLYQIGKYCDEPVDDGFGGKEPRFVCNA
                     YITDLMQAGEFLNNLASVFTGLPVWNGQQVSVVMDADADPVAQYTNANVKDGLFNYAG
                     AALKSIHTAVHVQYIDKYDGYRAKTEYVADNEAIARYGLNIKQITAFGCDSRGQAARF
                     GAWTLQTELRQQNAVTFEIGREGLKHLPYDIVQIMDNQYAGAELSGRVAAISGNVLTL
                     DRPVSDAVGALVFYSEGGSLKSAKITAAAGNKVTLEREVPLQAGDTWVLSGKVKPRLY
                     RAIGIKENTDAGTYTVTALLHDPKKYAAVDSFAHFDHEITTLHNTAPVLTDAAVNTDG
                     GTVVVTWDNLAANGQVLTYDIKIYRNNSLYRHIPDAQTAEIRLENLPNGNYRAEIRGR
                     NARGVLSAPLVKAWSIDYTVTGLRTTPKTLSVTVDWVLPQTVVSDLVFELWYSKTNNL
                     QTATKLASLAYPQNSYTLTGVGVADVYYFWVRIRDIAGNTGEFTAAVQGRADNNPAPI
                     VQQIQGAIGKSALSRELIDTLNRDMAAAAGLKVSAEAAERAKALQEEARARTAAIQAE
                     SSARTAELARKSSEIGTRIAATEAVNEQQAQQIQTVTSAQGNTAAGLEAEKKARTDGD
                     RAEAQARETLAVRLGNAESGISALRETVTRQDAARSSEINTLTAKLENVEVGGRNYAL
                     STGTAGKVLTASENNQTKTVTIDVSSALDLKQGDSLIISCDIELVNATSPHGKPYPRI
                     GAEFSVIYADNSVGYFAAWYGEAVSGTTKTLKQRIVAKHTVAKEVKALRSFIVQARYQ
                     TSESIKVSNVKLERGTVATDWSPAPEDSNADTSALTTLSAKVQQASSAVAEIGGKIQS
                     LYTLKTEAIAGGRRAVAGVAVGADGKTGSGEILLMADKVAYVDPKDKTVTPAFVTVIE
                     NGKAKQALNGDLFATGSILAKHIAANQTIEAPTLNGATVNAGLIKGGTIRGARIEAVD
                     LEAANIIGDVVAVRTFELKQSPLGYQELICQIPDSRKTRRTVIVPPVFAVAENGAVVS
                     LQLHMDGVIQREVTIQSPEKRIARNEKFSVWVPGPPPLYIRTPQEVPLSFSVPFHLPK
                     TGSISFQKGIDGAAHSLHILCRISGNFDYSPLGDLSGIVCLIV"
     gene            complement(10162..10884)
                     /locus_tag="ACFOCA_000125"
     CDS             complement(10162..10884)
                     /locus_tag="ACFOCA_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HFC6986906.1"
                     /translation="MITVCLYGGLREYGRRFVLHVETPAEALHALFTQIKGLRQRIRD
                     GVYQVRFDGKDQSEETIGSVFRRPADGVLHIVPRVQGAGKNGGLIQTIVGVVLIVVGA
                     YTSWASGAQLIAVGIGMVAGGVAQMLTKQPKLDADGKGVEESKNSAFSNLANTTAQGR
                     PVPLAYGLCYCGSRVVSQGVQSRRIEPSSTAASSGAVLNLGLSKTFVQGVAATAPNGQ
                     KYRTDFSDDSVRARNYKAAFSG"
     gene            complement(10881..11636)
                     /locus_tag="ACFOCA_000126"
     CDS             complement(10881..11636)
                     /locus_tag="ACFOCA_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6986907.1"
                     /translation="MMDLDLLSEEARREMLACAEEAVPSEMCGVLVFSYEGYEFLPLS
                     NCAENPHETFEISADDWMAAERVGEIVAVVHSHPRGEPFLSGADRWMQVETGLPWILV
                     TQGRLKLFRPVPHLRGRVFEYGKTDCGALVRDAFMLMGLVFPDHPRGDMDEDAAAGFW
                     EKHLENCGFSRVSDGLCAGDVVLTATGGHASHAVLYLGNDWMLHHAYNQLSCRVPYTR
                     YWADVTHSVWRHPDFEPAMMQALENDFTHMEQA"
     gene            complement(11633..12355)
                     /locus_tag="ACFOCA_000127"
     CDS             complement(11633..12355)
                     /locus_tag="ACFOCA_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030430 - host cell cytoplasm [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0046718 - symbiont entry into host cell
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HFC6986908.1"
                     /translation="MNPRIKAMSGVMLQALSAAQQDVLVDLWQVDLRPLGGRVFYFCN
                     QVNERGTAVVWQGQAYEPYPIKADGFESTSQGAGNRPTLTVSNLLGLITGAADQFGQL
                     VGVLVVRRQTYAKFLDAVNFQSGRNPTADPMQEVVGKYLVERMTALNAETATFELAAP
                     SESDGSVIPARIMLANTCCWQYRGEGCGYTGRAVADRFDMPTDDASKDVCSKTLTGCR
                     ARFGATAVLPFGGFPSSDKVTT"
     gene            complement(12415..12684)
                     /locus_tag="ACFOCA_000128"
     CDS             complement(12415..12684)
                     /locus_tag="ACFOCA_000128"
                     /inference="COORDINATES: protein motif:HMM:NF017726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6986909.1"
                     /translation="MTETFRWRVASDNKAVHKFDVRSVRFGDGYEQRQPKSLKPKLRS
                     WEIKIVGQKALMGEIKAFFDARRGVEPFNWRPPDGVPVLVKVSEY"
     gene            complement(12706..15924)
                     /locus_tag="ACFOCA_000129"
     CDS             complement(12706..15924)
                     /locus_tag="ACFOCA_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HFC6986910.1"
                     /translation="MNNETKIYITAETGGVVSGVEKAKQSIKSLGDVASSQGRRISDG
                     LVHSGDGAEKSSTVVSAASKRTERSLASLENAIRRDIAVKIAGGKANREYYEELARQR
                     GIDIARLNPLLSQLDRHNTQTNRATQSVKQFNNALRQTPAQITDIVTQLAGGQSPFLI
                     MIQQGGQLRDMYGGFGGMLKGLATVISPMRLAVAGLGGGIAALGYAMYQGAEESCEYR
                     KALILAGDAAGITADRMQEIAVSVGAATGGYADARAAITALVSSGKVATDNYEQFARS
                     ITLQSQATGQSIDDLVEKYTEIAKDPLKAVVSLSATYRTMTADVYQQVKALQAQGREQ
                     DAVALVQRKFSEESEDMAKRVLGNLGLIERAWKDIKESASEAWDAVKSIGRDKTKLDE
                     IAALDSFISQIETSKKHPVTQLFWGEEGERKLQEAYARRARLRAEIDKEAAAAETLRQ
                     KQKQNQNRTEGIAELEAVSERYATREQQRQRELLKNDKARKKALDGITDAKKRQEIIN
                     KHAANAKLINESFAEKKHERQKEKTDKTSYPTVSNGLRIKPGAEAGGKALGGTYAFAH
                     AMQQMLGDRLFRFGAFRDRYHIGKNSLHNSGLAFDATPSPGMGMKQKQEVVAQMTRYL
                     ESLGFKNGQDFNLKLELAGQRNKNGTVATGDHWHFNWRSREAAARFAGGVEGQVKNMA
                     HLGLFKGVEKEPLSGYEKWHEDFNRRAAEAGAKRVLEILNGNRAIGEQLKLLSDPTFG
                     DWTLKQQADARELAEKADAQDSLTAASKKYSDIVKQMTDDSKEKLDDRLFEISLIGKT
                     REEIEKLTLARLWDRQIAKAREEGAPLESIDLLERGKAEGMSNLSQMQKARADSDNDW
                     RGGIESGLKSYIDSFGTMRQAMENATVQTFDKMGDALADFVATGKLDFRSLTVSILQD
                     LSKMLIKMAIVNAMKSALGYADGGIVGGGSTQFDALFSGGGYTGYGGKYEPAGIVHKG
                     EVVFSQRDVRNHGGVAAVERLRLNGYAGGGAVGLPSVLTGVRSAGAGSMQVNITINRD
                     GSTESDSSADTEMAKHLAAAIPGMVEQWYVKNVYRENGTYHK"
     gene            complement(15917..16189)
                     /locus_tag="ACFOCA_000130"
     CDS             complement(15917..16189)
                     /locus_tag="ACFOCA_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1799 domain-containing protein"
                     /protein_id="HFC6986911.1"
                     /translation="MNVFGFSADDFSEKETTFGVWPCNWQAVQLFIGVSTQWRIGMSG
                     ATGLDYSAVAAVMECGNIKSKKRKALLEKVRLMELEVLSMWAGEHE"
     gene            complement(16237..16548)
                     /locus_tag="ACFOCA_000131"
     CDS             complement(16237..16548)
                     /locus_tag="ACFOCA_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HFC6986912.1"
                     /translation="MAKLTLKPDATFRHTVKIPVPGAEPADVEFEFKARGRKAMKEFT
                     EKHKDGWTADTVLDCVQGWDLEEAFDRQNVEILLDSYPMAVFAIVNGYVEEVFNAREG
                     N"
     gene            complement(16612..17253)
                     /locus_tag="ACFOCA_000132"
     CDS             complement(16612..17253)
                     /locus_tag="ACFOCA_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6986913.1"
                     /translation="MAVKLPNGATVHIATALAAEKKATVATNAAECVLTVAGHGFANG
                     DLVLFKSGWGKLNERVFQIGDVKADTFKLTGIDTSNADEFPAGSGIGAVQKITDWVQV
                     SQIVEFSTSGGEQQYVDFGFLEDDFDQQIPSTKSAMSMSIKIADDTSLSGYKAAAKCS
                     DKGGKWPLKVVLKGGGLICYNGYPSMNKTPELVRNQVMAVTLSYAISGEVNRY"
     gene            complement(17285..17704)
                     /locus_tag="ACFOCA_000133"
     CDS             complement(17285..17704)
                     /locus_tag="ACFOCA_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986914.1"
                     /translation="MTSRLTEIRNAATDVLKTKFQRVYSGRGFAPAQSQLPCVVVYVD
                     RRRTEQETFDFPPTYRHTVRLVTLVCVQAASGADELAEEMLSLIGQLFAEHSDLGVGD
                     LENLVPDLLNIDSDESGEAVTVYYQQGWQAIYFDTAV"
     gene            complement(17685..17987)
                     /locus_tag="ACFOCA_000134"
     CDS             complement(17685..17987)
                     /locus_tag="ACFOCA_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986915.1"
                     /translation="MFNEPLNVFTNPADFGETVMIGGKEVNAIFDREFITDSGFGVAV
                     ANADPQIIVTEDDLPEDVKSVVVTVRGKRYAVAETDFDGCGMVVVQLRAIHDKPTY"
     gene            complement(17980..18207)
                     /locus_tag="ACFOCA_000135"
     CDS             complement(17980..18207)
                     /locus_tag="ACFOCA_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986916.1"
                     /translation="MAKIKIIPTRSFFDGEQTFATGKKYSVDESAAAVYIREGWAAEA
                     PAKEAESPVADGGEAEDSGNASGEGGEDGSV"
     gene            complement(18265..20157)
                     /locus_tag="ACFOCA_000136"
     CDS             complement(18265..20157)
                     /locus_tag="ACFOCA_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HFC6986917.1"
                     /translation="MKKMKPDKAQMQQMSRFAVFQRESVDVEKRTVEVAFSSEESVRR
                     WFGDEVLSHAQGAVDLSRLNDGGAVLFNHDWDDQIGIIERAWIDADKRGRALVRFGNG
                     TKATEKFQDVQDGILRHISVGYRVEDMVLDNPDTDDEGYRYIVTRWMPYEISFVTVPA
                     DPTVGVGRSVEPFIENPVNPTPEKGNRNMDKNQTPTTVETSAAAIPAAAATDTNNTAE
                     RGMQNERARVSELLAIGRSYAAHGGIEAAEKVIKEGGSEAQLRAAIMANMQTKPTVTA
                     GEIGMTDKEQREFSLLRAMSAAATGKWDKAGLEREVSEELEKRHGRAAAGFFVPTDLI
                     ARAYSKGNAANGGNVIENDFREDLFIELLRNRLAVAQLGATVLDGLVGDITIPKHLTG
                     NTVQWVDENGSATESNATFGQMSLKPKTVTANTELSRKFILQSSLSAEQFARSELLKA
                     MMLGIDLAAINGKGTGNEPTGILNTAGIGAVEIGANGGAPEWKHIVALESAIAAANAD
                     IGDLAYITNARVRGLLKTKLKADGVSGYIWQDGATPLNGYRCAVSNQIPSNLTKGTAA
                     NKCSPLIFGNWSDLMIAHWGVLDVIVDPYTKSTTGAVRITTLQDVDIAVRHVESFAAI
                     KDIAAA"
     gene            complement(20138..21700)
                     /locus_tag="ACFOCA_000137"
     CDS             complement(20138..21700)
                     /locus_tag="ACFOCA_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HFC6986918.1"
                     /translation="MAKQSNAAPKKRGFFARLFGRREAVPKTARRNFAGARPVGSLAS
                     WQPQNWSADALARSDLDRLRTRARSLARDNDYMRKFLNMVESNVIGRDGFALQMRVLL
                     DNADKPDALANKAIEAAFSRWARRGVCDVTGQMSFTDLQRLLIRSVARDGEVLIRHIS
                     GFDNDYGYALQVLDIDRLDTGYNVPQQNGRNAVRMGVELNSYSRPVAYWLRTAHPGES
                     YGQTNTGNLRERVPAEQISHIFLHDRPEQRRGFPWVASAIIGLQNLSGYQEAAIIAAR
                     VGASKMGFFKQTEDADNFMPPIDGQEVDNGRGSIDLIDSVEPGTFHELPQGYDFTPFD
                     PDYPHANYDAFVKASLRGIASGLNVAYHSLANDLEGVNFSSIRSGTLEERDTWMTLQN
                     WFADAFLYDVFDRWIEAALLMGAIKMPSGKSLPAGKLDKFKACNWQGRRWSWVDPLKD
                     INAHKEAVALAVKSRRDICAEMGLDFEDVITQIEQENQMLAGKGIIADVKPAASAAEP
                     ESEDNPNEENEA"
     gene            complement(21709..21963)
                     /locus_tag="ACFOCA_000138"
     CDS             complement(21709..21963)
                     /locus_tag="ACFOCA_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986919.1"
                     /translation="MSGHDYAVELEEAREILNSLRKAYKEHAAGRGMTKRYKIKDREM
                     EFSSLADLLKQIRFWQQEIKRLEAAAGVSPRRSGRIITRF"
     gene            complement(21950..22336)
                     /locus_tag="ACFOCA_000139"
     CDS             complement(21950..22336)
                     /locus_tag="ACFOCA_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HFC6986920.1"
                     /translation="MEKQDNITPPHYRSRAVECIEFTERLNFCMGNAFKYVWRHREKN
                     GAEDLKKARWYLQRQLDSCAVMHLLEPEEYAELMDGLEKCELDDLMQHVLEEILYHAF
                     FESEDSLLAAMCGVSELLKGYGDERT"
     gene            complement(22339..22548)
                     /locus_tag="ACFOCA_000140"
     CDS             complement(22339..22548)
                     /locus_tag="ACFOCA_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986921.1"
                     /translation="MYDVFKTRAAELSGAFCSLDFWLCHKFVPLCHALCHFLTRRDID
                     TLIEEGLVEERFEQGVSKFYAKEAV"
     gene            complement(22565..25411)
                     /locus_tag="ACFOCA_000141"
     CDS             complement(22565..25411)
                     /locus_tag="ACFOCA_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5906 domain-containing protein"
                     /protein_id="HFC6986922.1"
                     /translation="MNKKYATKAEINAAAHDRWREVLEACGIPSEILDKKHHPCPSCG
                     GSDRFRFTDGSGSSRGSGVWICNQCKPEGGSPFDLLMDVCGYSFNEARDKVASLLGLA
                     HGDLVDKAPKLLPPPAPVKEEERDLWKPIVPVPEYALNSMSFGNGFRKSDDLIFKSVF
                     RDSSSAVLGGVARFRKSDGGKIDLPYTFCEHKKTGEKMWRWRCWDNPRPLYGLDSLVA
                     DPSLPVLVVEGEKCKNAADAQGYNYAVLTWHGGCNNWDKSDWSAVVDRDVVLWPDCDS
                     LRQKLTKKDRDDGVDPESKPFLPRNEQGGMKAMLGIAEVLTKQNCRVWLVNIPAPGIW
                     PHGFDIADAIADGGRICDPSEVLSWMGAADWLVEYVPEAEMPSENSPAPIQDMEPESE
                     QLHESLEATGNQGGAGDVDDEYLAKLQKLKSEFGLVEGKDHGVNRKTGVTYTRKAMTV
                     HFGKDVVDAWYEWGRAPVLTMYEINRLKKDYALIQAVKDDDTQDMMERFIYLDGSASI
                     WDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRG
                     MPIEPKFPIPKEDMPETNYELYRLFPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQ
                     NVGAKMTTAVVMHGHIHGAGKSFFFEEIVKPMYGEYGATYGQEDLESNYTANRSGKMF
                     GIFEEVYTNQQKYNKTGSQKHMITGKTMRVERKFQDAYEEANHMNCVFLRNESHPFKI
                     EENDRRYFVVWPEKKLDKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEK
                     GYEVIKLEEPVRFDPNTPPPMTAAKQNVISYGRYAWQTFYSEWAGGGIKDLPFCCCIT
                     DDLWLVYKEWCRQNGERETGKTKFLQHIAEKMPRARRWWRTKNKDGDVSCQNWIFKPA
                     GWQAADGLPEMDALGNEVLRFRSAGWRYRGGEEV"
     gene            complement(25526..25873)
                     /locus_tag="ACFOCA_000142"
     CDS             complement(25526..25873)
                     /locus_tag="ACFOCA_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986923.1"
                     /translation="MNRTKTCKECGEIKPITAFPKNGFDRKTGLQKYAPRCRRCHNVY
                     QQDLLYKRREKEFEQKQAVMAALMDAEREKEEAAKARSIAQSLVLAKAACPILHIGLW
                     TEPLFIPQGMLQI"
     gene            26273..26989
                     /locus_tag="ACFOCA_000143"
     CDS             26273..26989
                     /locus_tag="ACFOCA_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HFC6986924.1"
                     /translation="MTMHETTDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGI
                     AAKALPEVAKAFGVSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDD
                     DYVFVPYLKESCFKGGVGTYEIPDYNGYRLPFGKSTLKRKGINPDNVFCCTLTGDSME
                     EKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDE
                     NAPLDSLTVIGRVFWWSVLD"
     gene            27092..27517
                     /locus_tag="ACFOCA_000144"
     CDS             27092..27517
                     /locus_tag="ACFOCA_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986925.1"
                     /translation="MNFLGVQGELKVHELHHRTATLCFEWLGEVSAPRRKENYKDLKP
                     NVLYDFDGSGKHFANPDARYLLPVGSSGLILKHIQIDDEDTLLRLWCARNIPMPHRLS
                     KIPMLRQYYLSKAWHEIYAINQHLRKTKLIVDVAYGPTD"
     gene            27748..27948
                     /locus_tag="ACFOCA_000145"
     CDS             27748..27948
                     /locus_tag="ACFOCA_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986926.1"
                     /translation="METITIPKENFDALLNLARTAVALNENFIPKINYGASTIPAAGF
                     AALNEFGIARSTVESLEILKIK"
     gene            28016..28375
                     /locus_tag="ACFOCA_000146"
     CDS             28016..28375
                     /locus_tag="ACFOCA_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986927.1"
                     /translation="METQEKKFVPASKQIPTVNSGWLDRELGEAMSEAVRACLAHGKQ
                     SEITVKLKIQPQNIQSGTVKISHDVATKLPKEKREGGIVFATPDGNIQADDPAQGKLK
                     LKQVPNTSSTLKMVRSN"
     gene            28400..29254
                     /locus_tag="ACFOCA_000147"
     CDS             28400..29254
                     /locus_tag="ACFOCA_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HFC6986928.1"
                     /translation="METQENMIKTALQAAQKPFFEFAPNNTLLVFTPDQDGGWRYKSH
                     PELMQNPYRKCGKFLMHDTASLIKFVQKHKQDGTQIYIDADFKSGRIDVTAVINGHTQ
                     QAPGWLDFYAVYTPQHTTSASNWLNNNAHRMNQMEFSHFLTNNARNIVSKNPGNENSV
                     YPTAAEVLDFALNLEYTEKTTFKQGYREQDGRINFTFQSEDSGQTEKNLKMFERFGIE
                     FTPHQGGASYFVEALLKFRIDKNSGALVLWYELQQIDAVIEQAAKDISEAVQKAFPEI
                     DIYFGIIA"
     gene            29326..29541
                     /locus_tag="ACFOCA_000148"
     CDS             29326..29541
                     /locus_tag="ACFOCA_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986929.1"
                     /translation="MTITEEYSIDIRVTAEQGKNDYGYPTERYGCDIINTDGELLVGI
                     EPEYKTPFAAVRKALICLAKDNLKNAA"
     gene            29577..29837
                     /locus_tag="ACFOCA_000149"
     CDS             29577..29837
                     /locus_tag="ACFOCA_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO1622 family putative holin"
                     /protein_id="HFC6986930.1"
                     /translation="MKYLIRTALLAVVAAGIYACQPQSEAAVQVKAENSLTAMRLAVA
                     DKQAEIDGLNAQIDAEIRQREAEELKDYRWIHGDAEVPELEK"
     gene            29834..30127
                     /locus_tag="ACFOCA_000150"
     CDS             29834..30127
                     /locus_tag="ACFOCA_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986931.1"
                     /translation="MNFQEENENIKNDIEINLLHSAEADSVEAMMDLAVYGLAAMVAK
                     HNKTRGEQLVLQAIAGHMRKLLAALPETESLVQTGKVYRRLEDLIFKTYLPEQ"
     gene            30130..30321
                     /locus_tag="ACFOCA_000151"
     CDS             30130..30321
                     /locus_tag="ACFOCA_000151"
                     /inference="COORDINATES: protein motif:HMM:NF037202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type ISP restriction/modification enzyme"
                     /protein_id="HFC6986932.1"
                     /translation="MNTNQDTIPFGGNLVICCSTGNGGDGRFSCLITDQIPDLNLVRS
                     GQAFPMFIYEYETREKRKA"
     gene            30321..30461
                     /locus_tag="ACFOCA_000152"
     CDS             30321..30461
                     /locus_tag="ACFOCA_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6986933.1"
                     /translation="MDTLLKIIIALSFSGAEALAVWLFITAADAVLRRFPKPSHYRRV
                     KK"
     gene            30458..30667
                     /locus_tag="ACFOCA_000153"
     CDS             30458..30667
                     /locus_tag="ACFOCA_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6986934.1"
                     /translation="MNINELGARIDRPTIRELIAYATCRNRPISNSTLLRMEKDGRIP
                     CRLKTPLTSPVWDTREVLEALGLQQ"
     gene            complement(30725..31642)
                     /locus_tag="ACFOCA_000154"
     CDS             complement(30725..31642)
                     /locus_tag="ACFOCA_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HFC6986935.1"
                     /translation="MNVSVLNFGNTPVSFRQDGFLNATAIASHFGKLPKDYLKSEQTQ
                     QYISALAENLSVRRKILTEANQIVIVKRGGSEQGTWLHPKLAIHFARWLNPKFAVWCD
                     EQIEILLNGKISDGIKTVTPKPTRALPDGLTGEQIEAVKKLHNALTKSAPKEAQARIA
                     ITLWSAVKSKFGCSYKEVPAEQFPEVLSVMSRVAVENGVLYGEVLDREPLPAPQPALP
                     ISGNALYDLAVAVRYGAWAIQMGRDVSLPLKQLGCKQAVTMWTVWAETRSRLKAAANA
                     LEALNAHADAEHAAKIRPMLPEIRNLSSV"
     gene            complement(32510..32989)
                     /locus_tag="ACFOCA_000155"
     CDS             complement(32510..32989)
                     /locus_tag="ACFOCA_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6986936.1"
                     /translation="MTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAE
                     RNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGG
                     ALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK"
     gene            complement(33425..33806)
                     /locus_tag="ACFOCA_000156"
                     /pseudo
     CDS             complement(33425..33806)
                     /locus_tag="ACFOCA_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694162.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
     gene            complement(33963..>35073)
                     /locus_tag="ACFOCA_000157"
     CDS             complement(33963..>35073)
                     /locus_tag="ACFOCA_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFC6986937.1"
                     /translation="GLALWVYPTGGRSWKLSFVQDGRQQTISLGRYPDFSLADAREWR
                     EEVRRKRAHGENVVNKKVRADFAFEKVTRDWFVRWSKGRSEKYAGQVMRNFERWVFPA
                     IGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMEINPVAQI
                     GSGVFERAKTGNMAALSPSELPRLIDFLEQRNEFAVYAGRVRIHPVTRLCIYWLLLTM
                     TRIQEAALMEWSELDGEVWRIPAERKKERRGHDVPLSRAMQWVLDQARALNVNGRFVF
                     ESVNFQGHINKESPRVAMQRAGLDTTAHGLRSLARTYLREVLKVDNDVAEKLLAHSLG
                     TRTQTAYNRSELWEERKDALERWGNDVLRLAKNGK"
BASE COUNT         8689 a         9771 c         8067 g         8546 t
ORIGIN      
        1 cttgaacaaa aaagaaccgc cctgattcag ggcggttatg ttttctggcg gaaacggtgg
       61 gattcgacta aattttattt cattgattta aatatattta tttcttatga aaatttaatt
      121 taccataaaa acagccatat acaaaaatct tggagtaact attgcattac actattagaa
      181 gaatgccgtc tgaagtgttt tcggacggca tttcccaagc tgccggaaaa aagctaaaat
      241 gcccgcaaac agacaaggag cagcgatgca aaaccaaaat acacgccccg tcaaaatcga
      301 gcttaaaggc gaagcaggca aacgcgtact gcttgccgcc gcccgccgca ttgccaaaac
      361 ccatcaaaaa gccgtcaagg cacttgccga caaatgatag acggcgaact ggtcgcgctt
      421 atccatcaaa ccgtattggc ggatgaagcg ggtttgaaag ggcgggcgga tatggcgtgc
      481 ttggacggcg cattgtcgcg gattgccaac tggcggcagt atgaaaacct tgaggacatc
      541 tacgaaatcg ccgccctcta tgcacaagcc atagccaaag cccacgcctt tcccgacggc
      601 aacaagcgca ccgcgctttt aacaatgttg acctatctgg atttgcaggg catcagcatt
      661 gccgccgacc aagggcttga cgacttgatt gtcagtttgg cggcgggaga aaccgacttc
      721 aaacagctcg ccgaaaccct gcgccggctg gataaggaat aggcatatcc gacaacaatg
      781 ccgtctgaaa ttcagacggc atttttattg aaaggctttt ttgcaaccgc tttacacaaa
      841 ggcggttttt ttatgccgtc tgaaagccct tcagacggca tttgtttaca cggcaggagt
      901 ccccccgcct ttaagcagga gaggatgtca aggatgcctg atttttaaat caccccttga
      961 aagaacgggc gcacggcatt aatatacaga tatcgacaag caaggttaca accattaagg
     1021 aaatacgatg aaatacaaaa atgagggttt taatggctgg taaggtgcgg aaacaaataa
     1081 aacaaggagg ttggttgtca gtaattgccc taacctcctt gtttgtatct gtattcactt
     1141 tattttacat attcaggcac agcgtacagt ttaacctatg gggggcggcc gaatggctga
     1201 tgttttggca actgaccgtt gtttcagtaa ccgccgtcat tgcactgggg acaatattca
     1261 tcaataagaa aacttcaaag caaaaggcga cattagatgt tattttgaat gattaccaag
     1321 atgcacaatt tgtagaagcc gacaatcata tttcgcctta tattcgcggc acggcagttg
     1381 acgacaacaa cgcgcggatc gacctgtatg aaatttatca aaataagggc ggacaatggg
     1441 aaaaagagag agggcattta cttaccgtaa tcaatcggca cgagttttat gcgtgcgcaa
     1501 tcaactcggg agtattggat gaggatttgt ttaaacggct gcattgcacc aacttcataa
     1561 aattgtggaa tgcagtttcg cctcttgtta tgaaaatacg cgaagaagaa cgcaaagaca
     1621 caatatttag agagttggaa attttggttg cattatggaa agcaaacccc ctaaaggcat
     1681 ctgatttgtg aataaacagt caaaactgtt ctgaaatatg ggcagccacg caatcgccga
     1741 aatacgccaa agcagcctta taaagtgatt ttttgaacat aattttctcc ttgcggagca
     1801 ttttccaatc aaacagtttt agtttacttg gttttgtatc cctaaacaac cgaaatccga
     1861 catcaagcaa ttagaaagct tttgcatctt gaaaatggat aacaaaatat tgcctgaagg
     1921 cgcaaataca gtacaaaagc cgtccgaaac agttcggacg gcttttggcg tattctgcac
     1981 aagtatttga acaactgaaa ttttatggta atatgtatct actttgtaga tacaataaag
     2041 gtgaagatta tgttgcgtgt ccaaaaatgg gggaactcgg cggccgtccg actgcctgcc
     2101 gacatgctga aacaattgga ttttaaaatc ggcgacgctt tggtagcgga agtacataac
     2161 ggcgaactcc gtgtgcgtgc tgcccgacgt ttccgcttgg cagacttgct tgccgaaatg
     2221 gaagaaaccc cgccgcgcgt agaaggctgg gaaatcttgg atgatgtcgg caacgaggtc
     2281 gtctgaaatg tatattcccg acaaaggcga tattttccat ttgaatttcg acccttccag
     2341 cggcaaggaa atcaagggcg ggcggtttgc gctggctctg tctccaaaag cattcaaccg
     2401 cgcaacggga ttggtttttg cctgccccat ttcacagggg aatgcagcgg ctgcacgaag
     2461 cagcggcatg atttcaacct tactcggtgc aggaacggaa acgcagggca atgtccactg
     2521 ccaccagctc aaatctctgg actggcaaat ccgcaaggct tcttttaaag aaactgtacc
     2581 cgattatgta ttggacgatg tgctggcgcg catcggcgcc gtcttattcg attaaatgct
     2641 gaaaccgccc gaacctgtaa tcttttctta caggttcggg cggttgctta ttcggcacgc
     2701 tgactgctta ctgcatgacc atatgcctgc cattccctta aatcggctgc atgtccgtcg
     2761 gctgtttctg ccagtcctgc atatttttca gcgcactgtc cgaataatag ccagccttgg
     2821 gaatctgacg cgccatcaga tgcggtggcg gcggtagtgg ttgcgggcag gtttctgttg
     2881 cgattttggg cggcggcgta gtggcgcagg cggttaagct caagacgcat agcggcaaca
     2941 gttttttcag cattttgttt ttcctcttct aatttggttt gtcgttcggc aaacgcggca
     3001 gcggccttct gctcggcaga acgcgcctgc tttgcctgct cgatatagcc gtctttcaga
     3061 cgattcgaaa tttcggcagc agcagcctcc cgtcccatgc ggtatttttc ggcacggtcg
     3121 aaatgccatg cggtaaaaat caggacgatt agcagcaata cgcctaccgg cttccagtat
     3181 ttcaataaaa tatccatttc agacgacctc aaggatgcag cccgggcaga tacacggttt
     3241 tgccgttttt cttggttgcg gtcagtatct ggttgcgttg cgggctgttg cgtcggaaac
     3301 cgatgtgtac ccatgcgccg tccccgcgct cgggaaattc gagtatcaac tggtcgaatt
     3361 tcagcgcgcc ttcatcacgc attttgatta acagtttggc aaatgccggc gaggtcatac
     3421 ccgatgcgtc acaatcggcg gcaagtccgt gccggtgcgc cgatgtcggg ctgccaccga
     3481 ccaatttgtt tacccgctcg ctgcggaagc agcttgttac gataatcggg cgaccgacgt
     3541 attcgcggat tttttcaagc tgctgtgcgg tgtaataaat gttgtccatg tcggcgggcg
     3601 acggttcgtt cggtacacct gcgcgacgcg cggtttcact gcgtgtcaac tcgcgcagac
     3661 tgaaattttt ggtaacttgc atttcggttc tccatgttct tttcaaataa aaaaccgcct
     3721 aaacgacagg cggctatctc aataattctg cgtataaagt tttgatacga aaacgccgcg
     3781 aagctgcata ctttgcggcg ttttgctttt ttcaggcaaa ctatttcaaa ccatgccgat
     3841 gccgccattt gacaacccgt accgaacggc tgccgaaata tacacaggcg gcaatatcca
     3901 tcataaattt gcctaagctc ggcgtcagtc cgtaagcaaa gactatgtaa aaggtataga
     3961 tcgctccacc taaaaaggcg agatacgccc acgcctccgg cgacaatgca ctccatttgc
     4021 gcccgttcag acgacaaatc atcaagtacg ccgaaatcag tgatggggcg gcagaaagaa
     4081 tcaaaagtaa tttcattttt tcggtctcca cggcagaaga ttcagcagcc actccacaat
     4141 atcgtctgca tgcttttcga acgatggcca gacagcgcgg gcaaatctca acaatacctg
     4201 ccacaacaag ccgacaacga cgggggcaaa ggcatgtgca aactgtatgc gctgctcacc
     4261 cagcgacgga tggctgccaa ctacttcgcc gattaagaaa tgcgtcagcg gtggggcaaa
     4321 agcgccaccc aaaagcccgc cgataacgat ataggccact accatccagc ggcttttcgg
     4381 ctcgcttatc atcgttaccg ccgccgaagc cactgcgccc agcacgactg catcgacagg
     4441 catccccaac agataacctg cgccgaccac gccgccaaaa atataaacgg cggcaggggt
     4501 aataatcggt tcagacattt tcttttccct tatgcgaagg tcgtctgaaa ctgtttttca
     4561 gccgaccttc cgtgttatga atcagatggc tgcttcaggc aaatcggcat agaccaactc
     4621 cgcgccggtc aggctgttgg cggaaatagg ctgaccgtag gcatcgaccg cgcccccttc
     4681 aaccgctgct acaacagcct ggtatgccca gtccaataca tccgtaccgc gaggcggcac
     4741 gcccggaata ttcaactgca tcgaaccgac cgaacgtccg cgacgttcaa atgtcgattt
     4801 gcgcacatag ctgtctaaca acaccacatt aaagccggtt gcataatcca gcgacacatg
     4861 tcggatgacg tgaaactcgg cagaactgtc ggtttcggta tcgatgattt cacggttgat
     4921 tccgacggtg atttgatttt tgtcttttga catgatggtt tcctttggat aaaaaaagac
     4981 cgtctgaacc attcagacgg tttcggtttt gcagccgtat ctatttccgt ttccgaaaat
     5041 gacggtagaa aaggatacag gctaaaaata aaggcagcag aaagcgcgca tagggatacc
     5101 acggatggtc tgcatgccag tatccgtgcc gtccctgtgg aacggtatca tagcggtaac
     5161 tgtcggggaa aaagttgatc caaaccgtta ctgccagcca taaggctata tccctgactg
     5221 ctttcattta cttctgctcc tgtttaaatt cccagcaatt ccatttcaaa gcgcgaacgc
     5281 caacgggatt gcgcggttac gatgcagact ttcagacggc ggtcttttgc agtgtacttt
     5341 aaccagcttt cgtaaaatgc ctcaaggact ttaccggcat tattaacctt gctttgcttc
     5401 aacactttaa acacttcatc acgggtttta cttttcagat agcttccaaa cgacgaattc
     5461 ccaaaaataa gcggaatttc gtttggcgca agtttgacaa tacttcctgc aataccgtct
     5521 gccaacaccg ccatcggcct gatgcgctca tggcaggtcg caatttcgtc aaacatcttg
     5581 tccaccatat caacgacggt ttcggtaatt tgactgggct gcaccttgac agctccgtcg
     5641 aataaagcgt taataatttt aacataggct gtacgttttg cctgatccat aaataaacct
     5701 ccataaaaaa gcccaccctc aggcaggcag aaaaaagccg tcctttcgga cggctaaaat
     5761 ttaaacaata agacagacaa tacccgataa atcgcccaag ggtgaataat caaaattgcc
     5821 gctaatgcgg cagaggatat gcaacgaatg tgctgcacca tcgataccct tctgaaaaga
     5881 tatactgcct gtctttggta gatggaatgg gacggaaaaa ctaagaggca cctcctgcgg
     5941 agtccttata tacagcggcg gagggccagg aacccatacg gaaaactttt cgttacgcgc
     6001 tatcctcttt tcaggtgact gaatcgtaac ctcccgctga atcacaccat ccatgtgcag
     6061 ttgtagactg acaactgcac cattttctgc aacagcaaaa accggcggca cgataaccgt
     6121 ccggcgtgtt tttcggctat cagggatttg gcatatcaat tcctgataac ctaatggcga
     6181 ctgcttcagc tcaaacgtcc tgaccgccac gacatctccg atgatattag cggcctccaa
     6241 atccacggct tcaattcgcg cgccacgtat cgtaccaccc ttaattagac ctgcattgac
     6301 ggttgcacca ttcagcgttg gggcttcgat agtctggttg gcagcgatgt gctttgccag
     6361 tatcgaacca gtcgcgaaca ggtcgccgtt caaagcctgc ttcgccttgc cgttttcgat
     6421 aacggtaacg aaagcgggcg taaccgtctt atctttcgga tcgacataag caactttatc
     6481 tgccatcagg aggatttcgc cacttcccgt ctttccatcg gctcccactg caacccctgc
     6541 aactgcccga cgaccgcctg ctattgcctc agtcttcagc gtgtacaaag actgtatttt
     6601 ccctcctatc tctgcaacag cagaactggc ctgctgaact ttagccgaca aggtagtcaa
     6661 agcagacgta tcggcgttac tgtcctccgg tgcaggactc cagtcagttg ctaccgtgcc
     6721 gcgctccagt tttacatttg aaaccttgat ggattctgat gtctgatacc gcgcctgaac
     6781 gatgaagctt cgaagtgctt taacctcttt ggcaaccgtg tgtttggcga caatacgctg
     6841 tttcagcgtt ttggtcgtac cgctgacggc ttcgccgtac cacgcagcaa aataacctac
     6901 cgagttgtcc gcatagatta cggaaaattc cgcaccgatt cgcgggtatg gtttgccatg
     6961 aggcgatgtg gcgtttacca gttcgatatc gcacgagata atcaaactat cgccttgctt
     7021 cagatccaaa gcagacgaaa cgtcgatagt gacggttttg gtctgattat tctcgctagc
     7081 ggtcaacact ttgccggctg ttcctgttga taaggcataa ttccgaccgc cgacttcaac
     7141 attctccagc ttcgccgtca acgtgttgat ctcagacgac ctggcagcat cctgacgtgt
     7201 tacggtttcc cgcaatgccg aaataccgct ttctgcatta ccaagtctga cagccagtgt
     7261 ttcacgcgcc tgcgcctcgg ctctgtcgcc atcggtacgg gctttttttt cggcttccag
     7321 cccggcggcg gtattgcctt gcgcagacgt aacagtttgg atttgctgcg cctgctgctc
     7381 attgacagct tctgttgcgg caatacgcgt accgatttcg gatgactttc tggcaagctc
     7441 ggcagttcgg gcagatgatt ccgcctgtat tgccgccgtt cgcgcccgtg cttcctcctg
     7501 taaggcttta gcacgttccg ctgcctctgc agacactttc aaccccgcag ccgcagccat
     7561 atcacgattc agcgtgtcta tcagctccct gcttaatgca gacttcccga ttgcaccctg
     7621 aatctgctgc actatcggcg caggattgtt atctgcccta ccctgtacgg cagcggtaaa
     7681 ttcccccgta tttcctgcaa tatcacgtat gcgcacccag aaataataaa cgtcggcaac
     7741 gccgacgccg gttaaggtat aactgttttg cggatacgcc agcgacgcga gtttcgttgc
     7801 cgtctgaaga ttgttggtct tgctatacca cagctcgaaa accaaatcgg aaacaacggt
     7861 ttgcggcaat acccaatcca cggtcacaga cagtgttttc ggcgtcgtcc tcaatccggt
     7921 aacggtatag tcgatactcc aagccttaac caacggtgcg gacagtacac cccgtgcatt
     7981 acggccgcgt atttccgccc gataattgcc gttcggcaga ttttccaaac gaatttccgc
     8041 tgtctgtgca tcagggatat ggcggtatag gctgttgtta cggtaaatct taatatcgta
     8101 agttaaaacc tgaccgtttg cggccaggtt gtcccatgtc accacaactg tcccaccgtc
     8161 ggtattgaca gccgcatcgg tcaacacagg ggcagtgttg tgcagcgtgg taatttcatg
     8221 gtcaaaatgc gcaaaactat ccacggcagc atattttttc gggtcatgca gcaacgcggt
     8281 aacggtataa gtacccgcat ccgtattctc tttgatgccg atggcacggt agaggcgcgg
     8341 cttgactttg ccggataaaa cccacgtatc gccagcctgc aacggcacct cacgctccaa
     8401 agtaacctta ttgcctgctg ccgcagttat cttcgctgat ttcagactac cgccttcaga
     8461 ataaaacacc aaggctccga ccgcatcgga tacaggtcga tccagcgtca gcacattgcc
     8521 cgaaatggcg gcaacacgtc cagacaactc tgcacctgcg tattgattgt ccataatctg
     8581 cacgatgtcg taaggcagat gcttcaaccc ctcacgcccg atttcaaacg ttacggcgtt
     8641 ctgctgccgc aactcagttt gcagcgtcca tgcgccgaaa cgtgccgcct gcccgcgcga
     8701 atcgcagccg aacgcagtaa tctgcttgat attcaaacca tagcgggcaa tggcttcgtt
     8761 gtcggctaca tattctgttt tagcgcgata gccatcgtat ttgtctatat actgcacatg
     8821 aacagcagta tgaatggact tcaacgctgc acccgcataa ttaaacaggc cgtctttaac
     8881 attggcattg gtatattgcg ccaccggatc ggcgtcggca tccatgacga cggatacttg
     8941 ctgtccgttc caaaccggta aaccggtaaa gacgctggca agattgttca aaaattcacc
     9001 tgcctgcatc aggtcggtaa tgtaggcgtt gcagacgaaa cgcggctctt tgccgccgaa
     9061 gccgtcatcg accggctcgt cgcaatattt cccgatttgg tacaggctcc atttgtctat
     9121 gtctgccaca ttcagacgac gtgccagcgt ggaaaatctc ggctgggtca gcacatcgta
     9181 aaaaacccat gccgggttgt ttgtccatgc ggttttgaaa ctgccatccc atgttccacc
     9241 cgtatattgg cgggtttcag gattgtaatt ggacggcact ttgaccaagc ggcctttcat
     9301 caaataattg cgacgcggaa tctgattccc gaactgcgcc gaatcaatcg acaatgccgc
     9361 aaacgcggta tgcggatagc tcaatttcgc atcaacgatt tcaacgtagg acgaaaaata
     9421 ggtattgttg ctgaccttgt cggtcttgga atcaggcgaa attcggaaaa cgcggatatt
     9481 gaacggcact tgcggcacca catcaaattc gacatcctga taatatgtcc cgctggattt
     9541 ttcattgaaa cgcacctgat ttgatgcctg cacaccattg ctgtttatca actcaacgcg
     9601 cattaaggta tcagcaggca cggtgtcgcc gttgtcttca acctgtgcat tccgctcgac
     9661 agcgaccgta atccgcaaac ggctgaccaa ttcgtcggta acggcgcgaa ccatcggctg
     9721 attctgcttc accgcagccg aaacggctac ggtgcgctcg gaagcatcga aacccggaac
     9781 ataggactgg tcttgctcgc cacgctggaa ataacccgta actccattaa aattgtagct
     9841 gccgtccgaa ttttggacag gagtgtcatc aaaatacacg cttttgaacg gcgcatcatc
     9901 gccgttggca aaccccgaaa ccacaccttc ggataccgca tcaataatcc gcagcgactg
     9961 ggcgctggat aaactgtttg gggcttcata aggtgtccgt tgtcctccgc ccgatttgcc
    10021 gcccatattg tttcctttcc tgattcaaaa ccttacttca cggtattcag aataccgatc
    10081 aaagcccaaa aatacacaaa caaaaacaga cacgccgcga agtttgctcc ttcgcggcgt
    10141 ttcgattttt cagacgacat ttcagcccga aaacgccgcc ttataattgc gcgcccgcac
    10201 gctgtcgtct gaaaagtcgg tacggtattt ctgcccgttc ggcgcggttg ctgctacgcc
    10261 ttgaacgaat gtcttggaca aacccaaatt caacaccgca cctgacgaag ccgccgtcga
    10321 tgacggttcg atacggcggg actgcacacc ctgcgataca acacggctgc cgcagtagca
    10381 aagcccgtaa gccaacggca cagggcgacc ctgtgccgtt gtattggcaa ggttggaaaa
    10441 agcagaattc ttactctcct ccaccccctt gccgtcggca tccaatttgg gctgtttggt
    10501 caacatttgg gcgacaccgc cagccaccat accgataccg acggcgataa gctgcgcacc
    10561 actggcccaa ctcgtatacg caccgactac aatcaaaacc actccgacaa tggtttggat
    10621 caacccgcca tttttacctg caccctgtac gcgcggaaca atgtgcaata caccgtcagc
    10681 aggtcgtctg aaaacgctac ctatcgtttc ttccgactgg tctttaccgt caaaccgaac
    10741 ctgatacacc ccgtcccgaa tccgctgacg caagcctttg atttgggtaa acagagcgtg
    10801 cagggcttcg gctggcgtct cgacgtgcaa aacaaaacgg cggccgtatt cgcgaaggcc
    10861 gccgtacaga caaacagtaa tcatgcttgc tccatatggg taaaatcgtt ctcaagtgcc
    10921 tgcatcatgg ccggctcgaa atcgggatgc cgccaaacgc tgtgcgtaac atccgcccaa
    10981 tagcgggtat aaggtacacg gcagctcaat tgattgtagg catggtgcag catccagtcg
    11041 ttgcccaaat acaggacggc atgggacgca tgcccgcccg ttgccgtcaa gaccacatcg
    11101 ccggcgcaaa ggccgtctga aacacgggaa aacccgcagt tttccaaatg cttttcccaa
    11161 aagcccgccg ctgcgtcctc atccatatca ccgcgtggat ggtcgggaaa aaccagcccc
    11221 atcagcatga aggcatcgcg caccagcgcg ccgcaatccg tcttgccgta ttcgaataca
    11281 cgcccgcgca aatgcggaac ggggcggaac agtttcagac ggccttgtgt aaccaaaatc
    11341 caaggcaagc ccgtttcgac ctgcatccat ctgtctgcac ccgataaaaa cggctcgccg
    11401 cgcggatggg aatgcacgac tgccacaatc tcgccgacgc gctccgccgc catccagtcg
    11461 tcagcggaaa tctcaaaggt ttcatgcgga ttttcggcgc aattggacaa aggcagaaac
    11521 tcatagcctt cataactgaa aaccaaaacc ccgcacattt cagacggtac ggcttcttca
    11581 gcacacgcca gcatttcgcg gcgggcttct tcacttaaca aatccaaatc catcatgtcg
    11641 ttaccttatc actagatggg aaaccgccga acggcaaaac tgccgtcgcg ccaaaccgcg
    11701 ccctacatcc tgtcagtgtt ttgctgcata cgtctttgga cgcatcgtcc gtgggcatat
    11761 cgaaacggtc ggcaaccgca cgccccgtat aaccgcaccc ttcgccgcga tactgccagc
    11821 agcaggtatt tgccagcata atacgggcgg gaatgaccga accatccgat tcggacggcg
    11881 cggcaagttc gaaggttgcc gtttctgcat tcaatgccgt catccgttca accaaatatt
    11941 tgccgacgac ttcctgcatc gggtctgcgg tcggattgcg cccggactgg aaattgaccg
    12001 catctaaaaa cttggcatag gtttgacggc gcacaaccag cacgccgacg agctgaccga
    12061 actgatccgc cgcgcccgta atcaaaccca agagattcga taccgtcagc gtcggacggt
    12121 tacccgcgcc ttgcgaagtt gattcaaagc cgtcagcctt aatcggataa ggctcatatg
    12181 cctgtccctg ccagacaacc gccgtacccc gctcgttgac ctgattgcag aaatagaaaa
    12241 cccgaccgcc cagcggccgc aagtccactt gccacaaatc gaccaaaaca tcctgctgcg
    12301 cggcagacaa ggcttgcagc atcacacccg acatggcctt tatacgcgga ttcatgaaag
    12361 cacctcctca aacgtacagc tcaattcgta ggctttgcca cccttcgccg tttcctaata
    12421 ttccgatacc ttgaccaata caggcacgcc gtcgggcggt ctccaattaa acggctcaac
    12481 accgcgccgg gcatcaaaaa aggctttgat ttctcccatc aaagcctttt gtccgactat
    12541 cttaatctcc cagcttcgca gcttcggttt caaagattta ggctgccgtt gctcgtagcc
    12601 gtcgccaaag cggacggaac ggacatcgaa tttatgtaca gccttattgt ccgaagcaac
    12661 acgccatcgg aatgtttcag tcatgatcgg ttcctttcag acgacctatt tatggtaagt
    12721 accgttttca cggtacacat tcttgacata ccactgttcc accatgcccg gtatggcagc
    12781 ggcaagatgc ttcgccatct ccgtatcggc actgctgtcc gattcggtgc taccgtcccg
    12841 atttatagtg atgttgacct gcatgcttcc agccccggcc gaacggactc cggtcaaaac
    12901 ggacggcagt cctactgcgc cgccaccggc ataaccattc aaccgcagcc gctcgacagc
    12961 cgcaacgccg ccgtgattac gtacgtcccg ctgggaaaat acgacttcgc ccttgtgaac
    13021 aatgccggca ggctcatact tcccgccgta gccggtatag ccgccgccgg aaaacaacgc
    13081 gtcgaactgc gtacttcctc caccgacaat accgccgtcg gcataaccca acgccgactt
    13141 cattgcattg acaatcgcca ttttaatcag catttttgac aaatcctgca aaatggaaac
    13201 agtcaggctt cgaaaatcaa gtttgcctgt ggcaacaaag tctgccagcg catcccccat
    13261 tttgtcgaag gtttgtacgg tggcattttc catcgcctgc ctcatcgttc cgaatgaatc
    13321 gatgtagctt ttcaagccgg actcgatacc gccgcgccaa tcattgtcgc tgtctgcacg
    13381 cgccttctgc atttgagaaa gattgctcat cccttccgcc ttgccgcgct ccaataaatc
    13441 gatactttcc aacggcgcac cttcttcacg ggctttcgct atctgtctgt cccacagtct
    13501 cgccagcgtc agtttctcga tttcttcacg ggttttgccg ataagcgaaa tttcaaacag
    13561 cctgtcatcc aacttttctt tcgaatcgtc ggtcatttgc ttcactatgt cggaatattt
    13621 tttggaggcg gccgtcaaac tatcctgcgc atcggccttc tccgccagct cgcgggcatc
    13681 ggcctgctgc ttcagcgtcc aatcgccgaa agtcgggtcg gacaacaact tcaactgttc
    13741 gccgatggcg cggttgccgt ttaaaatttc cagcacccgc ttcgctcccg cctccgccgc
    13801 ccgacggtta aaatcctcgt gccatttttc gtagccggaa agaggttctt tctccactcc
    13861 cttaaacaac ccgaggtgcg ccatattttt cacctggccc tcaacaccgc cggcaaatcg
    13921 cgcagccgcc tctcgagaac gccagttgaa atgccagtgg tcgccggttg ctaccgtacc
    13981 gtttttattg cgctgtccgg caagttccag tttaaggtta aaatcctgcc cgtttttaaa
    14041 ccccaacgac tcaagataac gggtcatttg ggcgacaact tcctgtttct gcttcatccc
    14101 cataccggga gaaggagtgg catcaaatgc caatccactg ttatgcaggc tgtttttccc
    14161 aatgtggtat cgatctcgga aggcgccgaa acggaacaga cggtctccca gcatctgctg
    14221 catggcatgc gcgaaggcat atgttccgcc tagcgctttg ccgcccgctt cggctcccgg
    14281 tttaatcctc aagccgttcg aaacagtggg gtagcttgtt ttatccgttt tttctttctg
    14341 tcgttcgtgt tttttctcgg caaaactttc attaatcagc ttggcatttg ccgcgtgctt
    14401 attaatgatt tcttgccgct ttttcgcgtc agtgatgccg tccaacgcct ttttccgtgc
    14461 tttgtcgttt ttaagcagtt cgcgctgccg ttgctgctct cgagtggcat aacgttccga
    14521 aacagcctcc aattcggcta taccttcagt tcgattttgg ttctgcttct gtttctgccg
    14581 caaagtttca gcagcggctg cctccttgtc gatttcggca cgcaaccggg cacgccgcgc
    14641 ataggcttcc tgcagcttac gctcaccctc ttcaccccaa aacaattgtg taaccggatg
    14701 tttcttgctg gtttcgattt gggaaataaa cgaatctagc gcggcaattt catccagctt
    14761 ggtcttgtcc ctacctatgg atttaacagc atcccatgcc tccgacgcac tttctttaat
    14821 atccttccac gcccgctcaa tcaacccaag attacccagt acgcgttttg ccatatcctc
    14881 cgactcttcg gagaatttcc gctgcaccaa tgcaaccgcg tcctgttccc gaccttgtgc
    14941 ctgcaaagcc ttgacctgct ggtaaacatc ggcagtcatt gtccggtagg tggctgatag
    15001 ggataccaca gctttcagcg ggtctttggc gatttcagta tatttctcaa ccaaatcgtc
    15061 aatactttgc cccgttgcct gcgactggag ggtaatactc cgggcgaact gttcgtaatt
    15121 gtccgttgca accttgccgc ttgagaccaa ggccgtaatt gcagcacgcg catcagcata
    15181 gccgcccgtc gctgccccga ccgaaacagc gatttcctgc atcctgtctg cagtaatccc
    15241 tgctgcatct ccggcaagta tcaaggcttt acggtattcg cacgattcct ctgccccctg
    15301 atacatcgca taacccaatg ccgcaatgcc gccgcccaac cccgcgacag caaggcgcat
    15361 aggggaaatg accgtggcca gtcccttaag cataccaccg aagccgccat acatatcacg
    15421 caactgccca ccctgttgaa tcatgatcag aaacgggctt tgcccgcctg caagctgggt
    15481 aacgatgtcg gtaatttgtg ccggggtttg ccgcaatgcg ttattgaact gcttgacaga
    15541 ctgcgtagcg cgattggtct gcgtattatg cctgtccaat tgggacagta gcggattaag
    15601 ccgtgcaata tcgataccgc gctggcgcgc aagctcttcg taatactctc ggtttgcctt
    15661 accgcctgca atcttaacgg ctatatcgcg gcggatggca ttctccagag aagccaaaga
    15721 ccgttccgtc cgcttcgatg ccgccgacac taccgtcgat gatttctctg ctccgtcgcc
    15781 actatgtacc aatccgtcag aaatacgccg cccctgggaa gatgccacat cccccaaaga
    15841 cttgatggat tgttttgcct tttctacgcc gctgacgaca ccgccagttt cggcggtaat
    15901 ataaatcttg gtttcgttat tcatgttcgc ctgcccacat tgacaacact tcaagctcca
    15961 tcaggcggac tttctccaac agtgctttcc gtttcttcga cttgatattg ccgcattcca
    16021 taactgctgc gactgcggaa taatccaacc ccgtcgcacc cgacattccg atacgccact
    16081 gcgtcgatac tccaataaac agttgcaccg cctgccagtt gcacggccat acgccaaaag
    16141 tggtctcctt ttctgaaaaa tcgtccgccg aaaatccgaa tacattcaat tccgccgcgt
    16201 caggctgctt ctcataaagc gcacgcgcgg cggcaatcag tttccctcgc gggcattgaa
    16261 aacttcctca acatagccgt tgacgatggc aaacaccgcc atcggatagc tatccagcag
    16321 gatttcgaca ttctgccggt cgaatgcttc ttccaaatcc cagccttgaa cacaatctaa
    16381 gacggtatct gccgtccagc cgtctttatg cttttcggta aattctttca ttgccttgcg
    16441 gccgcgcgcc ttaaattcaa attcgacgtc cgcaggttct gcaccgggaa cagggatttt
    16501 tacggtatgt cggaaagttg catcaggctt caaagtgagt tttgccattt caatactcca
    16561 aataaataag gttgcccgag taactcggac aaccttgata tgccgataaa atcaataacg
    16621 gtttacttcg ccggaaatgg cgtaggacaa cgttaccgcc attacttggt tacgaaccaa
    16681 ttcgggggtt ttattcatgc tgggataacc gttatagcaa atcagcccac cacctttcaa
    16741 aaccactttc aaaggccact tgccgccttt atcgctgcat tttgcagccg ccttgtagcc
    16801 ggacaacgaa gtatcgtcag cgatcttaat cgacattgac atagctgatt tcgtggatgg
    16861 gatttgctgg tcaaaatcgt cctccaggaa accaaaatcc acatattgct gctcgccgcc
    16921 actggtcgaa aattctacaa tttgcgaaac ttgcacccaa tcggtaattt tctgaacagc
    16981 accaataccg ctgcctgccg gaaactcatc tgcattggaa gtatcaatgc cggtcagctt
    17041 gaatgtatcg gctttgacat cgccaatctg gaaaacgcgt tcattcaact ttccccagcc
    17101 gcttttaaac aaaaccaaat cgccgttggc aaacccgtgt cctgctaccg tcaggacgca
    17161 ttcggcagca ttagttgcca ccgtagcttt tttctccgcc gccaaagcgg tcgcaatgtg
    17221 aacggtcgca ccgttcggta atttcactgc catactttaa ctccaaatta aaggcaatct
    17281 gaaatcagac tgccgtatca aaataaattg cctgccatcc ttgctgataa tagacggtaa
    17341 cggcctcgcc gctttcgtcg gaatcgatat tcagcaaatc aggcaccaga ttttccaaat
    17401 caccaacacc caaatcggaa tgttcggcaa acaactgccc aatcaaagac agcatctctt
    17461 ccgccagttc gtccgcaccg gaagcagcct gcacgcaaac caacgtaacc agccgcaccg
    17521 tatgccggta ggtaggcgga aaatcaaacg tttcctgttc tgttcggcga cggtcaacgt
    17581 acaccacaac acacggcaac tgcgattgcg caggcgcgaa accacgcccg gaatacacgc
    17641 gctggaactt cgttttcagc acatctgtcg ccgcattgcg gatttcagta agtcggcttg
    17701 tcatgtatcg ccctcaattg cacaacaacc attccgcagc cgtcaaaatc ggtttccgcc
    17761 accgcataac gtttgccacg cacggtaaca accaccgact tcacgtcttc cggcaggtcg
    17821 tcttcagtaa cgatgatttg cgggtcggca ttggcaacgg caacgccaaa cccgctatcc
    17881 gttataaatt cacggtcaaa tatcgcgttt acctctttac cgccaatcat cacggtttca
    17941 ccgaaatcgg caggattggt aaacacgttc agcggctcgt taaacactgc cgtcctcgcc
    18001 gccctcaccg gatgcgttac cgctatcttc agcttcgccg ccatcggcaa caggggattc
    18061 ggcctctttg gcaggcgctt ctgccgccca accttcgcgg atatagacag ccgccgcaga
    18121 ttcgtccacc gaatattttt tccctgtggc aaacgtctgt tcaccatcga aaaaactacg
    18181 ggtcgggata attttgattt ttgccatttt taatacctca attaataagg tcgtctgaaa
    18241 ttcagacgac cttgggtttc acaatcaagc agccgcgatg tctttaatgg cggcaaagga
    18301 ttcgacatga cggacggcaa tatccacatc ttgcaacgtg gtgatgcgta ccgcgcccgt
    18361 agtagacttg gtgtacggat caacaatcac atccaaaacg ccccagtgcg caatcatcaa
    18421 atcagaccag ttaccaaaaa tcagcgggct gcatttgttg gccgccgtgc ctttggtcag
    18481 gttggacgga atttggtttg ataccgcgca acggtagccg ttcaacggcg ttgcgccgtc
    18541 ctgccagatg tagccggaca cgccgtcggc cttcagcttg gttttcagca gaccgcggac
    18601 gcgggcattg gtgatgtatg ccaaatcgcc gatgtcggca ttggcggcgg caatggcact
    18661 ttccaaagcg acgatatgct tccattcggg cgcaccgccg ttcgcaccga tttccaccgc
    18721 gccgatgccg gcggtattca ggatgccggt cggttcgttg ccggtacctt tgccgttgat
    18781 ggccgccaaa tcgataccca gcatcatcgc tttcaataat tcgctgcggg cgaactgttc
    18841 ggcagacagc gaggattgca aaatgaattt gcggctcaat tcagtattgg cggtaacggt
    18901 tttcggtttc aggctcattt gtccgaaagt ggcattcgat tcggtcgcgc tgccgttttc
    18961 atccacccat tgaacggtgt ttccggtcag gtgtttcgga atagtgatgt cgccgaccaa
    19021 gccgtccagt acggtggcgc ccaactgggc aacggcaagt cggttgcgca gcagttcgat
    19081 gaacaagtct tcgcggaagt cgttttcgat gacgttgccg ccgtttgccg cattgccttt
    19141 gctgtaagcg cgggcaatca aatcagtcgg cacaaagaag cctgccgctg cgcgaccatg
    19201 tcgtttttcc aactcttccg acacttcgcg ttccaagccc gctttgtccc atttgccggt
    19261 tgcggcggca gacatggcgc ggagaaggga aaattcacgc tgttctttat cagtcatgcc
    19321 gatttcaccg gcggtaacgg tcggcttcgt ctgcatgttt gccatgatgg cggcgcgtaa
    19381 ttgtgcttca ctgccgccct ctttaataac cttttcggct gcttcgatac cgccgtgggc
    19441 ggcgtaactg cgaccaatgg ccagcagttc ggaaacgcgc gcgcgttcgt tctgcatacc
    19501 gcgttcggcg gtgttgttgg tatcggttgc tgcggcggca gggattgcag cggcggaagt
    19561 ttccaccgta gtgggcgttt gatttttatc catgtttcga tttccttttt caggggttgg
    19621 gtttacaggg ttttcaataa atggttccac cgacctgcct acacctactg tcgggtctgc
    19681 aggaacggtt acaaaactga tttcatacgg catccagcgg gtaacgatgt aacggtagcc
    19741 ctcatcgtca gtatcgggat tgtccaatac catatcctcc actcggtagc cgacgctgat
    19801 atggcgtagg atgccgtctt gcacgtcttg gaatttttcc gttgccttcg taccgttgcc
    19861 aaaacgtacc aaggcacggc cgcgcttgtc ggcatcaatc caagcacgtt cgatgatgcc
    19921 gatttggtcg tcccagtcat gattgaacaa caccgcgccg ccgtcgttca ggcggcttaa
    19981 gtcaacagca ccctgcgcat gacttaatac ttcatcaccg aaccaacggc gtaccgattc
    20041 ttcgctggaa aacgccactt cgaccgtccg tttttcaaca tcaacacttt cgcgctgaaa
    20101 tacggcaaag cggctcattt gctgcatttg cgccttatca ggcttcattt tcttcattcg
    20161 ggttatcctc cgattccggt tctgccgccg atgcggccgg ttttacgtcg gcaatgattc
    20221 cttttcctgc caacatctgg ttttcctgtt cgatttgggt aataacatct tcaaaatcca
    20281 aacccatttc cgcgcaaata tcgcggcggg atttgactgc cagcgccacc gcctctttat
    20341 gcgcattaat atctttcagc gggtcaaccc acgaccagcg gcgcccctgc cagttgcagg
    20401 ccttgaactt gtccagcttg ccggcaggca gcgatttgcc ggacggcatc ttgattgcgc
    20461 ccattagcaa cgccgcctca atccagcgat cgaatacgtc atacaagaac gcgtcggcaa
    20521 accagttttg caacgtcatc catgtgtcgc gttcctccag cgtcccgctg cggatactgg
    20581 aaaagttcac gccctcaagg tcgttcgcca agctgtgata agccacgttc aaaccgctgg
    20641 cgataccgcg caggctggct ttgacgaatg cgtcgtaatt ggcgtgcggg taatccggat
    20701 caaacggcgt aaagtcgtaa ccctgcggca gttcgtgaaa cgtacccggc tcgaccgaat
    20761 cgattaaatc gatgctgccg cgcccgttat cgacctcttg cccgtcaatc ggcggcatga
    20821 agttgtcggc gtcttccgtc tgtttgaaaa agcccatttt cgatgcaccg acacgggcag
    20881 cgataatggc cgcttcctga tagcccgaca ggttttgcag gccgatgatg gccgaagcca
    20941 cccacggaaa gccgcgccgc tgctctgggc ggtcatgcag gaaaatatgg ctgatttgct
    21001 ctgccggcac ccgttcgcgt aaattgcccg tattcgtctg tccgtatgat tcgcccggat
    21061 gtgccgtccg caaccagtac gctacaggac gggaatagct gtttaactca acacccatgc
    21121 gcacggcgtt acgcccgttt tgctgcggaa cgttgtatcc cgtatccaaa cggtcaatat
    21181 ccagcacctg caacgcatag ccgtaatcat tgtcaaaccc tgaaatatga cgaatcagca
    21241 cttcgccgtc ccgcgccacg ctgcgaatca gcagccgttg caggtcggta aaagacatct
    21301 ggccggtaac gtcgcacacg ccgcgccgcg cccagcggga aaacgctgct tcaatggcct
    21361 tgttcgccaa ggcatcgggc ttgtcggcgt tatccagcaa aacacgcatt tgcagggcaa
    21421 aaccgtcgcg cccgataacg ttgctttcga ccatattcaa aaacttgcgc atgtagtcgt
    21481 tgtcgcgtgc aaggctgcgg gcgcgagtgc gcaggcggtc aaggtctgac cgcgccaaag
    21541 cgtccgccga ccagttttgc ggctgccacg aagccagcga cccgaccgga cgcgcccctg
    21601 caaagttgcg gcgggctgtt ttcgggacgg cttcccgcct gccgaacaaa cgcgcaaaaa
    21661 aaccgcgctt tttcggcgcg gcatttgatt gttttgccat agctcatcct aaaatcgcgt
    21721 gatgatacgg cctgaacggc gcggggaaac acccgccgcc gcttccagcc gcttgatttc
    21781 ctgctgccag aaccgtatct gcttcaacaa atcggcaagg ctggaaaact ccatttcgcg
    21841 gtctttgatt ttgtaccgct tggtcatgcc cctgcctgcc gcatgttcct tgtaggcttt
    21901 tcgaaggctg ttcagaatct ctcgcgcttc ttcaagttct accgcatagt catgtccgct
    21961 catcgccgta tcccttcaac agttcggaaa caccgcacat tgccgcaagc agactgtctt
    22021 cagattcaaa aaatgcatga tagagaattt cttccagtac atgctgcatc aggtcatcca
    22081 attcgcattt ttccagaccg tccattaact ccgcatattc ttcgggttcc aacagatgca
    22141 ttacggcaca agaatcaagc tgccgctgca aataccatcg cgcctttttc aaatcctccg
    22201 cgccgttctt ttcccgatga cgccagacat acttaaacgc attacccatg cagaaattca
    22261 gccgttcggt aaattcaatg cattccacgg cgcggcttcg atagtgcggc ggggtgatgt
    22321 tgtcttgctt ttccattttc agacggcctc ttttgcataa aatttactga cgccttgctc
    22381 aaaacgctct tccaccaagc cttcctcaat cagcgtatca atatcgcggc gggttaaaaa
    22441 atggcacaga gcatggcaca atggcacaaa tttatggcac aaccaaaaat ccaaactaca
    22501 aaacgcgccc gacaactctg ccgcacgcgt tttgaaaaca tcatacatat gtcagactca
    22561 atcgtcaaac ttcttcaccg ccgcgatacc tccaaccagc gctgcggaat cgtaaaacct
    22621 cattgcccag ggcatccatt tccggcaatc cgtccgccgc ttgccagcca gccggcttaa
    22681 aaatccagtt ttgacacgat acgtcgccat ctttattttt cgtccgccac cagcgccgcg
    22741 cccgcggcat cttctcagca atgtgttgga gaaactttgt tttaccagtt tcccgctcgc
    22801 cgttttgcct gcaccactct ttgtaaacca accaaaggtc gtctgtaatg caacagcaaa
    22861 acggcaggtc tttaatacca ccgccagccc actccgaata aaaggtttgc caagcatatc
    22921 ggccatagga aatgacgttt tgtttcgcgg cagtcatcgg cggcggcgtg tttggatcga
    22981 atcttacagg ctcttccagt ttgattacct cgtatccttt ttcgttttct gctccctgtt
    23041 gcccgtaagt cagataaaaa ttccaacaca gcaggaaact gtaaaacaaa cggacaccat
    23101 cgttgccgat acagtctaaa acttcatcgc gcaatttttt gtccaacttt ttctcaggcc
    23161 atacaacgaa ataacgccgg tcgttttcct caattttgaa aggatgagat tcattacgca
    23221 aaaacacaca attcatatgg tttgcttctt cgtaagcatc ctggaatttc cgctcgacgc
    23281 gcatcgtctt gccggtaatc atatgttttt ggctgcctgt tttattgtat ttttgctgat
    23341 ttgtgtaaac ctcttcaaaa ataccgaaca ttttgcctga tcggtttgcc gtatagttgc
    23401 tttccaagtc ctcttgacca tatgttgcgc cgtattcgcc gtacatcggc ttcacgattt
    23461 cctcgaaaaa gaaagattta cccgcaccgt gtatatgacc gtgcatgaca acggcggtcg
    23521 tcatcttcgc gcctacgttt tgtaacggat aagccagcca attcaaaatg tattcgacct
    23581 gttggtaatc cccattacat aagtgattaa tcaaattcag aatcggcttg atttcaggga
    23641 ataatctata caattcgtag tttgtttcgg gcatatcctc tttgggaatc gggaatttcg
    23701 gttcaatcgg catgcctcgg aagatgttga tatagtcgtc agacaacacc cgaccaggct
    23761 caaagaccaa tcggtcgaac cgttttacaa ttcggctcgg gctattgacc caaattttaa
    23821 aaccatcagg cgtcatcgac agacgagccg ccttttcagg gacaacgcgc catagtttgt
    23881 tgtcccaaat cgatgccgaa ccatcaagat aaatgaaacg ctccatcata tcttgcgtgt
    23941 catcatcttt taccgcctga atcaatgcgt agtctttttt cagacggttg atttcgtaca
    24001 tagtcagcac cggcgcacgg ccccattcat accaagcatc gacaacgtct ttgccgaaat
    24061 gaacagtcat tgcctttcgg gtatatgtaa cccctgtttt tctgttcacg ccgtggtctt
    24121 taccttcaac cagcccaaat tctgatttca gcttttgcaa tttggccaaa tattcgtcat
    24181 ccacatcccc cgcaccccct tgattgcctg ttgcttcgag agattcatgc aactgctcag
    24241 attccggctc catatcttga atgggtgcgg gagagttttc agacggcatt tccgcttccg
    24301 gcacatactc aaccaaccaa tccgccgcgc ccatccagct caacacttcg gaagggtcgc
    24361 agatgcgccc gccgtctgca atcgcatcgg caatatcgaa accatgaggc catatccctg
    24421 gagcaggaat attgaccaac caaacacggc aattctgctt tgtcagtacc tcagcaatac
    24481 caagcatcgc cttcattccg ccctgctcat tgcgcggcag aaacggtttg gattcagggt
    24541 caacaccatc atcgcgatct ttctttgtta gcttttggcg cagcgaatcg caatcaggcc
    24601 acaagacgac atcacgatca acgaccgccg accaatccga cttatcccag ttattacaac
    24661 cgccatgcca cgtcaggacg gcatagttat aaccctgagc atctgccgcg ttcttacatt
    24721 tctccccctc gacaaccaaa accggtaatg atgggtcagc aaccaaagaa tcaagaccgt
    24781 acaatgggcg cgggttatcc caacaacgcc aacgccacat cttttcgcct gttttcttat
    24841 gctcgcaaaa cgtataaggc agatcgattt ttccgccgtc tgattttcta aatcgggcaa
    24901 caccgcccaa aaccgcgctg gagctatcgc ggaaaacaga tttaaaaatc aggtcgtctg
    24961 attttctaaa tccattccca aagctcatag aattcagcgc atattcaggc acaggaacga
    25021 ttggcttcca caaatcacgc tcctcctcct ttactggagc aggaggaggt aacagcttcg
    25081 gagccttatc taccaaatcc ccatgcgcca acccaagcaa ggaggcaact ttgtctctag
    25141 cctcgttaaa actatacccg caaacatcca tcaacaaatc aaacggactg ccgccttccg
    25201 gcttgcattg attgcaaatc caaacaccac tcccgcgact tgaaccgcta ccgtccgtaa
    25261 acctgaatcg gtcggagccg ccgcatgacg gacaggggtg atgtttttta tctaaaattt
    25321 cggacggtat gccgcacgct tctaaaacct cacgccaccg gtcatgcgcg gcggcattaa
    25381 tttcggcttt tgttgcatat tttttattca ttttcagtca tcctttacgt tttttaggcg
    25441 taaaaaatac ccacccacgc acacaagaat cactctggag agggcgggct aaacactgat
    25501 tgcgcgatta atcagtacag ggtaattaaa tctgtaacat cccttgaggg ataaataacg
    25561 gctcagtcca caagccgatg tgcagtatcg gacaggctgc tttcgccaac acgaggcttt
    25621 gtgcgatgct tcgcgcctta gctgcctcct ctttttcgcg ctcggcgtcc atcaatgccg
    25681 ccatgactgc ctgcttttgc tcaaattctt tttcacggcg cttgtacagc aaatcttgct
    25741 gatagacgtt gtggcatcgg cggcatcggg gcgcgtattt ttgcagcccg gtttttctgt
    25801 caaagccgtt tttcggaaac gccgttatcg gcttaatctc tccgcactcc ttacacgttt
    25861 ttgttcgatt catcgagaac tccaatatta aaaattatcg tcatcaatgc ggcttcccca
    25921 gcccacagcg agttttccac gacaggcttt ttttatttgg gttggtcgtc tggtttcttt
    25981 gagttcaaaa acaggtcggg atacttaagt tttattcgtg caggtatccc gcgcttcgtc
    26041 caattgaaaa cgcattgagg gctattccct gttattcgac caacttccgc gtaactgccg
    26101 attgattgca acaggcgttt gtcttcattg actcttttat ccataaataa accaaatgtt
    26161 taaatctaat gctaatatta aacactatgt ttagataaaa atcaagtctt gtgtaacaac
    26221 attttgttta aatatgggag aataattaag ccaaccgcga ataggattaa aaatgacaat
    26281 gcacgagaca actgacagac tttttgagat agccaaagag cagggagttt taaagccggc
    26341 tgacatagca gagcgtctga atatcagcca acaggctttg aaaaactggg aaagtcgtgg
    26401 catagcggca aaggcgctgc ctgaagtagc aaaagcattc ggtgtatctg aaacatggct
    26461 gagaacaggt gaaggcagcc gaaccgcgcc cgtccttatt gaccccgacc taccccacga
    26521 agtcaaagac atccaccgcc cgatgacgtg gagcagcaac gacccgctgc ccgacgatga
    26581 ttatgttttc gtcccctacc tcaaagagag ctgcttcaaa ggcggagtag gcacgtatga
    26641 aatccccgat tacaacggct accgcctgcc gttcggcaaa tccacgctta aacgcaaagg
    26701 catcaatccc gacaacgtgt tttgctgcac cctgaccggc gacagtatgg aggaaaaaat
    26761 cgcagaagac gcggcaattg ccgtagatac gggcgaaacc gccatacgcg acggcaaaat
    26821 ctacgccttc gcccaggacg gtatgttccg cgtgaagtac ctgatacggc agcccggcaa
    26881 cagcgttctg atacgcagcc acaacagcgg tttctatggc gacgaaaacg cccccttgga
    26941 cagcctgacc gttatcggca gggtattttg gtggagcgtg ctggattgaa aaatgttgct
    27001 attacgacga gataatattg atagggcttt caagattgtc aaaaataggc gttttgattc
    27061 cccttggtgg cctggtgagt acgatgccgg tatgaatttc cttggcgtac aaggagagtt
    27121 gaaggttcac gagctgcatc acagaacagc aaccctgtgc tttgagtggc ttggcgaagt
    27181 atctgcgccg cgcagaaaag agaactacaa agacctcaag ccaaatgtat tgtatgactt
    27241 tgatggttcc ggtaagcatt ttgccaaccc tgacgcaagg tatctattgc ccgtcggttc
    27301 aagcggctta atcttaaaac atatccaaat cgatgacgaa gacactctgt tgcggctatg
    27361 gtgcgcacga aatatcccaa tgccacaccg gctatctaaa atcccgatgc ttcggcagta
    27421 ttatctaagc aaggcatggc acgaaattta tgctatcaac caacacctaa ggaaaacgaa
    27481 gctgatagtt gatgtggcat acggccccac agattaaaca acccgcccgc attatgcggg
    27541 cttttttcat gccccgccga acctgaaaac aacacaaaac cgacaaagcc gccttaatag
    27601 gcggtttttt tgcgcctgcg aaatctcaaa aataaattct tttaataatc aaaatgttta
    27661 taaatcttaa acagattgtt gcatattatt aaacgctatg tttaaataca cccatcgaaa
    27721 caaacaacag ccacatggag taccgacatg gaaaccatca ccatccctaa agaaaatttc
    27781 gacgctttgc taaatctcgc aagaaccgcc gtcgccctga acgaaaattt tattccaaaa
    27841 ataaattacg gagcatccac cataccagca gccggctttg ccgcacttaa cgagtttgga
    27901 atagctcgct ccaccgtgga atctttggaa attctcaaaa ttaaataacc tcctcggtat
    27961 tgtcatcccg tgataccggc aacctaacta acccctcttt aaaggaaaat caaaaatgga
    28021 aacccaagaa aagaaatttg ttcctgcctc caagcaaata ccgaccgtaa atagcggctg
    28081 gttagaccgt gaattaggcg aagccatgag tgaagcggtg cgtgcctgcc ttgctcacgg
    28141 taaacagtca gaaattactg tcaagctcaa aatccaaccc caaaacatcc aaagcggaac
    28201 ggtaaaaatc agccacgatg tagcaaccaa actgcccaaa gaaaaacgcg aaggcggcat
    28261 cgtctttgct acacctgacg gcaacatcca agccgacgat ccggcacaag gaaaattgaa
    28321 actcaaacaa gttcccaata cgtcaagcac gttgaaaatg gtcagatcca actaactcaa
    28381 acccaaaagg aaatctaaaa tggaaaccca agaaaacatg attaaaaccg ccttacaagc
    28441 agctcaaaaa cctttttttg agtttgcacc gaacaatact ctgcttgtat tcacaccaga
    28501 ccaagacggt ggctggagat acaaatcaca ccccgaattg atgcaaaacc cgtaccgcaa
    28561 gtgcggcaaa ttcctcatgc acgataccgc cagtcttatt aagtttgtac aaaaacacaa
    28621 acaggacggc acacaaatct acattgatgc cgatttcaaa tcagggcgta ttgatgtcac
    28681 cgccgtcatc aacggccata cgcaacaagc tcctggctgg ctcgattttt atgccgtata
    28741 caccccgcaa cacactacat cggcatccaa ctggctgaac aacaatgcgc accgcatgaa
    28801 tcagatggag ttttcccatt tcctgaccaa caatgcccgc aacatcgtat ccaaaaatcc
    28861 cggtaacgaa aattccgttt acccgaccgc cgccgaagta ttggatttcg cgctcaatct
    28921 cgagtacacc gaaaaaacca ccttcaaaca aggctatcgt gaacaggacg gcagaatcaa
    28981 ctttaccttc caatccgaag actcagggca aacagagaaa aacctcaaaa tgtttgaacg
    29041 tttcggcatc gagttcaccc cgcatcaagg cggtgcatcc tactttgttg aagccctgtt
    29101 gaaattccgc atcgacaaaa acagcggcgc actcgtcctg tggtacgaat tgcagcaaat
    29161 cgatgctgta atcgaacaag cggcaaaaga catttccgaa gccgtacaaa aagccttccc
    29221 tgaaatcgac atctatttcg gcataatcgc ctaaaaaaaa aggtcgtctg aaattgtgaa
    29281 ccttcagacg atctccacaa aaacccaact ccgaaagacc ccaaaatgac catcacagaa
    29341 gaatactcca tcgacatccg cgtaaccgca gaacagggga aaaacgacta cggctacccc
    29401 accgaacgct acggatgcga catcatcaac acagacgggg agctgcttgt cggcatagag
    29461 ccagagtaca aaaccccctt tgccgccgtc agaaaggcgc tcatctgtct ggcaaaagac
    29521 aacctcaaaa acgctgcctg atattaagcc gttaccccca ataacgagga atcaaaatga
    29581 aatacttgat ccgcaccgcc ttactcgcag tcgtagccgc cggcatctac gcctgccaac
    29641 cgcaatcaga agccgcagtg caagtcaagg ctgaaaacag cctgaccgct atgcgcttag
    29701 ccgtcgccga caaacaggca gagattgacg ggttgaacgc ccaaatcgac gccgaaatca
    29761 gacaacgcga agccgaagaa ttgaaagact accgatggat acacggcgac gcggaagtgc
    29821 cggagctgga aaaatgaact ttcaggaaga aaacgagaac atcaagaatg acatagagat
    29881 taatctcttg cattccgctg aagccgacag cgtggaggca atgatggact tggcggttta
    29941 cgggctggcg gcgatggttg ccaaacacaa caaaacgcgc ggcgagcagc ttgtgttaca
    30001 ggcgattgcc ggtcatatgc ggaagctttt ggccgcgctt cccgaaaccg agtcattggt
    30061 gcagaccggg aaggtttacc gccgacttga agatttgatt tttaaaacgt atttgccgga
    30121 gcagtaaaga tgaacacgaa tcaagatacg attccatttg gcggcaacct tgtgatttgc
    30181 tgttcgacgg gaaacggcgg ggacgggcgg ttttcttgtc tgattaccga tcagataccg
    30241 gatttaaatc ttgtcagaag cgggcaggcg ttcccgatgt tcatttatga gtacgaaact
    30301 agagaaaaaa ggaaagcctg atggacaccc tattaaaaat catcatcgcg ctgtcatttt
    30361 ccggcgctga ggcattggcg gtatggcttt tcatcacggc cgccgatgcc gtattacgcc
    30421 gcttcccgaa accgagtcat tacaggagag taaaaaaatg aacatcaacg aactgggcgc
    30481 aaggatagac cgcccgacca tccgcgaact gattgcctac gcaacctgcc gcaaccgccc
    30541 catttcaaac tcgacactgc tgcgtatgga aaaagacgga cggataccgt gccgtctgaa
    30601 aaccccactc acatcccccg tatgggacac ccgcgaagtt ttggaagccc tggggttaca
    30661 gcaataaaaa aacgcccgat tagggcgttt tcacattcag acggcttttg tattccctac
    30721 tgcatcaaac cgacgacagg ttgcggattt cgggcagcat cgggcggatt tttgccgcgt
    30781 gttccgcgtc ggcgtgtgcg tttaaggctt cgagggcgtt tgcggcggct ttgaggcggc
    30841 tgcgtgtttc cgcccagacc gtccacatcg ttaccgcctg tttgcagccg agctgcttca
    30901 gcggcaggga aacgtctctg cccatttgga tggcccacgc gccgtatctg acggcaacgg
    30961 cgaggtcgta cagggcgttg ccgctgatgg gcagggcagg ttgcggtgcg ggtaacggtt
    31021 cgcggtcgag gacttcgccg tacagcacgc cgttttcaac tgccacgcgg ctcatcacgc
    31081 ttaaaacttc ggggaactgt tcggcaggta cttctttgta gctgcatccg aacttgcttt
    31141 tgacggcaga ccaaagggta atggcgatac gcgcctgcgc ttctttgggt gcggatttgg
    31201 tcagggcgtt gtgcagtttt ttgacggctt cgatttgttc gccggtcaag ccgtccggaa
    31261 gggcgcgggt gggtttgggg gtaactgttt ttatgccgtc tgaaattttg ccgttaagta
    31321 aaatttcaat ctgctcatcg caccaaaccg caaatttcgg attaagccaa cgggcaaagt
    31381 gaatagcgag tttgggatgc agccatgtgc cttgctcact gccaccacgc ttcacgataa
    31441 ctatttgatt tgcttccgtt aggatttttc tcctaacgct taaattctca gcaagtgcag
    31501 agatatattg ttgagtttgt tcacttttta ggtagtcttt aggtaacttg ccaaagtgag
    31561 atgcaatggc ggttgcattt aaaaaaccgt cttgacggaa agatacaggg gtgttaccaa
    31621 aattgagaac agatacgttc atgatagttt cctagtttag tttcgaaaga cccaaatggg
    31681 tggtcgggag gttcgaaaac ctactagaaa aggccggcgt tattcccctt gcgggtattg
    31741 tattccgcac cctcccgacc ataggaaact agttcggata tatcgaaaca aacaaccaaa
    31801 caagaaaact tatggacgta aaaaattcac gctgacgggg tgaatgccgt tctagtagag
    31861 gttttcgacg cctcgtgttt cgtaatatat ccaatctttc tattttctgc aagcataaaa
    31921 aagccgccat gtggcggata gggtcgcggt cttcaacagc atgtaggatt taggaatgcc
    31981 caaattgggc gcaggggtgt tgaaaacacg caaacagacg cgccgccagc cttacgggta
    32041 ggcgcacccc cacataggag taaatcgatt tgatacgtat agacgtaaaa aattccactc
    32101 tatcgtgttg gatatacgct gtttgtcagg tgttttcaag caccgtggga aatattatat
    32161 agagttatgg aaatgtgtca agagaattag cccaaatggg cggacgcgcg gttaagaacc
    32221 cacataggag ggcggactta ttcccctttc gggtcttgta ttcgtcgccc acgcggtcat
    32281 agaaacttcc tgctatcgaa acaaacaaca aggaaagaaa actatagaca tgaaaaaatc
    32341 acattgacgg agtgattgcc gctgtagtgt ggtttctgac gccacgaaca ggaatataaa
    32401 acaaaacccc tgcacatgca aggggtttcc caaaaaaccg taggcggcaa actgaaaggc
    32461 cgtctgaatt tcagacggcc tatgttgcgg cggatgttaa gctattaagc tatttggttt
    32521 tcagaggctt tttcttccat tttcgggcta cggcttcaaa ttcttgaaag gccgtcggtg
    32581 cgctcctgat acggcgtatt tcaaaaatga agctgcttag gttgtcccag tcacgtaaca
    32641 gcatggagta ttcgaaatct ttatacattt tctcgtgcag tgctccgccc aatacgcccg
    32701 cacagacaaa ttcgcgctgg tttaaaactg tcagtatggc ttcacggtct ttcttcttgt
    32761 ccggggtatc cgatgtatag gtggcgagta tgcatccgtc tgtttttgcc agcccgttta
    32821 ctatggttat ggcttcttga agggcggcat tgttacgttc ggccatgatc atgtcgatgg
    32881 tggcgcgctt tttggcgttt tctgtattcc tcatgatgcc gtaagcggca acaaaaacgc
    32941 cgataacagt caatatcggc gttgctatct gtattaggtt gtcagtcatt gccgtcccag
    33001 ccgtctgaaa ggcggaaatc acggctttcc gaataaatat gtcccattgt catcccctta
    33061 agctgatgtt gaaaataaat ccttgcgtcg gaatatacgg cattgcttga ctattttcaa
    33121 gattctgtac ctcgtgaacc ggactataca aaaaaaccgc cttcgtgtaa agcggttctt
    33181 aaatcgcccg ttaaggcgga cacaacgata gccaaactgg aacaggaggc ggcaaaggcg
    33241 ggtttgtcca aaacagcctt gattgaaagg ctgattgggg atttgtaggc gtttgcagat
    33301 acgacaaggg gcgcattccg cgccccatca cacgcacgga cggcttgtca tcgcctgtcg
    33361 cccgtgcgcg gctgcccata tttcagaaca gtcttgcaag cccctttaag ggaacggttt
    33421 tattctagta cagtttgaat gccttggcaa cggctgtttt aatcgcctga aaatcctctt
    33481 cactgattat tggaatgcag cggtcgcgcc ctttgggttt gtatcggtct aatcgtgcca
    33541 atccgactgt tgccgtcatg tcgcattttg cccaacattt ggatgtgcgg cttgtccggt
    33601 aagggggttc cactcatttt gtggtggtag tccgccaaag ggacaggttc tgtgctgctt
    33661 aagggtacga ccgttaccag tttgccgttg tgcctgtttc gcgctatgac gacgacaggg
    33721 cgtttcttga ccatttccgg ttcttcataa ccgcgaaagt cgcacatgat aaccgaacgt
    33781 tcccttggtt ggaattttaa aggcattagc cgctcctgac gatgacaggc tgctattata
    33841 gcagttctta cacaaaaaac cgccttcgtg taaagcggtt gcaaaaaagc cttccaataa
    33901 aaatgcggaa acggtttttt atttgcgttt ccgcataata caaacacaca cacacaaaaa
    33961 aatcattttc cgtttttggc aagcctcaaa acatcattcc cccaccgttc cagcgcatcc
    34021 ttacgctcct cccaaagctc cgagcggttg taagccgttt gcgtcctcgt ccccaacgaa
    34081 tgggcaagca gcttttccgc cacatcatta tccaccttca gaacctcgcg caaataagta
    34141 cgcgcaagcg agcgcaaacc gtgcgccgtc gtatccagcc ccgcccgctg catcgccacg
    34201 cgcggacttt ccttattgat atgcccttga aaattcacac tttcaaacac aaaccgcccg
    34261 ttcacattca acgcccgcgc ctgatccaac acccactgca tcgcccgcga cagcggcaca
    34321 tcatgccccc gccgctcctt tttccgttcg gcggggatac gccaaacctc cccgtccaac
    34381 tccgaccact ccatcaacgc cgcctcctga atccgcgtca ttgtcaacag cagccaatag
    34441 atacaaagcc gcgttacagg atggatacgc accctgcccg cataaaccgc aaattcattg
    34501 cgctgctcca aaaaatcaat caggcgcggc aattcagacg gactcaacgc tgccatattc
    34561 cccgttttcg cccgttcaaa cacacccgaa ccgatttgcg cgacagggtt gatttccatc
    34621 attcccgaac cgaccgcaaa cgcaaacacc atcttcagac tgtttttcgt tttgcgcaac
    34681 gtatcaacga taccgcgcgc ctccatcaca cggaggcagc cgaccacatc cgccgtcctg
    34741 acctggcgaa tatcaagatt gccgatagcc ggaaaaaccc accgttcaaa attccgcata
    34801 acctgtccgg catacttttc agaccgcccc ttcgaccaac gcacaaacca atcacgcgtc
    34861 accttctcaa aagcaaaatc cgcccgcacc ttcttattga cgacattttc cccgtgcgcc
    34921 cgttttcggc gcacctcctc ccgccattcc cgcgcatcgg ccagcgaaaa atcaggatac
    34981 cgccccagcg aaattgtctg ctgccttcca tcctgcacaa acgacagctt ccaactccgc
    35041 ccgcccgtcg ggtagaccca caaagccagc ccg
//
LOCUS       DAXIFS010000004        32594 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.004, whole genome shotgun sequence.
ACCESSION   DAXIFS010000004 DAXIFS010000000
VERSION     DAXIFS010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 32594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32594
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.004"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..540)
                     /locus_tag="ACFOCA_000158"
     CDS             complement(<1..540)
                     /locus_tag="ACFOCA_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6986938.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEQTSFNNLEPMTGFE
                     HTVTFDFQGIKMVIPYGYLARYTQDNATKWLSDTPGQDAYSINLIEISVYYKKTDQGW
                     VLEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPE
                     YEAYEDKRHIPENPYFHEFY"
     gene            complement(952..1227)
                     /locus_tag="ACFOCA_000159"
     CDS             complement(952..1227)
                     /locus_tag="ACFOCA_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6986939.1"
                     /translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTTGKGAKYTRV
                     FKPVAMRIVAGGMDKGTALRQEIAVKKLTAAQKRQLWEQAEKMPSET"
     gene            complement(1224..2507)
                     /locus_tag="ACFOCA_000160"
     CDS             complement(1224..2507)
                     /locus_tag="ACFOCA_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6986940.1"
                     /translation="MTVSKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
                     EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRLPVLGRRRGWMLLTQAGLLAALAAYA
                     FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRVTAL
                     IPGSLSLVLADRMPWSEVFVITSLFMLPGLLMTLFLAREPVLPPAVPKTLKQTVVEPF
                     KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
                     AVAAGILGGVWMLKIGVNKALWLFGAVQAVTVLGFVWLAGFGPFDTVGTGERLMLAAV
                     IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
                     YVPFFQLCFALALPGMLLLLKVAPWNGEKTQDAGR"
     gene            complement(2511..2636)
                     /locus_tag="ACFOCA_000161"
     CDS             complement(2511..2636)
                     /locus_tag="ACFOCA_000161"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986941.1"
                     /translation="MPSEHSFRRHFAFERQNGGAGAVFFSGWAIFATIGFYFLAV"
     gene            complement(2661..4079)
                     /gene="glnA"
                     /locus_tag="ACFOCA_000162"
     CDS             complement(2661..4079)
                     /gene="glnA"
                     /locus_tag="ACFOCA_000162"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFC6986942.1"
                     /translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
                     EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQ
                     GYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESG
                     AWASGLHMDGQNTGHRPAVKGGYAPVAPIDCGQDLRSAMVNILEGLGIEVEVHHSEVG
                     TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
                     SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
                     KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
                     GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
                     EEDVRRIRMAPHPLEFEMYYSL"
     gene            complement(4353..4730)
                     /locus_tag="ACFOCA_000163"
     CDS             complement(4353..4730)
                     /locus_tag="ACFOCA_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6986943.1"
                     /translation="MKKMLCLAVFALGLATPAVAADWVLVDSNTATFGDADSRTDNSA
                     WFETRFAKPQKYGNGKFFNTAKTLEEMDCSGKRFRILTATWYSKSGNSIASYTPSYAE
                     WNYVIPGTLGEAQYKFVCNGYPR"
     gene            4901..5710
                     /gene="aroE"
                     /locus_tag="ACFOCA_000164"
     CDS             4901..5710
                     /gene="aroE"
                     /locus_tag="ACFOCA_000164"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFC6986944.1"
                     /translation="MTALPRYSVFGNPVAHSKSPQIHQQFALQEGVDIEYERICADIG
                     GFAQAVSTFFETGGCGANVTVPFKQEAFHLADEHSERALAAGAVNTLIPLKNGKLRGD
                     NTDGIGLTNDITQVKNIAIEGKTILLLGAGGAVRGVIPVLKEHRPARIVIANRTRAKA
                     EELAQLFGIEAVPMADVNGGFDIIINGTSGGLNGQIPDIPPDIFQNCALAYDMVYGCA
                     AKPFLDFARQSGAKKTADGLGMLVGQAAASYALWRGFTPDIRPVIEYMKAM"
     gene            5712..6413
                     /gene="mtgA"
                     /locus_tag="ACFOCA_000165"
     CDS             5712..6413
                     /gene="mtgA"
                     /locus_tag="ACFOCA_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HFC6986945.1"
                     /translation="MFRIVKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
                     MKQFEQEGRDVALDYRWVPYNRISVNLKKALIASEDAHFAGHGGFDWGGIQNAIRRNR
                     NSGKVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
                     EWHYGVFGAEAASRYFYQIPAAKLTKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
                     LRRMGSAELPESDTD"
     gene            complement(6616..6691)
                     /locus_tag="ACFOCA_000166"
     tRNA            complement(6616..6691)
                     /locus_tag="ACFOCA_000166"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6656..6658),aa:Phe,seq:gaa)
     gene            complement(6882..7616)
                     /gene="lptB"
                     /locus_tag="ACFOCA_000167"
     CDS             complement(6882..7616)
                     /gene="lptB"
                     /locus_tag="ACFOCA_000167"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFC6986946.1"
                     /translation="MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGA
                     GKTTSFYMIVGLIAADAGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQN
                     IRAILEISTKDKSRIDGEVEKLLADLNIERLRNNPAPSLSGGERRRVEIARVLAMKPH
                     FILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTV
                     LASGKPDDLVGNEQVRSVYLGKNFKY"
     gene            complement(7690..8220)
                     /gene="lptA"
                     /locus_tag="ACFOCA_000168"
     CDS             complement(7690..8220)
                     /gene="lptA"
                     /locus_tag="ACFOCA_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HFC6986947.1"
                     /translation="MIQKICKLFVLIAFFSASPAFALQSDSRQPIQIEADQGSLDQAN
                     QSTTFSGNVVIRQGTLNISAARVNVTRGGKGGESVRAEGSPVRFSQTLDGGKGTVRGQ
                     ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
                     GRVSVVIQPSSTQKSE"
     gene            complement(8201..8782)
                     /gene="lptC"
                     /locus_tag="ACFOCA_000169"
     CDS             complement(8201..8782)
                     /gene="lptC"
                     /locus_tag="ACFOCA_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HFC6986948.1"
                     /translation="MKIRWRYGIAFPLILAVALGGLSAWLGRISEVEIEEVRLNPDEP
                     QYTMDGLDGRRFDEQGYLKEHLSAKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
                     EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVEAEKLHVDTESQYAQTDTPVSFQYGA
                     SHGQAGGMTYDHKTGMLNFSSKVKATIYDTKDM"
     gene            complement(8779..9315)
                     /locus_tag="ACFOCA_000170"
     CDS             complement(8779..9315)
                     /locus_tag="ACFOCA_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KdsC family phosphatase"
                     /protein_id="HFC6986949.1"
                     /translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
                     TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQV
                     GVEEAECAFVGDDVVDLPVMVRCGLPVAVPDAHWFTLQHAAYIAKRPGGAGAVREVCD
                     LIMQAQGTLGAALNEYIK"
     gene            complement(9380..10354)
                     /locus_tag="ACFOCA_000171"
     CDS             complement(9380..10354)
                     /locus_tag="ACFOCA_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFC6986950.1"
                     /translation="MAENGKYLDWAREVLHTEEEGLREIATELDENFVLAADALLHCK
                     GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
                     ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
                     AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
                     PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
                     KTISAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARIV"
     gene            10451..11506
                     /gene="tal"
                     /locus_tag="ACFOCA_000172"
     CDS             10451..11506
                     /gene="tal"
                     /locus_tag="ACFOCA_000172"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFC6986951.1"
                     /translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
                     AIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTG
                     FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVN
                     LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIHVVASFFISRVDGALDTTLPDHLK
                     GKIAIALAKAAYQDWAQYFGSPEFAALETQGANRVQLLWASTGVKNPAYPDTLYVDSL
                     IGAHTVNTVPDATLKAFIDHGTAKATLTEGADEAQAQLAETAALGIDVETLAARLQED
                     GLKQFEEAFEKLLAPLV"
     gene            11521..11655
                     /locus_tag="ACFOCA_000173"
     CDS             11521..11655
                     /locus_tag="ACFOCA_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986952.1"
                     /translation="MPSERLSDGIARLTGHSAAYQGFTLKILMGKKLMHDITHQHKRK
                     "
     gene            11660..11950
                     /locus_tag="ACFOCA_000174"
     CDS             11660..11950
                     /locus_tag="ACFOCA_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986953.1"
                     /translation="MAKALEIISPNEIYSDLIFKDPVPPHTIYTELMKLVSRNASNER
                     IADRAFDFFSSGLMDGSATEEQYNALYDLTLLEEPGMELNKDEIMALINSLK"
     gene            11967..12854
                     /gene="gluQRS"
                     /locus_tag="ACFOCA_000175"
     CDS             11967..12854
                     /gene="gluQRS"
                     /locus_tag="ACFOCA_000175"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HFC6986954.1"
                     /translation="MYTGRFAPSPTGLLHIGSLLTAAASYADARSNGGKWLVRMEDLD
                     PPREMPGAASHILHTLEAFGFEWDGEVAYQSRRYALYEETLCRLQTAGLVYPCHCSRK
                     DWQAAAVHGADGFVYNGRCRNPQQRPALQGKQPAWRIRVPDRDIGFSDGIVGGYAQNL
                     ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPT
                     PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLKLPEAPETDRPAELLD
                     WAVAHWDMGKVPKHAITTP"
     gene            complement(12924..13934)
                     /gene="dusA"
                     /locus_tag="ACFOCA_000176"
     CDS             complement(12924..13934)
                     /gene="dusA"
                     /locus_tag="ACFOCA_000176"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HFC6986955.1"
                     /translation="MNDNTHTLPPRHLSVAPMLDWTDRHYRYMARQITRNTWLYSEMV
                     NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPS
                     PRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTL
                     RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
                     EAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI
                     QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGSLILEAWKEVERANT
                     RE"
     gene            complement(13965..14456)
                     /gene="dtd"
                     /locus_tag="ACFOCA_000177"
     CDS             complement(13965..14456)
                     /gene="dtd"
                     /locus_tag="ACFOCA_000177"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HFC6986956.1"
                     /translation="MRAVIQKTVGAKVDVVSEAGTETCGKIDGGFVVLLGVTHSDTEK
                     DARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPSFSQAAP
                     AEQAQQLYLRTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
                     VPD"
     gene            complement(14530..15288)
                     /locus_tag="ACFOCA_000178"
     CDS             complement(14530..15288)
                     /locus_tag="ACFOCA_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6986957.1"
                     /translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
                     HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
                     VRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQQLLLKGLSFEGLMKR
                     YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRNPVKLGERYYLFKLSVVGKNPDA
                     QPFELVRNQLEQGLRQEKARLKIDALLEENGVKP"
     gene            complement(15359..16225)
                     /locus_tag="ACFOCA_000179"
     CDS             complement(15359..16225)
                     /locus_tag="ACFOCA_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6986958.1"
                     /translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
                     AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
                     KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEI
                     LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
                     AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
                     ALLGKANIKPAK"
     gene            complement(16274..16552)
                     /locus_tag="ACFOCA_000180"
     CDS             complement(16274..16552)
                     /locus_tag="ACFOCA_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6986959.1"
                     /translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
                     VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
     gene            complement(16552..16842)
                     /locus_tag="ACFOCA_000181"
     CDS             complement(16552..16842)
                     /locus_tag="ACFOCA_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HFC6986960.1"
                     /translation="MEYFMLLATDGENVYEARMAARPEHLKRLETLKSEGRLLTAGPN
                     PLPEDSNRVSGSLIVAQFESLDAAEAWAEDDPYVHAGVYSEVLIKPFKAVFK"
     gene            complement(16845..17375)
                     /locus_tag="ACFOCA_000182"
     CDS             complement(16845..17375)
                     /locus_tag="ACFOCA_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HFC6986961.1"
                     /translation="MKFVSDLLSVILFFATYTVTKNMIAATAVALVAGVVQAAFLYWK
                     YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
                     ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
                     FIIQGIYLSTCLKKED"
     gene            17683..20037
                     /gene="tspA"
                     /locus_tag="ACFOCA_000183"
     CDS             17683..20037
                     /gene="tspA"
                     /locus_tag="ACFOCA_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_164729270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark-like protein
                     TspA"
                     /protein_id="HFC6986962.1"
                     /translation="MKNNRQIKLIAASVAVAASFQAHAGLGGLNIQSNLDEPFSGSIT
                     VTGEEAKALLGGGSVTVSEKGLTAKVHKLGDKAVIAVSSEQAVRDPVLVFRIGAGAQV
                     REYTAILDPVGYSPKTKSALSDGKTHRKTAPTAESQENQNAKALRKTDKKDSANAAVK
                     PAYNGKTHTVRKGETVKQIAAAIRPKHLTLEQVADALLKANPNVSAHGRLRAGSVLHI
                     PNLNRIKAEQPKPQTAKPKAETASMPSEPSKQATVEKPVEKPEAKVAAPEAKAEKPAV
                     RPEPVPAANTAASETAAESAPQEAAASAIDTPTDETGNAVSEPVEQVSAEEETESGLF
                     DGLFGGSYTLLLAGGGAALIALLLLLRLAQSKRARRTEESVPEEEPDLDDAADDGIEI
                     TFAEVETPATPEPAPKNDVNDTLALDGESEEELSAKQTFDVETDTPSNRIDLDFDSLA
                     AAQNGILSGALTQDEETQKRADADWNAIESTDSVYEPETFNPYNPVEIVIDTPEPESV
                     AQTAENKPETVDTDFSDNLPSNNHIGTEETASAKPASPSGLAGFLKASSPETILEKTV
                     AEVQTPEELHDFLKVYETDAVAETAPETPDFNAAADDLSALLQPAEAPSVEENITETV
                     AETPDFNATADDLSALLQPSKVPAVEENAAETVADDLSALLQPAEAPAVEENAAEITL
                     ETPDSNTSEADALPDFLKDGEEETVDWSIYLSEENIPNNADTSFPSESVGSDAPSEAK
                     YDLAEMYLEIGDRDAAAETVQKLLEEAEGDVLKRAQALAQELGI"
     gene            complement(20209..20625)
                     /gene="gloA"
                     /locus_tag="ACFOCA_000184"
     CDS             complement(20209..20625)
                     /gene="gloA"
                     /locus_tag="ACFOCA_000184"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HFC6986963.1"
                     /translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
                     GYGDETDSTVLELTHNWDTERYDLGNAYGHIAIEVDDAYEACERVKRQGGNVVREAGP
                     MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
     gene            complement(20672..21841)
                     /gene="lapB"
                     /locus_tag="ACFOCA_000185"
     CDS             complement(20672..21841)
                     /gene="lapB"
                     /locus_tag="ACFOCA_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HFC6986964.1"
                     /translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
                     YKSLDALVDRNSGRAARELAEVVDGRPQSYDLNLTLGKLYRQRGENDKAINIHRTMLD
                     SPDTVGEKRARVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD
                     WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALEANKKCTR
                     ANMILGDIEHRQGNFPAAVEAYAAIEQQNHAYLSMVGEKLYEAYAAQGKPEEGLNRLT
                     GYMQTFPELDLINVVYEKSLLLKGEKEAAQTAVELVRRKPDLNGVYRLLGLKLSDMNP
                     AWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
     gene            complement(21852..22166)
                     /locus_tag="ACFOCA_000186"
     CDS             complement(21852..22166)
                     /locus_tag="ACFOCA_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly LapA
                     domain-containing protein"
                     /protein_id="HFC6986965.1"
                     /translation="MKLIYTFIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVV
                     LFGAFVVGIIFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESTK
                     QP"
     gene            22476..23474
                     /gene="ilvE"
                     /locus_tag="ACFOCA_000187"
     CDS             22476..23474
                     /gene="ilvE"
                     /locus_tag="ACFOCA_000187"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFC6986966.1"
                     /translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLSLAPGA
                     HALHYGSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETEAYLDALVE
                     LVKRAADEIPDAPSALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
                     KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
                     FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
                     ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
     gene            complement(23660..24445)
                     /gene="fabI"
                     /locus_tag="ACFOCA_000188"
     CDS             complement(23660..24445)
                     /gene="fabI"
                     /locus_tag="ACFOCA_000188"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFC6986967.1"
                     /translation="MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL
                     EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
                     DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
                     GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
                     RNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
     gene            complement(24600..25421)
                     /gene="dapD"
                     /locus_tag="ACFOCA_000189"
     CDS             complement(24600..25421)
                     /gene="dapD"
                     /locus_tag="ACFOCA_000189"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HFC6986968.1"
                     /translation="MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRV
                     AERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAG
                     FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
                     TGEIYQGRVPTGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
     gene            complement(25431..25661)
                     /locus_tag="ACFOCA_000190"
     CDS             complement(25431..25661)
                     /locus_tag="ACFOCA_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986969.1"
                     /translation="MPSERRRRGIKVLPPFCIDSGAEKAIPAARPIPKRQCSATACVL
                     LTNMRLRGTIAHSFQMNILPENTGKRPTKHLT"
     gene            complement(25631..27274)
                     /gene="pgi"
                     /locus_tag="ACFOCA_000191"
     CDS             complement(25631..27274)
                     /gene="pgi"
                     /locus_tag="ACFOCA_000191"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6986970.1"
                     /translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
                     LFDYSKNRLGEDTLQLLCRLAETADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
                     DAVYVDGRDVLPEIRRELNRALEFAHSLDDGSYQGITGKRITDFVHIGIGGSDLGPAM
                     CVQALEPFRRHIAVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAQAV
                     KAWYRGAGFSESETACHFCAVSADTAAAAAFGIAAERVFAMYDWVGGRYSVWSSVGLP
                     VMVAVGGARFRELLAGAHAMDSHFFHTPPRRNIPVLMALIAVWYNNFQHADGQTAVPY
                     SHNLRLLPVWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
                     RLIPCDFIVPMTAQGVEDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
                     LAPHKEFPGNRPSNSILLDRLTPYNLGMLMAAYEHKTFVQGTIWNVNPFDQWGVEYGK
                     QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGGGAA"
     gene            27784..29016
                     /gene="pilG"
                     /locus_tag="ACFOCA_000192"
     CDS             27784..29016
                     /gene="pilG"
                     /locus_tag="ACFOCA_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4 pilus assembly protein PilG"
                     /protein_id="HFC6986971.1"
                     /translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
                     KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
                     PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
                     KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTV
                     MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
                     ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
                     LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
                     TLLVAMYLPLFNLGNVVA"
     gene            29090..29950
                     /locus_tag="ACFOCA_000193"
     CDS             29090..29950
                     /locus_tag="ACFOCA_000193"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HFC6986972.1"
                     /translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
                     AKKHLNLPLTEKESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
                     SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
                     LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAAL
                     GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
                     VNWWLTHPVL"
     gene            29952..30584
                     /gene="coaE"
                     /locus_tag="ACFOCA_000194"
     CDS             29952..30584
                     /gene="coaE"
                     /locus_tag="ACFOCA_000194"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258461.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFC6986973.1"
                     /translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
                     IALPEIRRLFGDTVFDTQGLLRRDILRKEVFASPSRKALLESVMLPLIFSEIKKQQET
                     FTDAVYGIVEIPLLTEKRQFVSLIRRVLTISAPLEKRIGRVMARSGLTRGEVADIISH
                     QASESERLLLADDVLLNDGSLKSLCEKTMRLHAFYSGIFASKPTQGKHND"
     gene            30577..30786
                     /locus_tag="ACFOCA_000195"
     CDS             30577..30786
                     /locus_tag="ACFOCA_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HFC6986974.1"
                     /translation="MTESRQTRLQVKCPTCQTAVVWKPENAFRPFCSQRCKLIDLGGW
                     ADGKYTVSSQTESLPEISEPDMAYR"
     gene            complement(30871..32547)
                     /gene="pilB"
                     /locus_tag="ACFOCA_000196"
     CDS             complement(30871..32547)
                     /gene="pilB"
                     /locus_tag="ACFOCA_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HFC6986975.1"
                     /translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
                     PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
                     PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
                     YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
                     AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
                     ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
                     ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
                     DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
                     CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
                     MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
BASE COUNT         7687 a         9138 c         8287 g         7482 t
ORIGIN      
        1 gtaaaattca tgaaaatatg gattttcagg aatatgtctt ttatcttcat aagcctcgta
       61 ttcaggatag gcagatggca tttttttaac cccgtaagta agcaatcttt ctcccatagt
      121 cgtgcttaaa ctacacgcat cttttcggat aacaatatcg tccacgctat ccaaaccgtc
      181 gcgtagaaat tggataaagt gcgctttgtt ttgctggttg tatggctcaa gaacccagcc
      241 ttggtcggtt tttttgtaat agacgctaat ctctatcaaa ttaatggagt aagcatcctg
      301 cccgggcgtg tcggaaagcc attttgtggc attgtcttgc gtataccgtg caagatagcc
      361 ataagggata accattttga tgccctgaaa atcaaatgta accgtatgtt caaatcctgt
      421 cattggctcg agattgttga aactggtttg ttcattaaca ggttcacatg aggtcatagt
      481 aaaaacactc ccaataaaca aaataaaaag ttgataaatg gtagtagcat atggtctcat
      541 aatttcaagc ttagaaatta gttaaagaat atattcatgg tagatactaa ctctttaagt
      601 tgacatattg tgcgatgtcg agggctgtac cgtattttcc catcgtattt tcccatcgta
      661 ttttcccatc gtattttccc gttctttata tgagcggcag gcatcctcat aaaagaaggg
      721 ataccgataa ggaaaaatac cccagcataa aaaatatact gattaatcaa tacaaatcca
      781 acaaacagtt catcgtattc ttttctgttg gcgtataaaa atactgatat attccttcac
      841 tttcataggg cgacgcttta tgtaccgtcc tgtgtgttga aacgtcggtt ttccttaccg
      901 cctgccccgc ttttccctga ttgctgccaa ctgccgtccg aacttgaacc gtcaggtttc
      961 agacggcatt ttttctgcct gctcccacaa ttgccgtttt tgtgcggcgg tcagtttttt
     1021 gacggcgatt tcctgcctga gtgccgtgcc tttatccatc ccgcctgcaa cgatacgcat
     1081 cgccaccggt ttgaatacgc gggtatattt cgcgccttta ccggttgtgt gggcggcaag
     1141 ccgctgttgc ggattcgggc tgatgccgca atagaacgcg ctgttttcac acaatatcag
     1201 gtaaacgctc cagtttgacg cgttcatctg cctgcatcct gagttttctc cccgttccaa
     1261 ggcgcaactt tcagcagcag cagcataccc ggtagggcga gtgcgaaaca cagttggaaa
     1321 aacggtacat aaccgagcca ttcaatcaga taaccggcaa aggaattgat gaccgtgcgc
     1381 gggacggcgg acaggctggt aaacagcgca agctgcgttg cggtaaatgc gggattggtt
     1441 tcacgcgcca tatacgatac gaacgccgcc gtccccaacc ccacgccgac cgcttccgcg
     1501 ccgataactg ccgccagcat cagcctctcg cctgtgccga ccgtgtcgaa aggtccgaac
     1561 cctgccagcc atacaaaccc caaaacggtt acagcctgca ccgcgccaaa tagccacaag
     1621 gctttgttta cgccgatttt cagcatccac acgccgccca agatacctgc cgccactgcc
     1681 ggccacagtc ctgcattttt cgcaatcaaa ccgatgtctg tcttgctgaa acccatatcc
     1741 agataaaacg gcgttgccaa cgcggttgcc atactgtcgc cgagtttgta aaggaagata
     1801 aacagcagca cgcacaccgc cgaagcgatg cccttgcgcg taaaaaattc tttaaacggc
     1861 tctaccacgg tctgcttcaa cgttttagga acggcaggcg gcaacacggg ttcgcgcgca
     1921 agaaacagcg tcatcagaag gccgggcagc ataaataatg aagtgataac aaatacttct
     1981 gaccacggca tcctgtctgc caacaccaaa ctcaatgaac cgggaatcag ggcggtaacc
     2041 cgataggcgt tcacatgaac cgagttgccc aaacccaatt cttcgtccga caaaatctcg
     2101 cgcctgaacg catccaatac aatgtcctga ctggcggaaa aaaaagcgac aagcaccgac
     2161 aagccggcaa tcagcggcag atgattacgg gggtttaaaa aggcataggc cgccaaagcc
     2221 gccagcaacc ctgcctgcgt cagcagcatc cacccgcgcc gccgtcccaa aacgggcagc
     2281 ctgaccgcgt ccatcagcgg cgaccacaaa aatttccaag taaacggcag accgattaac
     2341 gccatcagcc cgatgctctt caaatccacc tgctcgctgc gcaaccacgc cggaatcagg
     2401 ttaatcagaa agtacagcgg cagccccgag gtaaaccccg taaaaataca aacaagcata
     2461 tttcgggaaa agatttgccc gataaaacct gatttcgata cagtcatggt tcaaacagcc
     2521 aagaaataaa agcctattgt agcaaatatc gcccaaccgc tgaaaaacac cgcccctgct
     2581 ccgccgtttt gccgttcaaa tgcaaaatgc cgtctgaaac tgtgttcaga cggcattgct
     2641 tttctgaaaa cccgacgtgc ttacaggctg taatacattt caaattccag cggatgcggt
     2701 gccatgcgga tgcggcggac atcttcctct ttaaaggcga tatagctgtc gatccagtct
     2761 ttgctgaaca cgccgccgcg caggaggaat tcgtggtcgg ctttgagggc ggcgagggct
     2821 tcttccaaag aggcgcaaac ggtcgggacg agcgcgtctt cttccggcgg caggtcgtac
     2881 aggtttttat cggcaggatc gcccggatgg attttgtttt gaataccgtc caaacccgcc
     2941 atcaacaggg cggcaaatgc caaatacggg ttggcggtcg gatcggggaa acgcgcttcg
     3001 atgcggcgcg ccttgctgct gttcacggac ggaatgcgga tggaagcgga acggtttttg
     3061 gcggaatatg ccagtttggt cggtgcttca aagtgcggca cgaggcgttt gtaggagttg
     3121 gtggacggat tggtaattgc gttcagggct ttggcgtgtt tgatgatgcc gccgatgtag
     3181 tagagcgcgg tgtcgctcaa gccggcatag ccgtcgcctg cgaacaggtt ttgaccgtct
     3241 ttccaaatgg attggtgaac gtgcataccg ctgccgttgt cgcccataat cggtttgggc
     3301 ataaaggtgg ctgttttgcc gaagttgtgg gcaacgtttt gaatcacata tttcatgtct
     3361 tgggtttggt cggcgcgttt gaccaaggtg gcgaaacgcg tgccgatttc catttggctg
     3421 ccggtaccga cttcactgtg gtggacttcg acttcgatgc cgagtccttc caaaatgttt
     3481 accatcgcgg aacgcaaatc ctgaccgcag tcaatcggcg cgacgggcgc gtagccgcct
     3541 ttgacggcgg gacggtggcc ggtgttttga ccgtccatat gcaggccgct tgcccacgcg
     3601 ccgctttcgg acgtgatttc gtaacgggtt ttgtgcatgt cggtttcaaa ttctacgccg
     3661 tcgaagacga agaattcggg ttcggggccg aagtatgccg tgtcgccgat gccggaagat
     3721 ttcaaatagg cttcggcgcg gcgggcgatg gagcgcgggt cgcggtcgta accctgaccg
     3781 tcggcagggt cgatgacgtc gcaggtaatg acgacggtaa catcatcata aaaaggatcg
     3841 acgaaggctg tagacgcatc gggacgcaac tgcatatcgg aagcctgaat gcctttccag
     3901 ccgccgatag acgaaccgtc aaacgcctga ccgttttcga accactcttc ggggtcttcc
     3961 aacacgatgc gcgcaggcac ggtaaagtgg tgctgcttgc ctttggtatc ggtaaagcgc
     4021 aaatcgacaa agcgggcttc gctttcttca atcaatttta cggcgttttt aatagacatt
     4081 tttcagctcc tggaaaaggg aaatagcaaa atatgcggaa cgcggcagat tagctcaaag
     4141 ccagcatgat tctaccacgt ccatgccgtc tgaaactggc cctgcgtcaa attccaagct
     4201 gtaaaatata gtttcagacg gcaatattgt caacaatatg cttcggtttg cccgttccca
     4261 agcagaatgc ccgccctttt atccgaatgc cgacaaaaca gatgccgtct gaaagcagtt
     4321 cagacggcat ctgttgtttg gtttgaaaac ggtcagcgag gatagccgtt gcagacaaat
     4381 ttgtactgag cctctccaag cgtaccggga ataacataat tccattcggc ataggatggt
     4441 gtataagaag cgatagagtt tcccgatttg gaataccacg ttgccgtcaa tatcctaaaa
     4501 cgtttaccac tgcaatccat ttcttccaac gttttagctg tattaaaaaa ttttccattg
     4561 ccatactttt gcggcttggc gaaccttgtt tcaaaccatg cactgttgtc cgtacggctg
     4621 tctgcatcac caaacgtggc agtattacta tctaccaata cccaatccgc cgccaccgcc
     4681 ggtgttgcca accccaatgc aaatactgcc aagcacaaca tctttttcat gtccgaccct
     4741 ctcgtccttg tcaacaaaat aaagttaaat tgtaaaaaaa aacgactttt ttcaagagaa
     4801 aaatattccg tcatgctatc tgacaaccgt ttcagacggc atcgtttcca tctgtacgcc
     4861 gccgttataa aatagccttc ccgtcttttg gaacacgacc atgaccgccc tcccccgtta
     4921 ctccgttttt ggcaaccccg ttgcacacag taaatcgccg caaatccatc agcaatttgc
     4981 ccttcaggaa ggcgttgaca ttgaatacga acgcatttgc gccgacatcg gcggttttgc
     5041 acaggcggtt tcgacatttt ttgaaacagg cggttgcggg gcaaacgtta ccgtaccgtt
     5101 caaacaggaa gcgtttcatc tggcggacga gcattccgaa cgcgcattgg cggcaggtgc
     5161 ggtcaatacg ctgattccgt tgaaaaacgg caagctgcgt ggcgacaaca ccgacggtat
     5221 cggtttgacc aacgacatca cgcaggtcaa aaatattgcc atcgagggca aaaccatttt
     5281 gcttttgggc gcaggcggcg cggtgcgcgg cgtgattccg gttttgaaag aacaccgccc
     5341 tgcccgtatc gtcattgcca accgtacccg cgccaaagcc gaggaattgg cgcagctttt
     5401 cggcattgaa gccgtcccga tggcggatgt gaacggcggt tttgatatca tcatcaacgg
     5461 cacgtccggc ggtctaaacg gtcagattcc cgatattccg cccgatattt ttcaaaactg
     5521 cgcgcttgcc tacgatatgg tgtacggctg cgcggcaaaa ccgtttttag attttgcacg
     5581 acaatcgggt gcgaaaaaaa ctgccgacgg actgggtatg ctagtcggtc aagcggcggc
     5641 ttcctacgcc ctctggcgcg gatttacgcc cgatatccgc cccgttatcg aatacatgaa
     5701 agccatgtaa tatgttccgc atcgtcaaat ggctgattgc cctgcccgtc ggcatcttta
     5761 tctttttcaa tgcctatgtg tacggcaaca tcattaccta ccgcgccgtc gcgccccatc
     5821 ggactgcctt tatgtcgatg cggatgaagc agtttgaaca ggaaggtcgc gatgtcgcac
     5881 tggattaccg ctgggtgccc tacaaccgca tctcggtcaa cctgaaaaaa gccctgattg
     5941 cttccgaaga tgcccatttt gccgggcacg gcggcttcga ttggggcggc attcaaaacg
     6001 ccatcaggcg caaccggaac agcggcaaag tgaaggcggg cggctcgacc atcagccagc
     6061 agcttgccaa aaacctgttt ttaaacgaaa gccgcagcta tatccgcaaa ggcgaagaag
     6121 cggcgattac cgcgatgatg gaagccgtta ccgacaaaga caggattttt gaactgtatt
     6181 taaactcaat cgaatggcac tacggcgttt tcggcgcgga agccgcgtcc cggtattttt
     6241 atcaaatacc cgccgccaag ctgaccaaac agcaggcggc gaaactgact gcccgcgtcc
     6301 ccgccccgct ctactacgcc gaccatccga aaagcaaacg gctccgcaac aaaaccaata
     6361 tcgtgctcag acgcatgggt tcggcagagt tgcctgaaag cgacacggac tgagtgccgc
     6421 cgcaatataa aatgccgtct gaaatatcat tcagacggca tatgctttct gcctttaccc
     6481 ttttctctaa aacgcaacgg ggcggtcatt atcgcttttg tccttctaca taacggtcag
     6541 acacaaaacg tgtccgacac ggacaacttc ccaaaaacgg caggcaaaaa aaataaccgc
     6601 ttataagcgg ttttttggtg gccagaggcg gaatcgaacc gccgacacac ggattttcaa
     6661 tccgttgctc taccaactga gctatctagc ctttgtctgt ctcgttaaga gatgcgtatt
     6721 aaaccaaatt acgggacgac atgcaagcat atcgggcaat attctttgaa aacaggttta
     6781 agtcaatgtt ttaaatttga attaatttat gtaaaaacaa cataaatccg tatttttgcc
     6841 gcctgcccga cgatattagg tcgcccgtct gaaaaatatt ttcaatattt gaagttctta
     6901 cccagataaa cagaacgaac ctgttcgttt ccgaccaaat catcaggttt tcccgatgcc
     6961 aacaccgtgc cgtctgaaat aatgtaggcc cgatcgcaga tgctgagggt ttcgcgtacg
     7021 ttgtggtcgg taattaatac gccgataccg cgcgacttga gaaatccgat gattttttgg
     7081 atgtcgatga cggcgatggg atcgacgccg gcaaaaggct cgtccaacaa aataaaatgc
     7141 ggtttcatgg caagtacgcg ggcgatttcg acgcgtcggc gttcgccgcc cgacaaagat
     7201 ggggcaggat tattgcgcaa acgctcgata ttcaggtcgg caagcagttt ttcaacttcg
     7261 ccgtcgatgc ggcttttgtc tttggtactg atttctaaaa tggcgcggat gttttgttcg
     7321 acggtcattt tacggaaaat agaggcttcc tgcggtaggt agccgacacc caggcgggcg
     7381 cgttcgtgta tgggcaggtg acgcaattcc tgcccgtcca gcatcacgct gcccgcatcg
     7441 gcggcaatga gtccaacaat catgtagaag ctggtggttt tacccgcacc gttgggcccg
     7501 agcaggccga cgacttcccc gctttcgatt tcaagggaga agcttttaac gacttggcgt
     7561 tttttgaaac ttttttgcag gttttgaaca acaaggcggc tgacgtttgc gctcataaat
     7621 atctcttcaa tatcttcggt cggcaaatgc cgtccgaacc aggtttatgt ttcagacggc
     7681 attttgggat tattcggatt tttgcgtact cgaaggctgg ataacgacgc tgaccctgcc
     7741 ggatttggaa gcggattttg cgccggattt tgtgctgccg ctgatggtat agacttcggt
     7801 tttggtgttg tatgtaatca ccgcaccttc ggcgacatcg ccgccgcgct gtactttggc
     7861 attaccggtt aagactacgg tgctgcctgc agatgaataa gcaacgttgt ttgcctgtcc
     7921 gcgcaccgtg cctttgccgc cgtccaatgt ctggctgaag cggactggcg aaccttccgc
     7981 cctcacggat tcgccgcctt tgccgccgcg tgtaacattg acgcgggcgg cggaaatatt
     8041 gagcgtaccc tgtctgatga cgacgtttcc gctgaatgtg gtgctttggt tggcttgatc
     8101 gagcgaacct tggtcggcct caatctgaat aggctgcctg ctgtcgcttt gaagggcaaa
     8161 agcgggggac gccgaaaaaa atgctattaa aacaaatagc ttacatatct tttgtatcat
     8221 aaatcgtggc tttcacttta gatgagaagt tcaacatgcc tgttttgtgg tcgtaagtca
     8281 tgccgcccgc ctgaccgtgc gatgcaccat attggaaact gacaggcgta tcggtttggg
     8341 catattgaga ttcggtatcg acgtgcagct tttcggcttc aactttaccc gcctgccgtt
     8401 tgccgtcagc ggttttggtc agcacaacgt tgtttttaaa aagaacctgt ttgttttcgg
     8461 tatggtaaac ggcttcatcg ctgccgactt cgtacaacaa cctgccttct tggaagaaca
     8521 cgagatgcgg cgaatcaaaa tggatgtcgc tgctttcggg aaactgtttc gcgcctttcg
     8581 cgctcaaatg ttcttttaag tatccctgtt cgtcaaaccg cctgccatcc aagccgtcca
     8641 ttgtgtattg cggttcgtcg ggattgagcc tgacttcttc aatctcgact tcgctgatgc
     8701 gtcccaacca tgccgacaga ccgcccaagg caaccgccaa tatcaatggg aacgcaattc
     8761 cgtaccgcca tcttattttc atttgatgta ctcgttcaaa gccgcgccca aagtcccttg
     8821 cgcctgcata atcaggtcgc acacttcgcg caccgcgccc gcaccgccgg ggcgtttggc
     8881 aatataggcg gcgtgttgca gcgtaaacca atgcgcgtcg ggaacggcaa ccggcaatcc
     8941 gcaacgcacc atcaccggca aatcgaccac gtcgtcgccg acaaaggcac actcggcttc
     9001 ttccacgccg acctgagcgc gcagctcttc atacgcggcg cgtttgtccg aaatgccttt
     9061 gaagtagtaa tttatgccca actgtttgac gcggatgccg acggagggcg cgtcccgacc
     9121 tgtgataatc gcagtctgca cgccgcttgc ctgaagcatt ttcagaccgt gtccgtccag
     9181 tgtgtgaaac gatttgattt cttcgccgtt atcgcggata aagatgcgcc cgtcggtcaa
     9241 aacgccgtcc acatccagga tcaacagttt gattttggcg gcgcgcgcct gtaattcggg
     9301 agaaattgcc tgcatgggat ttccttgttt tcagacggca tatcttacca caaatgccgt
     9361 ctgaaacggc tgcaacgcct tatacaatcc gtgccgccag caggtcgtgc atattcagcg
     9421 cgccgatcag cacgccatct gcatcggtaa ccagaagccc gttcacatgg tttgcctgca
     9481 tgactttcag ggcttcggtg gcgagacgtt cggcggagat ggttttagga tgcgtatgca
     9541 tgacttcgtc tatcgaaaga ccggtaaaat tgtcgcattc ttgaaacagg cggcgcaaat
     9601 cgccgtcggt gaatacgcct ttcagacggc cttgcccgtc cgttaccgcc aacatgccca
     9661 gccctttttc actcatgctg acgatggctt ctttcaaggg cgtgccgagt cggacggcag
     9721 gcaggccgcc gcctttgtgc ataatgtcgg caacgcgcaa aagtaggcgt ttgccgaggc
     9781 tgccggcagg atggctcaag gcgaaatcgt cgggcgtgaa cgcgcgtgcg cgcagcagga
     9841 cgaccgccaa cgcatcgccc aaagccatga cggcggtggt gctggtggtc ggggcaagcc
     9901 ccagcgggca ggcttctttg gaaaccgacg ccgtgatgtg gatgtcggca tggcgcgcca
     9961 tggttgaatc ggggcgggcg gtgatgcaga caagcgtgat gtctttgcgt ttgagcgcgg
    10021 ggatgatggc ggcgatttcg tcgctttcgc cggaattgga aatcgcgacg accacgtcgt
    10081 tgtccacaat catgcccaaa tcgccgtgtg ccgcttccgc agggtggaca aaaaacgcgg
    10141 gcgtgccggt cgaggccatc gttgccgcca ttttgcgccc gatatgtccc gacttgccca
    10201 tgcccgtgat aacgaccctg cccttgcagt gcaacaacgc gtctgccgca aggacgaagt
    10261 tttcgtccaa ttccgttgca atttcgcgca agccttcctc ttcggtgtgc aacacttcgc
    10321 gcgcccagtc gagatatttt ccgttttctg ccattgccat ccgcctttgc tgtaataaaa
    10381 ctacccaaaa tttccgaatc ggggtagcat aagcctttga aacatacaca tccatccaaa
    10441 ggaatcagaa atgactattt tatcggacgt taaagcatta ggacaacaaa tctggctgga
    10501 caacctttcc cgctcgctcg tgcaaagcgg cgaattggcg caaatgttga aacaaggcgt
    10561 gtgcggcgta acttccaatc ccgccatttt ccaaaaagcc ttcgccggcg atgccctgta
    10621 cgccgatgaa gtcgccgcgc tcaaacagca agatctgacc ccgaaacaac gctacgaaac
    10681 catggcggtt gccgatgtgc aagccgcctg tgacgtgtgc cttgccgaac acgaatccac
    10741 cggcggcaaa accggtttcg tcagcctcga agtttcgccc gaattgtcca aagacgcgca
    10801 aggcacggta gaagaagcgc gccgcctcta cgccgccatc gggtgcaaaa acgcgatgat
    10861 taaagtgcct gccaccgacg caggcatcga tgcgctcgaa accctcgttt cagacggcat
    10921 cagcgtaaac ctgaccctgc tgttctcacg cgcccaaacc ctcaaagcct acgccgccta
    10981 cgcgcgcggc attgccaaac gcttggcagc cggacaaagc gttgcccata tccacgtcgt
    11041 cgccagcttc ttcatctccc gtgtggacgg cgcgctggac acaacactgc ccgaccacct
    11101 caaaggcaaa atcgccatcg cccttgccaa agccgcctac caagactggg cacaatactt
    11161 cggcagcccg gaatttgccg cactggaaac ccaaggcgca aaccgcgtgc agcttttatg
    11221 ggcatctacc ggcgtgaaaa acccggccta tcccgacaca ctctacgttg acagcctgat
    11281 cggcgcgcac accgtcaaca ccgttcccga tgccacgctc aaagccttca tcgaccacgg
    11341 cacagccaaa gctacgctga ccgaaggcgc ggacgaagca caagctcagc tcgccgaaac
    11401 cgccgcgctc ggcatcgatg tcgaaacctt ggcggcacgt ttgcaggaag acggtttgaa
    11461 acagtttgaa gaagcgtttg aaaaactgct cgcaccgttg gtttaaactt ttcatccccg
    11521 atgccgtctg aaaggctttc agacggcatc gcccgtttga ccggacacag tgcggcatat
    11581 caaggattca ccctaaaaat attaatgggc aagaagttaa tgcacgacat tacccaccaa
    11641 cacaaaagga aatagaatca tggcaaaagc actcgaaatc atttcaccca atgaaattta
    11701 ttcagatctg atttttaagg atccggtacc tccccataca atatatacag aattgatgaa
    11761 actggttagt agaaatgcaa gtaatgagag aatcgcagat agagccttcg attttttctc
    11821 gtccggcctt atggatggtt cagctaccga agagcaatat aatgccctat atgatttaac
    11881 cttacttgaa gaacccggga tggaactgaa taaagatgag ataatggctt tgattaatag
    11941 tcttaaataa aggggccgta ccggatatgt acacaggacg tttcgccccc agcccgaccg
    12001 ggctgctcca catcggctcg ctgctgaccg ccgccgcttc ctatgccgat gcacgctcaa
    12061 acggcggcaa atggctggtc cgcatggaag acctcgatcc gccgcgcgaa atgccggggg
    12121 cggcaagcca tatcctgcac acgcttgagg cattcggatt cgagtgggac ggagaagtcg
    12181 cctatcagag ccgccgttac gccctgtatg aagaaacact atgccgtctg caaaccgccg
    12241 gactggtcta tccctgccat tgcagccgca aagactggca ggctgcggca gtccacggcg
    12301 cagacggatt cgtctataac ggacgttgcc gcaatccgca gcaacgccct gcactgcaag
    12361 gcaaacagcc tgcgtggcgc atccgcgtcc ccgaccgcga catcggcttt tcagacggca
    12421 tcgtcggcgg ttacgcccaa aacctcgccc gcgacatcgg cgatttcgtc ctgcttcgtg
    12481 cagacggtta ctgggcatac cagctcgccg tcgttgccga cgatgccgaa cagggcgtta
    12541 cccacatcgt ccgcggacaa gacctgctcg tttccacgcc gcgccaaatc tatttgcagc
    12601 agtgtttggg cgttccgaca ccgcaatatg cccacctgcc gctgctgacc aacgcacaag
    12661 ggcagaagtg gtcgaaacag acgctcgccc ccgcattgga tttaaaccgc cgcgaacaac
    12721 tcctccgcca agtgttccgt tacctcaagc tgcccgaagc accggaaacc gaccgccctg
    12781 ccgaactgct cgactgggcg gtggcacact gggatatggg caaagtgccg aaacacgcca
    12841 ttaccacccc ctaaacaccg cccgacaaac gcacaaatgc cgtctgaagc cttcagacgg
    12901 catttcacac atacagcccc gccctattcg cgcgtatttg cccgctcaac ctctttccac
    12961 gcttcgagaa tcaggctgcc gtcgttgtct ttcaagagcg ttgcgtcgga aagcatacgc
    13021 cgccaagtcc gcgcaccttt caaaccgtgc atcagcccga ggctgtggcg gacgatgtgg
    13081 cgcaagattg tgccgcgtcc ggcttggatc tgggcttggc tgtatgtgta gaggcactgc
    13141 accaaatcgg cgtattcgat cgggctgcga gtatcgccgt aaaacaatct gtcccattcg
    13201 cgcatcacca tcgggttgtg gtacgcctcg cgcccgacca tcacgccgtc aacgtgttgc
    13261 aggtgtccgg cgattgcttc gttggtggtg atgccgccgt tgatgatgat ttccagcccg
    13321 ggaaactcct gcttgaggcg gtaaacgtaa tcgtatttca acgggggaac gtcgcggttt
    13381 tctttggggg aaagaccgtc cagccaagcg ttgcgggcgt ggacgatgaa ggttttgcag
    13441 gcggttttgt cgcgcagcgt gccgacgaaa tcggcaacgg tttggtattc ggtctgcctg
    13501 tccacaccga tacggtgttt gacggtaacg ggaataccga ccgcgtcctg catggcgttg
    13561 aggcagtcgg caaccagccc gacttcgttc atcagacacg cgccgaacga gcctttctgc
    13621 acgcgcggac tggggcagcc gcagttgagg ttgacctcgt tgtaaccgta tgcctcggcg
    13681 gctttggcgg ctttcgccaa atcggacgga tcgctgccgc ccagttgcag ggcgacgggc
    13741 tgctcgcctt cgttgaacat caaaaagcgg tctttgtcgc cgtaaacaat cgcgccggcg
    13801 ttgaccattt cgctgtacag ccaagtattg cgggtaatct ggcgcgccat ataacggtag
    13861 tgcctgtccg tccagtccaa catcggggcg acggacaggt ggcgcggggg aagggtgtgt
    13921 gtattgtcgt tcattgtcga tattttatca ttgcggattc aatttcaatc cggaacaacc
    13981 ttcatttttg gggaaatccg cgtcatgaaa gagtccagca gtatggttac cggcccgtcg
    14041 ttgcagagcg acacctgcat atgcgtgcgg aaacgccctg tttcgacatg aatcccgtgt
    14101 ccgcgcaaca gttccgccgt tcgcaggtaa agctgctgcg cctgttctgc aggtgcggct
    14161 tgggaaaacg aaggccgccg cccgcttgcc gcatcggcat aaagtgtaaa ctgcgacacc
    14221 agcagcaccg cgccgccgac atctttcaaa gacaggttca acttgcccgc ttcgtcttca
    14281 aacacgcgca aatgggcgat tttgtcggcg atatagcgtg catctttttc tgtgtcgcta
    14341 tgcgttacac cgagtagcac gacgaatccg ccgtcgattt tgccgcaggt ttccgtgccg
    14401 gcttcggaca cgacatccac ctttgcacct accgttttct gtatgaccgc acgcataagc
    14461 cgtcctcctt acctgaacgt gcaatgccgt ctgaaaaggc ttcagacggc atcggtatcg
    14521 gaaatgccat tacggtttga caccgttttc ttccaaaagg gcatcgattt tcaagcgggc
    14581 tttttcctgt ctcaaaccct gctccaattg gtttctgacc aactcgaaag gttgcgcgtc
    14641 ggggtttttc ccgaccacgc tgagtttgaa cagataatag cgttcgccca atttgaccgg
    14701 attgcgggta acgtcgcccc gattcatcgc tgcaaactgc gaagccagcg gctcgggaag
    14761 ctgctgcgcc ataatgaaac cgtcaaaagc ctgctcgtcg ttcggataac gcttcatcag
    14821 cccttcaaaa gacagccctt tgagcaggag ctgctgcgcc tgacgcgcct cctcttcggt
    14881 tgcgaagctg acctgctgca atttgatcat gcggatttgc cgctcataaa actgacgcag
    14941 tgcgctttcg gaaaccgttt ccgaacgttc cagaaaacgg acgtactcct cggcataaaa
    15001 agacgcttcg gcgattttaa agcggttttg gacatcctta tccttatcca aaccttcctt
    15061 caatgccctg tttttcaaaa cttccaaagt ttgcagccgg cggacggcat cgtttcggat
    15121 tgcctgcccg tccggttttt gggactgctc cgcatgccgg tctgcctgct gcatgatctg
    15181 cgccaccagc gtatccacca aagccgggtc gatttcgggt gctttggctg ccgcaaaacc
    15241 tgccaacatt gcagcaataa ctgcggcagc ggtttttttc tgtttcatgg tattccctgt
    15301 cctgcgcggc ggcaaaacgc ctgtctgaac gtcttgccgc catatcccgt tttcagaatt
    15361 attttgcagg tttgatgttt gccttgccca acagtgcacc gacggcacgg tcaatccgtt
    15421 ccgcctgaag gttgcccgca atctgtcctt tcatttcatc aaaagaaggc acttttacct
    15481 cgcggctgtc gttgacataa taaacgccgt agaaatcgcc gtttttcagc ggcgttgccg
    15541 taaattcgcc ttttttcaag tccttaattg cctgataaag cggcggaaca ccctgttcca
    15601 aatctttcag cggcacatat ccgaccggcg caccggtctg tttggtacgg tcgttgaggg
    15661 aatattgttt caagacggca tcgaaacctt ttttcgcctt caagtcggca accgcttttt
    15721 ttgcattttc ttccttgtcg gtcaggattt cgcccaactg gacttcctgc gtacctttgt
    15781 aaaaaccgct gatattgtca tatgcggctt ttacttcctg ctcggaaacc ggttgggttt
    15841 tggcgatatg caatgcgtat gcctcgccgt tcaagccata ttttaccgcc tgccaaacgg
    15901 ttttgaagga cggtttcttg tcgtcgcccg actttttcgc ttcggcacgc aatttggcaa
    15961 gcgcattttt aaactctgcc gaccggtcga gtttcaggcg tttcacttcc tgtgcgacca
    16021 cggtgttgac cacttcgttt tccagcaggg attggcgcag ttgcggcgtg tcttcggcac
    16081 ggctgttttc cgcacggaat gcggcaacct gcgcatcaat gacggaactg tcgattttct
    16141 gaccgttgac ggttgccagc gtttgggcaa acaggctgcc ggaacaggca agcagtgcaa
    16201 cggaagtcag gatttttgct ttcataatct tctctcttta aattttaaat tgaaatgttc
    16261 gggcagactt cattcagtcc gccgtatgga aatactcgtc aggggtagcc gcccggatgc
    16321 cgagcgcgtg aatcatgccg cctgaaaaca aatctttgag cagcgatttg accgttttct
    16381 ggcggttcag gcggcttacg ccttcaaaac ggccgctgac gaccaaaacg gcataatgtc
    16441 cgccgccggt attgcccgcg tgtcctttgt gcagatggct ctcatcgccg atttccaaca
    16501 ccagcggatc gagcgtctgc aggcgttcgc ggatcaaatc gacggccggc attatttgaa
    16561 caccgcttta aacggcttga tcagcacttc gctgtacacg cctgcatgaa catagggatc
    16621 gtcttccgcc cacgcctctg ccgcatccaa agactcgaac tgcgccacaa tcaaactgcc
    16681 cgaaacgcgg ttggagtcct ccggcaaagg attcgggcct gccgtcaaca gccggccttc
    16741 cgacttcagc gtctccagcc gtttgaggtg ttcgggacgt gccgccatac gcgcttcata
    16801 cacattctcc ccgtctgttg ccagcaacat aaaatattcc acagtcaatc ctcctttttc
    16861 agacaggtac tcagataaat accctgaata ataaagaaaa caagcatcag tgcagtcgag
    16921 ccgaacattt tatagttgac ccattgcgac tcgaaccggg taaacacaaa ccagttggcg
    16981 atacccataa aaatcaggaa accgacccac atatacgtca atttcgccca tacggcatcc
    17041 ggaagctgaa tctccctgcc gatactcgcc ttcaagccgt ttttaccggc gaggtggctg
    17101 ccccacagga acagcgcacc cagccaaaac aaaacgctcg gcttccacat aatgaagcgg
    17161 ctgtcgccca aaacaatggt tgcgccgccg aatacgacaa tcagcaccag tccgacccac
    17221 tgcatcgtat ccagcttttt atatttccaa tacagaaaag ccgcctgaac cacaccggca
    17281 accaaggcaa ccgccgtagc ggcaatcata tttttggtaa cggtataagt agcaaaaaac
    17341 aagatgacag acaaaaggtc gctgacgaat ttcatatcca aatgagaaag caaatcaaat
    17401 aaacgctaat catacaggca gaaccctgtt tttgcacctg caaaaccaac aaattttgtt
    17461 ttgattgatg caaatatgca cagatgtttt tgaaaaaaga tggagatatg tcataatttg
    17521 taaaaacggc gaatgattgc cgtttaaaat gtggcggcgg tcggtacatt cacatattaa
    17581 atgcccgccg gccgactgcc ccgccgatgc ccgatgatga cgaaatttac agactgtacg
    17641 cggtcaaacc gtattcagcc gccaacccac aggggataca tcttgaaaaa caacagacaa
    17701 atcaaactga ttgccgcctc cgtcgcagtt gccgcatcct ttcaggcaca tgctggactg
    17761 ggcggactga atatccagtc caaccttgac gaaccctttt ccggcagcat taccgtaacc
    17821 ggcgaagaag ccaaagccct gctaggcggc ggcagcgtta ccgtttccga aaaaggcctg
    17881 accgccaaag tccacaagtt gggcgacaaa gccgtcattg ccgtttcttc cgaacaggca
    17941 gtccgcgatc ccgtcctggt attccgcatc ggcgcaggcg cacaggtacg cgaatacacc
    18001 gccatcctcg atcctgtcgg ctactcgccc aaaaccaaat ctgcactttc agacggcaag
    18061 acacaccgca aaaccgctcc gacagcagag tcccaagaaa atcaaaacgc caaagccctc
    18121 cgcaaaaccg ataaaaaaga cagcgcgaac gcagccgtca aaccggcgta caacggcaaa
    18181 acccataccg tccgcaaagg cgaaacggtc aaacagattg ccgccgccat ccgtccgaaa
    18241 cacctgacgc tcgaacaggt tgccgatgcg ctgctgaagg caaacccaaa tgtttccgca
    18301 cacggcagac tgcgtgcggg cagcgtgctt cacattccga atctgaacag gatcaaagcg
    18361 gaacaaccca aaccgcaaac ggcgaaaccc aaagccgaaa ccgcatccat gccgtccgaa
    18421 ccgtccaaac aggcaacggt agagaaaccg gttgaaaaac ctgaagcaaa agttgccgcg
    18481 cccgaagcaa aagcggaaaa accggccgtt cgacccgaac ctgtacccgc tgcaaatact
    18541 gccgcatcgg aaaccgctgc cgaatccgcc ccccaagaag ccgccgcttc tgccatcgac
    18601 acgccgaccg acgaaaccgg taacgccgtt tccgaacctg tcgaacaggt ttctgccgaa
    18661 gaagaaaccg aaagcggact gtttgacggt ctgttcggcg gttcgtacac cttgctgctt
    18721 gccggcggag gcgcggcatt aatcgccctg ctgctgcttt tgcgccttgc ccaatccaaa
    18781 cgcgcgcgcc gtaccgaaga atccgtccct gaggaagagc ctgaccttga cgacgcggca
    18841 gacgacggca tagaaatcac ctttgccgaa gtcgaaactc cggcaacgcc cgaacccgct
    18901 ccgaaaaacg atgtaaacga cacacttgcc ttagatgggg aatctgaaga agagttatcg
    18961 gcaaaacaaa cgttcgatgt cgaaaccgat acgccttcca accgcatcga cttggatttc
    19021 gacagcctgg cagccgcgca aaacggcatt ttatccggcg cacttacgca ggatgaagaa
    19081 acccaaaaac gcgcggatgc cgattggaac gccatcgaat ccacagacag cgtgtacgag
    19141 cccgagacct tcaacccgta caaccctgtc gaaatcgtca tcgacacgcc cgaaccggaa
    19201 tctgtcgccc aaactgccga aaacaaaccg gaaaccgtcg ataccgattt ctccgacaac
    19261 ctgccctcaa acaaccatat cggcacagaa gaaacagctt ccgcaaaacc tgcctcaccc
    19321 tccggactgg caggcttcct gaaggcttcc tcgcccgaaa ccatcttgga aaaaacagtt
    19381 gccgaagtcc aaacaccgga agagttgcac gatttcctga aagtgtacga aaccgatgcc
    19441 gtcgcggaaa ctgcgcctga aacgcccgat ttcaacgccg ccgcagacga tttgtccgca
    19501 ttgcttcaac ctgccgaagc accgtccgtt gaggaaaata taacggaaac cgttgccgaa
    19561 acacccgact tcaacgccac cgcagacgat ttgtccgcat tacttcaacc ttctaaagta
    19621 cctgccgttg aggaaaatgc agcggaaacc gttgccgatg atttgtccgc actgttgcaa
    19681 cctgctgaag caccggccgt tgaggaaaat gcagcggaaa tcactttgga aacgcctgat
    19741 tccaacacct ctgaggcaga cgctttgccc gacttcctga aagacggcga ggaggaaacg
    19801 gtagattgga gcatctacct ctcggaagaa aatatcccaa ataatgcaga taccagtttc
    19861 ccttcggaat ctgtaggttc tgacgcgcct tccgaagcga aatacgacct tgccgaaatg
    19921 tatctcgaaa tcggcgaccg cgatgccgct gccgagacag tgcagaaatt gctggaagaa
    19981 gcggaaggcg acgtactcaa acgtgcccaa gcattggcgc aggaattggg tatttgattc
    20041 ccaactgccc tttcgcagat caaggatgcc gtttcagacg gcatcttttt tgccttatcg
    20101 gtgtaacgga taaagtttga accggcacag gctcaaacag caggccgacg gcaacaaaat
    20161 gccgtctgaa acccctaaag gcttcagacg gcattggcgg cggcggtatc aggcagtttg
    20221 ataggcaacc gaatcgtcac cgcttttctt ttgaatgaac tcgattttgt atccgtcggg
    20281 gtcttcgacg aaggctatca cggttgtgcc gtgtttcatc gggccggctt cgcggacgac
    20341 gtttccgccc tgccgcttca cacgttcgca ggcttcgtag gcatcgtcca cttcaatcgc
    20401 gatgtgtccg taagcgttgc ccaagtcgta tcgttccgta tcccagttgt gcgtcagttc
    20461 caaaaccgtg ctgtcggttt catcgccgta accgacgaag gcaagggtaa atctgccttc
    20521 gggatagtct tttcggcgga gcagtttcat gcccaaaacg ttttggtaga aatcaaggga
    20581 tttttcgaga ttgcccacgc ggagcatagt atggagtaag cgcatttttc gtgttcctca
    20641 ttggtggtgg ttaacttcga tttagtggtg gttaaacttc aattttattc ggggtaaacg
    20701 tctgccattt gttgcaggcg ggacagtgcc agaaaaagac ttgggatttg aagtggcagt
    20761 tgcggcaacg gtacatcacg ctgcgctgta gctgccgtcc gataaccgaa cgcatcatgt
    20821 cggcatcggc tttccaagcc ggattcatat cgctgagttt caaaccgagc aggcggtaca
    20881 cgccgttaag gtcgggcttg cggcggacaa gctcgacggc ggtttgcgcg gcttctttct
    20941 cgcccttaag cagcagggat ttctcgtaca cgacattgat caggtcaagt tcgggaaacg
    21001 tctgcatata tcctgtcaga cggttcaagc cttcttcagg ttttccctgc gcggcatagg
    21061 cttcgtaaag cttctcgccg accatgctca agtatgcatg gttttgctgc tcgatggcgg
    21121 cataggcttc gacggcggca gggaaattgc cttgtcggtg ttcgatgtcg cccaaaatca
    21181 tgttggcgcg ggtgcatttt ttgttggctt cgagtgcctt gccgacattg aaacgcgcga
    21241 catcgaaatt ggacttgaac agcgcggctt gggcaagttc gcaataaaac tgggcaattt
    21301 caaactgata ggtctgatcg tcatggctga gcagccgggc ggtttcaacc gctttttccc
    21361 aatccctgtc ctgttggtag atattgagca ggtgctgtct ggcttcacgc gccatttcac
    21421 cgtcttgcag ccccaaaaaa atctgttcgg cacgatcgac caaacccgcg ctttggtagt
    21481 tttgcgccaa ttcaaacagg acgcgcgcgc gcttttcgcc gaccgtatcg ggagaatcga
    21541 gcattgtccg gtgtatgttg atggctttgt cgttttcgcc gcgctggcgg taaagtttgc
    21601 cgagggtgag gttcaaatca tacgattgcg gccggccgtc gacgacttcc gccaactccc
    21661 ttgccgcgcg cccgctgttg cggtcgacca aagcgtccaa gcttttataa aatcccgaag
    21721 ggatgctttt tgcctgcttc aatacggttt tcatatccac gcgggcggca aaccagccca
    21781 tcgcgaagaa gacgggcaaa aggataatcg gcagcaggat aatccacaat tcgttgtcca
    21841 tatcggcttt cttaaggctg tttggtagat tcgggcgcat tttgcgccgg tggtgcggtc
    21901 agctccttcc ccgtcaaacg cgcatttttc tttacttcgg cacgcaacct gccgttctcg
    21961 ccacgtaacg acaacaaccg tccgaacaag gcaaacattc caaaaataat accgactaca
    22021 aatgcgccga acaatacgac aatcagcggc aaatcgaatt tttgccccgg caggtaggaa
    22081 aaggtaacgg catccgtatt aataacggca agcagcagga agagcagcag gataatgatt
    22141 ttgatgaagg tatagataag tttcatgttt gctccgtaaa taaaaacgcc gcccggacag
    22201 cttcgcactc tgaaccaaga ttgcgctagt ttaaacgatt tgcacggttt cggataggat
    22261 gcggcagcgt gttcagacgg catacggagt atgcgattgc cgacaatttt accaaataca
    22321 tcgttccttt ccatttgaaa aataacggat tggacaccgc atcgacagaa aaacccgccg
    22381 cgcacttgtc aaaaccctgt ttgcaggcgt atctttacaa tcttcaaatt caaaccgttc
    22441 attgaaacat atcagaataa gaaaggcttt acatcatgag cagacccgta cccgccgtat
    22501 tcggcagcgt ttttcacagt caaatgcccg tcctcgccta ccgcgaaggc aaatggcagc
    22561 cgaccgaatg gcaatcttcc caagacctct ccctcgcacc gggcgcgcac gccctgcact
    22621 acggcagcga atgtttcgag ggactgaaag ccttccgtca ggcagacggc aaaatcgtac
    22681 tgttccgccc gaccgccaac atcgcgcgta tgcggcaaag tgcggacatt ttgcacctgc
    22741 cccgccccga aaccgaagct tatctcgatg ctttggtcga actggtcaaa cgtgccgccg
    22801 acgaaattcc cgatgcacct tccgcgctgt acctgcgccc gaccttaatc ggtaccgatc
    22861 ccgtcatcgg caaggccggt tctccttccg aaaccgctct gctttatatc ctcgcctccc
    22921 ccgtcggcga ctatttcaaa gtcggctcgc ccgtcaaaat tttggtggaa accgaacaca
    22981 tccgctgcgc cccgcatatg ggacgcgtca aatgcggcgg caactacgct tccgccatgc
    23041 actgggtgct gaaggcgaaa gccgaatacg gcgcaaatca agtcctcttc tgcccgaacg
    23101 gcgacgtgca ggaaaccggc gcgtccaact ttatcctgat taacggcgat gaaatcatta
    23161 ccaaaccgct gaccgacgag tttttgcacg gcgtaacccg cgattccgta ctgacggttg
    23221 ccaaagattt gggctatacc gtcagcgaac gtaatttcac ggttgacgag ctcaaagctg
    23281 cggtagaaaa cggtgcagaa gcgattctga ccggtacggc agccgtcatc tcgcccgtta
    23341 cttccttcgt catcggcggc aaagaaatcg aagtgaagag ccaagaacgc ggctatgcca
    23401 tccgtaaggc gattaccgac atccagtatg gtttggcgga agacaaatac ggctggctgg
    23461 ttgaagtgtg ctgatgcttt aaataaaaaa aatgccgtct gaaacccgtt tggcgtttca
    23521 gacggcattt tcgcgttcgg accatttccg ctgcacctgc agcaagtcgg gcatttccct
    23581 agaaatacgc ttcagacggc aaaccgccgc ccgaaaccga tacgcggtac ggacggcgca
    23641 cggatttgaa aacggcggat tatccctcgg tgctcaaggc attaatgctg taaccgccgt
    23701 caacgtaagt gatttcgccg gtaatgccgg acgacaggtc ggacagcagg aaggcggcgg
    23761 tattgccgac ttcttcgatg gtaacgttgc ggcggagcgg attgtgggcg gcgacgtgtc
    23821 ccaagagttt gccgaaatcg gcgatgccgg aggcggcaag cgttttgatc gggcctgcgg
    23881 aaatgccgtt gcagcggatg ccttctttgc ccagacaggc ggcggtaaaa cggatgcccg
    23941 cctcaaggct ggcttttgcc atacccatca cgttgtaatt cggaatcgcg cgcaccgcgc
    24001 ccaagtagct cagggcaacg atggcggagt ttctgccgcg catcatcgga cgggcggctt
    24061 ttgccaatgc gggcaggctg tatgcggaaa tttcgtgtgc ggtgttgaac gcttcgcggc
    24121 tgatgctgtc gaggaagtcg ccgctcaagg cttctttcgg cgcaaaaccg atggaatgca
    24181 ccaaaccgtc caagccgtcc caatgtttgc ccaaatcggc gaacacttgg ttgatttcgt
    24241 cgtcgctggc gacatcgcag cggaacacga gttcggaatc caattccgcc gccattttgc
    24301 ggacgcgctc ttccagtttg tccacaacgt aggtaaacgc cagttccgcg ccttgttcgc
    24361 ggcaggcttt ggcgatgccg taagcgatgg aacgctcgga aatcatgccg gtaatcagaa
    24421 tttttttgcc ttgcagaaaa cccattttgt atccttcaaa tagtgttcgg ttcgttctaa
    24481 accgttgatt atagcaaatt gtccctgttt ctgtgttttc acgttgcagc atgcaaacgg
    24541 caatgccgtc cgaagcggat ttcagacggc atcggacgtt tcaaatacgg tttaaggcat
    24601 cagatgccgc gcaacaattc gttcacgctg gttttcgcac gggtttgcgc gtccacgcgt
    24661 ttgacgatga cggcgcagta aaggctgtgg ctgccgtctt tggaaggcat actgccggac
    24721 acgacgaccg aacctgtcgg tacgcggcct tggtagattt cgccggtggt gcggtcgaag
    24781 attttggtgg attgaccgat gaacacgccc atcgaaatca cgctgccttc ttcgacaatc
    24841 acgccctcaa cgatttcaga acgcgcaccg atgaagcagt tgtcttcaat gatggtgggg
    24901 gcggcctgca ggggttcgag tacgccgccg ataccgacgc cgccactcaa gtgcacgttt
    24961 ttaccgattt gcgcgcaaga gccgacagtc gcccaagtat caaccatcgc gccttcgtcg
    25021 acgtatgcgc cgatgttgac gtaagacggc atcagcacga catttttcgc cacaaagctg
    25081 ccgcgtcggg caaccgcacc cggaacggcg cggaagcctg cgtttttgaa ctcgtcttca
    25141 gaccagtcgg caaacttggt cggcactttg tcgaagtatt tgttcacgcc gtcgttgagg
    25201 acttcgttgt cttggatgcg gaaggacagc aacacggctt ttttcgccca ttcgttgact
    25261 ttccactcac ccacgcccaa gcgttcggca acgcgcagtt tgccggaatc gagttggcgg
    25321 atggtttcca acacggcttc tttgacttcg ggagtaacgg tggtcggggt gatgtccgcg
    25381 cggttttcaa aggcggtttc gatgatgttt tgcaaagaca taatgtttcc ttatgtgaga
    25441 tgtttcgtgg gacgcttgcc ggtattttcg ggcagtatgt tcatttgaaa tgaatgcgct
    25501 attgtgccac gcaaacgcat attcgtcagc aatacgcagg cggttgccga acattggcgt
    25561 ttcggaatcg ggcgggcggc aggtattgcc ttttccgcgc ccgaatcaat acagaaaggc
    25621 ggcagtactt ttatgccgcg ccgccgcctt tcagacggca ttcgcggtaa aacgccatca
    25681 gcccttcggt cgaggcatcg tgtacggacg tgccgccttc cagttcgccg atgatggttt
    25741 ttgccaactg tttgccgtat tccacccccc actgatcgaa ggggttgacg ttccatatcg
    25801 tgccttggac gaaggttttg tgttcgtaag ccgccatcag catacccaga ttgtagggcg
    25861 tgaggcggtc gagcaggatg ctgttactgg ggcggttgcc ggggaactct ttgtgcggcg
    25921 cgaggcgttc gcgttccgct tcgggcaaat ctgccaattc ggcgcgtgct tcgtccaagg
    25981 ttttgccctt catcagggct tccgcttggg caaaggcgtt ggcaacggta aaacggctgc
    26041 gtccgtcctc cacgccctgc gccgtcatcg ggacgataaa gtcgcaggga atcaggcgcg
    26101 tgccttgatg aagcagttgg aaataggcgt gctggcagtt gaccccttca ccgccgaaca
    26161 cgatgccgcc cgttttgcac acggcgggac tgccgtctga agcgcggctt ttgcccaaac
    26221 tctccatatc gagctggttc agccacaccg gcagcaggcg caggttgtgg ctgtacggaa
    26281 cggcggtctg cccgtccgcg tgttggaaat tgttatacca cacggcaatc agtgccatca
    26341 gaacgggaat gttgcggcgc ggcggcgtgt ggaaaaaatg gctgtccatc gcgtgcgccc
    26401 ccgccaacaa ctcgcggaaa cgcgccccgc cgaccgcaac catcacgggc aaaccgacgg
    26461 acgaccagac ggaatagcgt ccgcccaccc agtcgtacat cgcaaacacg cgttccgccg
    26521 cgataccgaa agccgcagct gccgcagtgt cggcagacac cgcgcaaaaa tggcacgccg
    26581 tttcggattc cgagaacccc gcaccgcgat accacgcctt gactgcctgt gcattgagca
    26641 gggtttccgg tgttttgaag gacttgctgg caacgcaaaa cactgtcgtt tcggggttca
    26701 gacggcataa aaccgcatcc aggcaggcag gatcggcgtt ggcggcaaaa tggacggcga
    26761 tatgccgtct gaacggctcg agtgcctgaa cgcacattgc cggcccgagg tcggatccgc
    26821 ctatgccgat gtggacaaaa tccgtaatcc gtttcccagt tatcccctga tacgaaccgt
    26881 cgtccaaact gtgtgcaaac tccaacgcac gatttaactc gcggcggatt tcgggcaaca
    26941 cgtccctgcc gtccacataa acggcatccg caccgtcggg caggcgcaaa gccgtatgca
    27001 gcgcggcacg cccctcgctg ccgttgactt tcgcacccgt ccgcaaagca cgcattttcc
    27061 cttccaaatc cgccgtctcc gcaagacggc agagcagttg cagcgtatct tcgcccaaac
    27121 ggtttttgct gtaatcgaac aacatcccgt ccaaacgctc atgcatacgc tcaaaacggt
    27181 cgggttcgca ggcaaagcgg tcgcgcaaaa ggacatgacg cgtatcctga taatggcgtt
    27241 cgagcgcata ccatgcacgg gtaaaagcat tcatctgttt tccttgattt ttcagaaccg
    27301 gattaaaatg tagcagaatg tagtttaaca aacggcagcg gctttggcga atctccggaa
    27361 caccgcccgc cgcgtccaat agcaccttat ttccatatgg cgaaaatata gtgaattaac
    27421 aaaaatcagg acaaggcggc gagccgcaga cagtacaaat agtatggaac cgattcactt
    27481 ggtgcttcag caccttagag aatcgttctc tcttgagcta aggcgagcca acgctgtacc
    27541 ggtttttgtt aattcactat accctccggc cgacatttga cccgcaacaa tatcctgcaa
    27601 gatttattgt gtacgcataa atgccggaca gccgcctaaa taaggtataa tcgcatccga
    27661 ttctgtcccg tttgccgccc gcaggcggga tgtcggcggt tttcatctta ccgggaacac
    27721 gccggtactg ttttttaacg atgtttctta cattttattc caattacttt acggggctag
    27781 aatatggcta aaaacggagg attttctttg ttcgcaaaga aagaaaaacg ctttatcttt
    27841 gaaggcaggc attccgcctc cgacaaactg gtcaacggcg aagtatccgc gtttaccgaa
    27901 gaagaggcgc gcaaaaaact ggcaaaacgc ggcatccgcc cgttgcagat tacccgtgtg
    27961 aaaacaagct ccaagcgcaa aatcacacaa gaagacatca ccgttttcac ccgccagctg
    28021 tccacgatga ttaaagcggg cctgccgctg atgcaggcat ttgaaatcgt ggcgcgcgga
    28081 cacggcaacc cgtctatgac ggaaatgctg atggaaatcc gaggcgaagt ggaacagggc
    28141 agctcgttga gccgcgcatt ctcaaaccac ccgaaatatt tcgaccgctt ctactgcaac
    28201 ctggttgcgg caggcgaaac gggcggcgta ttggaaagcc tgctggacaa attggcaatt
    28261 tacaaagaaa aaacccaggc catccgcaaa aaggtaaaaa ccgcactgac ctatccggta
    28321 tccgtcatcg ccgtcgccat cggtttggta ttcgtgatga tgattttcgt actgcccgcc
    28381 tttaaagaag tttacgccaa tatgggcgcg gagcttcccg cactgaccca aacagtgatg
    28441 gatatgtccg actttttcgt ctcatacggc tggatggtgc tgatcgcact gggctttgcc
    28501 atatacggct tccttaaatt gaaggcgcgt tcgattaaaa tccaacggcg tatggatgcc
    28561 atactgctgc gtatgccgat tttcggagac attgtccgca aagggacgat tgcccgctgg
    28621 ggcaggacga cagcgacgct gattgcggca ggcgtgcctt tggtcgatgt attggactcc
    28681 actgccggcg cggcgggcaa tttaatctat gaagaagcca cccgggaaat ccgtacgcgc
    28741 gtcatccaag gtttgtctat gacttcgggg atgcgtgcga cggaactgtt ccccaatatg
    28801 atgttgcaga tgtcttccat cggcgaggaa tcgggttctt tggacgatat gctcaacaaa
    28861 gccgccgaat tttacgaaga cgaggtggac aatgcggtcg gcaggctgtc cgctatgatg
    28921 gagccgatca ttatcgtgat tttaggcttg gtcatcggca cgcttctggt cgccatgtat
    28981 ctgccgctgt ttaatttggg caacgtggtc gcctgatttg ccgcacagat ccggcgcgga
    29041 ttcgctctgc gccggtttgt ttttgttttg aatacattga gaacaaaata tgtctgattt
    29101 gtctgtattg tcgccgtttg ccgtgccttt ggcagcggtg ttcgggctgc tggtcggcag
    29161 tttcttaaac gtcgtcattt accgcgtgcc ggtcatgatg gaacgcggct ggacggtatt
    29221 tgccaaaaaa catttaaacc tgccgctgac cgaaaaggaa agccgtacct tcaacctgat
    29281 gaaaccggat tcctgctgtc ccaaatgccg cgtgccgata cgcgcgtggc agaacatccc
    29341 gattgtcagc tacctgctcc tgcgcggcaa atgcgcttcc tgccaaacca aaatcagcat
    29401 acgttatccc ttaatcgagc tgctgaccgg cgtattattc gggctggtcg cctggcaata
    29461 cggctggtct tggattacat tgggcggttt gatactgacc gcgtttctga tttccctgac
    29521 ctttatcgat gcggacaccc aatacctgcc cgactcgatg acactgccct tgatttggct
    29581 ggggctgata tttaatttgg acggcggctt cgtgcctttg cagtctgccg ttttaggtgc
    29641 ggttgccggc tatggttcga tatggctttt atgcgcggta tataaactga ttaaaggcga
    29701 aatcggtatg ggcaacggag atttcaaact gattgccgca ttgggcgcgt ggctcggcat
    29761 atccgcattg cccgtgctga tttttgtttc ctcgctgatc ggtttggtcg cggcaatcgt
    29821 tatgcgcgtc gccaaggggc agcattttgc cttcggcccc gcactgacag tttcgggctg
    29881 gataattttt acggcaaacg attccgtatg gcgggcggtc aactggtggc tgacccatcc
    29941 ggtgctgtaa gatgacggta tgggtcgggc tgaccggcgg aatcggcagc ggcaaatcgg
    30001 cagccgcgca atgttttgcc gatttgggcg tgccgcgcat cgatgcggac gcggcggcgc
    30061 actcgctgac ggcttcagac ggcatcgccc tgccggaaat caggcggctg ttcggcgaca
    30121 ccgtttttga cacacagggt ttgttgcggc gcgacatatt gcgtaaagaa gtctttgcct
    30181 ccccatcgcg aaaagccttg ctcgaatccg tgatgttgcc gctgattttc tcagaaatca
    30241 aaaaacagca agaaaccttt accgatgcgg tttacggcat tgtcgaaatt ccgctgctga
    30301 cggaaaagcg tcaatttgtc agcctgatac ggcgtgtcct gaccataagc gcacctttgg
    30361 aaaaacgtat cggcagggtg atggcccgca gcgggctgac gcgcggcgag gtggcggaca
    30421 tcatcagcca tcaggcatcc gaatccgaac gcctgctgct tgcagacgat gtgctgctca
    30481 atgacggcag cctcaaaagc ctgtgtgaga aaacaatgcg cctgcacgcg ttttattcag
    30541 ggattttcgc ctcaaaacca acacaaggaa aacacaatga ctgaatcgcg gcaaacacgc
    30601 cttcaagtca aatgtccgac ctgtcaaacg gcagtagtat ggaaaccgga aaacgcattc
    30661 cgccccttct gttcgcaacg ctgcaaactg atcgacttgg gcggatgggc agacgggaaa
    30721 tatacggttt ccagccaaac ggaaagtttg ccggaaatat ccgaacccga catggcatac
    30781 cgctgaccgc cccgccttcc cggcaaacac cctgaaagtc aaatgccgtc tgaaacaaac
    30841 acgcttcaga cggcattttc attctcaaac ctaatcgttg gtatttgccg ttacctcttc
    30901 caatgaagta atgccctgca taactttcaa aataccggcc cggcgcaaat ccaccatacc
    30961 ctccttatag gcaacgtcca aaatatccac ttccgtaccg ttgttcataa tcacacgctg
    31021 catttcttcg ctgatgggca taacctcata cacgcccgca cgccccttat aaccctgccc
    31081 ccggcaacgg tcgcaaccga cggcgcggta aagtttccaa tcttttgcaa ggtcctcatc
    31141 ggtgaagccg acttccttca aagcagaggc agacgggcgt tccacttcct gtttgcagct
    31201 cgaacacagc ctgcgtaaaa gacgctgcgc cataatcagg ctgaccgaac tggcaatatt
    31261 aaacggcgcg acacccatat tcagcatacg cgacaacgtc gccggcgcat tattggtgtg
    31321 cagggtggaa aacaccatat gccctgtttg tgccgcctta atcgcaatat cggcagtttc
    31381 caaatcacga atctcaccga ccataatgat gtccgggtcc tgacgcagga aagacttcaa
    31441 agcagcggca aaagtcaggc cctgcttatc attgacgtta acctgattga tgcccggcag
    31501 gttaatctcg gcagggtctt ccgccgttgc aatatttacc gactccgtat tcaaaatatt
    31561 caaacaggta tagagcgaca ccgtcttacc cgaacccgtc ggaccggtta ccagcaccat
    31621 cccgtaggga cggtgaatcg cttccaacaa caattttttc tgaaacggct caaaaccgag
    31681 ctggtcgatg ttcaaagacg cggcatcgga attcaaaatc cgcatcacga ccttttcgcc
    31741 aaacagcgtc ggcaatgtgc tgacacggaa atcgacaggc ttgccgccct tttgaaaggt
    31801 cagctgcatc ctgccgtcct gcggtatccg tttttcggaa atgtccaaac gcgacattac
    31861 cttaatccgg gaagcaagct gcccccttac cgcaatgggc ggctgaacca cctcgcggag
    31921 ctgcccgtcc acacggaaac ggatacgggc attgtgttcg taaaactcga aatggatgtc
    31981 cgatgccccg ctgcgcaagg catccgacaa agtcttatgg ataaacctcg gaacagggcc
    32041 gtcttctgcc tcctcgttgt cgatatacag ggtgtggctt tcctcttcct cctgcccctc
    32101 cccaagctcc tgaagcagcg atgtcgaacg cgaacccacc caatcgagca aacccgccaa
    32161 ctggtcatcc tcgacaatga ccaactcaac ctcaatccct gcggcagaaa cggttttctg
    32221 aatttgcggc atctgtgtcg gatcggaaac cgcaaaaaat actttgtcgc cccgacggaa
    32281 aaccggcaca cagtggaact ccaccatctg ctcctccgtc aacaccccca tcagcaccct
    32341 gtggcgcgga taatgacgca aatcaagaat cgaataactg aacaccctcg caatcaatgc
    32401 cgcaagcgac ttgggcgaaa tgacaccgtc tgaaaacagc atcggcaaca cttccttacc
    32461 cgcctgcgac tcattgtagt aatgctcggc ctgctcaaca gtaaccacct ggttttgaac
    32521 cagaatcctc agcaaaccta cgctcatacg accttatccc caaatttatt cattgttata
    32581 cctgtacagc tttt
//
LOCUS       DAXIFS010000005        28306 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.005, whole genome shotgun sequence.
ACCESSION   DAXIFS010000005 DAXIFS010000000
VERSION     DAXIFS010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 28306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28306
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.005"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            316..684
                     /locus_tag="ACFOCA_000197"
     CDS             316..684
                     /locus_tag="ACFOCA_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6986976.1"
                     /translation="MRIFKNQWIVKFAKKHKISDSELLEAVERADNGLIDADLGGGVI
                     KQRIARQGQGRSGGYRSLILFKQADRAFFVYAFAKNDRENISDKELDVYRKAAAYYLK
                     YTRAELAALKEDGIITEIES"
     gene            681..992
                     /locus_tag="ACFOCA_000198"
     CDS             681..992
                     /locus_tag="ACFOCA_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6986977.1"
                     /translation="MKYKSEALAAIHEMMEGAYNIGAIDKKTMRGFDKSCLTEIKPLS
                     GGDIKAIREKEALSQAAFAIYLNVGKNHVSAWERGVKKPSGAALKLLTIVKNKGIEAI
                     A"
     gene            complement(1762..2316)
                     /locus_tag="ACFOCA_000199"
     CDS             complement(1762..2316)
                     /locus_tag="ACFOCA_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986978.1"
                     /translation="MIIGGIGGARTQTGLRFEERTDLRTLFEEIPGYDLRKTYDNAGY
                     EVWFNGELKAYCFKKYEFYRFLKRPGYNINWKDHLSKRLLPDNGLFIIIRDTLFIIEI
                     KFQQTPGSVDEKLQTCDFKRKQYTKLVHSLGWRVEYVYVLNDWFTKPEYKDVLDYIIS
                     VNCHYQFNTIPLRWFGLPDGETNE"
     gene            complement(2313..3122)
                     /locus_tag="ACFOCA_000200"
     CDS             complement(2313..3122)
                     /locus_tag="ACFOCA_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6986979.1"
                     /translation="MIDFDKPAEEDAIYQSRLKKIVSDDLVLYNENSLNVMRKILEKY
                     PNGCFDMIFSDPPYFLSNDGFSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLRLCYA
                     LLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTETI
                     LWAKKNKKAKHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGKHPTQKPLPLLERC
                     ILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRLEK"
     gene            complement(3115..3927)
                     /locus_tag="ACFOCA_000201"
     CDS             complement(3115..3927)
                     /locus_tag="ACFOCA_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFC6986980.1"
                     /translation="MASKPFLKWAGGKHKLVPFIEHNLPTPTRKRLIEPFCGSAALSL
                     ALDFEHYLLNDINADLIGLFRILKEEKSGFIDYARSFFISENNSDSRFYELREQFNFS
                     KNLHERSALFIYLNRHAFNGLCRYNSKGVFNVPFGRYKSPYFPQQEMEGFIQKSDRVE
                     LMCGDFQMILSQTDNTDTVYCDPPYAPLSPTASFTTYAKESFNLDNQIRLAQSAQQIA
                     PDSQGVLISNHDTEFTRDIYSFAILKTIEVQRNIAAKGSSRKKVGELLAIYD"
     gene            complement(4165..6795)
                     /gene="leuS"
                     /locus_tag="ACFOCA_000202"
     CDS             complement(4165..6795)
                     /gene="leuS"
                     /locus_tag="ACFOCA_000202"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFC6986981.1"
                     /translation="MQEHYQPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYP
                     SGKLHMGHVRNYTIGDVLSRFKLLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTY
                     DNIEYMKTQLKSLGFAIDWARETATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKT
                     MQRNWIGKSRGMTVRFAVSDDSKQGLEGDYAKLLQVYTTRPDTLMGATYVAVAAEHPL
                     AAAAAADKPELQAFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANY
                     VLWGYGDGAVMAVPAHDERDFEFAAKYNLPKKQVIAVGDNAFDANRWQEWYADKENGV
                     LVNSGDLDGLDFQTAFDAVAAKLQSQGAGEPKTQYRLRDWGISRQRYWGCPIPIVHCE
                     QCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETACPCCGGAAKRETDTMDTFM
                     ESSWYFFRYMSPKFSDGMVDPAAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEG
                     LVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPISAVLKADG
                     LPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAH
                     RFLRRLWRTVYEYLKQGEAVKAFAGSQDGLSKELKDLRHKLHATTAKVSDDYGRRQQF
                     NTAIAAVMELLNQYDKTDTGGEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNGAK
                     LWEAGWPTVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEAAALATEGAVKFM
                     EGKPAKKIIVVPGRLVNIVV"
     gene            7062..7577
                     /locus_tag="ACFOCA_000203"
     CDS             7062..7577
                     /locus_tag="ACFOCA_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6986982.1"
                     /translation="MKIKQIVKPGLAVLAAGVLSACATKSNVKADGTTDNPVFPKPYS
                     VTLDNNRGTFPTYDELDLMRPGLTKDDIYKILGRPHYDEGMYGVREWDYLFHFHTPGV
                     GIDPENTSGVEGITTCQYKIIFDKDKFARSFYWNPVFPKDAACPPPAPKAEPQVIIRE
                     IVPAKPKRIRQ"
     gene            7584..8027
                     /locus_tag="ACFOCA_000204"
     CDS             7584..8027
                     /locus_tag="ACFOCA_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HFC6986983.1"
                     /translation="MPFRLFLGILCGLSMVAPVYAQGQPDAVNAYIQKKKVIVNTSKA
                     ELCFADDRQCHPVLIGVATPKGTFGLTLNSTDKPGYGGEVIGFKQEGDFLFALHRVWN
                     QIPSERRNERIASPSVSDRIMTNGCINVSDAVYEKLRHYFVLEVI"
     gene            8196..10253
                     /gene="ppk1"
                     /locus_tag="ACFOCA_000205"
     CDS             8196..10253
                     /gene="ppk1"
                     /locus_tag="ACFOCA_000205"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HFC6986984.1"
                     /translation="MPEQNRILCRELSLLAFNRRVLAQAEDKNVPLLERLRFLCIVSS
                     NLDEFFEVRMAWLKRENKLHPRRRLDNGKMPSETIADVTEAARSLIRHQYDLFNNVLQ
                     PELARESIHFYRRRNWTGTQKKWIEDYFDRELLPILTPIGLDPSHPFPRPLNKSLNFA
                     VELDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGFVFLSSILHAHVGKLFPG
                     MNVKGCHQFRLTRDSDLTVDEEDLQNLRAAIQNELHDREYGDGVRLEVADTCPAYIRD
                     FLLAQFKLTAAELYQVKGPVNLVRLNAVPDLVNRPDLKFPTHTPGRLKALGKTASIFD
                     LVRQSPILLHHPYQSFDPVVEMMREAAADPDVLAVKMTIYRTGTRSELVRALMKAALA
                     GKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKVHAKMALVIRREDGVLK
                     RYAHLGTGNYHQGTSRIYTDFGIITADEQITADVNTLFMEITGLGKPGRLNKLYQSPF
                     TLHKMVIDRIARETEHAKAGKPARITAKMNSLIEPTVIEALYRASAAGVQIDLIVRGM
                     CTLRPGVKGLSENIRVRSIIGRQLEHARVYCFHNNGADDTFISSADWMGRNFFRRIET
                     AAPIAAPELKKRVIREGLEMALADNTHAWLMQPDGGYIRAAPAEGESEADLQNDLWTL
                     LGG"
     gene            10278..10547
                     /locus_tag="ACFOCA_000206"
     CDS             10278..10547
                     /locus_tag="ACFOCA_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986985.1"
                     /translation="MPSETFPFQTAWFYSNLNRADWNQKHTFAIPAQALPLYAPNPNP
                     PHSRRHCLSDSRTKPRIRLHGSGHISNTGIVLRKTVKSASASQYI"
     gene            complement(10516..11619)
                     /gene="dnaN"
                     /locus_tag="ACFOCA_000207"
     CDS             complement(10516..11619)
                     /gene="dnaN"
                     /locus_tag="ACFOCA_000207"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFC6986986.1"
                     /translation="MLILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTK
                     LLATDLEIQIDTAGPEGGADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAG
                     KSRFALQTLPAADFPMMNVGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLL
                     MQVEGSQLRLVATDGHRLAYAACAIDADLPRAEVILPRKTVLELFKLLNNPDDPIQIE
                     LLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILAN
                     EKFRGARLFLQSGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS
                     DDMQLAFGDANRSTLFTVPNNPNFKYIVMPMRI"
     gene            complement(11699..13255)
                     /gene="dnaA"
                     /locus_tag="ACFOCA_000208"
     CDS             complement(11699..13255)
                     /gene="dnaA"
                     /locus_tag="ACFOCA_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFC6986987.1"
                     /translation="MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGK
                     NQFACNMLKSQFAGKIEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHA
                     GSEEMPVQEVLLDELPSEEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEV
                     LAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPF
                     FLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQY
                     KQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKS
                     RFSWGLTLELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNR
                     VGASSRFMNRPVIDIDLARTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKR
                     TRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQD
                     YEKLLILIQN"
     gene            13548..13682
                     /gene="rpmH"
                     /locus_tag="ACFOCA_000209"
     CDS             13548..13682
                     /gene="rpmH"
                     /locus_tag="ACFOCA_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003816025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFC6986988.1"
                     /translation="MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLAV
                     "
     gene            13685..14050
                     /gene="rnpA"
                     /locus_tag="ACFOCA_000210"
     CDS             13685..14050
                     /gene="rnpA"
                     /locus_tag="ACFOCA_000210"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFC6986989.1"
                     /translation="MDYRFGRQYRLLKTDDFSSVFAFRNRRSRDLLQVSRSNGNGLDH
                     PRIGLVVGKKTAKRANERNYMKRVIRDWFRLNKNRLPPQDFVVRVHRKFDRSTAKQAR
                     AELAQLMFGNPATGCRKQA"
     gene            14115..14336
                     /gene="yidD"
                     /locus_tag="ACFOCA_000211"
     CDS             14115..14336
                     /gene="yidD"
                     /locus_tag="ACFOCA_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFC6986990.1"
                     /translation="MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKK
                     YGAFKGGRLAIKRIARCHPLGGHGHDPVP"
     gene            14508..16145
                     /gene="yidC"
                     /locus_tag="ACFOCA_000212"
     CDS             14508..16145
                     /gene="yidC"
                     /locus_tag="ACFOCA_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFC6986991.1"
                     /translation="MDFKRLTAFFAIALVIMIGWEKMFPTPKPVPAPQQAAQQQAVTA
                     SAEAALAPATPITVTTDTVQAVIDEKSGDLRRLTLLKYKATGDENKPFILFGDGKEYT
                     YVAQSELLDAQGNNILKGIGFSAPKKQYSLEGDKVEVRLSAPETRGLKIDKVYTFTKG
                     SYLVNVRFDIANGSGQTANLSADYRIVRDHSEPEGQGYFTHSYVGPVVYTPEGNFQKV
                     SFSDLDDDAKSGKSEAEYIRKTPTGWLGMIEHHFMSTWILQPKGRQSVCAAGECNIDI
                     KRRNDKLYSTSVSVPLAAIQNGAKAEASINLYAGPQTTSVIANIADNLQLAKDYGKVH
                     WFASPLFWLLNQLHNIIGNWGWAIIVLTIIVKAVLYPLTNASYRSMAKMRAAAPKLQA
                     IKEKYGDDRMAQQQAMMQLYTDEKINPLGGCLPMLLQIPVFIGLYWALFASVELRQAP
                     WLGWITDLSRADPYYILPIIMAATMFAQTYLNPPPTDPMQAKMMKIMPLVFSVMFFFF
                     PAGLVLYWVVNNLLTIAQQWHINRSIEKQRAQGEVVS"
     gene            complement(16226..16936)
                     /locus_tag="ACFOCA_000213"
     CDS             complement(16226..16936)
                     /locus_tag="ACFOCA_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFC6986992.1"
                     /translation="MSPVLYLIPTPLGTPDTPCLLPHEQQAIVGLTDFVVEAEKTARA
                     HLKHLGVTTPIRELNLQTLNEHTDLKTLPELLKPLQEGRSMGIVSEAGCPAVADPGAN
                     LVALAHKHGFEVRPLVGPSSLLLALMASGANGQSFAFKGYLPSEKNERIQAFRALEQR
                     SRQCGETQIFIETPYRNDALLADAVENLHPETRLCTATDLTLPTQEIISQTIVQWRKR
                     KEMPNLKKRPTIFVMYAG"
     gene            complement(16998..17588)
                     /locus_tag="ACFOCA_000214"
     CDS             complement(16998..17588)
                     /locus_tag="ACFOCA_000214"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HFC6986993.1"
                     /translation="MGLELPLILGTSSVFRREQMERLGIAFQAASPDFDETPMLGESA
                     PQTALRLAEGKARSLTGRFPEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGRE
                     IEFYSAIVLLNTVTGRMRRHIDKTVVVMRQLDELHILRYLEREPDAVYCSCALKSEDL
                     GALLIERIESTDPNALIGLPVFRLVDFLKNEGVEVL"
     gene            17736..18239
                     /locus_tag="ACFOCA_000215"
     CDS             17736..18239
                     /locus_tag="ACFOCA_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HFC6986994.1"
                     /translation="MSDPNLIDLEIFAAEGQNLQGSFLLEELDERVSSHDYPADRQTK
                     ISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEESLDES
                     MLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDCGDNGTLEEVNRDKPNPFAV
                     LAGLKSN"
     gene            18273..18452
                     /gene="rpmF"
                     /locus_tag="ACFOCA_000216"
     CDS             18273..18452
                     /gene="rpmF"
                     /locus_tag="ACFOCA_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011765354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFC6986995.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDALTAPALSVDSTTGEVHRPHHISP
                     NGMYRGRKVVKAKGE"
     gene            18627..19154
                     /locus_tag="ACFOCA_000217"
     CDS             18627..19154
                     /locus_tag="ACFOCA_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFC6986996.1"
                     /translation="MKQKIWYTYDDIHRVIKALAEKIRNADIKYDAMIAIGGGGFIPA
                     RMLRCFLEIPIYAVTTAYYDSDNEGQVTEEVKKVQWLDPVPEALRGKNVLVVDEVDDS
                     RVTMEFCLTELLKEDFGTIGVAVLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDA
                     LDIDEHNRLAEAGRG"
     gene            19242..20297
                     /gene="plsX"
                     /locus_tag="ACFOCA_000218"
     CDS             19242..20297
                     /gene="plsX"
                     /locus_tag="ACFOCA_000218"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFC6986997.1"
                     /translation="MITLAVDAMGGDQGLAVTVPGATAFLQAHPDVRLIMTGDETQLR
                     QALTAAGAPMERIDICHTTQVVGMDESPQSALKNKKDSSMRVAINQVKEGKAQAAVSA
                     GNTGALMATARFVLKTIPGIERPAIAKFLPSDTDHVTLALDLGANVDCTPEQLAQFAV
                     IGSELVHALHPQKGQPRVGLVNVGTEDIKGTDTVKQTYKLLQNSKLNFIGNIESNGIL
                     YGEADVVVADGFVGNVMLKTIEGAVKFMSGAIRREFQSNLFNKLAAVAALPALKGLKN
                     KLDPRKFNGAILLGLRGIVIKSHGGTDETGFRYALEEAYHEAKSAGLSKIEQGVAEQL
                     AALETAKAVQNENADGL"
     gene            20433..20684
                     /locus_tag="ACFOCA_000219"
     CDS             20433..20684
                     /locus_tag="ACFOCA_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6986998.1"
                     /translation="MKTLEKRMKALDKQMMKFGKSLEGRLDARLIESALDYIHYSERF
                     LAFEILCTYIEDFDVRLTEQESREISFINKEFEIESTSD"
     gene            20711..21127
                     /locus_tag="ACFOCA_000220"
     CDS             20711..21127
                     /locus_tag="ACFOCA_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6986999.1"
                     /translation="MKTSTVVFGGFFMADNGERIQIPVLENPDIREINHFFSVSNFEK
                     KTGVLVFRIIPEPEFGNTELTVYFEKGYYLPMIQTILEGGDIEVKNLKTENYSGNTME
                     IWGDSYPIEHISKNISTIQNIISEFMIQKQTPAPII"
     gene            21147..21350
                     /locus_tag="ACFOCA_000221"
     CDS             21147..21350
                     /locus_tag="ACFOCA_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987000.1"
                     /translation="MPSEACLVFRRHFLRLKQRIGNPALPVHGNLHLKTICIPNHTPI
                     PVSVICTLPVLGNHRFFAYNSRI"
     gene            21377..22339
                     /locus_tag="ACFOCA_000222"
     CDS             21377..22339
                     /locus_tag="ACFOCA_000222"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFC6987001.1"
                     /translation="MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRH
                     IAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGIT
                     NGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFG
                     DGAGAVVLSAADKPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKF
                     AVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHG
                     NTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY"
     gene            22386..22757
                     /locus_tag="ACFOCA_000223"
     CDS             22386..22757
                     /locus_tag="ACFOCA_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HFC6987002.1"
                     /translation="MKRQAFFKPIACAAFLSAISLRLPVLGACYAILSLYAFALYGID
                     KRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLA
                     TLILIDYFVPPELFVKLGQHL"
     gene            22783..23709
                     /gene="fabD"
                     /locus_tag="ACFOCA_000224"
     CDS             22783..23709
                     /gene="fabD"
                     /locus_tag="ACFOCA_000224"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFC6987003.1"
                     /translation="MSFAFFFPGQGSQSLGMMNGFTGQAVVKNTFDEASAILGQDLWA
                     MINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGA
                     LDFADAVKLVRLRAELMQSAVPQGVGAMAAILGLEDEQVKQICAEAAQGEVVEAVNFN
                     SPGQIVIAGNAAAVGRAMAAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVE
                     IKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPG
                     KVLAGLAKRINKAAACSALTDAGQVAAFIEAH"
     gene            23848..25713
                     /gene="msbA"
                     /locus_tag="ACFOCA_000225"
     CDS             23848..25713
                     /gene="msbA"
                     /locus_tag="ACFOCA_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HFC6987004.1"
                     /translation="MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIVAALIAIFGVAA
                     TESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVP
                     LFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLM
                     NMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRY
                     YRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSK
                     KITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKS
                     LANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKA
                     LDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLR
                     AQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIG
                     SNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGI
                     IVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA"
     gene            25813..27378
                     /gene="guaA"
                     /locus_tag="ACFOCA_000226"
     CDS             25813..27378
                     /gene="guaA"
                     /locus_tag="ACFOCA_000226"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFC6987005.1"
                     /translation="MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKA
                     FNPKGIILSGGPNSVYESDYQADTGIFDLGIPILGICYGMQFMAHHLGGEVQPGNQRE
                     FGYAQVKTIDSELTRGIQDDTPNTLDVWMSHGDKVSKLPTGFTVIGDTPSCPIAMMEN
                     AEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPSWTMPNYIEEAVAKIREQVGSD
                     EVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVI
                     HVDAEGQFMEKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIES
                     AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHP
                     FPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPV
                     KSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVY
                     DVSGKPPATIEWE"
     gene            27440..28186
                     /gene="fabG"
                     /locus_tag="ACFOCA_000227"
     CDS             27440..28186
                     /gene="fabG"
                     /locus_tag="ACFOCA_000227"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFC6987006.1"
                     /translation="MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESG
                     AAAISERLAQWGGEGRVLNSAEPETVENLIADIEKTFGKLDILVNNAGITRDNLLMRM
                     KEEEWDDIMQVNLKSVFRASKAVLRGMMKQRAGRIINITSVVGVMGNAGQTNYAAAKA
                     GLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQTFTAQTALGRFGDAQD
                     IADAVLFLASDQAKYITGQTLHVNGGMLMP"
BASE COUNT         7040 a         8125 c         6934 g         6207 t
ORIGIN      
        1 ttttggggtt ttccggtttt tcaccgtctt ggcagtggga gcgtagcgga atgaaaagcc
       61 aaaacgcacg gaaccgcgcc tattttgagc aggaatggcg gttaaaccgc ttggttatat
      121 acggggaata ggaagacagc gaaacgcgct aaaaacgcaa tttgagccat taaaagcgat
      181 tgattaaaaa ataatcaggt tagccgccag tgtttcaggc ggcataaacg gagaaattgc
      241 agggtataaa aaggcggctt gccgtgttgt ctgtctctgg tataattcca agtatcacta
      301 atcaacggct acacaatgcg gatattcaaa aaccaatgga tagtgaaatt tgccaagaaa
      361 cataaaatca gtgattccga gctgctggaa gcggtagagc gggcggataa cgggctgata
      421 gacgcagatt taggcggcgg tgtgattaag cagcgcatag caaggcaagg acaaggcaga
      481 agcggcggct atcgcagcct gatattgttc aaacaggcag atagggcatt tttcgtttac
      541 gcctttgcca agaacgacag ggaaaacatt tcggataaag aactggacgt ttaccgaaaa
      601 gccgccgcat attatctgaa atacacgcgg gcagagctgg cggctttgaa agaagacggc
      661 attatcacgg agatagaatc atgaaataca aaagcgaggc attagccgcc attcatgaaa
      721 tgatggaagg ggcttacaac atcggcgcaa tcgacaaaaa gactatgcgc ggctttgaca
      781 agtcctgcct gaccgaaatc aaaccgttga gcggcggaga catcaaggca atcagggaga
      841 aggaggcact atcgcaagcc gctttcgcca tctatctcaa cgtgggaaaa aatcacgttt
      901 cggcttggga gcggggcgtt aaaaagccga gcggcgcggc gttgaagctg ctgaccatcg
      961 tcaaaaacaa gggtatcgaa gccattgcgt agccgacttg gcaaacggca aaatcagcaa
     1021 gttcacaata gacacgctgc tgaatatgcc tgccaaaaca ggcaagaccg ccgaactgaa
     1081 tatcagggcg tagccgcata aatgcccgac cgcatcaaac caagccgaaa cggcgacggt
     1141 gcagacgaca tagcccgaca gcaaggcacg gcgcagacgg gcgcgaaacc cgaaacatcc
     1201 ccgaccgcga ggcacgggga ttttttgagc ccgttgcagg gggattggat ttaagcggcg
     1261 cgggcttgaa agcaaaacgg gcggggcgca gaactgttta aatgccgtct gaatctcaaa
     1321 cgatttcaga cggcattttg aaacaacggc tcaaattctc gatccccttc ccttaacgcc
     1381 gacgtttttt attaacgcgc cccttatttc tgacactttg ctcataaacc ggcataacgg
     1441 tcggcaacaa ccgttttaga ttttctatac gggcattgtt tacagcatca gcataagaca
     1501 ccgtactctg gaataccgcc taaaccctgc ggatagtttt ggatgtggta tcgacattgt
     1561 cggcagactt gtctaactcg accgttttca aataatcttt gacagatgct gcattcagtg
     1621 tcgcggaatc cgcgtatttt gaacaaaagg tcgggctact ttatcacaat agcagaaaga
     1681 tggaaaacgg cggggattgg tgaaaggtcg tctgaaatga tattcagacg accttgaacg
     1741 gctgtgtttt aaatatggta tttattcatt tgtttcacca tcaggcagtc caaaccacct
     1801 taagggaatc gtgttaaatt ggtaatggca gttaacactg ataatataat ctaaaacatc
     1861 tttatattcc ggctttgtaa accaatcatt caaaacatag acatattcaa cccgccaacc
     1921 taaagagtga accaattttg tatattgttt tctcttaaaa tcgcaagttt gtaatttctc
     1981 atctactgaa ccgggagttt gttggaattt gatctcaata ataaataagg tatcacggat
     2041 gatgataaat aagccattgt cgggtagtaa tcttttagac agatggtctt tccaattaat
     2101 attgtatccc ggtcttttca aaaatcggta aaactcatat tttttaaaac aataagcctt
     2161 caattctcca ttgaaccaaa cttcataacc cgcattatca tatgtttttc ttaagtcgta
     2221 cccgggaatt tcttcaaaca acgttcgtaa gtctgtacgt tcttcgaatc tgagtcctgt
     2281 ttgtgtcctt gcaccaccga ttccgccaat aatcattttt ctaacctttt ttttgctaat
     2341 tcaaaaaaat cttcttccag ttcgcaacca caaaatttcc gaccatgttt taaggcggca
     2401 acgcctgttg tgccgctgcc catgaaaggg tcaaaaatta aatctccgat gtttgaagct
     2461 gagagtatgc agcgttcaag caaggggagt ggtttttgtg tcggatgttt gccgaatgtt
     2521 ttttcggctt tgtttggagg aggaaatgtc caaacacatt tcatctgttt gccatcattt
     2581 tgtgctttca tcatttcata atgaaacgtg tgtttggctt ttttattttt ctttgcccat
     2641 aagattgttt ctgtcgaatg ggtaaaaaaa cggcaggaca aattaggggg aggattgggt
     2701 ttttcccaag taatattgtt caaaatatgg tatccgatag tttgcatcag gtagccgatt
     2761 aaataaatat tatggaatgt gccgcaaacc caaattgtgc cgtttggttt taataaggcg
     2821 taacacagtc ggagccattc ttcgtagaat tccaaatctg ccgccattcc tttggattta
     2881 tcccagttgc ccttattgac ggaaaccatt tgtccgtttt gacaactgaa gccgtcattg
     2941 gaaagaaagt aaggcgggtc tgagaaaatc atatcaaaac agccgtttgg atatttttcc
     3001 aatatcttcc gcatgacgtt aagggaattt tcgttgtaga ggacaaggtc gtctgaaacg
     3061 atttttttca aacgactttg ataaatggcg tcttcttcag ccggtttgtc aaaatcaatc
     3121 ataaattgcc aataattctc cgactttttt acggctgctg ccttttgcgg caatattgcg
     3181 ttgtacttca attgttttca gaatggcaaa agaataaata tcccttgtga attcagtatc
     3241 atgatttgaa atcaaaacgc cttgggaatc gggcgcaatt tgttgggctg actgggcaag
     3301 acggatttga ttgtctaaat tgaaactttc tttggcataa gtggtaaatg aagcggttgg
     3361 gcttaaaggc gcgtaagggg gatcgcaata aaccgtatcg gtattgtctg tctgagatag
     3421 aatcatttga aaatctccgc acattaattc aactctgtca gatttctgaa tgaaaccttc
     3481 catttcttgt tggggaaagt acggcgattt gtagcgtccg aacggcacat tgaatacccc
     3541 tttgctgttg taacggcata aaccgttaaa agcatgacgg ttcaaataaa taaatagtgc
     3601 tgagcgttcg tgcagatttt tgctgaagtt gaattgttcc cgcaattcat agaatcttga
     3661 atcgctattg ttttcggaaa taaagaaaga gcgggcgtag tcgatgaatc cggatttttc
     3721 ttcttttagg atacggaata agccgattaa gtcagcgtta atatcattga gcagataatg
     3781 ttcgaagtcc aatgcaagag acaaagcggc agaaccgcaa aagggttcaa tcaggcgttt
     3841 tcgtgtagga gtgggtagat tatgttcgat aaaggggaca agtttatgtt tgccgcctgc
     3901 ccattttagg aagggttttg aagccattag gatgcagagt ataagcgtgg ttgattggct
     3961 tggaattgtg ccaaaacatc gtgaggaata caacggattt atattttggg gacgtgtgta
     4021 gagtgagtct aaatccaata gaacctttcc attccaatat gttattggac ttatcaactc
     4081 catctgcctt aaaaaggccg tctgaaaccc tgtttcccag ttttcagacg gcctttatcc
     4141 gtatggctaa accttaagag cggtttagac gacgatattc accaagcgtc cgggaacgac
     4201 gatgattttc ttcgccggtt tgccttccat gaatttcacc gcgccttcgg tggcgagtgc
     4261 ggcggcttcg aggtcggctt tggatgcgtc ggcggcaaca gtgattttgc cgcgcagttt
     4321 gccgttgact tgaaccatca cttcgatttc ggatttgacc aaggcggctt cgtcgactgt
     4381 cggccagcct gcttcccaca gtttcgcgcc gttcaattcg ctccacaggg tttcgcagat
     4441 gtgcggcacg atgggccaca acaggcgtac ggcggtttcc aatacttctt gggcgacggc
     4501 gcgtccttgt tcgccgccgg tgtcggtttt gtcgtattgg ttgagcaatt ccatcacggc
     4561 ggcgatggcg gtgttgaact gctggcggcg gccgtagtcg tcgctgactt tggcagtggt
     4621 cgcgtgcagt ttgtggcgca ggtctttgag ttctttagac aaaccgtctt ggctgcctgc
     4681 gaacgctttg accgcttcgc cttgcttcaa gtattcgtaa acggtacgcc acaggcggcg
     4741 caggaagcgg tgtgcgcctt cgacgccgct gtcgctccat tcgagggact gttcgggcgg
     4801 tgcggcgaac atcataaaca ggcgggcggt gtccgcgccg taggcgttaa tcagttcttg
     4861 cggatcgacg ccgttgtttt tggacttgga cattttttcc gtgccgctga tgacgacggg
     4921 cagcccgtcg gctttgagga cggcggaaat ggggcggcct ttgtcgtcga acgtcagctc
     4981 gacatcggcg gggttgatcc aatctttgcc gcctttgtcg ttttcgcggt agtaggtttc
     5041 gcaaacgacc atgccttgcg tcagcaggcg ttcaaacggt tcgtcaacat tgactagacc
     5101 ttcgtcgcgc atcagtttgg tgaagaaacg cgcgtacaag aggtgcaaaa tcgcgtgttc
     5161 gatgccgccg atgtattggt cgaccgcgcc ccagtatttc gcggcggcag gatcgaccat
     5221 gccgtctgaa aattttggcg acatatagcg gaagaaatac cagctcgatt ccatgaaggt
     5281 gtccatggtg tcggtttcgc gttttgccgc gccgccgcag catgggcagg cagtttcgta
     5341 aaactcgggc atttttgcca gcggcgaacc catgccgtcg ggtacgacgt tttcaggcaa
     5401 aacgaccggc aattggtcgg cagggacggg tacgtcgccg cattgttcgc aatggacgat
     5461 gggaatcggg cagccccagt agcgttggcg cgaaatgccc cagtcgcgca ggcggtattg
     5521 ggttttcggt tcgcccgcgc cttggctttg cagcttggcg gcaacggcat cgaatgccgt
     5581 ctgaaaatcc aagccgtcca agtcgccgct gttgaccaat acgccgtttt ctttgtcggc
     5641 ataccattct tgccatcggt ttgcgtcgaa tgcgttgtcg ccgacggcaa tgacttgttt
     5701 tttaggcaga ttgtatttgg cggcgaactc aaaatcgcgt tcgtcgtgcg ccggaaccgc
     5761 catcactgcg ccgtcgccgt agccccacaa tacatagttg gcaatccaca cttccagctt
     5821 gtcgccgttg agcgggttga cgacgtagcg accggtcggc acgccttttt tctccatcgt
     5881 cgccatatcg gcttcggcaa ccgaaccggc tttgcattcg gcaataaatg cctgcaattc
     5941 gggtttgtcg gcggctgcgg cggctgccag cggatgctcg gcggcaacgg caacataagt
     6001 cgcacccatc agcgtgtcgg ggcgggtggt ataaacttgc agcaatttcg cgtaatcgcc
     6061 ttccaagcct tgtttgctgt cgtctgaaac ggcgaagcgc acggtcatac cgcgcgattt
     6121 gccgatccag ttgcgctgca tggttttgac ttgttccggc cagtgttcca gcttgtccaa
     6181 gtcgttgagc agctcttcgg cgtaatccgt gattttgaag taatacatcg ggatttcgcg
     6241 tttttcgatc aacgcgcccg aacgccagcc gcgtccgtcg atgacttgct cgttggcaag
     6301 gacggtttgg tcgaccgggt cccagttcac cgtgccgttt ttgcgataga cgatgccttt
     6361 ttcaaacagc ttggtaaaca gccattgttc ccagcggtag tattcgggtt tgcaggttgc
     6421 ggtttcgcgc gcccagtcaa tcgcaaaacc caggcttttg agctgggttt tcatgtattc
     6481 gatgttatcg tacgtccaag cggcaggggc gacgttgttt ttcatcgccg cgttttccgc
     6541 cggcatgccg aacgcgtccc aacccatagg ctgcatgacg ttgaagccgt ttaaaagttt
     6601 gaagcggctc aatacatcgc cgatggtgta gttgcgcaca tgccccatgt gcagcttgcc
     6661 gctgggatag gggaacatgg agaggcaata atatttgggt ttggaagcgt cttcggagac
     6721 gttgaaaata cgggcgtcgt cccatttttt ctgcgccgca ggctcgatgg cggcgggttg
     6781 gtaatgttct tgcatggtca ttctgttttt cgcttgaaaa cgttaggaat ttaaaggagg
     6841 aattataaca ggttgccgat gtcggcgaat cggcaaattg ccggcaggat gcgtaaattc
     6901 gcacgcgcat cattccgtat gccgtacaaa tacaccgcgt ttactgatac gcacgttttt
     6961 tatgctaata ttacaaacca aaatcaaatg tttaaaactc tcctgatgcg gctcttccga
     7021 acaaaaggca gacgggcatc gggtaaaaga ggattctgca tatgaaaatc aaacaaatcg
     7081 tcaaaccggg cttggcagta ttggcggcgg gcgttctgtc tgcctgcgca accaaaagca
     7141 acgtcaaagc cgacggaacg accgacaatc cggttttccc gaaaccctat tccgtaacgc
     7201 tcgacaacaa tcgcggtaca ttcccgacct atgacgaatt ggacttgatg cgtcccggtc
     7261 tgaccaaaga cgacatctac aaaatcctgg gtcgtccgca ttacgacgaa ggtatgtacg
     7321 gcgtgcgcga atgggattat ctgttccact tccacacccc gggcgtaggc atcgaccctg
     7381 aaaacacttc cggcgtagaa ggcattacca cctgtcaata caaaattatt ttcgataaag
     7441 acaaatttgc ccgcagcttc tactggaacc ccgtcttccc gaaagatgcc gcctgtccgc
     7501 cgcccgcacc caaagccgag ccgcaagtca tcatccgcga aatcgtgccg gcaaaaccga
     7561 aacgtatccg ccaataatcc gacatgccgt tccgcctgtt tttagggata ttatgcggcc
     7621 tgtcaatggt tgcccccgta tatgcacagg ggcaaccgga tgcggtcaac gcttatattc
     7681 aaaagaaaaa agtcatcgta aacacatcca aagcggaact ctgttttgcc gatgacaggc
     7741 agtgccaccc cgtcctcatc ggtgttgcca cgcccaaggg gacgttcggg ctgacgctga
     7801 acagtaccga caagcctgga tacggcggcg aagtcatcgg tttcaagcag gagggtgatt
     7861 ttcttttcgc cctgcaccgc gtttggaatc agataccgtc ggaaaggcgg aacgaacgca
     7921 tcgcctcccc gtccgtgtcc gacaggatta tgaccaacgg ctgcatcaac gtcagcgatg
     7981 cggtgtacga aaaactgcgt cattattttg tgttggaagt gatttgaaac agacggatac
     8041 cgcacgcgcc ggtatctgtt ttcacattgc cccgatgcct gaaacagact gtccgccacg
     8101 tcatgccgtc tgaaaccggc gcagatgccg ccaagccttc agacggcatt gcctgcccgc
     8161 tccgaccgaa caacaaccat ctttgggaga accttatgcc cgaacaaaac cgcatcctct
     8221 gccgcgaact aagcctgctg gcattcaacc gccgcgtgtt ggcacaggcg gaagacaaaa
     8281 acgtccccct tttggaacgc ctgcgcttcc tgtgcatcgt gtcgtccaat cttgacgagt
     8341 ttttcgaagt ccgcatggcg tggctcaagc gtgaaaacaa gctgcacccc cggcgcaggc
     8401 tggacaacgg caaaatgccg tctgaaacca tcgccgacgt taccgaagcg gcgcgctccc
     8461 tgatacggca tcagtacgac ctgttcaaca acgtccttca gcccgagttg gcgcgggaaa
     8521 gcatccattt ttaccgccgc cgcaactgga cgggcacgca gaaaaaatgg atcgaagact
     8581 atttcgaccg cgaactgctg ccgatcctga cccccatcgg actcgacccg tcccacccct
     8641 tcccgcgacc gctgaacaaa tcgctcaact tcgccgtcga actcgacggc acggacgcat
     8701 tcggcaggcc ttcggggatg gcgattgtgc aggcaccgcg catcctgccg cgcgtcgttc
     8761 ccctgccgtc cgaactgtgt ggcggcggac acggcttcgt cttcctgtcg tccatcctcc
     8821 acgcccacgt cggcaaactc ttcccgggca tgaacgtcaa aggctgccac cagttccgcc
     8881 tgacgcgcga cagcgacttg accgttgacg aagaagacct gcaaaacctc cgcgccgcca
     8941 tccaaaacga actgcacgac cgcgaatacg gcgacggcgt gcggctcgaa gtcgccgaca
     9001 cctgtcccgc ctacatccgc gactttctgc tcgcgcaatt caaactgacc gccgccgaac
     9061 tctatcaggt caaaggcccg gtcaacctcg tgcgcctcaa cgccgtcccc gacctagtca
     9121 accgccccga tttgaaattt cccacacaca cgccgggcag actgaaagcc ttgggcaaaa
     9181 ccgcgtccat attcgatttg gtgcgccaat cgcccatcct gctgcaccac ccctaccaat
     9241 cgttcgaccc cgttgtcgaa atgatgcgcg aagctgccgc cgaccccgac gtgcttgccg
     9301 tcaaaatgac gatttaccgc accggcacgc gttccgaact cgtccgcgcc ctgatgaagg
     9361 cggcactcgc cggcaaacaa gtaaccgtcg tcgtcgaact gatggcgcgt tttgacgaag
     9421 ccaacaacgt caactgggcg aagcagctcg aagaggcggg cgcgcacgtc gtgtacggcg
     9481 tgttcggcta caaagtccac gccaagatgg cactggtcat ccgccgcgaa gacggcgtac
     9541 tcaagcgtta cgcccacctc ggcacgggta actaccacca aggcacatcg cgcatctaca
     9601 ccgacttcgg catcattacc gccgacgaac aaatcaccgc cgatgtgaac acattgttta
     9661 tggaaatcac aggcttgggc aaacccgggc ggctgaacaa actctaccaa agcccgttta
     9721 ccctgcacaa aatggttatc gaccgcatcg cacgcgaaac cgaacacgca aaagccggca
     9781 aaccggcgcg gattaccgcc aagatgaatt cgctcatcga accgaccgtc atcgaagccc
     9841 tgtatcgggc aagcgcggca ggcgtacaaa tcgatttgat tgtgcgcggt atgtgcacct
     9901 tgcgcccggg tgtaaaaggc ttgtccgaaa acatccgcgt ccgctccatc atcggcaggc
     9961 agctcgaaca cgcgcgcgtg tattgcttcc acaacaacgg cgcggacgat acctttatct
    10021 ccagcgcgga ttggatgggg cgcaacttct tccgccgcat cgaaaccgcc gcgccgattg
    10081 ccgcgcccga actcaaaaaa cgcgtcatcc gcgaaggttt ggaaatggca ctggcagaca
    10141 atacgcacgc gtggctgatg cagcccgacg gcggctatat ccgcgccgcg cctgccgagg
    10201 gcgaaagcga agccgacctg caaaacgatt tgtggacact gctcggaggc tgacccgcac
    10261 cgccccaatc aaaaaccatg ccgtctgaaa cctttccgtt tcagacggca tggttttaca
    10321 gcaatctaaa cagggcggac tggaatcaaa aacacacctt cgccattccc gcacaagcac
    10381 ttcccctata cgctcccaac cccaatccgc cgcattccag acggcattgc ctttccgaca
    10441 gccgaacaaa accccgaatc cgtctgcacg gttcggggca tatctccaat acgggcatcg
    10501 tgctccggaa aaccgtcaaa tccgcatcgg catcacaata tatttgaaat tcggattgtt
    10561 cggcacggta aacagcgtcg agcggttggc atcgccgaag gcaagctgca tatcgtcgga
    10621 atggatgttg cgcaacacgt ccatcagata gccgatattg aaaccgactt cgagttcgcc
    10681 gccctgatag gcaatctcga tttcttcgcg cgcttcttcc tgctcgttgt tgctgcacac
    10741 gacgctcaac aggccggatt gcaggaacag gcgcgcgcca cggaattttt cgttggcaag
    10801 aatggacaca cgttccagcg cgcccaaaag ttcggcacgg gacaaaacga aaatcttgtc
    10861 gttgtccaaa gggatgacgc ggttgaaatc ggggaatttg ccgtcgataa ccttgctgac
    10921 gatggtcgtg ccgttgcatt ggaaacgcac ctgcttgtcc agcagctcga tttgaatcgg
    10981 atcgtcgggg ttgttcaaca gtttgaacag ttccagcacc gttttgcgcg gcaaaatcac
    11041 ttcggcgcgc ggcaaatccg catcaatcgc gcaggctgca taggcaaggc ggtgtccgtc
    11101 ggtcgccaca aggcgcaact ggctgccctc aacctgcatc agcagaccgt tgagataata
    11161 gcggatgtcc tgcaccgcca tgctgtactg cacttgcgac agcatggttt tgaaacgctc
    11221 ctgctccagc gagaaagtcg cgctgatgtc ctcgccgaca ttcatcatcg gaaaatcggc
    11281 ggcaggcagg gtctgcaggg caaaacgcga tttgcccgcc ttcagcgtca gacggctgtc
    11341 gtcccaatcc agcgacacca gcgcaccggc aggcagcgcg cgcaaaatgt cctgaaattt
    11401 cttggcattg gtggtgatgc ggaagtcgtc cgcgccgccc tcgggacccg cagtgtcgat
    11461 ttggatttcc aaatcggttg ccaagagttt ggtctgaccg ccttttccct caatcaggac
    11521 gttggacagg atgggcaggg tgtggcggcg ttcgacgatg ccggtaacgg cttgcagcgg
    11581 cttgagcagg ctgtcgcgtt cggcttgtaa aatcaacatg ttcgctcctt taaatcggtt
    11641 ggatttttta cccttcggac ggcatgggca atatcatgcc gtctgaaaac gttttccatc
    11701 agttttgaat cagaatcagc agcttttcat aatcctgagc caattccgga tcttcttcgc
    11761 gcagtttcgc cactgccctg atgccgtgca taacggtcgt atggtcgcgc ccaccgaacg
    11821 aatcgccgat agacggcagg ctcaaagtgg tcagttcttt ggtcaggctc atcgccacct
    11881 ggcgcggacg ggcaatgttg cgcgtgcgtt ttttgccgag tacgtcgctg attttgatgc
    11941 ggtaatattt ggcaacggca tcaataatga tatcggcggt aatgacctta tgcttctcgg
    12001 caataatgtc ctgcaaagcg gtacgcgcca aatcgatgtc gatgacggga cggttcataa
    12061 agcggctgct cgctccgaca cggttaaacg cgccttcaag ctcgcgcacg ttggaacgga
    12121 tcagattggc aatgaacagc gcggcttcgt cttcaatact gatgcccgcc gcttccgcct
    12181 ttttctgcaa aatggcgatg cgcatttcca attcgggcgg ctcgagttcc aaagtcagtc
    12241 cccatgaaaa acgggatttg aggcggtcgt ccatgccttc gattttggcg ggtaaaacat
    12301 cgcaagtgag gatcagctgt tttttctcgt tgtggaaatg gttgtacaga tagaaaaact
    12361 cttccatcgt acggtctttt cctttaataa actgaatatc gtcgataatc agcaggtcgt
    12421 attgcttgta ttgctgcttg aatacgtcat aggtattgtt gcgaaccgcc ttcataaagc
    12481 tgcggatata gtcgtccgaa tgcatatagc gcactttggc atcgggacgg tttttcaaaa
    12541 gctcgttgcc gaccgcctgt accaggtggg ttttgcccaa acccgtgctg ccgtacagga
    12601 aaaacgggtt gtagctctgc cccgggcttt ccgcaatcgc ctgcgccgca gccgccgcaa
    12661 ggcggttgcc cttgccttcg accaatgtgt cgaacgtata gtccggcgac agattggtct
    12721 gctcgtaacg tgcctcttcc gcatcgcgct gcgcatccgt ccgcgctttc gcaagcacct
    12781 ccgattccgg acgggaagca ggttcggcag tatggcgcgg ctcatgcggg aggtttttca
    12841 tacgttccgc cagaatatcc gccgccgttt tcgacgcagc gggtttgaca ggctcttcag
    12901 acggcagctc gtccaacaga acctcctgca caggcatctc ctccgacccc gcgtgcaagg
    12961 acggctcggc aggttcgaca gcaccttcaa ccgccgccat ctcataacgc acgccttctc
    13021 ctggtttgaa tacgaaggcg gaacggccag cagccaactc ttccctcacc gcttctattt
    13081 tcccggcaaa ctggctctta agcatattgc aggcaaactg gttcttgccg tacaccaccc
    13141 atacgccacc ctcctcaccg acggtaaggg gcgcaatcca ttgcgcaaac tgcccttgag
    13201 gcaacatatc gtgaagacgg cggaggcaca gcggccaaaa ctctgctaat gtcatggata
    13261 agctcgaatc ggtaaaaatg aaatcgaaaa caaagaaaat ataatatttt caaaaagaaa
    13321 acaaatctgt tgaacacaca tcggttcaaa atgcagcgaa ccgaattata ccgactcgcc
    13381 gatattttat ccacaacccg tgcaaaattt atccacagaa aggcggcaga aatccgcagg
    13441 caatcgggca atcctcctgc aaagtttcta tattgattga caaaagcggc aaattggagt
    13501 gtaattcacg gtttaattat ctacccattc tatttttagg aaacatcatg aaacgcactt
    13561 atcaaccttc cgttaccaaa cgcaaacgca cccacggctt cctggtgcgc tccaaaacac
    13621 gcggcggccg cgcagtattg gctgcacgcc gcgccaaagg ccgcaaacgc ctggcggtat
    13681 aattttggac taccgcttcg gaaggcagta ccgcttgttg aaaacggatg atttttcatc
    13741 cgtttttgca ttcagaaacc gccgcagccg cgacctgctg caagtttcgc gttcaaacgg
    13801 caacgggctg gaccatcccc gcatcggtct ggtggtcggc aaaaaaaccg ccaaacgcgc
    13861 caacgaacga aattatatga agcgcgtcat ccgcgactgg ttcagattga acaaaaaccg
    13921 gctgccgccg caggatttcg tcgtgcgcgt ccaccgtaaa ttcgacaggt ctaccgcaaa
    13981 acaggcaagg gcggaactgg cacaactcat gttcggcaac cccgcaaccg gatgcaggaa
    14041 acaggcatga tcagaacggt actctgcagg caaggttcag acagcaacgg gtttcccata
    14101 caaggaacat cccgatgaac ttcctattgt ccaaactcct gctgggactg atacggttct
    14161 accaatattg catcagcccg ctgattccgc cgcgctgccg ctatacgccg acctgttcgc
    14221 aatacgccgt cgaagcagtc aaaaaatacg gcgcattcaa aggcggccgg ctcgccatca
    14281 agcgcattgc acgctgccac cccctcggcg gacacggaca cgaccccgtt ccctgacccg
    14341 acgcaatatt caaattgcac gctttccttt tatttcccat cggtttctat ataatgccgt
    14401 ctgaagcttc gggcaggcgg cacgaccgtc gggtatgaaa cccgccctta ttccccgtct
    14461 atcggaacac gcaacctgcg gcatttccga ccattcagga aactcttatg gattttaaaa
    14521 gactcacggc gtttttcgcc atcgcgctgg tgattatgat cggctgggaa aagatgttcc
    14581 ccactccgaa gcccgtcccc gcgccccaac aggcagcaca acaacaggcc gtaaccgctt
    14641 ccgccgaagc cgcgctcgcg cccgcaacgc cgattaccgt aacgaccgac acggttcaag
    14701 ccgtcattga tgaaaaaagc ggcgacctgc gccggctgac cctgctcaaa tacaaagcaa
    14761 ccggcgacga aaataaaccg ttcatcctgt ttggcgacgg caaagaatac acctacgtcg
    14821 cccaatccga acttttggac gcgcagggca acaacattct aaaaggcatc ggctttagcg
    14881 caccgaaaaa acagtacagc ttggaaggcg acaaagttga agtccgcctg agcgcgcctg
    14941 aaacacgcgg tctgaaaatc gacaaagttt atactttcac caaaggcagc tatctggtca
    15001 acgtccgctt cgacatcgcc aacggcagcg gtcaaaccgc caacctgagc gcggactacc
    15061 gcatcgtccg cgaccacagc gaacccgagg gtcaaggtta ctttacccac tcttacgtcg
    15121 gccctgttgt ttatacccct gaaggcaact tccaaaaagt cagcttttcc gacttggacg
    15181 acgatgccaa atccggcaaa tccgaggccg aatacatccg caaaaccccg accggctggc
    15241 tcggcatgat tgaacaccac ttcatgtcca cctggattct ccaacctaaa ggcagacaaa
    15301 gcgtttgcgc cgcaggcgag tgcaacatcg acatcaaacg ccgcaacgac aagctgtaca
    15361 gcaccagcgt cagcgtgcct ttagccgcca tccaaaacgg cgcgaaagcc gaagcctcca
    15421 tcaacctcta cgccggcccg cagaccacat ccgtcatcgc aaacatcgcc gacaacctgc
    15481 aactggccaa agactacggc aaagtacact ggttcgcctc cccgctcttc tggctcctga
    15541 accaactgca caacatcatc ggcaactggg gctgggcgat tatcgtttta accatcatcg
    15601 tcaaagccgt actgtatcca ttgaccaacg cctcttaccg ctctatggcg aaaatgcgtg
    15661 ccgccgcacc caaactgcaa gccatcaaag agaaatacgg cgacgaccgt atggcgcaac
    15721 aacaggcgat gatgcagctt tacacagacg agaaaatcaa cccgctgggc ggctgcctgc
    15781 ctatgctgtt gcaaatcccc gtcttcatcg gattgtattg ggcattgttc gcctccgtag
    15841 aattgcgcca ggcaccttgg ctgggttgga ttaccgacct cagccgcgcc gacccctact
    15901 acatcctgcc catcattatg gcggcaacga tgttcgccca aacttatctg aacccgccgc
    15961 cgaccgaccc gatgcaggcg aaaatgatga aaatcatgcc gttggttttc tccgtcatgt
    16021 tcttcttctt ccctgccggt ctggtattgt actgggtagt caacaacctc ctgaccatcg
    16081 cccagcaatg gcacatcaac cgcagcatcg aaaaacaacg cgcccaaggc gaagtcgttt
    16141 cctaaatgcc gcagcatgaa aaatgccgtc tgaaacctgt tcagacggca tttttattgc
    16201 ccacccccta tcggggcgga aatcttcaac ccgcatacat cacaaaaatc gtcgggcgtt
    16261 ttttcagatt gggcatttct tttctttttc gccactgcac gattgtttga ctgatgattt
    16321 cctgtgtcgg caaggtcaaa tccgtagccg tgcataaacg cgtttcagga tgcaggtttt
    16381 ccaccgcatc ggcaagcagc gcatcattgc ggtaaggcgt ttcaataaaa atctgcgtct
    16441 cgccgcactg gcgcgaacgc tgttccaaag cccgaaaagc ctgaatccgc tcgttttttt
    16501 cagacggcag atagccttta aacgcaaaac tctgcccgtt cgcacccgaa gccatcaaag
    16561 ccagcagcag gctggaaggc ccgaccagcg gacgcacttc aaaaccgtgt ttatgcgcca
    16621 atgccaccaa attcgcaccc ggatcggcca cagccgggca acccgcctca ctgacaatgc
    16681 ccatactgcg cccttcttgc aaaggtttca gcaattccgg caaagtcttc aaatccgtat
    16741 gttcattcaa cgtttgcaga ttcagctcgc ggataggcgt agtcacgccc aaatgtttca
    16801 aatgcgcacg cgccgttttt tccgcctcca cgacaaaatc cgtcagcccg acaatcgcct
    16861 gttgttcatg cggcaacagg cacggcgtgt caggcgtacc caaaggcgta ggaatcaaat
    16921 acaaaacagg agacatcatt ccctcactca tcggttaaaa atgccgtctg agcctttcag
    16981 acggcataaa cgggcagtta cagaacctcc acgccctcat ttttcaagaa atcgaccaga
    17041 cggaaaaccg gcaaaccgat taaagcattc ggatcggtac tctcaatcct ttcaatcagc
    17101 aatgcaccca aatcctcact cttcagcgca cacgaacaat aaaccgcatc aggctcgcgc
    17161 tccaaatagc ggaggatatg caactcgtcc aactgcctca tcacgaccac cgtcttatcg
    17221 atatgccgcc gcatcctgcc cgtaaccgta ttcaacagca cgatcgcgct gtaaaactca
    17281 atctccctgc cgctcaagtg catcagcatc ttttgcgcat tggcaaggtt catcggcttg
    17341 ccccactgcc tgccgtcgca ccacgccacc tggtccgcac cgacaatcaa cgcctctggg
    17401 aaacgcccgg tcaacgaccg cgccttaccc tcggcaaggc gcaatgccgt ctgaggggcg
    17461 gattccccca acatcggcgt ttcgtcaaaa tcgggggacg ccgcctgaaa ggcaatgccg
    17521 agcctttcca tctgttcgcg gcggaaaacc gaactcgtac ccaaaatcaa aggcagttcc
    17581 aaacccatcc catcctcctt accgttgaaa acacgcccga aggggcagta aaatccagcc
    17641 atgcgccgaa acacggatac ccgccttcgg cgtaccgcaa catttttctt aaaaatattg
    17701 acgttagaac atctaaatta tatcatatcc cgtttatgtc agaccctaat ttgattgact
    17761 tggaaatttt tgccgccgaa gggcagaacc tgcaaggcag ttttctgctg gaagaattgg
    17821 atgaacgcgt cagttcgcac gattatcccg ccgacaggca gaccaaaata tcgtttacac
    17881 tgaccggcgg tcgcgaccgg ctgcaacgcc tgttcctcga cctgaacgtc aaagccgata
    17941 tgcccctgat ttgccagaga tgtatcaaac ccatgccgtt catgcttgat gaaagcagcc
    18001 gtatcgtcct gttttccaac gaagagtcct tggacgaatc catgcttgcc gacgaagaac
    18061 tcgaaggcat actgattgaa aaagaactcg acgtgcgcac attggtagaa gaccaaatcc
    18121 tgatgtccct gcccttttcg ccgcgacacg aagactgcgg cgacaatggg acactggaag
    18181 aagtcaatcg ggacaaaccc aacccctttg ctgttttggc aggtttgaaa agcaattgat
    18241 taggacacag tttatttatc taggagcttg aaatggccgt tcaacaaaac aaaaaatccc
    18301 cttccaaacg cggtatgcac cgttcgcacg acgcgctgac cgcgcctgca ctgtctgtcg
    18361 acagcacaac cggcgaagta caccgcccgc accacatctc ccccaacggt atgtaccgcg
    18421 gccgcaaagt ggtcaaagcc aaaggcgaat aatccctatt cgactgactg aaaaagccag
    18481 aacattgcca tgcaattact ggcttttttt gcattggacg caccatccgt ccaaactttc
    18541 gccatacgtc aacacacagg ggcaaagcgt tccgtataat accccgtgaa aatattccaa
    18601 aagccccaac caccaaggaa attccgatga aacagaaaat ctggtacacc tacgatgaca
    18661 tccaccgcgt catcaaagca ttggcagaaa aaatccggaa cgccgacatc aaatacgatg
    18721 ccatgattgc catcggcggc ggcggcttta ttccggcacg tatgctgcgc tgttttctgg
    18781 aaattccgat ttatgccgta accaccgcct attacgacag cgacaacgaa ggacaggtta
    18841 ccgaagaagt caaaaaagtc caatggctag accccgtccc cgaagcctta cggggtaaaa
    18901 acgtccttgt tgtcgacgaa gtggacgaca gccgcgtaac catggaattt tgcctgacag
    18961 agctgctcaa agaagacttc ggcaccatcg gcgtcgccgt actgcacgaa aaaatcaaag
    19021 ccaaagcagg taaaatcccc gaaggcattc cctatttcag cggcatcacc gtagaagact
    19081 ggtggatcaa ctatccgtgg gacgcactcg acatcgacga acacaaccgc cttgccgagg
    19141 ccggccgagg ctgacccttt cagacggcat attttccgaa ccgatgccgt ctgaagcccg
    19201 cacgacccct gccgcagacc gaaaacctac cggagaaccc tatgattaca cttgccgtag
    19261 atgccatggg cggcgaccaa ggacttgccg ttaccgtacc cggcgcaacc gcattcctcc
    19321 aagcacaccc cgatgtccgc ctgattatga ccggcgacga aacgcaactg cgccaagccc
    19381 tgaccgcggc aggcgcaccg atggaacgca tcgacatctg ccataccacc caagttgtcg
    19441 gcatggatga atcccctcag tccgccctaa agaacaaaaa agactcctcc atgcgcgttg
    19501 ccatcaacca agttaaagaa ggcaaagccc aagccgccgt atccgcaggc aacacgggcg
    19561 cactcatggc aaccgcacgt ttcgtcctca agaccatacc cggtatcgaa cgccccgcca
    19621 tcgccaaatt cctcccgtcc gacaccgacc atgttaccct cgccctcgac cttggcgcga
    19681 acgtcgactg cacgcccgaa cagctcgccc aatttgccgt tatcggcagc gaactcgtcc
    19741 acgcactcca tcctcaaaaa ggacagccgc gcgtcgggct ggtcaacgtc ggcacggaag
    19801 acatcaaagg tacggacacc gtcaaacaaa cctacaaact gctgcaaaac agcaaactca
    19861 actttatcgg caacatcgaa agcaacggca tcctgtacgg cgaagcagat gtcgtcgtcg
    19921 ccgacggctt tgtcggcaac gtcatgctca aaaccatcga aggcgcggtc aaattcatga
    19981 gcggagccat ccgccgcgaa ttccaaagca acctgttcaa caaacttgcc gccgttgccg
    20041 ccctacccgc cctcaaaggg ctgaaaaaca aactcgatcc gcgcaaattc aacggggcca
    20101 tcctgctcgg gctgcgcggc atcgtcatca aaagccacgg cggcacagac gaaaccggtt
    20161 tccgctacgc actcgaagaa gcctaccacg aagccaagtc cgccggcctt tccaaaatcg
    20221 aacaaggcgt tgccgaacaa ctcgccgcac tcgaaactgc caaagccgtc caaaacgaaa
    20281 atgccgacgg tctgtaacac acacgatgcc gtctgaacgc ccccgcccct ttcagacggc
    20341 atccgcccgc accaaacctg cgggcgcgga cggcgatgcg cctgtccggc acttcccaaa
    20401 tacttccctg taaaataagg agtatttgaa aaatgaagac attagaaaaa cggatgaaag
    20461 ctctagacaa acagatgatg aagttcggaa aatcccttga aggcaggctt gatgcccgtc
    20521 tgattgaatc cgcattggat tatattcatt attcggaacg ttttttggct tttgaaatcc
    20581 tgtgtactta tatcgaagat ttcgatgtcc ggctgacgga acaagaatcc cgggaaattt
    20641 cttttatcaa caaggaattt gagatagaaa gcacgtccga ttaaccaata aagccaatgg
    20701 gttgataaac atgaaaacat cgacggtcgt ttttggcgga ttttttatgg cagacaacgg
    20761 agagcgaatc caaatccccg ttttggaaaa tcctgacatt agggaaatca atcacttttt
    20821 ttccgtatca aattttgaga aaaaaaccgg cgtccttgtt ttcagaatca tccccgagcc
    20881 ggaatttggc aataccgaat taactgtcta ttttgaaaaa ggatattatt tgccaatgat
    20941 tcaaacaatt ttagaaggcg gggatattga agtcaaaaac cttaaaacgg aaaattatag
    21001 tggaaataca atggaaattt ggggagattc ctaccctatt gagcatatct ctaaaaatat
    21061 ttctacaatt caaaatataa tttctgaatt tatgatacaa aaacaaacac cggcaccaat
    21121 aatttgatgg aaaaccaaca atcaaaatgc cgtctgaagc atgtttggtt ttcagacggc
    21181 atttccttcg cttaaaacag cgtatcggca accccgccct gcctgtccac ggcaatctgc
    21241 atctgaaaac catctgtatc ccaaaccaca cccccatccc tgtttccgtc atttgcaccc
    21301 tgcccgtatt gggcaatcat cggtttttcg cttacaatag ccgaatctga accaactatc
    21361 caaaaaggcc gttcccatgc agtatgccaa aatttccggc acgggcagct atcttcccgc
    21421 caaccgcgtc agcaatgacg accttgccca aaaagtggat acctcggacg agtggattac
    21481 cgcgcgtacg ggcatcaagt tccgccatat tgcagccgaa aatgagaaaa ccagcgatct
    21541 tgccgccgaa gcagcccgcc gcgcactgga tgcagccgga ttagacagcg gcgaaatcga
    21601 tttgattatc gtggcgacgg caacgccgga tatgcagttt ccttctaccg ccaccatcgt
    21661 gcagcaaaaa ttgggcatca ccaacggctg tcccgcgttt gacgtacagg cagtgtgcgc
    21721 aggctttatg tacgcgctga ccactgcaaa cgcctacatc aaaagcggca tggcaaaaaa
    21781 cgcgctggtc atcggcgcgg aaaccttcag tcgcattgta gactggaacg accgcacaac
    21841 ctgcgtattg ttcggcgacg gcgcgggcgc ggtggttttg agcgcggcgg acaaaccggg
    21901 catcatccac agcaaactca aagccgacgg caattatctg aaactcttaa acgtccccgg
    21961 gcaaatcgcc tgcggcaaag tttccggttc gccgtacatt tcgatggacg gtcccggcgt
    22021 gttcaagttt gccgtcaaaa tgctgtccaa aatcgccgat gacgttatcg aagaagccgg
    22081 ttataccgcc gctcaaatcg actggatcgt gccgcatcag gcaaaccgcc gcattatcga
    22141 atcgaccgcg aaacatttag gtttgagtat ggacaaagtc gtcctgaccg tccaagacca
    22201 cggcaacaca tccgccgcat cgattccgct ggctttggat acgggcatcc gcagcggaca
    22261 aatcaaacgc ggtcaaaacc tgctgctcga aggcatcggc ggcggtttcg cgtggggcgc
    22321 ggtattgctg caatattgaa taccatgccg tctgaagcag gttttcagac ggtatttccc
    22381 atatcatgaa gcggcaggct ttcttcaaac caattgcgtg tgcggcattt ctgtctgcca
    22441 tttcgctgcg cctccccgta ttgggcgcgt gttacgcaat attgtccctc tatgcgtttg
    22501 cactttacgg catcgacaaa cggcgtgccg tgcggggaaa acgccgcatt cccgaacacc
    22561 gcctgctgct gcctgccttg ttcggcggtt gggcgggcgc atacttgggc agcaggatat
    22621 tcaggcataa aacggcgaaa aagcgttttg ttgtgctgtt ccgtctgact gtttcaggta
    22681 atgtcctggc gaccctcatc ctgattgatt atttcgttcc gcccgaactt tttgtcaaac
    22741 tcgggcaaca tctctgacaa tccaaccaaa caaaggaata ccatgtcttt tgcattcttc
    22801 tttcccggac aaggttctca aagcctcggc atgatgaacg gctttacagg gcaggccgtc
    22861 gtcaaaaaca catttgacga agcatccgcc atattgggtc aagacttgtg ggcgatgatt
    22921 aacggtagcg atgccgaaat catcggtcaa accgtcaata cccaacccat catgctcgcc
    22981 gccggcgttg ccgtttaccg cgcctatttg gaagcgggcg gcaaaacgcc tgccgccgtt
    23041 gccggacaca gcctcggcga atataccgca ctcgttgccg ccggcgcatt ggattttgcc
    23101 gacgcggtca aactcgtgcg cctgcgcgcc gaactgatgc agtctgccgt accgcaaggc
    23161 gtgggcgcaa tggcggcgat tctcggcttg gaagatgagc aggtaaaaca aatttgcgcc
    23221 gaagccgccc aaggcgaagt ggtcgaagcc gtcaacttca actcacccgg acaaatcgtg
    23281 attgcaggca atgccgccgc cgtcggacgc gccatggctg ccgccaaaga agccggtgcc
    23341 aaacgcgccc tgccgctgcc cgtgtccgta ccttcccatt gcagcctgat gaaacccgcc
    23401 gccgacaaac tcgccgaagc cctcaaaacc gtcgaaatca agcagccgca aatccgcgtc
    23461 atccacaacg ccgacgttgc cgcctacgat gatgccgaca aaatcaaaga cgcgctcgtc
    23521 cgccagcttt acagccccgt acgctggaca gaaaccgtca acgcccttgt ttcagacggc
    23581 attgccgaat ccgccgaatg cggcccgggc aaagtgttgg cgggcttggc aaaacgcatc
    23641 aacaaggccg ccgcgtgcag cgcactgacc gatgccggac aggttgccgc ctttatcgaa
    23701 gcgcactgac ttcgttccgc aaaaagcagc ctgccctctt caggctgctt ttcacgtccg
    23761 aacggcaaac agccgcatat ttgcgctata attgatgacg accaaaccac cgacagcggc
    23821 tgccgttgca gttcccgccc taccgatatg atagaaaaac tgactttcgg actgtttaaa
    23881 aaagaagacg cgcgcagctt tatgcgcctg atggcgtacg tccgccccta caaaatccgc
    23941 atcgttgccg ccctgattgc cattttcggc gttgccgcca ccgaaagcta ccttgccgcc
    24001 ttcatcgccc ccctgattaa ccacggcttt tccgcacctg ccgcgccgcc cgagctgtct
    24061 gccgccgccg gcatcatttc caccctgcaa aactggcgcg aacagtttac ctatatggtt
    24121 tgggggacgg aaaacaaaat ctggaccgtc cccctcttcc tcatcatcct cgtcgtcatc
    24181 cgtggcatct gccgctttac cagcacctat ctgatgactt gggtctccgt gatgaccatc
    24241 agcaaaatcc gcaaagatat gtttgccaaa atgctgaccc tttcctcccg ctaccatcag
    24301 gaaacgccgt ccggcaccgt actgatgaat atgctcaacc tgaccgaaca gtcggtcagt
    24361 aacgccagcg acatcttcac cgtcctcacg cgcgacacga tgatcgttac cggcctgacc
    24421 atcgtcctgc tttacctcaa ctggcagctc agcctcatcg ttgtcctgat gttccccctg
    24481 ctctccctgc tctcgcgcta ctaccgcgac cgtctgaagc acgtcatttc cgactcgcaa
    24541 aaaagcatag gcacgatgaa caacgtgatt gccgaaaccc atcagggaca ccgcgtcgtc
    24601 aagctgttca acgggcaggc gcaggcggca aaccggtttg acgcggtcaa ccgcaccatc
    24661 gtccgcctca gcaaaaaaat cacgcaggca acggcggcac attccccgtt cagcgaactg
    24721 attgcctcga ttgccctcgc cgttgtcatc ttcatcgccc tgtggcaaag ccaaaacggc
    24781 tacaccacca tcggcgaatt tatggcattc atcgtcgcga tgctgcaaat gtacgcaccc
    24841 atcaaaagcc ttgccaacat cagcatccct atgcagacga tgttcctcgc cgccgacggc
    24901 gtatgtgcat ttctcgacac cccgcccgaa caggacaaag gcacgctcgc accgcagcgt
    24961 gtcgaagggc gcatcagctt ccgcaacgtc gatgtcgaat accgttcgga cggcatcaaa
    25021 gccctcgacg gcttcaacct cgacatcaga caaggcgaac gcgtcgccct ggtcggacgt
    25081 tccggcagcg gcaaatccac cgtcgtcaac ctgctgcccc gctttgtcga accgtctgcc
    25141 ggcaacatct gcatagacgg tatcgacatc gccgacatca aactcgactg cctgcgcgcc
    25201 caatttgccc tcgtctccca agacgtattc ctgtttgacg acaccctgtt tgaaaacgtc
    25261 cgatatagcc gtcccgacgc gggcgaagcc gaagtcctat ccgccctcca agccgctaac
    25321 ctgcaaagcc tgatcgacgc atcaccgctc ggactgcacc agcccatcgg atcgaacggc
    25381 agcaacttat ccggcggaca gcggcaacgc gttgccattg cccgcgccat tttgaaagac
    25441 gcgccgatat tattattgga cgaagccacc agcgcattgg acaacgaatc cgaacgcctc
    25501 gtccaacagg cgctcgaacg cctgatggaa aaccgcaccg gcatcatcgt cgcccaccgc
    25561 ctgaccacca tcgaaggggc cgaccgcatc atcgtaatgg acgacggcaa aatcatcgaa
    25621 caaggcacac acgaacaact gatgtcccaa aacggctact acacgatgtt acgcaatatc
    25681 tcaaacaaag atgccgccgt ccggacggca taaacaaaat gccgtctgaa atggtacaat
    25741 cgccccgacc ctttcagacg gcatcatatc cgccgaccca tccgattatc ttcaatcact
    25801 gtaaaaccca ttatgaccca agacaaaatc ctcatccttg acttcggttc gcaagttacc
    25861 cagctcatcg cccgccgcgt gcgcgaagcc cacgtttact gcgagctgca ttccttcgat
    25921 atgcctttgg acgaaatcaa agccttcaac cccaaaggca tcatcctttc cggcggccct
    25981 aattccgttt acgaatccga ctatcaagcc gataccggta tctttgactt gggcattccg
    26041 attttgggca tttgctacgg catgcaattt atggcgcacc acttgggtgg tgaagtgcaa
    26101 cccggcaacc agcgcgaatt cggttacgcg caagtcaaaa ccatcgacag cgagctgaca
    26161 cgcggcattc aagacgatac gccaaacacg ctcgacgtat ggatgagcca cggcgataaa
    26221 gtttccaaac tgcctaccgg tttcaccgtc atcggcgaca cgccgtcctg cccgattgcc
    26281 atgatggaaa acgccgaaaa acaattctac ggcatccaat tccaccccga agtaacccac
    26341 accaaacaag gccgcgccct gttgaaccgc tttgtcttgg atatttgcgg cgcgcaacct
    26401 agctggacga tgccgaacta catcgaagaa gccgttgcca aaatccgcga acaggtcggc
    26461 agcgacgaag tgattttggg tttgtccggc ggcgtggact cttccgtagc cgccgcgctg
    26521 attcaccgcg ccatcggaga ccaactgacc tgcgtgttcg tcgatcacgg cctcttgcgc
    26581 ttgaacgaag gcaaaatggt gatggatatg ttcgcccgca atttgggtgt gaaagtgatt
    26641 cacgtcgatg ccgaagggca gtttatggag aaactcgccg gcgttaccga tcccgagaaa
    26701 aaacgcaaaa tcatcggtgc ggaatttatc gaagtatttg atgctgaaga aaaaaaactc
    26761 accaacgcca aatggctggc gcaaggcacg atttaccctg acgtaatcga atccgcaggc
    26821 gcgaaaacca aaaaagccca cgccatcaaa tcccaccaca atgtcggcgg cctgcctgaa
    26881 aacatgaagc tcaagctgct tgagccgttg cgcgatttgt tcaaagacga agtgcgcgaa
    26941 ctgggcgtgg ctttgggtct gccgcgcgaa atggtgtacc gccatccctt ccccggtccc
    27001 ggtttgggcg tgcgcatctt gggcgaagtg aaaaaagaat acgccgactt attgcgtcaa
    27061 gcagacgata tttttattca agaattacgc aacaccaccg acgaaaacgg cacgtcttgg
    27121 tacgacctga ccagccaagc cttcgccgtg ttcctgcctg tgaaatccgt cggcgtaatg
    27181 ggcgacggac gcacttacga ctacgtcgtc gcactgcgcg cagtcatcac cagcgacttt
    27241 atgaccgcac attgggctga gttgccttac tcactgctcg gacgcgtgtc caaccgcatc
    27301 atcaacgaag tcaaaggcat caaccgcgtg gtgtacgatg tcagcggcaa accgcctgcc
    27361 accatcgagt gggaataacc agcaaacagg gctgcaccgt ccggcgcagt ctttcgatta
    27421 tcggaaaaaa ggaaaaaata tgagcacaca agatttaagc ggcaaaatcg ctttggtaac
    27481 aggcgcctcg cgcggtatcg gtgcagcaat tgccgacaca ctggcggcag ccggtgccaa
    27541 agtcatcggt acggcgacca gtgagagcgg tgcggcggcg attagcgagc ggttggcgca
    27601 atggggcggc gaaggccgcg tattaaattc cgccgaaccc gaaaccgtcg aaaacctgat
    27661 tgccgacatc gaaaaaacgt tcggcaaact cgatattctg gtcaacaacg ccggcatcac
    27721 ccgcgacaac ctcctgatgc gtatgaaaga agaagagtgg gacgacatca tgcaggtcaa
    27781 cctcaaatcc gtctttcgcg cctccaaagc cgtcttgcgc ggcatgatga agcagcgcgc
    27841 cggccgtatc atcaacatca catccgtcgt cggcgtgatg ggcaatgccg gtcaaaccaa
    27901 ctatgccgcg gcaaaagcag gcttaatcgg tttctccaaa tccatggcgc gcgaagtcgg
    27961 cagccggggc attaccgtca actgcgtcgc ccccggcttt atcgataccg acatgacccg
    28021 cgccctgccg gaagaaaccc gccaaacctt taccgcccaa accgccttgg gcagattcgg
    28081 cgacgcgcaa gacattgccg atgcagtctt gttcttggct tccgatcagg caaaatacat
    28141 taccggtcaa acgctgcacg tcaacggcgg catgctgatg ccctgacggg cagccgtacc
    28201 gacaatgccg tctgaagccc tttcagacgg catttgcatt ctcaggcaaa atgaacacac
    28261 gccacacccc gccctgcccc tgcggatcag gcacaagctg agacct
//
LOCUS       DAXIFS010000006        26462 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.006, whole genome shotgun sequence.
ACCESSION   DAXIFS010000006 DAXIFS010000000
VERSION     DAXIFS010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26462
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.006"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            878..2326
                     /gene="gnd"
                     /locus_tag="ACFOCA_000228"
     CDS             878..2326
                     /gene="gnd"
                     /locus_tag="ACFOCA_000228"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019269816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HFC6987007.1"
                     /translation="MKGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTIGKVDEFLNG
                     AAKGTGIIGAYSLQDLVDKLEKPRKIMMMVRAGSVVDDFIEQLLPLLEKGDIIIDGGN
                     ANYPDTTRRTHYLAEKGILFVGMGVSGGEEGARHGPSIMPGGDERAWEAVKPIFQAIA
                     AKTPQGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDEMHRV
                     FAEWNKTELDSYLIEITAAILGYKDEGGEPLVEKILDTAGQKGTGKWTGINALDLGIP
                     LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
                     QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
                     FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
                     HTYERTDKPRGEFFHTNWTGKGGDTASTTYDI"
     gene            2389..3660
                     /gene="waaA"
                     /locus_tag="ACFOCA_000229"
     CDS             2389..3660
                     /gene="waaA"
                     /locus_tag="ACFOCA_000229"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HFC6987008.1"
                     /translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRGERFGKPYP
                     NPVTGAVWIHAVSVGETRAAQPLIRELRQRFPDAPLLMTQMTPTGRETAQVLFPDAQC
                     RYLPYDKKTWVRQFLREHRPMFGVLMETEIWPNLMKECRRAGVPLFLANARLSEKSLN
                     GYLKVRSLIRPAVASLTGCLVQTEADAARLAKLGAASVQVCGNTKYDLMPSEQMKTLA
                     GQFEKRIGDRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTAFE
                     TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
                     EPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKTLSYEGGGMQMQ
                     ARVDGFIAQHRGAGARIAEAVREAVCGHRGR"
     gene            3701..4150
                     /locus_tag="ACFOCA_000230"
     CDS             3701..4150
                     /locus_tag="ACFOCA_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family copper resistance protein"
                     /protein_id="HFC6987009.1"
                     /translation="MSIYALAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARRE
                     VEKAMSYRAVRVMPFVVGLLFASGVVMAANRYLPILGEPFATSFGTMLTLKILLAFSV
                     LAHFAIAVVKMARSTLTVGWSKYIHAVVFTHMLLIVFLAKAMFYISW"
     gene            4183..5157
                     /locus_tag="ACFOCA_000231"
     CDS             4183..5157
                     /locus_tag="ACFOCA_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFC6987010.1"
                     /translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEA
                     LAWSGLWVAVSCLFAGWLYFELAGNLGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
                     LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVRQFEWILYLFGAFLLYTG
                     IHMMKPEGDEEEDLANSRLLNAVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
                     ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
                     FVLGFIGVKMLVMHWVHIPISVSLSVVFGALGASILTSLIYTKKQPDK"
     gene            5226..5301
                     /locus_tag="ACFOCA_000232"
     tRNA            5226..5301
                     /locus_tag="ACFOCA_000232"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5259..5261,aa:Lys,seq:ttt)
     gene            5521..6774
                     /gene="murA"
                     /locus_tag="ACFOCA_000233"
     CDS             5521..6774
                     /gene="murA"
                     /locus_tag="ACFOCA_000233"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFC6987011.1"
                     /translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
                     PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
                     LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDV
                     VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMIVEGV
                     DELHGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
                     DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
                     PELNRMGANITTEGNTAFVQGVERLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
                     HLDRGYENIEKKLGSVGAKIERVSG"
     gene            6855..8033
                     /locus_tag="ACFOCA_000234"
     CDS             6855..8033
                     /locus_tag="ACFOCA_000234"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFC6987012.1"
                     /translation="MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASLASI
                     QYCMDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGGLLGKNVKVLNDWRENKPAL
                     NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
                     VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
                     ANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFTADAEAV
                     VKDIADVAEDDMILDIGPKSAAELADLLKAAGTVVWNGPVGVFEFDQFAGGTKALAEA
                     IAQSKAFSIAGGGDTLAAIAKFGVTDQIGYISTGGGAFLEFLEGKELPAVAALEKRGA
                     "
     gene            complement(8100..8348)
                     /locus_tag="ACFOCA_000235"
     CDS             complement(8100..8348)
                     /locus_tag="ACFOCA_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6987013.1"
                     /translation="MLTSEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
                     ARHRLIKDGLKAQLESNELHALSISVAATPAEWAAKAQ"
     gene            complement(8439..9356)
                     /gene="ftsX"
                     /locus_tag="ACFOCA_000236"
     CDS             complement(8439..9356)
                     /gene="ftsX"
                     /locus_tag="ACFOCA_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HFC6987014.1"
                     /translation="MSIIHYASLHIESARTALKELLRQPFGTLLTLLMLAVAMTLPLF
                     MYLGIQSGQSVLGKLNESPQITVYMETAAAQSDSDTVRSLLARDKRIANVRFIGKEDG
                     LAELQSNLDQNLVSMLDGNPLPDAFIVTPDPATTPAQMQAIYRDITKLPMVESASMDT
                     EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
                     FIRRPFLYQAMWQSILSAAVSLGLCGWLLSTVRPLVDAIFKPYGLNIGWRFFYPEEIA
                     LVFGFVIALGVFGAWLATTQHLLGFKAKK"
     gene            complement(9353..10003)
                     /gene="ftsE"
                     /locus_tag="ACFOCA_000237"
     CDS             complement(9353..10003)
                     /gene="ftsE"
                     /locus_tag="ACFOCA_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFC6987015.1"
                     /translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTV
                     LKLISGITKPSRGKVHFNNQDLGTLTDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
                     PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLI
                     ADEPSANLDRAYALDIMELFKTFHEAGTTVIIAAHDETLMADYGHRILRLSKGRLA"
     gene            complement(10197..10679)
                     /locus_tag="ACFOCA_000238"
     CDS             complement(10197..10679)
                     /locus_tag="ACFOCA_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFC6987016.1"
                     /translation="MKYLNLAAIALAATFAAHTASADELAGWKDGTAQSLQSLKAPVR
                     IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
                     RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTEAVKLAHSKCR
                     "
     gene            10803..11156
                     /gene="arsC"
                     /locus_tag="ACFOCA_000239"
     CDS             10803..11156
                     /gene="arsC"
                     /locus_tag="ACFOCA_000239"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271974.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA];
                     GO_process: GO:0046685 - response to arsenic-containing
                     substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HFC6987017.1"
                     /translation="MPEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
                     KDIFNKLGLASARGMMRVKDDLYKELGLDNPDLDNDALLRAIAEHPALLERPIVLANG
                     KAAVGRPLENIEAIL"
     gene            11153..11809
                     /locus_tag="ACFOCA_000240"
     CDS             11153..11809
                     /locus_tag="ACFOCA_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HFC6987018.1"
                     /translation="MNKRLFCSRNGLRYYLLGGFCLSVFPLLLVFASSVWAVYRTGGQ
                     VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYM
                     TEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIDSVVIVSDPYHLA
                     RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGSRFLGWLSD
                     "
     gene            11925..13319
                     /gene="gltX"
                     /locus_tag="ACFOCA_000241"
     CDS             11925..13319
                     /gene="gltX"
                     /locus_tag="ACFOCA_000241"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFC6987019.1"
                     /translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
                     DLARSTAESVNIILDGMKWVGLNYDNADNVVYQTRRFDRYKEVIAELLEKGHAYYCYC
                     SKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPAGVQPVVRFKTPLDGVTKWADL
                     VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
                     LKAIGANLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
                     HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITTNEKLAEMVKPRLA
                     LRDIHETSKPALEDVLALVKDRAQDLNALADECLYFYKKQVPAEADVAKHWDDEASAR
                     MLRFAERLEGLEDWNTEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
                     ALIGKEEVLKRIRA"
     gene            13340..13735
                     /locus_tag="ACFOCA_000242"
     CDS             13340..13735
                     /locus_tag="ACFOCA_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987020.1"
                     /translation="MPSDVGIRLQTAFKRKLKMKKIFYFLMVVFSTSVWAGDAEDNLL
                     SIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQAAQADIARLEAEIPAAMAQKARQ
                     AEELRQIGVRLDHAWNAVYGAGGTKASGN"
     gene            13739..14230
                     /locus_tag="ACFOCA_000243"
     CDS             13739..14230
                     /locus_tag="ACFOCA_000243"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6987021.1"
                     /translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIH
                     AYYGRCLKDDELPLAFAAVDDSGILLGSATVKRHDMESFPQYEYWLGDVFVLPEYRGK
                     GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWAVVGRHFHNGEWVTVMRLDM
                     DKV"
     gene            complement(14353..16935)
                     /gene="mutS"
                     /locus_tag="ACFOCA_000244"
     CDS             complement(14353..16935)
                     /gene="mutS"
                     /locus_tag="ACFOCA_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HFC6987022.1"
                     /translation="MSKSAVSPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAA
                     KLLDITLTTRGQVDGEPVKMAGVPFHAAEQYLARLVKLGKSVAICEQVGEVGAGKGPV
                     ERKVVRIVTPGTLTDSALLEDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLKLDDE
                     LARLQAAEILLPDSKNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLD
                     GKEHAVAIGAAGALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLS
                     GKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQYKPLQCRL
                     KNIADIERIAARIAVGNARPRDLASLRDSLFELAQIDLSANGSSLLETLKAVFPENLS
                     TAEQLRQAILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGL
                     STLKVEFNRVHGFYIELSKTQAEQAPADYQRRQTLKNAERFITPELKAFEDKVLTAQE
                     QALALEKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYP
                     VIHIENGRHPVVEQQVRHFTANHTDLDHKHRLMLLTGPNMGGKSTYMRQVALIVLLAH
                     TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMD
                     EVGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALE
                     QGQDIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDI
                     FSTMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLKDLC
                     KSVS"
     gene            17379..18383
                     /gene="gap"
                     /locus_tag="ACFOCA_000245"
     CDS             17379..18383
                     /gene="gap"
                     /locus_tag="ACFOCA_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6987023.1"
                     /translation="MSIKVAINGFGRIGRLALRQIEKAHDIEVVAVNDLTPAEMLLHL
                     FKYDSTQGRFQGTAELKDDAIVVNGKEIKVFANPNPEELPWGELGVDVVLECTGFFTN
                     KTKAEAHIRAGARKVVISAPSGNDVKTVVYGVNQDILDGSETVISAASCTTNCLAPMA
                     AVLQKEFGVVEGLMTTIHAYTGDQNTLDAPHRKGDLRRARAAALNIVPNSTGAAKAIG
                     LVIPELNGKLDGSAQRVPVATGSLTELVSVLERPVTKEEINAAMKAAASESYGYNEDQ
                     IVSSDVVGIEYGSLFDATQTRVMTVGGKQLVKTVAWYDNEMSYTCQLVRTLEYFAGKI
                     "
     gene            complement(18453..18572)
                     /locus_tag="ACFOCA_000246"
                     /pseudo
     CDS             complement(18453..18572)
                     /locus_tag="ACFOCA_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(18641..19321)
                     /gene="tsaA"
                     /locus_tag="ACFOCA_000247"
     CDS             complement(18641..19321)
                     /gene="tsaA"
                     /locus_tag="ACFOCA_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HFC6987024.1"
                     /translation="MTYTITPIGTARSPYKQKFGIARQPGLVSAAEVCIELNPEFTAD
                     SVRGLEDFDYVWISFIFHGVLDEGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSL
                     LKLNRIETGKPVRLYCSGADLLDGTPIVDIKPYIPFVESKPDAASGFVSGKPVELEVV
                     WQENIGAENLSANTKNLISQSIAQDPRPAYQNIPERIYVMNIADYEIRFQIEENRATV
                     IDLSPTPL"
     gene            19436..20071
                     /locus_tag="ACFOCA_000248"
     CDS             19436..20071
                     /locus_tag="ACFOCA_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HFC6987025.1"
                     /translation="MIVSIDVDAQKTFTPLCPDELPVNEGHLIVEELNAQAALADLRV
                     MTKDAHHMVAKWLVDNPVDMLKPTGLPDADLTWVAHAMVGTRGYELLDGLPSAKEYDY
                     CVWKGVDPELHPYGACFHDIEEKLSTGLIEWLRCQNTDTVIIGGLATDYCVKTTVFQL
                     LKGGNWQVIVNEAACRGIAPDTIETAWQEMSSAGAVILKNAEEIKKYINNQ"
     gene            20109..21077
                     /gene="waaC"
                     /locus_tag="ACFOCA_000249"
     CDS             20109..21077
                     /gene="waaC"
                     /locus_tag="ACFOCA_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFC6987026.1"
                     /translation="MKILLVRLSSMGDLIHTLPAIEDLARQCPDVELHWLCEAGFTDI
                     ARLHPFVKKIHVMKWRQWRKHLFQAETWREMGHLKQTLRQEAFNFVLDSQGLIKSACF
                     AKMAKSPIYGLDKNSAREGLAALAYAKTYAVPKGKNAVWRNRELFAQVFGYAMPETQV
                     FGLTVPEVGRLKNLAQPYYAALHATSRDSKLWPMENWRSLLQKLNEEQQCNIYLPWGN
                     EDEKTRAKQIADGLPFAIVCDKINLLQAAYLLKYAVGIVGVDTGLLHLANALEKPVVG
                     IYTDTDPIKTGVQVSPIAKNLGNIGQIPTADLVYQTLMDCVAADKG"
     gene            21303..22052
                     /locus_tag="ACFOCA_000250"
     CDS             21303..22052
                     /locus_tag="ACFOCA_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HFC6987027.1"
                     /translation="MKALVAVKRVVDYNVKVRVKADGSDVDIGNVKMSMNPFDEIAVE
                     EAVRLKEAGKVSEIVAVSLGEKKCEETLRTALAMGADRAIHVETDTKLESLAVAKLLK
                     AVADKENPQIFFLGKQAIDDDANQVAQMLAALLNAAQGTFASKVHIECGEVQIVREID
                     GGEETIALKLPAVISADLRLNEPRFVKLPNIMAAKKKPLEKLTPDDLVADISPRLKTV
                     KFAEPKARQAGVKVASVAELVEKLKNEAKVI"
     gene            22063..22998
                     /locus_tag="ACFOCA_000251"
     CDS             22063..22998
                     /locus_tag="ACFOCA_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HFC6987028.1"
                     /translation="MSVLIIVEHDNKQLNPTTLHAVTAAAKLGKIDLLVAGSGASAVV
                     EFAKQVAGVEKVLVADAAHYAEGLAEELAPLVVKLAVDYCYVAATATTFGKNLLPRVA
                     ALLDVPQISDLTEIVDNTTFVRPIYAGNAFETVQADSEKLVLTFRATVFDAVAAQGGN
                     AEVINVEATPAQNLSRFVNRQLSHSDRPELTQAKVIVSGGRALGSAEKFNEVLTPLAD
                     VLGAAIGASRAAVDAEYAPNDAQVGQTGKVVAPQLYFAIGISGAIQHVAGMQDSKVIV
                     AINKDADAPIFNVADYGLVGDLFEIVPQLTEVLKN"
     gene            23061..23672
                     /locus_tag="ACFOCA_000252"
     CDS             23061..23672
                     /locus_tag="ACFOCA_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFC6987029.1"
                     /translation="MITTYKTITSSTQAEFKDKGSRFIAFTYPIRTLADVKKYLDLLK
                     EEHHKARHWCYAYRLGVDGVQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYF
                     GGTLLGVPGLIHAYKEATAQALAVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQAD
                     ILERDLQLDCRLTVSLSLVNYEACVAAWKNTRQIEVNTEKPFE"
     gene            complement(23724..24041)
                     /locus_tag="ACFOCA_000253"
     CDS             complement(23724..24041)
                     /locus_tag="ACFOCA_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HFC6987030.1"
                     /translation="MQKRIDEIQSKYREWCHLLPQLEEDIRRWKYVVTLIRDMDNFYT
                     HEYQACHQAIEDGVELDLSTEGEYSIMSEDALWNALGEFHQLAWLYLRSSVDALDKYT
                     QED"
     gene            24199..25470
                     /gene="purD"
                     /locus_tag="ACFOCA_000254"
     CDS             24199..25470
                     /gene="purD"
                     /locus_tag="ACFOCA_000254"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFC6987031.1"
                     /translation="MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQ
                     NIDLTAHQDLIEFCRKENIVFTVVGPEAPLAAGIVDDFRAAGLKIFGPTQYAAQLESS
                     KDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLD
                     EAHAAIDDMLLDNKMGNAGARVVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLD
                     GDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQ
                     SGAPYTIEFNCRFGDPETQPIMSRLNSDLSDLVEAAIDGKLDSVTAEWSPQTAVGVVL
                     AAQNYPETPKKGDIISGLDAANQIGKVFHAGTTAKEKGDVLTNGGRVLCVVGLGDNVA
                     QAKAKAYGALEKISFDGMQYRKDIADKAINR"
     gene            25504..26106
                     /locus_tag="ACFOCA_000255"
     CDS             25504..26106
                     /locus_tag="ACFOCA_000255"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6987032.1"
                     /translation="MTDVLQTVFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCY
                     GLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPA
                     PKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRAC
                     RTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR"
     gene            complement(26178..>26462)
                     /locus_tag="ACFOCA_000256"
     CDS             complement(26178..>26462)
                     /locus_tag="ACFOCA_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6987033.1"
                     /translation="MPDSIVYTNSLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIE
                     NFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI"
BASE COUNT         6363 a         6080 c         7432 g         6587 t
ORIGIN      
        1 tttcatcatt ccctcaaaaa cagaaaacca aaaacagaaa cctaaaatcc cgtcattccc
       61 acgaaagtgg gaatctagaa cgtaaaatct caagaaaccg ttttcccgat aagtttccgt
      121 accgacaagg ctggattccc gcctgcgcgg gaatgacggc agagcggttt ctgttttttc
      181 cgataaatgc cgcaatctca aatcccgtca ttcccacttt cgtgggaatg acggaatgta
      241 ggttcgtggg aatgacgcgg tacaggtttc cgttacgtat ccccatccga aagtttattt
      301 atacacaagc aatccaaagt tatctgactg aaatattgtg agatttaccc gcaaatctca
      361 ttttttccac cacttaatac acaaattcgg atgcgtactc tgccaatatg cagaaaaaag
      421 atatttgtat cgacacattc tcattcctac aagttccaaa cacacttccc tctcaaatct
      481 ccacaacatt cccgttctta aaggcatcgg cagccattcg gtaaagaaaa gcggaatgcc
      541 atctgcacaa caagcaaact gtccacaaaa actattcttc atgaaaaaca atccacaggt
      601 atgcacaaaa gggaatccgc cttaccgaca cccttttaaa acggaaatcc caatgatttt
      661 taaaataaaa aaaagttacc cacagaaaat ttctcctatc aatataatca tcgttttttt
      721 atttaatttt tatattttat ttataagcct tcagggaaac gcacggtaaa gcgtaaaggc
      781 atcttttcaa aaaattaaaa agttaaggat tgttaaacaa gtgtaaatca ggtagagttg
      841 cggtcgataa attaaatcta taacggagct tcctgcaatg aaaggcgata ttggcgtaat
      901 cggtttggcg gttatggggc aaaacctgat tttgaatatg aacgattgcg gatttaaggt
      961 tgtcgcctac aaccgaacaa tcggtaaggt ggacgaattt ttaaacggcg cggcaaaagg
     1021 gacgggcatt atcggcgcgt attccctgca agacttggtc gataagctgg aaaaaccgag
     1081 aaaaatcatg atgatggttc gcgcaggttc ggtggttgac gactttatcg aacaactgct
     1141 tccgttgttg gaaaaaggcg acatcattat cgacggtggc aatgccaatt accccgacac
     1201 gacacggcgg acacattacc ttgccgaaaa agggattttg tttgtcggca tgggggtctc
     1261 cggcggagag gaaggtgcgc ggcacggccc gtctatcatg ccgggcggag atgagcgcgc
     1321 atgggaagct gttaaaccga ttttccaggc gattgctgcg aaaacccctc aaggtgagcc
     1381 gtgttgcgat tgggtcggca gggatggtgc gggacatttc gtcaaaatgg tgcataacgg
     1441 catcgaatac ggcgatatgc agttgatttg cgaagcgtac cagttcatga aagacggttt
     1501 gggactgtcc tacgacgaaa tgcaccgcgt gtttgccgag tggaacaaaa ccgagctgga
     1561 ttcttatctg attgaaatca cagcggcaat tttgggctat aaggacgaag gcggcgaacc
     1621 gctggtcgag aaaatcctcg atacggcagg gcaaaaaggc acgggcaaat ggacgggcat
     1681 caatgctttg gatttgggta ttccgttgac gctgatttcc gaagcggtat tcgcccgctg
     1741 cgtttcgtcg ttcaaagaac agcgcgtgca gaccggcaag ctgttcgccc gaaccgttac
     1801 gcccgtcgaa ggcggcaaac aagaatgggt tgaggcgttg agacaggccc tgcttgcatc
     1861 caaaatcatt tcctacgcac aaggctttat gctgatccgc gaagcgggcg aaagctacgg
     1921 ctgggatttg gactacggca acactgcgct gctgtggcgc gaggggtgca tcattcgcag
     1981 cgcattctta agcaatatcc gcgacgcgta tgaaaacaat cccgatttgg tgttcttggg
     2041 tgcggatccg tatttcaaaa atattttgga aaactgcctg ccggcgtggc gcaaggtggt
     2101 tgctaaggcg gtcgaatgcg gcatccctat gccttgcatg gcttcggcga ttacgttctt
     2161 ggacggctac acgaccgaac gtctgcctgc caatctcttg caggcacagc gcgactactt
     2221 cggcgcgcac acttacgaac gcaccgacaa accgcgcggc gagtttttcc ataccaactg
     2281 gacgggcaag ggcggagata ccgcttcgac aacctacgat atttgattcc gttgccgaaa
     2341 tgccgtccga accgttcgga cggcatttgt tttgcaggaa atagaaagat gttccaatgg
     2401 ctttatgatg tattgtggct gcttgcgccg atatggatac ggcgttattt ggacaaacgc
     2461 tccggaagtg ccccggcata tcgggcgcat cggggcgagc gtttcggcaa gccgtatccg
     2521 aatcccgtta ccggcgcggt ttggatacac gccgtttcgg tcggggaaac gcgtgccgcc
     2581 caacctttga tacgcgagtt gcggcagcgt tttcccgatg cgccgctgct gatgacgcag
     2641 atgaccccga cgggacggga aaccgcgcaa gttctgtttc ccgatgcgca atgccgctat
     2701 cttccgtatg acaaaaaaac gtgggtacgg cagtttttgc gcgaacaccg cccgatgttc
     2761 ggcgtattga tggaaacgga aatctggccc aacctaatga aggaatgccg gcgcgcgggt
     2821 gtgccgctgt ttttggcgaa tgcgcggctg tcggaaaaat cgttgaacgg ttatctgaaa
     2881 gtccgcagcc tgatccgtcc tgctgtcgct tcgctgacgg gctgtctggt acagacggag
     2941 gcggatgcgg cgcggttggc gaaattgggc gcggcatccg tgcaggtgtg cggcaatacc
     3001 aaatacgacc tgatgccgtc ggaacagatg aaaacgctgg cggggcagtt tgaaaaacgc
     3061 atcggagacc ggccggttgc cgtgtgcggc agcacgcgcg tttatcgggg tgaagacgag
     3121 gcggagaaac tgctggcggc gtggcaacaa tatcgcggcg atgccctgct ggtcgtcgtg
     3181 ccgcgccatc ccgagcattt tcagacggca tttgaaacgg caaaacgctt cgggtttaag
     3241 gttcagcggc gcagcgacgg tttgccggtc gaacccgata cgcaggtgtg gataggcgac
     3301 agtatgggcg agctgtatgc gtattacctg tgcgccgatg ttgcttttgt cggcggcagt
     3361 ctggtcgatt cgggctgtca gaacatcatc gaaccgcttt cctgcggcgt tccgacgata
     3421 ttcggctttt cgacctacaa tttttccgaa gcctgccggc acgccttggc atcgggtgcg
     3481 gcggttcaag tcgaatcggc ggacgcgtgg cgggaagccg ttgaaaaaac cttatcgtac
     3541 gaggggggcg gaatgcagat gcaggcgcgc gtggacggct ttatcgcaca acatcgcgga
     3601 gcgggcgcga gaatcgccga ggcggtgcgg gaagcggtat gcggacatcg ggggcgatag
     3661 tgatacaatc cgcatccgag ttttccggtt ggagtaccgt atgagtattt acgcacttgc
     3721 acacatcgtc catctgtatt gcgccattgc ctttgtcggc ggcgtgtttt ttgaagtgct
     3781 ggttttgtcc gtcctgcata cgggacgggt gtcgtgcgag gcgcggcgcg aagtggaaaa
     3841 ggcaatgtct taccgcgccg tcagggtgat gccgtttgtg gtcggactgc tgttcgccag
     3901 cggcgtcgtg atggcggcaa accgctacct tcctatattg ggcgaaccgt ttgccacttc
     3961 cttcggtacg atgctgacgc tgaaaatcct gttggcgttc agcgtgttgg cgcacttcgc
     4021 catcgccgtc gtcaaaatgg cgcgttccac actgacggtc ggctggtcga aatacataca
     4081 cgccgtcgtc tttacccata tgctgctgat tgtctttttg gcaaaagcga tgttttatat
     4141 cagctggtaa cacaactaca tttcaaatca ggagattgaa ccatgacaga atatcccggc
     4201 atcgggtcgc cgttgtttta cggcgttttt tttgcggcag tgctggtcat gattgccttg
     4261 gatatgtttt cgctgaagaa aaacggcagc cataaagtcg gcgtcaaaga agccttggca
     4321 tggagcggct tgtgggttgc cgtatcctgc ctgttcgcgg gctggctgta tttcgaactc
     4381 gccggcaatc tcggctacgg cgcggcagtc gcaaaagaaa aagtattgga attctttacc
     4441 ggctacattt tggaaaaatc gttggcagtc gacaatattt tcgtgttcct gatgatattc
     4501 ggctacttca aagtcgcacc acagtttcag caccgcgtgc tgctgtacgg cgtattgggc
     4561 gcattggtat tgcgcactgt catgattttc gtcggcgcgg cactggttcg gcagttcgag
     4621 tggattctgt atctgttcgg cgcgttcctg ctctataccg gcatacacat gatgaagccc
     4681 gaaggcgatg aggaagagga tttggcaaac agcaggctgc tgaatgccgt caagaaagtc
     4741 gttccggtcg gcacggaatt tcacggcgag aaatttttta ccgtcgaaaa cggcaaaaaa
     4801 atcgccacgc cgctgttttt ggtgctagtc atgattgaat tgagcgatgt cgtgtttgcc
     4861 gtggacagca tccccgccgt ctttgccgtt accaccgatc cgtttatcgt gctgacctcc
     4921 aatattttcg ccattttggg tttgcgggcg atgtatttcc tgctggcgga tgtggcggaa
     4981 cgctttatct tcctgaaata cggcttggca ttcgtgttgg gttttatcgg tgtgaaaatg
     5041 ctggtaatgc attgggtgca tatcccgatt tccgtttcac tgtcggtcgt gttcggcgcg
     5101 ttgggtgcat cgatactgac ctcgttaatt tatacgaaaa aacagcctga taaataaaat
     5161 gccgtctcaa cgccgacaaa atggttgaca gcatcaggct tgatgtatag aatttcgagc
     5221 ttgtcgggtc gttagctcag tcggtagagc agcggacttt taatccgttg gtcgagcgtt
     5281 cgaatcgctc acgacccacc agataaaaca aaaaaagctg agttttcaaa actcggcttt
     5341 ttttgttttc cgacaatcct tgttcggaaa gcgcggcatt tcgtcaaatt ctttggtgcg
     5401 gcttccgtat ttttcccgaa aatcccttat aattccgcct ctgcaacctt catcgggtga
     5461 tgctttatgc gttgtcccga gaattgaaat attacaagta cccaccagga aagaacaaac
     5521 gtggacaaac tgaaaatctc cgcaaacggc ccactcaacg gggaaataac ggtctcgggc
     5581 gcgaaaaacg cggcattgcc gctgatgtgc gcgggtttgc tgacatcggg tacgttgcgc
     5641 ctgaaaaacg tccctatgct ggcagatgtg aaaaccacgc aaaagctgct tcaggggatg
     5701 ggcgcgcgcg tcctgaccga caatatcagc gaatttgaaa ttaacggcgg cacggtaaac
     5761 aatacctgcg ccccttacga attggtacgg acgatgcgcg cctcgatttt ggtgctgggc
     5821 ccgacgctgg cgcgtttcgg cgaggcgcaa gtcagcctgc cgggcggctg cgccatcggt
     5881 tcgcgccccg tcgatcagca tttgaagggc ttggaagcga tgggggcgga aatcgtcatc
     5941 gaacacggtt acgtcaaggc caaaggcaaa ctcaaaggta cgcgcgtggc gatggatgtc
     6001 gttaccgtcg gcggcacgga aaacctgctg atggcggcga ctctggcgga aggtacgacg
     6061 gttttggaaa actgcgccat cgagcccgag gtggtcgatt tggcggaatg cctggttaaa
     6121 atgggcgcga aaatcagcgg catcggaaca tcgaccatga tcgtggaagg tgtggacgag
     6181 ctgcacggct gcgaacacag cgtcgtcccc gaccggatcg aggcggggac gttcctgtgc
     6241 gcggtggcga taaccggtgg cagggtggtt ttgcggaatg ccgcgccgaa aacgatggaa
     6301 gtggtgttgg acaaactggt tgaggcaggt gcggtgattg aggcgggcga cgattggatc
     6361 gccatcgata tgcggcagcg tccgaaggcg gtggacatcc gcacggtcgt ccaccccggc
     6421 ttccccacgg atatgcaggc gcagtttatg gcattgaatg ccgtggcgga gggaagctgc
     6481 cgcgtggtgg aaacgatttt tgaaaaccgc tttatgcacg tccccgagtt gaaccggatg
     6541 ggggcgaaca ttacaaccga gggcaatacg gcatttgtgc agggtgtgga acggctttcc
     6601 ggcgcagtcg tcaaggcgac ggatttgcgt gcgtccgcaa gcctcgttat cgccggtttg
     6661 gcggcgcgcg gcgaaaccgt ggtcgaacag atttaccact tggatcgcgg ttatgaaaat
     6721 attgaaaaaa aactcggcag cgtcggcgcg aaaatcgagc gcgtatccgg ctgatcgggt
     6781 tgcgatgccg tctgaagcct tcagacggca tcaattgttt ctgtatcgca aacactgatt
     6841 gaaaaggact gattatggca tttttaaaac tgaccgaaca aaacgtgcag ggcaaaaccg
     6901 tcctcatccg cgccgatatg aacgtgccgt tcaaagacgg caaaatcagc gacgacaccc
     6961 gtatccgcgc ctcgctcgcg tccatccaat actgcatgga caacggcgca tccgttatcg
     7021 tgatgaccca cttgggccgc ccgaccgaag gcgagttcca ccccgaagac gacgttgcgc
     7081 ccgttgccgc gcatttgggc ggcctgttgg gcaaaaacgt gaaagtattg aacgactggc
     7141 gcgaaaacaa accggctttg aacgcgggcg atgtcgtgat gctgcaaaac gtgcgtatca
     7201 acaaaggcga gaagaaaaac gatttggaac tgggcaaagc ctacgcttct ttgtgcgacg
     7261 tgttcgtcaa tgacgcgttc ggcaccgcgc accgcgccca agcctcgacc gaagccgtcg
     7321 cccaagccgc tcccgttgcc tgcgccggcg tattgatggc gggcgaactc gacgctttgg
     7381 gcaaagcctt gaaacagccc gcgcgcccga tggttgccat cgttgccggc agcaaagtgt
     7441 ccaccaagct gaccatcctc gaatcgctgg cggacaaagt cgaccaactc atcgtcggcg
     7501 gcggcattgc caacaccttc ctgttggcgg aaggcaaagc catcggcaaa tctttggcgg
     7561 aacacgattt ggtggaagaa tccaaaaaaa ttatggcaaa aatggcggcc aaaggcggtt
     7621 ctgtgccgct gccgaccgat gtcgtcgttg ccaaagcctt taccgccgat gccgaagcgg
     7681 tcgtgaaaga cattgccgac gttgccgaag acgatatgat tttggacatc ggcccgaaat
     7741 ccgccgccga gcttgccgat ttgctcaaag ctgccggtac ggttgtatgg aacggccctg
     7801 tcggcgtgtt tgagttcgat caattcgcag gcggcacgaa agctcttgcc gaagccattg
     7861 ctcaaagcaa agcattctcg attgcaggcg gtggcgacac gctggcggcg attgctaaat
     7921 tcggcgttac cgaccaaatc ggctatattt ctaccggcgg aggcgcgttt cttgagttct
     7981 tggaaggtaa agagttgcct gccgtagccg ctttggaaaa acgcggcgcg taagcggttt
     8041 gatataaaaa atgccgtctg aaacgttgtg ctgtttctga cggcattttt gtgtggcgat
     8101 tattgtgctt tggctgccca ttccgccgga gtggcggcaa ccgaaatgga aagtgcgtgc
     8161 agttcgttac tttccagttg ggctttgagt ccgtctttaa tcaggcggtg gcgcgcgagg
     8221 cgtgccttgc cttcaaattc tgatgaaacg atgacggcga aaaaatggtg tccgtcgcct
     8281 tctacttcga tatgttcgca ttttgccacg ccttcaatca tggcttttac ttgttccgag
     8341 gtcagcatgg taggttcctt gttggaaaaa tgcgccatta tactggcaaa ttgaaatgcc
     8401 gtctgaaaac gggttcggac ggcatttttg acggtgtttt attttttggc tttgaagccg
     8461 agcaggtgct gggtggtggc aagccacgcg ccgaatacgc ccaacgcgat gacgaagccg
     8521 aacaccagcg cgatttcttc aggataaaag aaacgccagc cgatattgag cccgtagggt
     8581 ttgaagatgg catcgaccaa ggggcgcact gtggaaagca gccaaccgca aagccccagg
     8641 ctgacggcgg cggaaaggat gctctgccac attgcctgat aaaggaaggg gcggcggatg
     8701 aacgatgcgg gcgcgcccaa gagtttggtg atttcgattt cttctttgcg gctgaggatt
     8761 tgcaggcgga tggtgttgtg tgcgacaagg acgaacgcca tacccagcgt cagggaaaga
     8821 aaccataaaa ttttacggat aaattcgttg atttggtaca gcgtttgcac ccattcggta
     8881 tccatagacg cggattcgac cataggcagt ttggtaatgt cccggtagat tgcctgcatt
     8941 tgcgcgggcg ttgtcgcggg gtcgggggta acgataaatg cgtcgggcag cgggttgccg
     9001 tcgagcatcg aaaccaaatt ttggtcgagg ttggactgta attccgccaa gccgtcttcc
     9061 ttgccgatga agcggacgtt ggcgatccgt ttgtcgcgcg ccagcaggct gcggacggta
     9121 tcgctgtcgc tttgtgcggc ggcggtttcc atatagacgg tgatttgcgg cgactcgttg
     9181 agtttgccca acacgctttg cccgctttga atgcccaaat acataaacag cggcagggtc
     9241 atcgcgacgg cgagcatcag gagggtgagc agcgtgccga agggttggcg cagaagctct
     9301 ttgagcgcgg tgcgggcgga ttcgatgtgc agcgaggcgt agtggatgat gctcatgcga
     9361 gtcgtccttt cgagaggcgc aggatgcggt gtccgtagtc cgccatcagg gtttcgtcat
     9421 gggcggcaat gatgacggtt gttcccgctt cgtggaaggt tttgaacaat tccatgatgt
     9481 cgagcgcgta ggcgcggtcg aggttggcgg agggttcgtc ggcaatcagc aggccgggct
     9541 ggtgaacgac ggcgcgggcg atgcacaggc gttgttgttc accgccggag agggttacgg
     9601 gatcgtccaa ttctcgtcct ttcaggccga ctttttcgat ggcgatgcgg gcgcgttctt
     9661 cggctttgcg cggcggatag ccgataatcc gaagcggcag gatgacgttt tgcaggacgt
     9721 tgcggtcgta gaggattttg tggtcttgga acacgatgcc gatgtgttgg cgcataaagc
     9781 cgatttggtt gtcggtcagt gtgccgaggt cttggttgtt gaagtggact ttgcccctgc
     9841 ttggtttggt aatgcccgaa atcagcttga ggacggtgga tttgcctgaa ccggagtgtc
     9901 ctgcgataaa aatcatctcg cctttgttga tttggaagct gacgtttttc agggcttcaa
     9961 aaccgccggg ataggttttg gaaacttgtt cgaaacggat cataggaggt cctgtaagga
    10021 agggcggcat atcgtttcgg gcggttgcgt ccgcagggat atgccgtctg aacaataggt
    10081 aagacagtgc cgattataaa gattccgcct gcttttagat agtggataag tttggcggat
    10141 atgaaggtcg ggcgggaaaa atgccgtctg aagcggcttc agacggcatc cggcgtttaa
    10201 cggcattttg aatgggcgag tttgacggct tcggtcaggc ttttttcgtt cacttccccg
    10261 gtaatggtct gcctgtatcc gcatttcggt gcttcgacga cggtaaaggg cagtacgccg
    10321 acagtgtttc cgtaggtttt cataaagttt cggctgttcg ccccggtgta acgccaaatc
    10381 gggtaggaaa caggagtttg tttgaggaag ttgccgatat tgtcggatgt gtcgagcgcg
    10441 atgccgacca tatcgacgct gccttttttc tgcgctttgt accatttgga catggcgggc
    10501 atctcttttc ggcacgggcc gcaccaagtc gcccacaggt tgacgatgcg tacgggggct
    10561 ttgagcgatt gcaggctttg cgcggtaccg tctttccatc cggcaagttc gtctgccgag
    10621 gcggtatgtg cggcaaatgt ggcggcaagg gcgattgcgg caagattcaa gtatttcatc
    10681 gttttgtcct ttgtatgttg attcgggtat tgtaaaccgt ttggtacggt tgggggcggg
    10741 atattgagta aaaccctgcg taagccgata ataaggggat tgttgagaag caaggaaatg
    10801 tcatgcctga aatcaaaatt ttccacaatc cgcgttgcag caaatcgcgt gccgccttgt
    10861 ccctattgga agaacgcggc attgctgccg aagtggtcaa atatttggat acgccgcccg
    10921 acttgtccga attgaaggat attttcaaca aattgggctt ggcatcggcg cgcgggatga
    10981 tgcgtgtgaa agatgatttg tacaaggaat tgggtttgga caaccccgat ttggacaatg
    11041 acgcgctgct gcgtgccatc gccgagcatc ccgccctgtt ggagcgtccg attgttttgg
    11101 cgaacggtaa ggcggctgtc ggcaggcctc tggaaaatat cgaagcgata ttgtgaacaa
    11161 acggctgttt tgcagccgca acggcttgcg ctattacctg ttgggcggtt tctgtttgag
    11221 tgtttttccg cttttgctgg tgtttgcctc atccgtttgg gcggtttatc ggacgggcgg
    11281 gcaggttttg ccgccgtatg tccgggcgga tgccgcgctg gtgttgggcg ccgccgcgtg
    11341 ggacaaacgc ccttccccgg ttttccgcga acgcatcaac cacgccatcg cgctttatca
    11401 gagccgcagg gtaggcaaaa tcgtgtttac gggagggcga accaaaaaag gctatatgac
    11461 cgaagccgag gtcgggcggc ggtacgcgct caaacagggg gttccggcgc gcaacatcct
    11521 gtttgaaaac acttcgcgca acacttatga aaacctgaac aacatccgtc cggttttgcg
    11581 tgccaacggt attgacagcg tggtgattgt cagcgatccc taccatttgg cgcgggcggc
    11641 ggaaatggcg gaggatttgg gtgtccgcgt ttatatgtct gccaccccga ccacgcggtt
    11701 tgatgcggga aataagaaaa aaatctttat gctgcaagag ggatatgcgt tatccctcta
    11761 ccgtttggaa aaatggggca gccgcttttt gggatggctg tctgattgaa gcggtagaaa
    11821 atgccgtctg aaacttatcc gcaggcaggg ttcggacggc atttttgatg cccaagcacg
    11881 gtaaaaccag taaaataaac gctttcaaag atttcggagc catcatgacc gtcaaaaccc
    11941 gtttcgcccc cagccccacc ggctacctgc acattggcgg cgttcgcacc gccttgtttt
    12001 cgtgggcgtt tgcccgccat cataaaggcg aatttttatt gcgcatcgaa gacaccgact
    12061 tggcgcgttc taccgccgaa tccgtcaaca tcatcctcga cggcatgaaa tgggtcggcc
    12121 tgaactacga caacgccgac aatgtcgtgt accaaacccg ccgtttcgac cgctacaaag
    12181 aagtcattgc cgaactttta gaaaaaggcc atgcctacta ctgctattgc agcaaagaag
    12241 agctggaagc catgcgcgag aaagccgaaa aagaaggcac ggcgacttac gaccgccgct
    12301 ggcggccgga agcgggcaaa accctgcccg aaatccctgc cggcgtgcaa cccgtcgtcc
    12361 gcttcaaaac gcctttggat ggcgtaacca agtgggcgga cttggtcaaa ggcgaaattt
    12421 ccatccccaa cgaagccctc gacgacctga ttatcgcacg cgccgacggc acaccgacct
    12481 acaacttctg cgtcgtggtg gacgactacg acatgggcgt tacccacgtt atccggggcg
    12541 acgaccatgt gaacaacacc ccgaaacaaa tcaacatctt aaaagccatc ggcgcaaacc
    12601 tgcccgaata cggacacctg cccatgattc tcaacgaaca aggcaaaaaa atctccaaac
    12661 gcagcggcga taccgtcgcc attaccgatt tcggcgcaat gggcatcctg cccgaagcca
    12721 tgctcaacta tctggcgcgc ttgggctggg cgcacggcga cgacgagttc tttacgatgg
    12781 aacaattcat cgaatggttt gatttgaaag acgtttcccc gtctccaagc cgtatggact
    12841 tgaaaaaact ctactggatc aacggcgaac acatcaaaat caccaccaac gaaaaactgg
    12901 ccgaaatggt gaaaccgcgc ctcgccctgc gcgatatcca tgaaacaagc aagcctgctt
    12961 tggaagacgt gttggcattg gtcaaagacc gcgcccaaga tttgaacgcc ttggcagacg
    13021 aatgcctgta tttctacaaa aaacaagtcc ctgccgaagc cgatgttgcc aaacactggg
    13081 acgacgaagc ctccgcccgt atgctgcgct ttgccgaacg cctcgagggt ttggaagact
    13141 ggaataccga agccatccac gacctgttca aacctttctg tgacgaagaa ggtattaaaa
    13201 tgggcaaact cggcatgcct ttgcgcctcg ctgtctgcgg cacggcgaag accccaagcg
    13261 tcgatgccgt gttggcatta atcggcaaag aagaagtgtt gaaacgcatc cgcgcttaag
    13321 ttatccacag gcgtgggtga tgccgtctga tgttggaata cggcttcaga cggcatttaa
    13381 acggaagtta aaaatgaaaa aaatatttta ttttctgatg gttgtttttt ctacaagcgt
    13441 atgggccggg gatgcggaag acaatctgct cagcatccaa tccggttatc gtgccttact
    13501 gcaaaaacaa aacaatctgg acggaaaaat catcgggatg cagtcggatt tggaagatgc
    13561 gcgcagacgg ttgcaggcgg ctcaggcaga catcgcccgt ttggaagcgg aaattcctgc
    13621 agcaatggcg caaaaagccc ggcaggctga agagctgagg caaatcggag tgcgtttgga
    13681 ccatgcttgg aatgcggttt acggcgcagg gggaacgaaa gcgtcgggga attgaccgat
    13741 gaattccctc tttgtggaca atactgtttt cattacacgg ctgaaagccg ggcatatcgg
    13801 caggttggtt caggcgttgt ttgaggagtg gcacggattt gaaccgtggt cttctgtgga
    13861 taagattcat gcctattacg gcaggtgttt gaaggatgac gaactgccgc tggcatttgc
    13921 ggctgtggat gattccggaa tcctgttggg ttcggctacg gtcaagcggc atgatatgga
    13981 aagttttcca cagtatgaat attggttggg tgatgtcttt gttttacctg aatatcgcgg
    14041 aaaaggcatt ggcaggaggc tggtcgccca ttgcataggc gcagcgcgtt cgctggggat
    14101 aaagttcttg tatctttata cgcctgatgt gcaaatattt tatgaatcat tcggctgggc
    14161 ggttgtcggg cgacatttcc ataacggtga atgggttacg gttatgcgtt tggatatgga
    14221 taaggtttaa gccgaatgga caaatgccgt ctgagctgtt cggacggcat ttttatgttt
    14281 ggaaacttct tgtcagataa tgtttatcca cagatttttc catatggttt gatgctgttc
    14341 cgccaacgga aattaagata cggatttgca caaatctttc agacggtaca gttctgacaa
    14401 tgcttcgcgc ggggtcaggc tgtcgggatc gagtttttcc aaggctgctg ccaatatacc
    14461 ttcaaaatgt ttttcctctg ctttgtccac aaagttgccc acattcggtt catctccttt
    14521 ttcagacggc atggtactga aaatatccag ttggggacgg tttgcggcgg cttggttttc
    14581 cagtccgttc aaatgctttt gggcggattt caatgcgcgt acaggcaggc cggcgagttt
    14641 ggcaacggcg atgccgtagc ttttgccggc gggacccggt tggatttggt gcaggaaaac
    14701 gatgtcctgt ccctgttcga gcgcggaaag gtgcatattg acggcggcgg cgtgggcttc
    14761 gggcaggtag gtcagctcga aatagtgggt agcaaacagg ctgaaggatt tgtttttttg
    14821 cagcaggtgt tcggcaacgg cgtgcgcgag ggcgaggccg tcgaaagtgg aagtaccacg
    14881 tccgacttcg tccattaaaa caaggctttg ttcggtggcg tgatgcagga tgtaggcggt
    14941 ttcgctcatt tcgaccatga aagtggagcg gttggaggcg aggtcgtccg atgcgccgat
    15001 gcgggtgaag atttgatcga tgggcccgat tgtggcggca tcggcaggca caaaacagcc
    15061 ggtgtgtgcc aataaaacaa tcagcgcgac ttggcgcatg taggtggatt tgccgcccat
    15121 attggggccg gtgagcagca tgaggcggtg tttgtggtca aggtcggtgt ggttggcggt
    15181 gaagtggcgt acctgctgtt cgacaacggg atggcggccg ttttcgatgt ggataaccgg
    15241 atagtcggca aactcggggc ggacgaagtt ccgctctttt gccaaggctg aaaatgtgga
    15301 caacacgtcc agcgcggcgg cggctttggc ggctttttga agctgcggca atgccgtctg
    15361 aaggtttttc aatacgccgt caaagagttg tttttctaag gcgagggctt gctcttgagc
    15421 agtcagcact ttgtcttcaa aggctttcaa ctccggcgtg atgaagcgtt cggcgttttt
    15481 gagggtttgc cggcgttggt agtcggcagg tgcttgttcg gcttgggttt tggacaattc
    15541 aatgtaaaag ccgtgaacgc ggttgaactc gactttgagt gtggacaaac cggtacgttc
    15601 gcgttccttg gcttccaaat ccagcaaaaa ttcgtcgcca tggttttgaa tgcggcgcaa
    15661 ttcgtccagt tcgggatgaa aaccgtggtt gatgacattg ccgtctttca gccagacgga
    15721 aggttcgggc aaaatggctt ggcggagctg ttcggctgtg gataggtttt cagggaaaac
    15781 ggctttgagg gtttccaaca ggctgctgcc gtttgcggac aagtcgattt gtgccaactc
    15841 gaacagactg tcgcgtaaag atgccaaatc gcgcgggcgg gcgttgccga cggcgatgcg
    15901 ggcagcaatg cgttcaatgt ccgcaatgtt tttcagacgg cattggaggg gtttgtattg
    15961 gctttccagc gcggcaacgg cttcttggcg cgctcggatg tgggcgcggt tgcgtaaagg
    16021 gtggtgcagc cagagagcca agaggcggct gcccatatgg gtagcgcaaa ggtcgagcgt
    16081 ggacatcagg gtcggcgatt ttttgccgga gagggtttgc gtgatttcga gattgcggcg
    16141 cgtggcggca tccataccga tatattggct gtcggtttcg agcgacaggc cgtccaaatg
    16201 ttgcggcatc aggttttgcg tcagacggat atagttcaac agtgcacctg ccgcgccaat
    16261 cgcaacggcg tgttctttgc cgtccaaacc gaagccgcgc aaatcctggc agccgaaata
    16321 ttccgtcagc agtttttccc ccgcgtcggc ggcaaactgc cacgcgttca ggcgcgtaac
    16381 acccgatgcc gtctgaagtt gcggtgcgtt tttactgtca ggcaacagaa tttccgccgc
    16441 ctgcaggcgc gccagttcgt cgtccaattt cagcttggtt ttgaattcgc cgctttgcag
    16501 cgatgcccac gccaaaccga tgtatttttt gtcgggggac acggcaacga tgcggttggt
    16561 ttccttgtct tccagcaatg cggaatcggt cagcgtgccg ggcgttacga tgcgcacgac
    16621 tttgcgctcc accggtcctt tgcctgcgcc gacttcgccg acctgttcgc aaatcgccac
    16681 gcttttgccc aacttgacca ggcgcgccag atattgttcg gcggcgtgaa acggcacgcc
    16741 tgccattttg accggctcgc catccacctg tccgcgcgtg gtcagggtaa tatccaaaag
    16801 ttttgccgct tctaccgcat cgtcgaaaaa catctcgtaa aaatcgccca tacggtaaaa
    16861 caccagtttg tcggtatgtt gcgctttgat gccgaggtat tgctgcatca ttggggaaac
    16921 ggcggatttg gacatggggc tgccttatca ttaggaaaac ggtattgtag caaaaggttt
    16981 tgtcttcgac ggaatgagac tgaccgtaag cctgtcaata aggttgtgga gacaactagg
    17041 aaaacagcaa agttatccac agaaatatta ttaagtcaaa aaacatccac gcttatctgt
    17101 cttatacagc aagtcttaaa ctcaaactta tttgacaaaa aggtaatgaa aatattggat
    17161 atttgctact tacgcacaag caggttggca atcatcaaaa tcatcattaa aattttaaat
    17221 tcaaatattg atggtaaaag ttttggaaat ctgtgcaaac agtaaaattc atctatatca
    17281 aataagcatc aagtagttag atgtaatagt ggaatgtaac tttatttcag aatacaatac
    17341 aggtattgaa atttcgtttc acagcttgga gtatatacat gagcattaaa gtagcgatta
    17401 acggtttcgg ccgcatcggc cgcctcgcat tgcgtcaaat tgaaaaagcc cacgacatcg
    17461 aagtcgtcgc cgtcaacgac ctgacccctg ccgaaatgct gctgcacctt ttcaaatacg
    17521 acagcacgca aggccgtttc caaggtactg ccgaattaaa agacgatgcc atcgtggtaa
    17581 acggcaaaga aatcaaagtt ttcgccaatc cgaatcccga agaattgcct tggggcgagt
    17641 tgggtgtgga tgtcgtcctc gaatgtaccg gcttctttac caataaaacc aaagccgaag
    17701 cccacatccg tgccggcgcg cgcaaagtcg tgatttccgc acctagcggc aatgatgtga
    17761 aaaccgtcgt atatggcgta aaccaagaca ttttggacgg cagcgaaacc gttatctccg
    17821 ctgcttcctg caccaccaac tgccttgccc cgatggcggc agtcctgcaa aaggaattcg
    17881 gcgtagtcga aggcctgatg accaccatcc acgcctacac cggcgaccaa aacacccttg
    17941 acgcgccgca ccgcaaaggc gatttgcgcc gcgcccgcgc cgccgcgctc aacatcgtgc
    18001 ccaacagcac cggtgccgcc aaggccatcg gtctggttat ccctgaattg aacggcaaac
    18061 tcgacggctc cgcccaacgc gtccctgttg ccaccggctc gctgaccgaa ttggtttccg
    18121 tcctcgaacg ccctgtaacc aaagaagaaa tcaacgccgc gatgaaagcc gccgccagcg
    18181 aatcttacgg ctacaacgaa gatcaaattg tttcttccga cgttgtcggc atcgaatacg
    18241 gttcgctctt cgatgcgacc caaacccgcg tgatgaccgt gggcggcaaa caattggtga
    18301 aaactgttgc ctggtacgac aacgaaatgt cctacacctg ccaactcgtc cgcactttgg
    18361 aatacttcgc aggcaaaatc taaggcttga acaaacctgt ggataagtaa atgccgtctg
    18421 aacacattgc gttcagacgg cattgtttat ctgtatagtg gattaaattt aaaccagtac
    18481 ggcgttacct tgccttgccg tactatttgt actgtctgcg gcttcgttgc cttgtcctga
    18541 tttaaattca atccgctata acttgatatt gcggcttatg gcgaacaaac aacagccgtt
    18601 tgttcaactg ctatgcggca aaaccggatt tttgcccgat ttaaagcggg gttggggaaa
    18661 gatcaataac ggttgcacgg ttttcctcga tttgaaatct gatttcgtaa tccgcaatat
    18721 tcatcacata aatccgttcg ggaatattct gataggcggg gcgcggatct tgggcaatgc
    18781 tttggctgat aaggtttttg gtgtttgcag ataaattttc cgcgccgatg ttttcctgcc
    18841 aaacgacttc caactctacg ggtttgccgc tgacgaaacc agatgcggca tcgggtttgg
    18901 attcgacaaa ggggatataa ggcttgatgt ccacaatcgg cgtgccgtcg agcaggtctg
    18961 cgccgctgca ataaaggcgg acgggtttgc cggtttcgat gcggttgagt tttaagagtg
    19021 atagtccgag atggttgggg cggtgggggc tgcgcgtggc gaatacgccc attttttgtt
    19081 tgccgccgag ccgtggtggg cgcaccattt gtgcccagcc ttcatccaat acgccgtgaa
    19141 aaataaaact tatccacaca taatcgaaat cttccagccc gcgcacgctg tctgcggtaa
    19201 attcgggatt cagctcgatg catacttctg cggcggagac taaaccgggc tggcgggcga
    19261 tgccgaattt ctgtttgtag ggcgatcggg cggtgccgat gggggtaatg gtataagtca
    19321 taaggttgtg gataagtttt tttggaaaaa ccttatctta tcacaatcgg ttttaccgtt
    19381 tttgggcagt aatttgttat aatacagggc attttaatcg cgttgaaata atgagatgat
    19441 tgtttccatt gatgttgatg cacaaaaaac gtttacgcca ctgtgtcctg acgaactgcc
    19501 cgtgaacgag gggcatttga ttgtcgagga gttgaatgct caagccgctt tggcggattt
    19561 gcgcgtgatg acgaaagatg cgcatcatat ggtagcgaaa tggcttgtgg ataaccctgt
    19621 tgatatgttg aagccgacag gtttgcctga tgcggatttg acttgggtgg ctcatgcgat
    19681 ggtcggtacg cgcggctatg aattattgga cggactgcct tctgctaaag aatatgatta
    19741 ttgcgtttgg aaaggtgttg atcctgaatt gcatccttac ggcgcgtgtt ttcacgatat
    19801 tgaggaaaaa ctaagcacag ggctgattga atggctgcgt tgtcaaaata cggatacggt
    19861 tattatcggt gggttagcta cggattattg tgttaaaaca acggtttttc agttacttaa
    19921 aggtggtaat tggcaggtta tcgtcaatga agcggcttgt cggggcattg cgccggatac
    19981 cattgaaacg gcatggcagg aaatgagttc tgccggtgca gtcatcttaa aaaacgctga
    20041 agaaattaaa aaatatatta ataatcaata agttaaaatt gtttcacgtg aaacatactt
    20101 cttaaaatat gaaaattttg cttgtccgtt tgtctagtat gggcgattta attcacactt
    20161 tgcccgcaat tgaggatttg gcgcgacaat gccctgatgt agaactccat tggctgtgtg
    20221 aagctggatt tacagatatt gcgcgcctgc atccgtttgt gaaaaaaatc catgtgatga
    20281 aatggcggca atggcgcaaa catctctttc aggctgaaac ttggcgggaa atgggtcatc
    20341 tgaaacagac tttgcggcag gaagcattta attttgtatt ggacagtcaa ggtctgatta
    20401 aaagcgcgtg tttcgctaaa atggcgaaat cccctattta tggtttggat aaaaatagcg
    20461 cgcgcgaggg actggctgcg ctggcgtatg cgaaaacata cgctgtaccg aaagggaaaa
    20521 atgctgtttg gcgcaatcgt gagctgttcg cccaagtatt tgggtatgcg atgcctgaaa
    20581 cgcaggtatt tggcttgact gttcctgagg taggccgtct gaaaaattta gcgcagccgt
    20641 attatgcggc tttgcatgcg accagtcggg acagtaagtt atggcctatg gaaaactggc
    20701 ggtcgttgct gcaaaagttg aatgaagaac agcaatgcaa tatttacctg ccttggggaa
    20761 atgaagatga aaaaacgcgt gccaaacaga ttgcagacgg actgccgttt gctattgtgt
    20821 gcgacaaaat aaatttattg caggcagcgt atctgctgaa atacgcggtc ggaattgtcg
    20881 gcgtggatac cggtttgctg catttggcaa atgccttgga aaaacctgtg gtcggcattt
    20941 ataccgatac cgatccgatt aaaacaggcg ttcaggtttc gccaattgca aaaaatttgg
    21001 gcaatatcgg gcagattccg accgcagatt tggtttatca aacgttgatg gattgtgttg
    21061 cagcagacaa aggctaaagg gttgtctgaa actgatatag cacctgatat ttttcagttt
    21121 gttaagcata agaatgtata tctaccagcc tgagtaaatg ctttaaaaat ggtataatcg
    21181 gcaagcatta tccgaaagat ttttgaatga attcgttttt aaggaaaacg gatttggttt
    21241 tatagggaag aaggtttggt ttcgctggat ggtgaaagca gcgttctttt taggagggtt
    21301 caatgaaagc actggtcgca gtaaagcgcg tagtggacta caacgtcaaa gttcgtgtaa
    21361 aagccgatgg ttcggatgtg gatatcggca atgtcaaaat gtcgatgaat ccgtttgacg
    21421 aaatcgctgt ggaagaagct gtccgtttga aagaagccgg aaaagtaagc gaaatcgtag
    21481 cggtttcttt gggtgagaaa aaatgcgaag aaaccttgcg tacagctttg gcgatgggtg
    21541 ccgaccgtgc cattcatgtt gaaaccgata ctaaactgga gtctctggcc gttgctaagt
    21601 tgctgaaagc cgttgcggac aaagaaaatc cgcaaatttt ctttttgggc aaacaagcga
    21661 ttgatgatga tgccaatcaa gtggcgcaaa tgctggcagc tttgctgaat gcggcgcaag
    21721 gtacgtttgc ttcaaaagta cacattgaat gtggtgaagt acagattgtg cgcgaaattg
    21781 atggcggcga agaaaccata gcattaaaac tgcctgctgt tatcagtgct gatttgcgtt
    21841 tgaacgagcc gcgctttgtc aaactcccca atattatggc ggcaaagaaa aaacctttgg
    21901 aaaaactgac tcctgacgat ttggttgccg acatttcacc tcgtttgaaa acggtgaaat
    21961 ttgccgaacc taaggcgcgt caggcaggcg taaaagtagc aagcgttgcc gaattggttg
    22021 aaaaattgaa aaacgaagcc aaagtgattt gaggaggctg aaatgagtgt attgattatt
    22081 gtcgaacacg acaacaaaca gttgaatcct accactttgc atgctgttac cgctgccgct
    22141 aagctgggta aaatcgattt attggttgcc ggaagcggtg catctgctgt ggtagagttc
    22201 gcaaaacaag tggcgggtgt ggaaaaagtt ttggttgcag atgctgccca ttatgccgaa
    22261 ggtttggctg aagagttggc tccgctggtt gttaaattgg cagtggatta ctgctatgtt
    22321 gcagcaacgg caactacatt cggtaaaaac cttttgcctc gcgtagcagc cttattagac
    22381 gtaccgcaaa tttctgattt gaccgaaatt gtggataaca cgacttttgt gcgccccatt
    22441 tatgcgggta atgcatttga aaccgtgcaa gctgattcag aaaaattggt gctgaccttc
    22501 cgtgcgacgg tttttgacgc agtggcggcg caaggtggta atgctgaggt aattaatgtt
    22561 gaagcaaccc ctgcccaaaa cctgagtcgt tttgttaacc gtcagctttc ccattccgat
    22621 cgtcctgaac tgactcaggc aaaagtgatt gtttccggtg gtcgtgcgtt gggtagtgcg
    22681 gaaaaattca atgaagtgct gacaccgttg gcggatgttt taggtgcggc aatcggtgca
    22741 tcccgtgcag cagttgatgc cgaatatgcg ccaaacgatg ctcaagtcgg acaaaccggt
    22801 aaagtggttg cgccgcaact ctattttgca atcggtattt caggtgcaat tcaacacgtt
    22861 gccggtatgc aagacagtaa ggtgattgtt gcaatcaata aagatgctga tgcgccgatt
    22921 ttcaatgtag ccgattacgg attggttggc gatttatttg aaatcgttcc acaattaaca
    22981 gaagtattga aaaattgatg tttcacgtga aactttcaga cgaccttgtt attaatgagg
    23041 tcgtctgaaa acatttcagc atgattacga cttataaaac cattacttcc tcgacgcagg
    23101 ctgagtttaa agataaaggc agccgtttta ttgcatttac ctatccgatt cggacattgg
    23161 ctgatgtgaa aaaatacctc gatctgttaa aggaagagca tcataaagca cgacactggt
    23221 gctatgccta tcgtttgggt gtggatggtg tgcaatttcg tgccaacgat gatggagagc
    23281 catcaggaag tgctggacga ccaattttgg gacagattga ttcggtgggt attaccgacg
    23341 ttttggttgt ggtcgtccgc tatttcggtg gtactttgtt aggtgttcca ggtctgatac
    23401 atgcgtacaa agaggcgacg gctcaagcgt tggcagttgc agaagtagtt gaaaagaata
    23461 ttgaaaaaac tgtttggctg aaatgtgaat atccgttttt gaatgaagcg atacgcattg
    23521 ccaaacaata tcaggcggat atattggagc gggatttgca gttggattgc cgattgacgg
    23581 tcagtttgtc gttggtaaat tatgaggcct gtgttgcggc ttggaagaat actcggcaga
    23641 ttgaagtaaa tacggaaaag ccttttgaat gaaaggtcgt ctgaaatgct ttgtgatggt
    23701 atttcagacg acctcttcgc tgactaatct tcttgtgtat atttgtctaa ggcatcgacg
    23761 ctggagcgca aatataacca agccaattga tggaattcgc ccagcgcgtt ccatagcgca
    23821 tcttcactca taatgctgta ttcgccttcc gtactcaaat ccagttctac cccgtcttca
    23881 atagcctgat gacacgcctg atactcgtgg gtatagaaat tgtccatgtc gcgaattaaa
    23941 gtgacgacat atttccaacg gcggatgtct tcttccagtt gcggtagtaa atgacaccat
    24001 tcgcggtatt tgctttggat ttcatcaata cgtttttgca tggttgcttg tcctttttta
    24061 atttatggat aagttgaata ggttgcagag tggaatgaag cggtcttttg tttgattcta
    24121 ctaaaatttc ttcagatggg ataaaagtcc ctttgtatcg agttttcgtt aaaagtacat
    24181 atttgtcaag gagatggtat gaaactgctg gttatcggta atggcggtcg cgaacacgcg
    24241 ctggcttgga aattggcgca gtcgcctaaa gtggaaacag tatttgttgc gcctggtaat
    24301 gccggtacag cgattgaacc caagttgcaa aacatcgact tgactgcgca tcaggatttg
    24361 attgaattct gtcgtaaaga aaatattgtt tttaccgtcg tcggccctga agcgcctttg
    24421 gcggcaggta ttgtggatga tttccgtgct gcaggactaa aaatattcgg tccgacacaa
    24481 tatgcggcgc agttggaaag ttccaaagat ttcgccaaag catttatggc gaaatacaat
    24541 attccgaccg cgcaatatca aacctttgaa aacgccgatg ccgcacatga ttacgtcaat
    24601 cagaaaggtg cgcctatcgt tatcaaagcc gatggtttgg cggcaggtaa aggcgtgatt
    24661 gtggcgatga ctttggatga agcgcatgct gcgattgatg atatgctgct ggacaacaaa
    24721 atgggcaatg ccggcgcgcg tgttgtaatt gaagatttcc tgcaaggcga agaagcgagt
    24781 tttatcgtca tggttgatgg caataatgta ctgcctatgg caaccagcca agaccacaag
    24841 cgtcttttag acggcgacaa aggtctgaat acgggcggta tgggtgcgta cagccctgcg
    24901 cctgtggtaa cgcctgttgt gtacgaacgc gcgatgaatg aaattatttt gccgaccgta
    24961 gcagggatga aagcggaggg gcatgagttc accggtttcc tgtacgcagg tttgatgatt
    25021 gatcaaagcg gtgcacccta tacgattgag tttaactgcc gtttcggcga tcctgaaacc
    25081 cagccgatta tgagccgact gaacagcgac ttatcggatt tggttgaagc ggcaatagac
    25141 ggcaaactcg atagcgtaac cgcggaatgg agcccgcaaa ctgccgtggg cgtggtactg
    25201 gcggcgcaaa attaccccga aacgcccaaa aaaggcgata ttatttccgg tctggatgct
    25261 gccaaccaaa tcggcaaagt tttccatgca ggtacaacgg caaaagagaa aggtgacgta
    25321 ttgaccaacg gcggacgcgt attgtgtgtt gtgggattgg gcgacaatgt ggcgcaagcg
    25381 aaagctaagg catatggcgc gttggaaaaa atcagtttcg acgggatgca ataccgtaaa
    25441 gacattgccg ataaagcgat taaccgttaa ctagaaagag gatgatgccg tctgaagcca
    25501 agtatgactg atgtgcttca gacggtattt tatattatgt tatttccgag aattatcgca
    25561 gcatcagcgc aacgtaagtt aagcgtttat ttgaaaaaag gcggtttggt cgcttatccg
    25621 accgaatctt gttatggctt ggggtgtctt ccgacattag ccaaagcact cggtaagttg
    25681 gcgcatttga aaaaaagacc gcaacacaag ggtatgattg tcatcgggaa tcaatttgag
    25741 caattgcagc ctttacttca aatgccgtct gaaaatctgc aggatatgct tagaaaagaa
    25801 tggcccgccc ctaaaacgtt cctattatcc gccaaatcct gtgtcttacc tgagttgcgc
    25861 gggaaacagc gcagcaagtt ggcggtcagg gttcccgccc atgtaggtgc gcgccgcttg
    25921 tgtcaggctt tgcaaacgcc tttggtctcg acttcgtgca accgcgcagg caaacgcgcg
    25981 tgtcggacgg agagggaagt cagaaggcaa ttcggacgcg atgtgtggat tgttggtggg
    26041 agaatcggca ggcagaaatc gccgagtcag attattgacg gggaaacagg taaacgtttg
    26101 cgttagatat gggtatttga atgaaaactt tttttgcata cacaaagaaa aaattttggg
    26161 gctgtactag attagcccta aatcccacac caatcccgca ggattttaag ctgttgagac
    26221 ggtgtgccga agttaaatcg aaattcgcat tctttcaaga acagcgggaa agatttgcga
    26281 tcgattccat tgtattttcg caagacgcgt tttgcctgat tccaaaagtt ctcaatgccg
    26341 ttaatgtggt tttgacggtc tgcaaactcc ttggaatggt taatgcggta atggataaaa
    26401 ccgctcacgt ccaacttgtc gcagctgctc agactattgg tataaacaat gctgtccggc
    26461 at
//
LOCUS       DAXIFS010000007        26155 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.007, whole genome shotgun sequence.
ACCESSION   DAXIFS010000007 DAXIFS010000000
VERSION     DAXIFS010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26155
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.007"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(68..1366)
                     /locus_tag="ACFOCA_000257"
     CDS             complement(68..1366)
                     /locus_tag="ACFOCA_000257"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFC6987034.1"
                     /translation="MAKNVVVIGAQWGDEGKGKIVDWLAEEAGGVVRFQGGHNAGHTL
                     VVGGKKTILRLIPSGILHESLDCFIGSGVVVSPEALLGEIDELNAAGVKNVEGRLKIA
                     PTCPLILPYHIALDQAREASRGKGKIGTTGRGIGPAYEDKVARRAIRAADLLHPEKLR
                     EKLDAILAYYNVQLQHLHNAEPVKAEDVMAVIEKVALRIAPMITDVSRVLNEKNKNGE
                     KLLFEGAQGALLDIDYGTYPFVTSSNCLAGAASAGAGVGPQMLDYVLGIVKAYTTRVG
                     SGPFPTELFDEVGAGLAERGHEFGSVTGRARRCGWFDAAALKRSIQINGISGMCITKL
                     DVMDGVETINICVGYELPDGGKTDILPCGSDAVETCKPIYETMPGWRESTFGVKSYDA
                     LPANAKAYLKRIEEVCGAPVAIVSTGPDREETIVLHHPFA"
     gene            complement(1470..2621)
                     /locus_tag="ACFOCA_000258"
     CDS             complement(1470..2621)
                     /locus_tag="ACFOCA_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HFC6987035.1"
                     /translation="MQTWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPL
                     MEYAHSLLTHIDAGLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLLSANQGINRL
                     CYAGPVLHAQPDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLS
                     LGHIGIFRALSDAAHLDAGQSATLLALMQDKDTGTVEAQVKAWKLDGMWAKAFSLLPR
                     LYGGREVLSDARGRLPDLSAVGGALDELQAVCDAFPDCEIHIDLSELRVDNYHTGLLY
                     AAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPTSERQPAVLVDAE
                     DAEAAREAVEALREQGQCVVIDYGIGHNVSEELAGRLKKTDGVWQVVKR"
     gene            2956..4335
                     /gene="norM"
                     /locus_tag="ACFOCA_000259"
     CDS             2956..4335
                     /gene="norM"
                     /locus_tag="ACFOCA_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter NorM"
                     /protein_id="HFC6987036.1"
                     /translation="MLLDLNRFSFSVFLKEVRLLTALALPMLLAQVAQVGIGFIDTVM
                     AGGAGKEDLAAVALGSSAFATVYITFMGIMAALNPMIAQLYGAGKTDEVGETGRQGIW
                     FGLFLGVFGTVLMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYA
                     SSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGLATMAVLWFSALALW
                     IYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFG
                     EDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVLGWML
                     AVITVLSLVLFRSPLVSMYNNDPAVLSIAATVLLFAGLFQPADFTQCIASYALRGYKV
                     TKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAIALVWCLELCSR
                     EMVRSHKAV"
     gene            4514..5554
                     /gene="murB"
                     /locus_tag="ACFOCA_000260"
     CDS             4514..5554
                     /gene="murB"
                     /locus_tag="ACFOCA_000260"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFC6987037.1"
                     /translation="MQPIRYRTDLTPYNTFGLRAQARAFIALEHADGLRDIVRLPEFN
                     RDTVLWLGGGSNILLMEDYAGLVVHMENKGIREIARSDGMVLIEAQAGEIWHDFVLHA
                     VALGLNGLENLSLIPGTVGASPVQNIGAYGVEAKDVIHSVRCFDLDTETFVTLSNADC
                     RFAYRESLFKQEGKGRYVIVSVVFALKTHFVPNLGYGDLAAAVAELSAGRVPTAKDVS
                     DAVCAIRNSKLPNPNVLGNVGSFFKNPVVSAEKAATLLQRHPDMPRYPQPDGSVKLAA
                     GWLIDQCRLKGFQIGGAAVHDRQALVLVNKNNASANDVRQLAQHIKFTVFARFQVELH
                     AEPNWLPASFSL"
     gene            5566..6216
                     /locus_tag="ACFOCA_000261"
     CDS             5566..6216
                     /locus_tag="ACFOCA_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HFC6987038.1"
                     /translation="MPVTRPAKINTYTRIIDASLALFNEEGERNISTNHIAAHLGISP
                     GNLYYHFRNKDEIIVQLFKRYSEALLEYLNEAVLPSDVEDSINYMAGIYDVMWEYRFL
                     FSDVNTLLARSAELLGEHNTFTQAKVSPLLVNLLTQLNGLNIIQADQTAMNDLAVNMW
                     MITKYWFDFDSSLRGRTKLTEDSKARGIRRTLSLLRPYLLPEHREKYDRKIGNGNP"
     gene            6271..7047
                     /locus_tag="ACFOCA_000262"
     CDS             6271..7047
                     /locus_tag="ACFOCA_000262"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6987039.1"
                     /translation="MRAVPPPHISITGLGYLGLPLAQKFYQHGSRVAAIKRSLTSDDI
                     NLPIHLDTFDLGSTDAFQTALWRHHADKPVWFFLLPPSSLTHYADTVKQWAELARACN
                     VQHLIFTSSTSVYGDTARECDETATPDPQTESARQILAAEQHLLDSGISNIDILRLGG
                     LYCAERHPVSRLVQKQNIPGGNRPINIVHRNIAVESLFQTAFNPGGRRLKNIIEPRHP
                     TRREFYTEEAAKLGLPAPDFAPDDSMGKIIRTVCDNSLSL"
     gene            7098..7664
                     /locus_tag="ACFOCA_000263"
     CDS             7098..7664
                     /locus_tag="ACFOCA_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032934 - sterol binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HFC6987040.1"
                     /translation="MSALLPIINRLILQSPDSRSELAAFAGKTLTLNIAGLKLAGRIT
                     EDGLLSAGNGFADTEITFRNSAVQKILQGGEPGAGDIGLEGDLILGIAVLSLLGSLRS
                     RASDELARIFGTQADIGSRAADIGHGIKQIGRNIAEQIGGFSRESESANIGNEALADC
                     LDEISRLRDGVERLNERLDRLERDIWID"
     gene            7684..8574
                     /locus_tag="ACFOCA_000264"
     CDS             7684..8574
                     /locus_tag="ACFOCA_000264"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFC6987041.1"
                     /translation="MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGI
                     KEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIALRAVPIIGINQGH
                     LGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKTAERAIALNDAVLSRGG
                     AGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP
                     QSMTNRPIAIPDTSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHP
                     TDYQYFKTLRQKLHWGEQLV"
     gene            8599..9357
                     /locus_tag="ACFOCA_000265"
     CDS             8599..9357
                     /locus_tag="ACFOCA_000265"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6987042.1"
                     /translation="MNPKISSDHTEDAVRLSKRMAQLGLCSRREADGYIEQGWVTVNG
                     KTAVLGQKVSPADRIELNKKAHEQQAARITILLNKPVGYVSAQAEKGYKSAAELITPE
                     NRWEGDTGRIRFDPKHKIGLAPAGRLDIDSVGLLVLTQDGRIAKQLIGENSGSEKEYL
                     VRVRGKLDEKGLALLNHGLSLDGEKLRPAQVEWQNEDQLRFVLKQGKKRQIRRMCELV
                     GLRVVGLKRIRMGKVKLGRLPPGKWRYLAPGESF"
     gene            complement(9412..10077)
                     /locus_tag="ACFOCA_000266"
     CDS             complement(9412..10077)
                     /locus_tag="ACFOCA_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6987043.1"
                     /translation="MTVLDREQVLSAFKNRKSCRHYDAARKISAEDFQFILELGRLSP
                     SSVGSEPWQFVVVQNPEIRQAIKPFSWGMADALDTASHLVVFLAKKNARFDSPFMLES
                     LKRRGVTEPDAMAKSLARYQAFQADDIKILDDSRALFDWCCRQTYIALGNMMTGAAMA
                     GIDSCPVEGFNYADMERVLSGQFGLFDAAEWGVSVAATFGYRVQEIATKARRPLEETV
                     IWA"
     gene            complement(10190..10963)
                     /gene="folE2"
                     /locus_tag="ACFOCA_000267"
     CDS             complement(10190..10963)
                     /gene="folE2"
                     /locus_tag="ACFOCA_000267"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HFC6987044.1"
                     /translation="MNTIADVQSSRDLRNLPINQVGIKDLRFPITLQTAEGIQSTVAR
                     LTMTVYLPAEQKGTHMSRFVALMEQHAEALDFAQLRRLTAEMVALLDSRAGKISVSFP
                     FFRKKTAPVSGIQSLLDYDVSLTGEMKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHN
                     QRSHVTVSLTADAEVGIEEVIDYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDM
                     VRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAYP"
     gene            11154..12311
                     /locus_tag="ACFOCA_000268"
     CDS             11154..12311
                     /locus_tag="ACFOCA_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFC6987045.1"
                     /translation="MKFATQAIHSGYDCDEHNRALMPPIYQNSMFALHEIGENVPYRY
                     SRLSNPTRQVLEDTVADLEHGAAGFAFSSGMAGIDAVWRTFLQPGDTIVAVADIYGGA
                     YDLLVDVYQKWGVNVVFADLGNLDNLDKLLKAHKVKLVWLETPSNPLLRLVDIKALAA
                     KAKAAGALVGIDNTFATPYLQQPLDMGCDFVFHSATKYLCGHSDVLMGIVVAKTKELA
                     QPLHDMMVHTGAVAGPMDCWLVLRGIKTLALRMNAHCQNALEIARRLEAHPAIEKVFH
                     PGLPSHEHYELAQAQMPKGIGGVVTVYLKNDTREAANSVIKNMKLVKMASSLGGVESL
                     VNHCYSQSHSGVPHNVKMEMGIKVGLLRFSIGIEDADDIWNDISAALDTTL"
     gene            complement(12374..13375)
                     /gene="hemB"
                     /locus_tag="ACFOCA_000269"
     CDS             complement(12374..13375)
                     /gene="hemB"
                     /locus_tag="ACFOCA_000269"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFC6987046.1"
                     /translation="MQFPYRNVPASRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLE
                     GSAREEDVPSMPGVKRQSLDRLLFTAEEAVKLGIPMLALFPVVTANKTERAQEAYNPE
                     GLVPSTVRALRERFPELGIMTDVALDPYTVHGQDGLTDENGYVMNDETVEVLVKQALC
                     HAEAGAQVVAPSDMMDGRIGAIREALEDAGHIHTRIMAYSAKYASAFYGPFRDAVGSS
                     GNLGKADKKTYQMDPANTDEALHEVALDIQEGADMVMVKPGLPYLDVVRRVKDEFGVP
                     TYAYQVSGEYAMLQAAVANGWLDGDKVVLESLLAFKRAGADGILTYYAIEAAKMLKR"
     gene            complement(13558..13842)
                     /gene="yhbY"
                     /locus_tag="ACFOCA_000270"
     CDS             complement(13558..13842)
                     /gene="yhbY"
                     /locus_tag="ACFOCA_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HFC6987047.1"
                     /translation="MTDTKLNTKEILELKARAHHLHPVVMVGQQGLTDAVIKETDAAL
                     TAHELIKVRVFGDDRAERIEICTALCEAVDAQPVQHIGKLLVLWRKNIEG"
     gene            13952..14572
                     /locus_tag="ACFOCA_000271"
     CDS             13952..14572
                     /locus_tag="ACFOCA_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HFC6987048.1"
                     /translation="MAVRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKD
                     KLIKPGTVLADLGSAPGSWSQVAAKLTGTSGAVFALDILPMEAIGGVSFIQGDFREND
                     VLAQFEGLLNNRPLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFL
                     VKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYLLGKNKR"
     gene            14636..16603
                     /gene="ftsH"
                     /locus_tag="ACFOCA_000272"
     CDS             14636..16603
                     /gene="ftsH"
                     /locus_tag="ACFOCA_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFC6987049.1"
                     /translation="MGNTFKSILVWVALGIGLMAAFNALDGKKEDNGQIEYSQFIQQV
                     NNGEVSGVNIEGSVVSGYLIKGERTDKSTFFTNAPLDDNLIKTLLDKNVRVKVTPEEK
                     PSALAALFYSLLPVLLLIGAWFYFMRMQTGGGGKGGAFSFGKSRARLLDKDANKVTFA
                     DVAGCDEAKEEVQEIVDYLKAPNRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG
                     VPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN
                     DEREQTLNQLLVEMDGFESNQTVIVIAATNRPDVLDPALQRPGRFDRQVVVPLPDIRG
                     REQILNVHSKKVPLDESVDLLSLARGTPGFSGADLANLVNEAALFAGRRNKVKVDQSD
                     FEDAKDKIYMGPERRSMVMHEDEKRATAYHESGHAIVAESLPFTDPVHKVTIMPRGRA
                     LGLTWQLPERDRISMYKDQMLSQLSILFGGRIAEDIFVGRISTGASNDFERATQMARE
                     MVTRYGMSDKMGVMVYAENEGEVFLGRSVTRSQNISEKTQQDIDAEIRRILDEQYQIA
                     YKILDENRDKMETMCKALMEWETIDRDQVLEIMAGKQPSPPKDYSHNLRENADAAEDN
                     APHAPTREETEAPAPADTASTESEQQPENKA"
     gene            16824..17255
                     /locus_tag="ACFOCA_000273"
     CDS             16824..17255
                     /locus_tag="ACFOCA_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HFC6987050.1"
                     /translation="MKKVEKNILVLHGADKMFELVDKVEDYPHFLPWYSKTEVIGRSG
                     NELKARLFMDYMHVRQSFATHNRNIPGREIRMELLEGPFKTLRGTWKFIDLGDDMCKI
                     EFNLEYDFSNAVLSALISPVFNHLSVTLVEAFVKEADRRYA"
     gene            17248..17526
                     /locus_tag="ACFOCA_000274"
     CDS             17248..17526
                     /locus_tag="ACFOCA_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HFC6987051.1"
                     /translation="MLEIEIVYGLPDRQVLKTMQLAEGTTVRAAALQSGLDGIFEDLN
                     LHSAPLGIFGKAVKDDTPLRDGDRIEVYRPLLIDPKEARRKRVQNQEE"
     gene            17579..18157
                     /gene="pth"
                     /locus_tag="ACFOCA_000275"
     CDS             17579..18157
                     /gene="pth"
                     /locus_tag="ACFOCA_000275"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFC6987052.1"
                     /translation="MSNTIKMVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE
                     KKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPC
                     GRIKFKLGGGNGGHNGLKDIQAKLGTADYYRLRLGIGHPGDRNLVVGYVLNKPSTEHR
                     RQIDDAVAKSLQAIPDILAGKWEEATRFLHSK"
     gene            18218..18424
                     /locus_tag="ACFOCA_000276"
     CDS             18218..18424
                     /locus_tag="ACFOCA_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HFC6987053.1"
                     /translation="MTELKQLIQTESIPVIEETLDFLLYECSIDDAPSAEEVAQWRDI
                     LAARGGKFLRLSKICQTWLDEEAA"
     gene            18421..18783
                     /locus_tag="ACFOCA_000277"
     CDS             18421..18783
                     /locus_tag="ACFOCA_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HFC6987054.1"
                     /translation="MKLPRNRFSLLSALWFAGGIYSLLFKAADTAPPPFPHFDKAAHL
                     ALFFAQIWLLTKAFKTGKLPIPYRSLMVFALCFALFSECAQAWFTATRTGSLGDVLAD
                     LTGALLALFAARSADRPD"
     gene            19014..20429
                     /locus_tag="ACFOCA_000278"
     CDS             19014..20429
                     /locus_tag="ACFOCA_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6987055.1"
                     /translation="MNLHAKDKTQHPENVELLSAQKPITDFKGLLTTIISAVVCFGIY
                     HILPYSPDANKGIALLIFVAALWFTEAVHITVTALMVPILAVVLGFPDMDIKKAMADF
                     SNPIIYIFFGGFALATALHMQRLDRKIAVALLRLSRGSMKAAVLMLFLVTAFLSMWIS
                     NTATAAMMLPLAMGMLSHLDREKERKTYVFVLLGIAYCASIGGLGTLVGSPPNLIAAK
                     ALNLDFVGWMKLGLPMMLLILPLMLLSLYVILKPNLNERVEIKAESIPWTLHRVIALL
                     IFLATAAAWIFSSKIKTAFGISNPDTVIALSAAVAVVVFGVAQWKEVARNTDWGVLML
                     FGGGISLSTLLKTSGASEALGQQVAATFSSAPAFLVILIVAAFIIFLTEFTSNTASAA
                     LLVPIFSGIAMQMGLPEQVLVFVIGIGASCAFMLPVATPPNAIVFGTGLIKQREMMNV
                     GILLNILCVVLVALWAYAVLM"
     gene            20548..21057
                     /locus_tag="ACFOCA_000279"
     CDS             20548..21057
                     /locus_tag="ACFOCA_000279"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6987056.1"
                     /translation="MIILHTNKGDIKIELDFDKAPVTAKNFEQYVKDGFYDGVIFHRV
                     IKGFMIQGGGMDENMNEKETRDPIQNEASNGLPNDKYTIAMARTSDPHSASAQFFINT
                     ADNAFLNFRSKELYGKTVVQDWGYAVFGKVVDGFDVVDAIEGVSTKRHGYHDDVPSEP
                     VVIIKAEAV"
     gene            21220..22602
                     /locus_tag="ACFOCA_000280"
     CDS             21220..22602
                     /locus_tag="ACFOCA_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HFC6987057.1"
                     /translation="MANIAHDIFKAYDIRGIVGKTLTDEAAYLIGKAIATKASEKGIT
                     RIALGRDGRLSGPGLMAQIQHGFTDSSIDVLNVGMIATPMLYFAAINECGGSGVMITG
                     SHNPPDYNGFKMMLGGDTLAGEAIQELLAIVEKDGFVAADKQGSVTEKDISGEYHNNI
                     VGHIKLKRPMKIVIDAGNGVGGAFAGKLYKGLGNEVAELFCEVDGNFPNHHPDPSKPK
                     NLQDLIAALKNSDAEIGLAFDGDADRLGVVTKDGNIIYPDRQLMLFAQDVLSRNPKAK
                     VIFDVKSTRLLTPWIKEHGGEPVMEKTGHSFIKSAMKKTGALVAGEMSGHIFFKERWF
                     GFDDGLYAGARLLEILSASDNPSEVLNNLPQSISTPELNIALPEGSNGHQVIDELAAK
                     AEFEGATEIITIDGLRVEFPDGFGLMRASNTTPILVLRFEADTQEAIERIQNQFKAVI
                     ESNPNLIWPL"
     gene            complement(22622..23377)
                     /locus_tag="ACFOCA_000281"
     CDS             complement(22622..23377)
                     /locus_tag="ACFOCA_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6987058.1"
                     /translation="MIKIRNIHKTFGESTILRGINLDVGKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEDGQIEFDNERPLKIDFSKKPSKHDILALRRKSGMVFQQYNLFPHKTAL
                     ENVMEGPVAVQGKPAAQAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNAMKELAREGWTMVVVTHEIKFALEVATTVVVMDG
                     GVIVEQGSPKELFDHPKHERTRRFLSQIQSTKI"
     gene            complement(23387..24103)
                     /locus_tag="ACFOCA_000282"
     CDS             complement(23387..24103)
                     /locus_tag="ACFOCA_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6987059.1"
                     /translation="MFNNFLASLPFMTETRADMIVSAFLPMVKAGFAVSLPLAAASFV
                     IGMMIAVAVALVRIMPAGGIVRKILLKLVEFYISVIRGTPLLVQLVIVFYGLPSVGIY
                     IDPIPAAIIGFSLNVGAYASETIRAAILSVPKGQWEAGFSIGMTYMQTFRRIVAPQAF
                     RVAVPPLSNEFIGLFKNTSLAAVVTVTELFRVAQETANRTYDFLPVYIEAALVYWCFC
                     KVLFLIQARLEKRFDRYVAK"
     gene            complement(24093..24920)
                     /locus_tag="ACFOCA_000283"
     CDS             complement(24093..24920)
                     /locus_tag="ACFOCA_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6987060.1"
                     /translation="MMLKKFVLGGIAALVLAACGGSESGSGASSAPAQSAVSGSLIER
                     INNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMA
                     GLKAGRFDVVANQVGLTSPERQATFDKSDPYSWSGAVLVARNDSNIKSIDDIKGVKTA
                     QSLTSNYGEKAKAAGADLVAVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGV
                     KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ"
     gene            25205..26113
                     /locus_tag="ACFOCA_000284"
     CDS             25205..26113
                     /locus_tag="ACFOCA_000284"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HFC6987061.1"
                     /translation="MNTPQSAIIPDHAQAGIFIEADFAANRLNDIKAACRASLDALTA
                     LKARFPDDILGLTIAFGSKAWATFGHTDEGSEIKPFSEMGNGLAPSTQHDMSIHIQSF
                     RQNAAYALAQSVLGAFGDSICVASEEHGLRLYQDRGLDGFVDGTENPQGDENVREVAI
                     IPEGKPDAGGSYVLLQKYLHDLKKWDAVPVAEQEASVGRGKETDDEFGRDVRLPDSHL
                     GRVNLKENGVGLKIVRRSLPFGKISGEHGLMFTAYCRTLHNIEAQLLSMFGDTDGKTD
                     LLLRHLSAAVSGGYYYAPSVERLQNL"
BASE COUNT         6244 a         7656 c         6569 g         5686 t
ORIGIN      
        1 ataaaacggc agcaaaaatg ccgtctgaac tcggaggggc ttcagacggc atttttactg
       61 caaaacctta tgcgaacgga tgatgcagca caatcgtttc ttctcggtcg gggccggtgg
      121 agacgatggc gaccggcgca ccgcagactt cttcaatccg tttcaaatat gctttggcat
      181 tggcaggtaa tgcgtcgtag cttttcacgc cgaaagtgga ttcacgccag ccgggcatgg
      241 tttcgtaaat cggcttgcag gtttccaccg catcggaacc gcaaggcagg atatcggttt
      301 tgccgccgtc gggcaattcg tagccgacgc agatattgat ggtttcaacg ccgtccatta
      361 catcgagttt ggtaatgcac ataccggaaa tgccgttgat ttggatggag cgtttcaggg
      421 cggcggcatc aaaccagccg cagcggcgtg cgcggccggt taccgagccg aattcgtgtc
      481 cgcgttccgc caaacctgcg cctacttcgt cgaacaattc ggtcgggaac gggcctgaac
      541 cgacgcgcgt ggtataggct ttgacgatgc ccaaaacata atccagcatt tgagggccta
      601 cgcccgcgcc tgcggaagcg gctcccgcca gacagttgga cgaggtaacg aagggataag
      661 tgccgtagtc gatgtccaac aacgcacctt gcgcgccttc aaacagcagt ttttcgccgt
      721 ttttgttttt ctcgttcaac acgcgggaca cgtcggtaat catcggcgca atgcgcagcg
      781 cgactttttc gataaccgcc atcacgtctt ccgctttaac cggctcggca ttgtgcagat
      841 gttgcagttg gacattgtaa taggcaagga tggcatccag tttttcacgc agtttttcag
      901 gatgcagcaa atcggcggcg cgaatggcgc ggcgtgccac tttgtcttcg taggcagggc
      961 cgatgccgcg gccggtcgtg ccgattttgc ctttgccgcg cgatgcttcg cgggcttggt
     1021 cgagcgcgat gtggtaaggc aggatcagcg ggcaggtcgg cgcgattttc agacggcctt
     1081 cgacgttttt cacgcctgca gcgtttaact cgtcgatttc gcccaacagg gcttcggggg
     1141 agacgacaac gcccgaaccg atgaagcagt ccagactttc atgcaggatg ccgctcggaa
     1201 tcaggcgcaa aatggttttt ttgccgccga cgaccaaagt atgacccgca ttgtggccgc
     1261 cttggaagcg caccacgccg ccggcttctt ccgccagcca gtcaacgatt ttacctttac
     1321 cctcgtcgcc ccactgtgcg ccgattacta caacattttt agccatagcc atataaccta
     1381 tcgatattaa aaattattgc ggaaatcccc aaaccggtgc ggctttgcgc cccaccacga
     1441 tttgcctttc atccgccatg aacgggtatt tagcgtttca cgacctgcca aacgccgtcc
     1501 gtctttttca gacggcctgc aagctcttcc gaaacattgt gtccgatacc gtagtcaatc
     1561 acgacacact gcccttgttc acgcaaggct tcgactgctt cgcgcgccgc ttcggcatct
     1621 tccgcatcga ccaacacggc gggctgccgt tcgctggtgg gcaaacgccc gataaagctg
     1681 cgcaagtcga aactgaatcc cgttgccggg cgcgccctgc cgaaatatcc gcccaatccg
     1741 tcataacgcc cgccgcgcgc gaccgcgtcg tggaaatcgg cggcataggc ggcatacagc
     1801 aagcccgtgt ggtaattgtc gacacgcagc tcggacaagt cgatatggat ttcacaatcg
     1861 gggaatgcgt cgcacaccgc ctgcaattcg tctaacgcgc cgccgaccgc cgacaaatcc
     1921 ggcaaccgtc cgcgcgcgtc ggacaacact tcacgcccgc cgtacaggcg cggcagcagc
     1981 gagaatgctt ttgcccacat gccgtccagc ttccaagcct tgacctgcgc ttcgaccgtc
     2041 ccggtatctt tatcctgcat caaggcaagc agcgttgcag actgccccgc atccaaatgc
     2101 gccgcatcgg acaaggcgcg aaatatgccg atatgcccca gcgaaagcag cactttgccc
     2161 atatcggcaa ttttcatgct tttcagcatc aggtctatca gctcgatgtc gccacggatg
     2221 tcggcaaaac cgtacatttc cgcccctgcc tgcaagggtt cgcgcatatt cagcagaccg
     2281 tcgggctgcg cgtgcaacac cggaccggca taacacaacc gattaatccc ttggttggcg
     2341 gataaaagat gggcatcgat acgcgccacc tgcggcgtga tgtcggcgcg tatgcccaac
     2401 tgcctgccgc tgagcctgtc cgttaccaaa atggttttca gggaaagccc cgcatcgata
     2461 tgcgtcagca gggaatgtgc gtactccatc agcggaggct gtaccagttc ataaccgtgt
     2521 acgcggaaca gtgccaacaa ctgctccctc gcgctttcaa gctgccgcgc gttcgtgggc
     2581 agtacgtcgg cgatatgttc cggaagctgc catgtctgca tgagaatctg ccttctattt
     2641 tatcatgtaa atacaaaagg ctgccagatc cgcaatcaga cggcatcttt gccgcaacgc
     2701 atcacgccgc tgtcaaaacg gcgatgcttc cttccgattc agaatccgaa cagcccctgt
     2761 ccgacggctc aatgccgtca agtcgttaaa accaaacttt accataaaat acacacaatc
     2821 tgaatatact tttataccct gtatccgccg tctgacggca cagcattttt ttacgatata
     2881 atgtgcacca ttatttctca tcacttcctg ctgccgtttt ctgcttcaga cggcattttt
     2941 gttgattgaa cacttatgct gctcgacctc aaccgctttt ccttttccgt cttcctgaaa
     3001 gaagtccgcc tgctgaccgc ccttgccctg cccatgctgt tggcgcaggt cgcgcaggtg
     3061 ggcatcggtt ttatcgatac tgtgatggcg ggtggtgcag gcaaggaaga cttggcggcg
     3121 gtggctttgg gcagcagcgc gtttgccacg gtttatatta cctttatggg cattatggcg
     3181 gcgctgaacc cgatgattgc ccagctttac ggcgcgggta aaaccgacga agtgggcgaa
     3241 acggggcggc aggggatttg gttcgggctg tttttgggcg tgttcggcac ggtattgatg
     3301 tgggcggcga ttacgccgtt ccgcaactgg ctgaccttga gcgattatgt ggaaggcaca
     3361 atggcgcagt atatgctgtt caccagcttg gcgatgccgg cggcaatggt acaccgcgca
     3421 ctgcacgcct acgcctccag cctgaaccgc ccgcgcctga ttatgttggt cagctttgcg
     3481 gcgtttgtgt tgaacgtgcc gctgaactat attttcgttt acggcaaatt cggtatgccc
     3541 gctttgggcg gcgcaggctg cggactggcg acgatggcag tgttgtggtt cagcgcgctg
     3601 gcattgtgga tttatatcgc caaggaaaat ttcttccgcc cattcggact gacggcgaaa
     3661 ttcggcaaac cggattgggc ggtgttcaaa cagatttgga aaatcggcgc acccatcggg
     3721 ctgtcttatt ttttggaagc cagcgcgttt tcgtttatcg tgtttttgat tgcgcctttc
     3781 ggcgaggatt atgtggcggc gcagcaggtc ggcatcagtt tgtcggggat tctctatatg
     3841 attccgcaaa gcgtcggctc ggcggggacg gtgcgcatcg gcttttcgct tgggcggcgc
     3901 gaattttcgc gggcgcgtta tatttcgggc gtgtcactgg tgttaggatg gatgctcgcc
     3961 gtgattaccg tgctttcctt ggtattattc cgttcgccgc tggtaagtat gtacaacaat
     4021 gatccggcgg ttttaagcat cgccgccacc gtcttactgt tcgccggctt gttccaaccg
     4081 gcagacttca cccaatgtat cgcctcctac gccttgcgcg gctacaaagt tacaaaggtg
     4141 ccgatgttca tccacgccgc cgccttttgg ggctgcggtc tgctgccggg ctacctgctc
     4201 gcctaccgtt tcgatatggg catttacggc ttctggacgg cattgattgc ctcgctcacc
     4261 atcgccgcca tcgccttggt gtggtgcttg gaattgtgca gtagggagat ggtcagatcg
     4321 cataaggctg tctgaaaact ccgccgatta aaaatatagt ggattaacaa aaaccagtac
     4381 ggcgttacct cgccttgccg tactatttgt actgtctgcg gcttcgttgc cttgtcctga
     4441 tttttgttaa tccactatag aaacgatggg ctgaagcccg ccactggcaa tactcatttt
     4501 aaagttcaaa cccatgcaac ccatccgata ccgaaccgac cttaccccct acaacacttt
     4561 cggcctgcgc gcccaagccc gagcctttat tgcgcttgaa cacgccgacg ggttgcgcga
     4621 catcgtccgg ctacccgagt tcaaccgaga tactgtttta tggctgggcg gcggcagcaa
     4681 tatccttttg atggaggact acgccggtct ggtcgtacat atggaaaaca aaggcatacg
     4741 cgaaattgct cgttcagacg gcatggttct gattgaagcg caggcgggcg aaatctggca
     4801 cgattttgtc ctgcacgccg tcgcgctggg tttgaacggt ttggaaaacc tgagcctgat
     4861 tccgggtacg gtcggcgcgt cgcccgtgca gaacatcggc gcatacggcg tagaggcgaa
     4921 agatgtgatt cacagcgtgc gctgcttcga tttggatacg gaaacctttg taaccctttc
     4981 caatgccgac tgccgcttcg cctaccgcga aagcctgttc aagcaggaag gtaaagggcg
     5041 ttatgtgatt gtttcggtcg tatttgcatt aaaaacgcat tttgtgccga acttgggtta
     5101 cggcgatttg gcggccgccg ttgccgaact gagcgcgggc agggtgccga cggcgaaaga
     5161 tgtttccgat gcagtgtgtg caatccgcaa cagtaaactt cctaatccta acgtgcttgg
     5221 caatgtcggc agtttcttta aaaaccccgt cgtcagcgca gaaaaagccg ccaccttgtt
     5281 gcagcggcat cctgatatgc cgcgctatcc gcagcccgac ggttcggtca aactcgccgc
     5341 cggctggctg atcgaccaat gtcgtctgaa aggctttcaa atcggcggcg cggcggtaca
     5401 tgacaggcag gctttggtct tagtgaacaa aaacaatgcc tcggcaaacg atgtccggca
     5461 gttggcgcaa cacatcaaat ttacagtatt tgctcggttt caggtagaat tgcacgccga
     5521 acccaattgg ctgcctgctt cgttcagcct gtaaatccaa ggagtatgcc cgtgacccgc
     5581 cccgccaaaa tcaatactta cacacgcatc atcgacgcca gccttgcgct tttcaacgag
     5641 gaaggcgagc gcaacatcag caccaaccat attgccgccc acttgggcat cagtccgggc
     5701 aacctctatt accacttccg caacaaagac gaaatcatcg tccaactgtt caaacgttac
     5761 agcgaagccc tgctggaata cctcaacgaa gccgtgttgc cgtctgatgt ggaagactcc
     5821 atcaattata tggcgggcat ttacgacgtg atgtgggaat accgcttcct attcagcgac
     5881 gtgaacaccc tgcttgcacg cagtgccgaa ctattgggcg aacacaatac cttcacccaa
     5941 gccaaagtct ccccgctctt ggtcaacctg ctgacccagc tcaacggtct gaacatcatc
     6001 caagccgacc aaaccgccat gaacgacctc gccgtcaata tgtggatgat cacgaaatac
     6061 tggttcgact tcgacagctc cctgcgcggc cgcaccaagc tgaccgaaga ctccaaagca
     6121 cgcggcatcc gccgcacctt aagcctcctt cgtccttatc ttttgcccga acaccgcgag
     6181 aaatacgacc ggaaaatcgg caacggcaac ccgtaaaccc acagcgtccg aatcagcctt
     6241 cagacggcac ttacccgacg gtatcagcga atgcgcgcag tccccccgcc ccatatctcc
     6301 atcacaggcc taggttacct cggcctgccg ctggcacaaa agttttacca acacggcagc
     6361 cgcgtcgccg ccataaaacg cagcctgact tcggacgaca tcaacctgcc catacatctc
     6421 gacaccttcg acctcggcag caccgatgcc tttcagacgg cattgtggcg gcaccacgcc
     6481 gacaaacccg tctggttctt cctgctaccg ccctcctcgc tgacgcatta cgccgacacc
     6541 gtcaaacaat gggcagaact tgcccgggcg tgcaacgtgc aacacctgat tttcacaagc
     6601 agcaccagcg tttacggcga tacagcgcgc gaatgcgacg aaaccgccac acccgatccg
     6661 caaaccgagt ccgcccgcca aatcctcgcc gccgaacaac acctgctcga cagcggcatc
     6721 tccaacatcg acatcctgcg gctgggcggg ctttattgcg ccgaacgcca tcccgtcagc
     6781 cgccttgttc aaaagcaaaa catcccgggc ggcaaccgcc ccatcaacat cgtccaccgt
     6841 aatatcgccg tcgaaagcct gtttcagacg gcatttaacc ccggcggcag gcggctgaaa
     6901 aacattatcg aaccgcgcca cccgacacga cgcgaattct acacggaaga agccgccaaa
     6961 ctcggtttgc cggctcctga tttcgcaccc gacgacagca tgggcaaaat catccgtacc
     7021 gtttgcgata acagcttaag cctgtaaaat aagtgtcaac agcaacaaac aggcattctc
     7081 cgccccgatc agaaaatatg tccgccctcc tccccatcat caaccgcctg attctgcaaa
     7141 gcccggacag ccgctcggaa cttgccgcct ttgcaggcaa aacactgacc ctgaacattg
     7201 ccgggctgaa actggcggga cgcatcacgg aagacggttt gctctcggcg ggaaacggct
     7261 ttgcagacac cgaaattacc ttccgcaaca gcgcggtaca gaaaatcctc caaggcggcg
     7321 aacccggggc gggcgacatc gggctcgaag gcgacctcat cctcggcatc gcggtactgt
     7381 ccctgctcgg cagcctgcgt tcccgcgcat cggacgaatt ggcacggatt ttcggcacgc
     7441 aggcagacat cggcagccgt gccgccgaca tcggacacgg catcaaacaa atcggcagga
     7501 acatcgccga acaaatcggc ggattttccc gcgaatccga gtccgcaaac atcggcaacg
     7561 aagcccttgc cgactgcctc gacgaaataa gcagactgcg cgacggcgtg gaacgcctca
     7621 acgaacgcct cgaccggctc gaacgcgaca tttggataga ctaaccttca gacggcatcc
     7681 gacatgaaca gcccttttca caacatcggc atcgtaaccc gccccaacac gcccgacatc
     7741 caagacaccg cacacacgct gattaccttt ttgaagcagc acggctttac cgtctatctc
     7801 gacgaagtcg gcataaagga aggctgcatc tatacccaag acaccgtcgg ctgccatatc
     7861 gtcaacaaga ccgaactggg gcaatactgc gacctggtcg ccgttttagg cggagacggc
     7921 acctttctct ccgtcgcccg cgaaatcgcc ctgcgcgccg ttccgattat cggcatcaac
     7981 caagggcatt tgggcttcct gacccaaatt ccccgcgaat atatgacgga caagctattg
     8041 cccgttttag aagggaaata ccttgccgaa gagcgcatcc tgattgaggc cgcactcatc
     8101 cgcgaaggca aaaccgccga acgcgccatc gccctcaacg atgccgtcct ctcccgtggc
     8161 ggtgccggac agatgattga gtttgaagtc ttcgtcaatc gggaattcgt ctatacccag
     8221 cgttcggacg ggctgattgt ctccaccccc accggatcga ccgcctattc gcttgccgcc
     8281 ggcggcccca tcatgcaggc aggattacac gccttcacgc tcgtccccat ctgcccgcaa
     8341 tccatgacca accgccccat cgccattcca gacacgtccg aaatcgaaat cctcgttacc
     8401 caaggcggcg acgcgcgcgt ccatttcgac ggtcaaaccc atatcgacgt gcaaaacctc
     8461 gaccgcatca ccatccgccg ctaccgaaat cccttacgca ttttgcaccc gaccgactac
     8521 caatatttca aaaccctgcg ccaaaaactg cactggggcg agcaattagt ctaagccggc
     8581 ctttacccga aagtatccat gaatcccaaa atttcctccg accatacaga agatgccgtg
     8641 cgcctctcca aacgcatggc gcaactgggg ctttgttcgc gccgcgaagc cgacggctac
     8701 atcgaacagg gctgggtaac ggtcaacggc aaaaccgccg tactcggtca gaaagtttca
     8761 ccggccgacc gtatcgaact gaacaagaaa gcccacgaac agcaggcggc acgcattacc
     8821 atcctgctga acaaacccgt cggctatgtc agcgcacaag cggaaaaagg ctataaatcc
     8881 gccgccgaac tgattacccc tgaaaaccgc tgggaaggcg acaccggccg catccgtttc
     8941 gatccgaaac acaaaatcgg cctcgccccc gccggcaggc tcgatatcga ttcagtcgga
     9001 ttactggtat tgacgcagga cggccgtatc gccaagcagc ttatcggcga aaacagcggc
     9061 agtgaaaaag aatatttggt gcgcgtgcgc ggcaaattgg acgaaaaagg acttgcctta
     9121 ctgaatcacg gattgagttt ggacggcgag aaactgcgtc ccgcccaagt agaatggcaa
     9181 aacgaagacc aactgcgctt cgtgttgaaa cagggtaaaa agcggcaaat ccgccgtatg
     9241 tgcgaactgg tcggactgcg cgtcgtcggg ctgaaacgca tccgcatggg caaggtcaaa
     9301 ctcggcaggc tgccgcccgg caaatggcgt tatcttgctc ccggcgaatc gttttaaata
     9361 agcattaaaa aatgccgtct gaaaatcctt gcgttttcag acggcattgc cttatgccca
     9421 aataacggtt tcttccaagg gcctgcgcgc cttcgtggcg atttcctgaa cgcggtaacc
     9481 gaatgtcgcg gcgacggaca cgccccattc tgccgcatcg aacaaaccga actgcccgga
     9541 caatacgcgt tccatatcgg catagttgaa accttccacc gggcaggaat cgatacctgc
     9601 catcgccgca cccgtcatca tgttgcccaa cgcgatatag gtctggcggc aacaccagtc
     9661 aaacaaggcg cgcgaatcgt ccaaaatctt gatgtcgtcg gcttgaaacg cctgatacct
     9721 cgccaaagat tttgccatgg catccggttc ggtaacgccg cgccgtttga ggctttccaa
     9781 cataaacggg ctgtcgaagc gggcattttt ctttgccaaa aacaccacca aatgactggc
     9841 ggtatccaaa gcatccgcca taccccaaga aaacggcttg attgcctgtc ggatttcagg
     9901 gttttgaacc acaacaaact gccaaggctc cgaaccgacc gaactgggcg acaaacgccc
     9961 gagttctaaa ataaactgaa aatcctcggc actgatttta cgtgccgcat cgtaatgccg
    10021 gcatgatttg cggtttttaa atgcggatag aacctgctct ctgtctaata ccgtcatagt
    10081 gcatccttta ttacttttat tgcaaattga tttcaaaccg atacggcggc agattcgcca
    10141 ataacgccca aacgcctttc agacggcatt tggttcatcg caaacacgcc tacgggtagg
    10201 cgatataggc ataagccgaa tggttgtgga tagattcgaa attctcactc tcgacgacga
    10261 aactcttgat gcgtttgtcg gcaatcagcg aagtagcgac atcgcgcacc atatcttcca
    10321 cgaatttcgg gttttcgtag gccttttcgg taacgtattt ttcatcgggg cgtttgagca
    10381 ggccgtagag ttggcagctc gcctgcgcct ccacataatc gatgacttcc tcgataccga
    10441 cttcggcatc ggcagtcagg ctgacggtaa cgtgcgaacg ctggttgtgc gcgccgtatt
    10501 gggaaatttc tttggaacac gggcaaagcg aggttacggg aatcatgacc ttcatactgt
    10561 ggccgtatgc accgtctttc atttcgcccg tgaggctgac atcataatcc agtaaagact
    10621 gaataccgga aaccggggcg gttttcttgc ggaaaaatgg gaaagaaacg ctgattttgc
    10681 cggcgcggga atccaaaagc gcgaccattt cagcagtcag cctgcgcaat tgtgcaaaat
    10741 ccaaggcttc ggcatgttgc tccatcaatg cgacaaagcg cgacatatgc gtacccttct
    10801 gctcggcggg caggtaaacc gtcatggtca gacgggcaac tgtggactgg atgccttctg
    10861 cagtttgcag ggtaatcgga aagcgcaggt ctttgatacc gacctgattg atcggcagat
    10921 tgcgcaaatc tcggctggat tgcacgtctg caatagtgtt catgagttgt ttttccttaa
    10981 tattcatgta attgttgaga tgtgtgcatg gtatggcgtt tccgccgggg aatataccgt
    11041 caatctgcaa atgcgagatt atatcacttg cttttggcgg ctgcattgat tgtttctatt
    11101 ttcgggatag tgataaaatc ccgacttatt catatcttac aaggcagaaa cagatgaaat
    11161 tcgccaccca agccatccat tccggctacg attgcgacga acacaaccgc gcgctgatgc
    11221 cgccgattta tcaaaacagt atgtttgcgc tgcacgaaat cggcgaaaat gtgccttacc
    11281 gctattcacg tctgagcaac ccgacccgtc aggtattgga agataccgtt gccgatttgg
    11341 aacacggtgc ggcaggtttt gcgttttcca gcggtatggc agggattgat gccgtatggc
    11401 gcaccttcct gcaaccgggc gataccattg tcgccgtcgc cgatatttac ggcggcgcgt
    11461 atgatttatt ggtcgatgtt tatcaaaaat ggggggtgaa cgttgttttt gccgatttgg
    11521 gcaatctgga taatttggac aagctgctta aagcacacaa ggtcaaactg gtttggctgg
    11581 aaacgccgtc caatccgctt ttgcgcttgg tagacatcaa agcgcttgcc gcgaaagcca
    11641 aagcggccgg cgcactggtc ggcatcgaca acacctttgc cacgccgtat ctgcaacagc
    11701 ccttggatat gggttgcgat tttgtgttcc attccgctac caaatatttg tgcggccatt
    11761 ccgacgtgtt gatgggcatc gtcgttgcca aaaccaaaga gctggcgcag cctttgcacg
    11821 atatgatggt gcataccggc gcggttgccg gcccgatgga ctgctggctg gtgttgcgcg
    11881 gcatcaaaac actggctctg cgcatgaacg cccattgcca aaacgcactc gaaatcgcgc
    11941 gccgtttgga agcccatcct gccattgaaa aagtgttcca tcccggcctg ccgtctcacg
    12001 aacattatga actcgcccaa gcgcaaatgc ctaaaggcat cggcggcgtg gtgacggttt
    12061 atctcaaaaa cgacacgcgc gaagcggcaa acagcgtgat taaaaacatg aaactggtca
    12121 aaatggcttc cagcctcggc ggcgtggaaa gtttggtcaa ccattgctat tcccagtccc
    12181 acagcggcgt gccgcataat gtgaaaatgg aaatgggcat caaagtcggc ctgctgcgtt
    12241 tctccatcgg catcgaagac gcggacgata tttggaacga tatttccgcc gcactcgata
    12301 caactttgta aaccgtaaaa atgccgtctg aaaccatagt ttcagacagc atttcaatat
    12361 tgcgaatcaa atatcaacgc ttcagcatct tggccgcctc aatggcataa taggtcaaaa
    12421 tcccatccgc gcccgcacgt ttgaatgcca gcaggctttc caaaaccact ttatcgccgt
    12481 ccagccatcc gttggcaacc gccgcctgca gcatcgcata ttcgcccgaa acctgatagg
    12541 cataagtcgg cacaccgaac tcgtccttca cgcggcggac aacgtccaaa tacggcaaac
    12601 cgggcttcac catcaccata tccgcacctt cctgaatatc gagcgctact tcatgcagcg
    12661 cctcatcggt gtttgcggga tccatctgat aggtcttttt atctgccttg cccaaattgc
    12721 ccgaactgcc taccgcatca cggaaagggc catagaatgc agaagcatat ttggcggaat
    12781 atgccataat ccgcgtgtgg atatgtccgg catcctccaa cgcctcgcga atcgcaccga
    12841 tacgcccgtc catcatatcc gacggagcaa ccacctgcgc gcccgcttca gcgtggcaca
    12901 aagcctgctt gaccaaaacc tctacggttt catcgttcat cacataaccg ttttcgtccg
    12961 tcagcccgtc ctgaccgtga accgtataag gatcgagcgc gacatccgtc ataatgccca
    13021 gttcgggaaa cctctcgcgc aaggcgcgga cagttgacgg cacgagtcct tcgggattgt
    13081 acgcctcctg cgcacgctcg gttttgtttg ccgtaaccac ggggaacagt gccaacatcg
    13141 gaataccgag ctttaccgcc tcttccgccg taaacagcag cctgtccaaa ctttgacgct
    13201 tcacacccgg catagaaggc acatcctcct cgcgcgccga cccctccaat acgaacaccg
    13261 gataaatcaa atcatcggcg gtcagcgtgt gttcgcgcat caggcggcgt gaaaaatcgt
    13321 ccctgcgcat acggcgcata cgcgaagccg gaacattgcg gtaaggaaac tgcataagcc
    13381 ctccaatcat cctgtcaaca attcaaacca tacggaagcc gccgcaactt gcagacagca
    13441 tcgggcggca atcaaaatcc gttttcaccg gaaagggttt cggcccgccg aaatgccgcg
    13501 ccgaaggacg gcgtcccgcc cattaaagaa caatagcaaa acaacagctt caggctgtca
    13561 gccttcgata ttcttacgcc acaataccaa aagtttcccg atatgctgaa caggttgcgc
    13621 gtcaaccgcc tcacataagg cagtgcagat ttcgatacgt tcggcacggt cgtcgccgaa
    13681 tacgcgcact ttaatcagct catgcgccgt caatgccgca tcggtttcct tgatgaccgc
    13741 gtccgtcaga ccctgctgac cgaccatcac aacaggatgg agatggtgcg cgcgcgcttt
    13801 cagttccaaa atttctttgg tgttcaattt ggtatccgtc attttcctac tgcttgaata
    13861 aaaagaataa tgcggcattg tacgcgattt ggcacgacat cggcaaaatt aacgtacaat
    13921 acgcggtttc cattccgacc cgcgaaccac tatggctgta cgttccaaat cctcaaaagc
    13981 gtggctgcac gaacacgtca acgaccacta cgtccatatg gcgcaaaaag acggctaccg
    14041 cgcccgtgcc gcatacaaac ttttggaaat caacgaaaaa gacaaattaa tcaaacccgg
    14101 cacggtactt gccgacttgg gcagcgcacc gggaagctgg tcgcaggttg ccgccaagct
    14161 gacgggtact tccggagcag ttttcgcctt ggacatcctg cctatggaag ccataggggg
    14221 cgtctccttc attcagggcg acttcaggga aaacgacgtt ttggcgcaat ttgaaggctt
    14281 attaaacaac cgccccttag accttgtaat ctgcgatatg gcgcccaata tgtcgggaaa
    14341 cgccgtaagc gatcaggcgc gcagctttta tttgtgcgaa ctggctttgg acttcgcctc
    14401 gcaacacctg aaaaccggcg gcagcttttt ggtcaaagtc tttcagggtg caggctatca
    14461 ggaatacatg gcagccatgc gcgaaatttt cggcacggtg cagacgcgca aacccgaagc
    14521 ctcgcgcaat cgctccagtg agatttattt attgggcaaa aataaacgct gacaatacag
    14581 acggcgtgct ttacaatcat ttccgtttta cacctcaatt atggagcctt gctaagtggg
    14641 gaacaccttt aaatcaatcc ttgtctgggt cgccttgggt atcggcctga tggctgcgtt
    14701 caacgcttta gacggtaaaa aagaagacaa cgggcaaatc gaatattctc agttcatcca
    14761 acaggtcaac aacggcgaag tatccggcgt caacatcgaa ggatccgtcg tcagcggcta
    14821 cctgattaag ggcgagcgca ccgacaaaag caccttcttc accaacgcgc ctttggacga
    14881 caacctgatt aaaacactgc tcgacaaaaa cgtccgtgta aaagtaacgc cggaagaaaa
    14941 accgagcgcg ctggctgccc tgttttacag cctgctgccc gtcctgctgc tgattggcgc
    15001 gtggttctac tttatgcgta tgcagacggg cggcggcgga aaaggcggcg cattctcatt
    15061 cggcaaaagc cgcgcccgcc tactggacaa agatgccaac aaagtgacct ttgccgatgt
    15121 cgccggctgc gacgaagcca aagaagaagt gcaggaaatc gtcgattacc tcaaagcgcc
    15181 gaaccgctat caaagcctgg gcgggcgcgt gccgcgcggc atcctgctgg cgggcagccc
    15241 gggtacgggt aagacgcttt tggcgaaagc gattgcaggc gaagccggcg tgccgttctt
    15301 cagcatttca ggttccgact ttgtcgaaat gttcgtcggt gtcggtgcaa gccgcgtccg
    15361 cgatatgttc gagcaggcga agaaaaacgc cccctgcatc atctttatcg acgagattga
    15421 cgcagtcggc cgccaacgcg gcgcaggttt gggcggcggc aatgatgagc gcgagcaaac
    15481 attaaaccaa ttgttggttg aaatggacgg ttttgagagc aatcagactg taattgtgat
    15541 tgcggcaacc aaccgccccg acgtactcga tcctgcgctg caacgccccg gccgtttcga
    15601 ccgccaagtc gtcgtccccc tgccggacat ccgggggcgc gaacagattt tgaacgtcca
    15661 ttctaaaaaa gtgcctttgg acgaatctgt ggatttattg tccctcgcgc gcggcacgcc
    15721 gggtttttcc ggtgcggatt tggcaaacct ggttaacgaa gccgccctgt ttgccggccg
    15781 ccgcaacaaa gtcaaagtcg atcaaagcga ttttgaagac gcaaaagaca aaatctatat
    15841 gggtccggaa cgccgcagta tggtgatgca cgaagacgaa aaacgtgcga cggcgtatca
    15901 tgagtccgga cacgcgattg ttgccgaaag cctgcccttt accgaccccg tccacaaagt
    15961 aaccattatg ccgcgcggac gtgcgctggg tctgacttgg cagcttccgg agcgcgaccg
    16021 catcagtatg tataaagatc agatgttgag ccagctctcc atcctgttcg gcggacggat
    16081 tgccgaagac atcttcgtcg gacgcatctc caccggcgca tcaaacgact ttgaacgcgc
    16141 aacccaaatg gcgcgcgaaa tggtaacgcg ctacggcatg agcgacaaaa tgggcgtgat
    16201 ggtttatgcg gaaaacgaag gcgaagtctt cttaggacgc agcgtaaccc gttcgcaaaa
    16261 catttccgag aaaacccagc aggacatcga tgcggaaatc cgccggattt tggacgagca
    16321 gtatcagatt gcctacaaaa tcctcgatga aaaccgcgac aagatggaaa ccatgtgcaa
    16381 agccctgatg gaatgggaaa ccatcgaccg cgatcaggta ctggaaatca tggcgggcaa
    16441 acaacccagt ccgcccaagg attacagcca caacctgcgc gagaatgcgg acgcggcgga
    16501 agataacgcg ccgcacgctc cgactcggga agaaaccgaa gcacctgccc cggcagacac
    16561 cgcttcgaca gagtccgagc agcagcctga aaacaaggct taacttcccg aacaaacggc
    16621 agcccgcaag ctgccgtttt cccatcctgt tttcagacgg cattttccgc tcaatgccgt
    16681 ctgaaacgcc aaagccgtat cggtttttgc ggatctgcga tatggcggtt taaattgaaa
    16741 tcagacgagg caaggctgta ccggtttaaa attaaaccgc tataataccg cccttcgaat
    16801 acacgcccgc attggtgatg cctgtgaaaa aagttgaaaa aaacatcttg gtgctgcacg
    16861 gcgcggacaa aatgttcgag ctggtcgata aggttgaaga ctatccgcac tttctgccgt
    16921 ggtacagcaa gaccgaggtc atcgggcgta gcggcaacga actgaaggcg cggctgttta
    16981 tggactatat gcacgttcgc caatcattcg ccacgcacaa ccgcaacatt ccgggcaggg
    17041 aaatccgtat ggaactgctc gagggtccgt tcaaaacctt acgtggaacg tggaaattta
    17101 tcgatttggg cgacgatatg tgcaaaatcg aattcaattt ggaatacgat ttttccaatg
    17161 ccgttttgtc cgccttaatt tcccccgtct tcaaccacct ttccgtcacg ctggtcgaag
    17221 cgttcgtcaa agaggcagac cgccgttatg cttgaaattg agattgtgta cgggctgccc
    17281 gaccgacagg ttttgaaaac catgcagctt gccgaaggaa caaccgtccg cgccgccgca
    17341 ctgcaaagcg gtttggacgg catatttgaa gatttaaacc tgcattccgc gcctttgggc
    17401 attttcggca aagccgtcaa agacgacacg ccgctgcgcg acggcgaccg catcgaagtg
    17461 taccgcccgc tgttgatcga ccccaaagaa gcgcgccgca aacgcgttca aaatcaagaa
    17521 gaataaccat gccgtctgaa gccttcagac agcattcgac agaaacacgg aaaatatcat
    17581 gtcaaacaca atcaaaatgg ttgtcggctt gggcaacccg ggcaaagaat acgaacagac
    17641 acgccacaat gcgggttttt ggttcctcga cgaactggcg tggaaatgga aggcttcatt
    17701 taaagaagaa aaaaaattct tcggcgaagt cgcccgtgcc gccctgcccg acggcgacgt
    17761 ttggctgctc aaacctgcca cgttcatgaa ccgttccgga caggcagttg ccgcccttgc
    17821 gcagttttat aaaatcaaac ccgaagaaat cctcgtcgtc cacgacgaac tcgacattcc
    17881 ctgcggacgg atcaaattca aactcggcgg cggcaacggc ggacacaacg gcttgaaaga
    17941 cattcaggca aaactcggca cggcagacta ttaccgtctg cgcctcggca tcggccaccc
    18001 gggcgaccgc aacctcgtcg tcggctatgt cctgaacaaa cccagtacgg aacaccgccg
    18061 acagattgac gatgccgtcg ccaaatccct gcaggccata cccgacatcc ttgccggcaa
    18121 atgggaagag gcaacccgct tcctgcacag caaatgaccc gatgccgtct gaagcccttt
    18181 cagacggcat gttcccgatt tccatatccg aacagtcatg accgaactca agcagcttat
    18241 ccaaaccgaa tccatccccg tcatcgaaga aaccctcgat ttcctgctgt acgaatgcag
    18301 catcgacgac gcaccatccg ccgaagaagt ggcacaatgg cgcgacatac ttgccgcacg
    18361 cggcggcaaa ttcctgcgcc tgtccaaaat ctgccaaacg tggctggacg aggaggcggc
    18421 atgaagctgc cgcgcaaccg cttcagcctg ctttccgcat tgtggtttgc cggcggcatc
    18481 tattcgctgc tcttcaaagc tgccgacacc gcgccgccgc cgtttccgca tttcgacaaa
    18541 gcagcacacc ttgccctgtt tttcgcacaa atctggcttt tgaccaaagc attcaaaacc
    18601 ggaaaacttc ccatccccta ccgcagcctg atggtctttg ccctctgttt cgccctcttc
    18661 agcgaatgcg cgcaggcatg gtttaccgca acgagaaccg gcagtttggg cgatgtcctt
    18721 gccgacctga cgggtgcatt gctcgcactc tttgccgcac gttccgccga ccgcccggac
    18781 tgaatcggtt tattttcccc aaacaggatg cacctcttcc cgatacatcc tatttttccc
    18841 cttacatatc aatctcatct cataaacaaa accgacaaat cgtttacaat atatttacac
    18901 tacatcagat tacaaatata ctcgaaccag ttgcagaagc ggcgattcca caaaccgttt
    18961 cggattgcac gacacaaaag aaaaaccgat tttgttgcct taaaggagta ttcatgaacc
    19021 tgcatgcaaa ggacaaaacc cagcatcccg aaaacgtcga gctgctcagt gcgcagaagc
    19081 cgattaccga ctttaagggc ctgctgacca ccattatttc cgccgtcgtc tgtttcggca
    19141 tttaccacat cctgccttac agccccgatg ccaataaagg tatcgcgttg ctgattttcg
    19201 ttgccgcact ttggtttacc gaagccgtcc acattaccgt aaccgcactg atggtgccga
    19261 ttctcgccgt cgtactcggt ttccccgaca tggacatcaa aaaggcgatg gctgattttt
    19321 ccaacccgat tatctacatt tttttcggcg gcttcgcgct tgccaccgcc ctgcatatgc
    19381 agcggctgga ccgtaaaatc gccgtcgccc tgctgcggct gtcgcgcggc agtatgaagg
    19441 ccgccgtgct gatgttgttc ctcgttaccg cctttctgtc catgtggatc agcaacaccg
    19501 ccaccgccgc gatgatgctg cctctggcaa tgggtatgct gagccacctc gaccgggaaa
    19561 aagaacgcaa aacctacgtc ttcgtcctgc tcggcatcgc ctattgcgcc agcatcggcg
    19621 gcttgggcac gctcgtcggc tcgccgccca acctgattgc cgccaaagcc ctaaatctgg
    19681 acttcgtcgg ctggatgaag ctcggcctgc cgatgatgct gttgattctg cccttgatgc
    19741 tgctctccct gtacgtcatc ctcaaaccta atttgaacga acgcgtggaa atcaaagccg
    19801 aatccatccc ttggacgctg caccgcgtga tcgcgctgtt gattttcctt gccacagccg
    19861 ccgcgtggat attcagctcc aaaatcaaaa ccgccttcgg catttccaat cccgacaccg
    19921 ttatcgccct gagtgccgcc gtcgccgtcg tcgtcttcgg cgtggcgcaa tggaaggaag
    19981 tcgcccgcaa taccgactgg ggcgtgttga tgctcttcgg cggcggcatc agcctgagca
    20041 cgctgttgaa aacatccggc gcgtccgaag ccttgggaca gcaggttgcc gccacctttt
    20101 ccagcgcgcc cgcatttttg gtgatactca tcgtcgccgc cttcattatt tttctgaccg
    20161 agttcaccag caacaccgcc tccgccgcat tgcttgtacc gattttctcc ggcatcgcta
    20221 tgcagatggg gctgcccgaa caagtcttgg tattcgtcat cggcatcggc gcatcttgtg
    20281 ccttcatgct gccggttgcc acaccgccta acgcgattgt gttcggcacg ggcttaatca
    20341 agcaacgcga aatgatgaat gtcggcatac tgctgaacat cctctgcgta gtattggttg
    20401 ctctgtgggc ttatgctgta ctgatgtaaa ccatcgacct aaacaacaag accgtctgaa
    20461 agaatatttt tcagacggcc ttgaagtttg tcgttcagac acaatttgtc gaatcattca
    20521 aaaccggatt ctaacgaaag gaaacccatg attatcctgc acaccaacaa aggcgacatc
    20581 aaaatcgaac tcgatttcga caaagccccc gttaccgcca aaaacttcga gcaatacgtc
    20641 aaagacggct tctacgacgg cgtaatcttc caccgcgtca tcaaaggctt catgattcaa
    20701 ggcggcggca tggatgaaaa catgaacgaa aaagaaaccc gcgatccgat tcaaaacgaa
    20761 gcgtccaacg gcctgcccaa cgataaatac accatcgcca tggcacgcac ttccgacccc
    20821 cattccgcca gcgcgcaatt cttcatcaac actgccgaca acgctttcct gaacttccgt
    20881 tctaaagagc tgtacggcaa aaccgtcgtc caagactggg gctatgccgt attcggtaaa
    20941 gtcgttgacg gttttgacgt tgtcgatgcc atcgaaggcg tatccaccaa acgccacggc
    21001 taccatgacg acgtaccgag cgaacctgtc gtcatcatta aagccgaagc ggtataaacc
    21061 ggcaatccga aagcagcctg cacaaaggct gctttttttg tttcaggcgg cataaaatcc
    21121 aagcacatat gccgtctgaa cacctcccgc aagccttcgg acaatgttgc aacgtgttaa
    21181 aatagcctcc tttcctgaaa ccgaaacgag ggaaccccta tggcaaatat cgcccacgac
    21241 attttcaaag cctacgacat ccgaggcatc gtcggtaaaa ccctgaccga cgaagctgcc
    21301 tatttaatcg gcaaagccat tgccaccaaa gcctccgaaa aaggcattac ccgcatcgcc
    21361 ctcggccgcg acggccgttt gagcggcccc ggcctgatgg cacaaattca acacggtttt
    21421 acagacagca gcatcgacgt cctcaacgtc ggcatgattg ccactcctat gctctacttc
    21481 gcagccatca acgaatgcgg cggcagcggc gtgatgatta ccggcagcca caatccgccc
    21541 gattacaacg gtttcaaaat gatgctcggc ggcgacacgc tcgcaggcga agccattcaa
    21601 gaacttttag ctattgttga gaaagacggt tttgttgccg ccgacaaaca aggcagcgta
    21661 accgaaaaag acatctccgg cgaataccac aacaacatcg tcggccacat taagctcaaa
    21721 cgtccgatga aaatcgtgat tgacgcgggc aacggtgtcg gcggcgcgtt tgccggcaaa
    21781 ctctacaaag gtttgggcaa tgaagtggcc gaacttttct gcgaagtgga cggcaatttt
    21841 cctaatcacc accctgatcc ttccaaaccc aaaaacctgc aagatttgat tgccgcgctg
    21901 aaaaacagcg atgccgaaat cggcttggct tttgacggcg atgccgaccg cttgggcgtg
    21961 gtcaccaaag acggcaacat tatttatccc gaccgccaat taatgctgtt cgcccaagac
    22021 gtgttgagcc gcaatcctaa agcaaaagtg attttcgatg tcaaatccac ccgcctgctg
    22081 accccgtgga ttaaagaaca cggcggcgaa cctgtgatgg aaaaaaccgg ccacagcttt
    22141 atcaaatccg ccatgaaaaa aaccggcgcg ctggttgccg gcgaaatgag cggacacatc
    22201 ttcttcaaag aacgctggtt cggcttcgac gacggtctgt acgccggcgc acgcctcttg
    22261 gaaatcctgt ctgcctccga taatccgtcc gaagtgttaa acaacctgcc gcaaagcatt
    22321 tccacgcccg aactcaacat cgccctgccc gaaggcagca acggccatca ggttatcgac
    22381 gaactcgccg ccaaagccga atttgaaggc gcaaccgaaa tcatcaccat cgacggtctg
    22441 cgcgttgaat ttcccgacgg cttcggtctg atgcgtgctt ccaataccac gccgattctg
    22501 gtgttgcgtt ttgaggcgga tacgcaagaa gccatcgagc ggattcaaaa ccaattcaaa
    22561 gccgtcatcg aaagcaatcc gaatctaatc tggcctctgt aaacacagga aaaatgctta
    22621 atcaaatctt ggtagattgg atttggctta aaaatctccg cgtccgttcg tgtttggggt
    22681 ggtcgaacaa ctctttcggg ctgccctgct ctacgataac gccgccgtcc atcacgacaa
    22741 cggtcgtggc aacttccagc gcgaacttga tttcgtgggt aacgacgacc atcgtccaac
    22801 cttcccgcgc caattccttc atggcgttca acacgtcttg caccaattca gggtcgagtg
    22861 cggaagtggg ttcgtcaaac aacatcagct cgggctgaat cgccaatgcg cgggcaatgc
    22921 cgacgcgctg ctgctgaccg ccggaaagct ggtagggata caaatccact ttgtcgccca
    22981 agccgacttt ttccagcagt ttcagagcct cttcgcgcgc ttgggcggca ggcttgccct
    23041 gtacggcaac cggtccttcc attacgtttt ccaaggcggt tttgtgcgga aagaggttgt
    23101 attgttgaaa caccatgcct gatttgcggc gtagtgccaa aatatcgtgt ttgcttggtt
    23161 ttttagaaaa atcgattttc agcggtcgct cgttgtcgaa ctcgatttgt ccgtcttcgg
    23221 gcatttccaa cgcgtttagg catcgcagaa acgtcgtttt gcctgagccg gaaggcccga
    23281 ggataacgac cacctgccct ttgcccacat ccaaattgat gccgcgcaaa atagtgcttt
    23341 cgccgaaggt cttatggata ttgcggattt taatcataac aactccttat ttggcgacat
    23401 aacggtcgaa acgtttttcc aaacgtgcct gaatcaggaa cagaaccttg caaaaacacc
    23461 agtaaaccaa agcggcttcg atatagacgg gcaaaaagtc ataagtgcgg tttgccgttt
    23521 cctgcgcgac gcggaataat tccgttaccg tcacgactgc cgcgagcgag gtgtttttaa
    23581 acaaaccgat aaactcgttg ctcaaaggcg gcacggcaac gcgaaatgcc tgcggcgcga
    23641 cgatgcggcg gaacgtctgc atataggtca taccgatgga gaaacctgct tcccattggc
    23701 ctttaggtac ggacaaaatt gccgcgcgta tggtttcgga agcgtatgca ccgacattga
    23761 gcgagaagcc gataatggcg gcgggaatcg gatcgatata gataccgacg gaaggcagcc
    23821 cgtaaaacac aatcacaagc tgaaccaaca gcggcgtacc gcgaatgacg gaaatataaa
    23881 attccaccaa tttcagcagg attttccgca cgatgccgcc ggcgggcata atccgcacca
    23941 aagccacggc taccgcaatc atcataccga taacgaaaga agctgccgcc aaaggcagag
    24001 agaccgcgaa gccggctttg accataggca aaaacgcgct gacaatcata tcggcgcgtg
    24061 tttccgtcat aaacggcagc gaagcaagga aattattgaa cactgatgtc ttttccgaag
    24121 aattgttcgc ccagtttttt cagcgtaccg tcggctttca gctcgttgat tgccgtactg
    24181 aatttcgcca cggcttcgtc attgcccttg ttgacaatca ggccggaacc gactttttca
    24241 tcggcaggtg cggaccaaac gattttcacg cccgcattcg ggtttttctt cagatagtcc
    24301 aaaaccgcca attcgtcgtt cagggttgca tcggcacgtt tttgttcaat cagggtcagc
    24361 gattgcgcca aaccgtccac tgccaccaaa tctgcgcctg cagctttggc tttttcgccg
    24421 tagttgctgg tcagggattg tgcggttttc acgcctttga tgtcgtcgat agatttgatg
    24481 ttgctgtcgt tacgggcaac caatacggca ccgctccagc tgtaaggatc ggatttgtcg
    24541 aatgtcgctt ggcgttcggg gctggtcaga ccgacttggt ttgccaccac gtcgaaacgc
    24601 cccgccttca aacccgccat catcgaatcc cattgcgttt ctttaaactc gactttcacg
    24661 cccagttttt ccgccacggc gcgggttact tccacatcgt aaccggtcag tttgccgtcc
    24721 ttgtcgtggt aggtaaacgg tgcgtaagtg ccttccgtgc cgacggtaac cgtgccttta
    24781 ttgttgatgc gctcgattaa agaaccggaa actgccgatt gtgcaggcgc ggaagatgct
    24841 ccgctgccgc tttccgaacc gccgcaggcc gccaaaacca atgcggcaat gccgccgagt
    24901 acgaattttt tcaacatcat tctctcctgt aaaaagtgtg caagtgcggc attctaagtg
    24961 aaattgcggc aaacacaaag aatacttttt ttatatggtt attccaaatc ggaatggaaa
    25021 agatatgccg aaaccgccgg aagcggaaat aaagggggcg ggaaaggcga cgggcggcac
    25081 gaaaccgaaa agcggcatca ggtatgcaaa cggcggattc acgcacgccg ttccggcaaa
    25141 aatccgcctg ccgattcggt gctataatcc atccgaaaca gatgacacca aaaaggaaca
    25201 tctcatgaac acgccccaat ccgccatcat tcccgaccac gcccaagccg gcatctttat
    25261 cgaagccgac ttcgccgcca accgcctcaa cgatattaaa gccgcctgcc gcgcttcgct
    25321 cgacgcgtta actgccttga aagcccgctt tccggacgat attttgggtc tgaccatcgc
    25381 cttcggcagc aaagcctggg caacattcgg acatacggac gaaggcagtg aaatcaaacc
    25441 cttctccgaa atgggcaacg ggcttgcgcc gtccacgcag cacgatatgt ccatccacat
    25501 ccaatccttc cgccaaaacg ccgcctacgc gcttgcccaa tccgttttag gcgcgttcgg
    25561 cgacagcata tgcgtcgcgt ccgaagaaca cggtttgcgc ctgtatcagg atcgcggact
    25621 ggacggtttc gtcgacggca cggaaaaccc gcagggcgat gaaaatgtcc gcgaagtcgc
    25681 catcatcccc gaaggaaaac ccgatgcggg cggcagctat gtcctgctgc aaaaatacct
    25741 gcacgatttg aaaaaatggg atgccgtccc cgtcgccgaa caggaggcct cggtcggacg
    25801 cggcaaggaa accgacgacg aattcggccg cgatgtccgc ctgcccgatt cgcacctcgg
    25861 ccgcgtcaac ctgaaagaaa acggagtcgg cctgaaaatc gtccgccgca gcctgccctt
    25921 cggcaaaatc agcggcgaac acggtttgat gtttaccgca tactgccgca cgctgcacaa
    25981 tatcgaagcg caattattga gtatgttcgg cgatacggac ggcaaaaccg acctgctgct
    26041 ccgacacctc tccgccgccg tttcgggcgg atactactac gcgccgtctg tcgaacgcct
    26101 gcaaaacctc taagccggac gatgccgtct gaaaccattt ttcagacggc atttt
//
LOCUS       DAXIFS010000008        24083 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.008, whole genome shotgun sequence.
ACCESSION   DAXIFS010000008 DAXIFS010000000
VERSION     DAXIFS010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24083
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.008"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(184..1077)
                     /locus_tag="ACFOCA_000285"
     CDS             complement(184..1077)
                     /locus_tag="ACFOCA_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6987062.1"
                     /translation="MPHPCQTVHTLTARVPKCRLKLNAARRQRYNRPQLFFPNIIMTT
                     TEHDNDDAFLLRYSRHILLDEIGIEGQQKLSAAHILVVGCGGLGAAALPYLAASGIGT
                     LTIADSDTVELHNLQRQVAFDEGDVGKPKAEALADRLKRINHNVDVRTVNEKLDGCRL
                     TGLVQTADIVLDCCDNYATRQAVNRVCVQTKTPLVSGAAVRFEGQLAVYRPDLPDSPC
                     YACLFDGGSASDGICSLFGVFSPLVGIIGCTQAAEALKILLDVGEPSHGRLAVYRALE
                     GGWQYFDLPRNPECPICGTER"
     gene            1120..3822
                     /gene="ppc"
                     /locus_tag="ACFOCA_000286"
     CDS             1120..3822
                     /gene="ppc"
                     /locus_tag="ACFOCA_000286"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HFC6987063.1"
                     /translation="MQLHILNNPKDAALAADAEFLKQSLFNLLHEEASPLVVETVKLL
                     STSDDSAALIEKVLPQLDEQQTHDLTLACGLFAQILNIAEDVHHERRRQIHEEAGRGG
                     AEGSLTETVRRLKAGKADGKSVQRQLDNTSVTAVLTAHPTEVQRQTVLSFNRRIRALL
                     PQRERCTNADALARLRREIDTILLGLWQTSETRRHKLSVNDEINNGVSIFPMSFFEAL
                     PKLYRNMEHDFQMVYPDVCVPNILKIGGWIGGDRDGNPFVSAETLRFAFRRHADAVFR
                     FYRGELDKLYRELPLSIRRVKVNDDVMALAALSPDEELARTEEPYRRAIAYIMARAMG
                     KARALGLGMGCKFGFLEPYASAQEFLDDLKKLQRSLIDNGSRLLAEGRLADLIRSVSV
                     FGFHMMPLDLRQHAGKHADVVAELFQHAGLEDYNSLNEEQKQAVLLRELSHQRPLYSP
                     FITYSDHTRHELAIFNEARKIKDEFGEDAVTQSIISNCEQPSDLLALALLLKESGLLA
                     VENGKPHSRINIVPLFETIEALENACPVMETMFRLDWYDALLESRGNIQEIMLGYSDS
                     NKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAG
                     SVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAKLMQALSD
                     VSFKYYRELITHPDFIDYFLQTSPIQEIATLNLGSRPASRKTLARIQDLRAIPWVFSW
                     MQNRLMLPAWYGFGSAVETLCEGNPDTLTALREHAQSNPFFQAMLSNMEQVMAKTDIT
                     LAENYAGLSESPDKAKIIFGMIKEEYRRSRKALLDLLQTEELLRDNRSLARSLALRIP
                     YLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG"
     gene            3945..4934
                     /locus_tag="ACFOCA_000287"
     CDS             3945..4934
                     /locus_tag="ACFOCA_000287"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase (FAD) complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFC6987064.1"
                     /translation="MKITVIGAGSWGTALALHFSQHGNRVSLWTRNADQVRQMQEARE
                     NKRGLPGFSFPETLEVCADLADALKDSGLVLIVTSVAGLRSSAELLKQYGAGHLPVLA
                     ACKGFEQDTGLLTFQVLKEVLPDNKKIGVLSGPSFAQELAKQLPCAVVLASENQEWIE
                     ELVPQLNTTVMRLYGSTDVIGVAVGGAVKNVMAIATGLSDGLEYGLNARAALVTRGLA
                     EITRLASAMGAQPKTMMGLAGIGDLILTCTGALSRNRRVGLGLAEGKELHQVLVEIGH
                     VSEGVSTIEEVFNTACKYQIDMPITQTLLQLIRKEMTPQQVVERLMERSARFE"
     gene            4989..5318
                     /locus_tag="ACFOCA_000288"
     CDS             4989..5318
                     /locus_tag="ACFOCA_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987065.1"
                     /translation="MKQNIEKLESSVYTLVQKFETLVSENRRLKETVAELKRAHERQK
                     LEHETAVDELSEALLVQVGKLKEDLQNKIDSLTEENTRYRSLLEQSREKISALAARLP
                     QWQETQQ"
     gene            5329..5634
                     /locus_tag="ACFOCA_000289"
     CDS             5329..5634
                     /locus_tag="ACFOCA_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HFC6987066.1"
                     /translation="MNIEQVHIEVMHARLTVNTPAEEKDTLLQAVGMLNGKAEAIREG
                     GRVADSEKIVIMAALNVVHDLLKTSLNGGDLAIGDFARKIADMDNACQKALSRLAQE"
     gene            5640..5819
                     /gene="ssrS"
                     /locus_tag="ACFOCA_000290"
     ncRNA           5640..5819
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="ACFOCA_000290"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            5997..6428
                     /gene="rplM"
                     /locus_tag="ACFOCA_000291"
     CDS             5997..6428
                     /gene="rplM"
                     /locus_tag="ACFOCA_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFC6987067.1"
                     /translation="MKTFSAKPHEVKREWFVIDAQDKVLGRVAAEVASRLRGKHKPEY
                     TPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQEQFPGRALE
                     QAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLELK"
     gene            6438..6830
                     /gene="rpsI"
                     /locus_tag="ACFOCA_000292"
     CDS             6438..6830
                     /gene="rpsI"
                     /locus_tag="ACFOCA_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFC6987068.1"
                     /translation="MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETS
                     RMVVRQPLVLTENAESFDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAG
                     FVTRDAREVERKKPGLRKARRAKQFSKR"
     gene            complement(7086..8015)
                     /locus_tag="ACFOCA_000293"
     CDS             complement(7086..8015)
                     /locus_tag="ACFOCA_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6987069.1"
                     /translation="MDSIIELRHLKTLLALEETGSVSLAAKRVFLTQSALSHQIRMLE
                     NHYGAPLFERKSTPLRFTPVGERLLRLAHDLLPQVTDAERDLARIIEGEAGELRIAVE
                     CHTCFDWLMPAMGEFRPIWPQIELDIVSGFQADPIGLLLQHRADLAIVSEAEKQNGIS
                     FQPLFAYEMVGICAPDHPLAAKTVWEAEDFIGETLITYPVPDEMLDLPKKILIPKNIN
                     PPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIR
                     TEDTDKSYLNNFCQIIRERGFADLPGLSELEPV"
     gene            8146..8895
                     /locus_tag="ACFOCA_000294"
     CDS             8146..8895
                     /locus_tag="ACFOCA_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFC6987070.1"
                     /translation="MVLRRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVT
                     ASRAAIDFAVEQKADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLD
                     AHPTLGNNAQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVI
                     GKPEREIRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHH
                     ATERYGVRALAESAAEVFGLEVCHFDENNPA"
     gene            9018..9599
                     /gene="petA"
                     /locus_tag="ACFOCA_000295"
     CDS             9018..9599
                     /gene="petA"
                     /locus_tag="ACFOCA_000295"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFC6987071.1"
                     /translation="MDNQEINNGRRRFLTLATCGAGGVAALGVATPFVASFFPSEKAK
                     AAGAAVEVDVSKIEAGQLLTAEWQGKPIWVLNRTDQQLKDLKGLNGELTDPNSDAEQQ
                     PEYAKNETRSIKPNILVAIGICTHLGCSPTFRPDIAPADLGADWKGGFFCPCHGSKFD
                     LAGRVYKGVPAPTNLVVPPYKYLSDTTILVGED"
     gene            9618..10967
                     /locus_tag="ACFOCA_000296"
     CDS             9618..10967
                     /locus_tag="ACFOCA_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFC6987072.1"
                     /translation="MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYY
                     FGSLALLVLVIQIVSGIFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMH
                     STGASFFFIVVYLHMFRGLIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMS
                     FWGAQVIINLFSAIPVIGPDLSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAH
                     IIALHEVGSNNPDGVEIKKNKDENGIPRDGIPFHPYYTVKDILGVVVFLIVFCAVLFF
                     APEGGGYFLEAPNFDAANALKTPPHIAPVWYFTPFYAILRAIPSFLGTQVWGVIGMGA
                     AVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATDTRTLVARI
                     LSFVYFAFFLGMPFYTKLDKNKPVPERVTMSTAKQKIMFFVYVGITAVGAYLFATNI"
     gene            10982..11770
                     /locus_tag="ACFOCA_000297"
     CDS             10982..11770
                     /locus_tag="ACFOCA_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HFC6987073.1"
                     /translation="MKQAMKNWFAALLLAVPMGAAFASGGHAHYEKVDIDLRDQVSLQ
                     RGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDA
                     AKWFGAAPPDLTLIARSKGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQ
                     GVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVN
                     YLVYMGEPAQLQRKRIGYVVMIFLFAVMLPLAYFLKKEYWKDVH"
     gene            12109..13893
                     /gene="rmuC"
                     /locus_tag="ACFOCA_000298"
     CDS             12109..13893
                     /gene="rmuC"
                     /locus_tag="ACFOCA_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HFC6987074.1"
                     /translation="MELMTVLLPLAALVSGVLFTWLLMKGRFQGEFADLNAQLAEKAA
                     RCDFVEQAHAEIASELAVLDGKYRHLQDENYALGNRFSAAEKQIAHLQEKEAESVRLK
                     QSYIELQEKAQGLAVENERLATQLGQERKAFADQYALERQIRQRIETDLEESRQTVRD
                     VQNDLADVGNRFAAAEKQIAHLQEKEAEAERLRQSHTELQEKAQGLAVENERLATQIE
                     QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERI
                     HGFGELVKQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWG
                     EMILETVLENSGLQKGREYVVQAASVRKEEDGGTRRLQPDVLVNLPDNKQIVIDSKVS
                     LTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVE
                     PAYLLALQHDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGG
                     KLYDKFVGFVQTLESVGKGIDQAQSSFQTAFKQLAEGRGNLVGRAEKLRLLGVKAGKQ
                     LQRDLVERSNETTALSESLEYAAEDEAV"
     gene            complement(14100..14732)
                     /locus_tag="ACFOCA_000299"
     CDS             complement(14100..14732)
                     /locus_tag="ACFOCA_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6987075.1"
                     /translation="MTLRYEIFPVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQAL
                     ANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGPHPDDEFLLQSLPQTTAQYGFP
                     VSPAFAPNRWLEEGETLTVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETI
                     GRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF"
     gene            14824..15648
                     /locus_tag="ACFOCA_000300"
     CDS             14824..15648
                     /locus_tag="ACFOCA_000300"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFC6987076.1"
                     /translation="MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMS
                     EKLDGVRAYWDGKHLVSRQGYVFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRS
                     ASSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRQHAMDF
                     LKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGA
                     VGCKNRYGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTQKGTPKFATFVRVRTDR"
     gene            15717..16280
                     /locus_tag="ACFOCA_000301"
     CDS             15717..16280
                     /locus_tag="ACFOCA_000301"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HFC6987077.1"
                     /translation="MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGG
                     KYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIR
                     GRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVP
                     NRYVFGYGMDAAGCWRNLGEIYALDGK"
     gene            16361..16798
                     /locus_tag="ACFOCA_000302"
     CDS             16361..16798
                     /locus_tag="ACFOCA_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HFC6987078.1"
                     /translation="MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQD
                     DIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAV
                     QYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV"
     gene            16867..17136
                     /locus_tag="ACFOCA_000303"
     CDS             16867..17136
                     /locus_tag="ACFOCA_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HFC6987079.1"
                     /translation="MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNG
                     KSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE"
     gene            17136..18911
                     /gene="ptsP"
                     /locus_tag="ACFOCA_000304"
     CDS             17136..18911
                     /gene="ptsP"
                     /locus_tag="ACFOCA_000304"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HFC6987080.1"
                     /translation="MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAE
                     RFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKIN
                     AEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDE
                     TVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLIT
                     EGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIEL
                     VGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYNAIVKKMKGKSV
                     TIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVH
                     GPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSI
                     LKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVS
                     VCGEMAGDTAFTRILLGMGLRRFSMNPNNILPVKNIILHSNIAQLENEIAKIVRCEDE
                     EKAEKLIKQMNSVSVEEEADFKGRK"
     gene            complement(19405..19614)
                     /locus_tag="ACFOCA_000305"
     CDS             complement(19405..19614)
                     /locus_tag="ACFOCA_000305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987081.1"
                     /translation="MPSENLSDGIFLPKQPYFLSGLQNLSETTETTLPSFPQKRESRT
                     QHGKNLSEATTIFSSSFPQKRESRT"
     gene            complement(19632..20570)
                     /locus_tag="ACFOCA_000306"
     CDS             complement(19632..20570)
                     /locus_tag="ACFOCA_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6987082.1"
                     /translation="MLELNGLCKRFGNKTVADNICLTVGRGKILAVLGRSGCGKSTLL
                     NMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQK
                     MPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFS
                     SLDTHLRDRLRRMTAERIRKGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPET
                     LVQTPAGVQVARLMGLPNTDDDRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHP
                     EHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR"
     gene            complement(20579..21454)
                     /locus_tag="ACFOCA_000307"
     CDS             complement(20579..21454)
                     /locus_tag="ACFOCA_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6987083.1"
                     /translation="MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGN
                     LSPEWAERVKKDWEAGCSESSDGIFLNADGWSDMGGRLQHLTRTWNKAGLLHGWRNEC
                     FDLTDGGGNILFSLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDK
                     LDNTAAGGVSSGELPSETVCRESSEEAGLDKTLFPLIRPVSQLHSLRPVSWGVHNEIL
                     YVFDAVLPETFLPENQDGEVACFEKMDIGSLVATMLSGNMMHDAQLVTLDAFCRYGLI
                     DAAHPLSEWLDGIRL"
     gene            complement(21636..21712)
                     /locus_tag="ACFOCA_000308"
     tRNA            complement(21636..21712)
                     /locus_tag="ACFOCA_000308"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21676..21678),aa:Met,seq:cat)
     regulatory      21862..21961
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            22052..23953
                     /gene="thiC"
                     /locus_tag="ACFOCA_000309"
     CDS             22052..23953
                     /gene="thiC"
                     /locus_tag="ACFOCA_000309"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFC6987084.1"
                     /translation="MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRD
                     DIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLNE
                     RGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKSGGNVTQLHYARRGIITPE
                     MEFVAIRERLKLDELSQKSEYAKLLKQHAGQSFGANIPTHPDQITPEFVRREIAAGRA
                     IIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDL
                     STGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVD
                     YFTIHAGVLLRYVPMTADRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAY
                     DVSFSLGDGLRPGCIADANDESQFAELHTLGELTSKAWKHDVQVMIEGPGHVPLQRVK
                     ENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHL
                     GLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPE
                     RAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEF
                     VKKGAKIYS"
BASE COUNT         5947 a         6472 c         6510 g         5154 t
ORIGIN      
        1 tgcaatccgt ggatttcgcc cgcccgtcag ggaaaaggcg attatttttt gcttaggcaa
       61 acaattatcc tgttgagtat attgaagata agtatgctta tcgacactat gtcaaaacac
      121 cgccgatttt taaaaccgtt cctccgcatc cgtctttatg ccgtctgaaa cggcggcagg
      181 gttttaccgt tccgtgccgc aaatcgggca ttcggggttg cgcggcaggt cgaaatattg
      241 ccagccccct tccaaggcac ggtaaaccgc cagcctgccg tgcgacggtt cgcccacgtc
      301 tagcaggatt ttcagagcct ccgccgcctg cgtgcagccg atgatgccga ccagcggcga
      361 gaatacgccg aagagggaac agatgccgtc tgaagccgat ccgccgtcaa acaggcaggc
      421 gtaacacggc gagtcgggca agtcgggacg gtacacggca agttgccctt caaagcgcac
      481 cgctgctcct gaaaccagcg gtgttttcgt ttgtacgcag acacggttga cggcttggcg
      541 cgtggcgtag ttgtcgcagc agtctaaaac gatgtcggcg gtttgaacca aaccggtcag
      601 gcggcagccg tcgagttttt cgttgacggt gcggacatcg acgttatggt tgatgcgttt
      661 caggcggtct gccaaggctt cggctttggg cttgccgaca tcgccctcgt caaatgcgac
      721 ttggcgttgc aggttgtgca gctcgaccgt gtcggaatcg gctatggtca gcgtgccgat
      781 gccggaagcg gcgagatagg gcagggcggc ggcacccaaa ccgccgcagc cgacgaccaa
      841 aatatgcgcg gcggaaagtt tctgctgccc ttcgatgcca atttcgtcca agaggatgtg
      901 gcggctgtac cgcagcagga atgcatcgtc gttgtcgtgt tcggtcgtgg tcatgatgat
      961 gttcggaaaa aacagttgtg ggcgattgta acgctgccgt cgggcggcgt tcaacttcag
     1021 acggcatttc gggacacggg cggttaaagt gtgaacggtt tggcacggat gcggcatttg
     1081 aggtacattt acagtattta cggcaatgag agaaaaatca tgcaactgca tattctgaac
     1141 aatccgaagg acgcggcttt ggcggcggac gcggaatttc tgaaacaatc cctgttcaac
     1201 ctcctgcacg aagaagcctc gccattggtt gtcgaaacgg tcaaactctt gtccacttcc
     1261 gacgacagcg cggcattgat tgaaaaagta ttgccgcaat tggacgaaca acaaacccac
     1321 gatttaacct tggcctgcgg cctgttcgcc cagattttga atatcgccga agacgtgcac
     1381 cacgaacgcc gccgccaaat ccacgaagaa gccggacgcg gcggcgcgga aggcagcctg
     1441 acggaaaccg tccgcaggct caaagcgggg aaagccgacg gcaaatcggt gcagcggcag
     1501 ttggacaata cgtccgttac cgccgttttg accgcgcacc cgaccgaagt gcaacgccaa
     1561 accgtcttaa gcttcaaccg ccgcatccgc gcactgttgc cgcaacgcga acgctgcacc
     1621 aatgccgacg cgctggcacg gctgcgccgc gaaatcgaca ctatcctgct gggcttgtgg
     1681 cagaccagcg aaacgcgccg ccacaaactc agcgtcaacg acgaaatcaa caacggcgtg
     1741 tccatcttcc cgatgagctt tttcgaagcc ctgcccaagc tctaccgcaa tatggaacac
     1801 gactttcaga tggtctatcc cgatgtctgc gttccgaata tcctcaaaat cggcggctgg
     1861 atcggtggcg accgcgacgg caatccgttc gtttctgccg aaaccttgcg ttttgccttc
     1921 cgccgccacg ccgatgccgt gttccgtttt taccgtggcg aactcgacaa actttaccgc
     1981 gaactgccgc tctccatccg ccgcgtcaaa gtcaacgacg acgtaatggc actggcagcc
     2041 ctctcgcctg acgaagaact tgcccgcacg gaagaaccct accgccgcgc cattgcttac
     2101 atcatggcgc gcgctatggg caaagcgcgc gcgctcggtt tgggcatggg ctgcaaattc
     2161 ggctttctcg agccgtatgc ttcggcacaa gaatttctcg atgatttgaa aaaattgcaa
     2221 cgttccctta tcgacaacgg cagccgcctg cttgccgaag gccgtttggc agacctcatc
     2281 cgttccgtgt ccgtgttcgg cttccacatg atgccgctcg acctgcgcca acacgcaggc
     2341 aaacacgccg atgtggttgc cgagcttttc caacacgcag gcttggaaga ctacaacagc
     2401 ctgaacgaag aacaaaaaca agccgtcctg ttgcgagaat tgagccatca acgtccgctg
     2461 tacagcccgt tcatcacata cagcgaccat acccgccacg aactggcaat tttcaacgaa
     2521 gcgcgcaaaa tcaaagacga atttggcgaa gatgccgtaa cacaaagcat tatttccaac
     2581 tgcgaacaac ccagcgacct gctcgccttg gcattgctgc tgaaagaaag cggcctgttg
     2641 gcggtggaaa acggcaaacc gcacagccgc atcaatatcg tgccgctgtt tgaaaccatc
     2701 gaagcactcg aaaacgcctg tccggtcatg gaaaccatgt tccgcctcga ttggtacgat
     2761 gccctgctcg aaagccgcgg caacatccaa gaaattatgc tcggctactc cgactccaac
     2821 aaagacggcg gctatgttac cagctcatgg tgtctgtatc aggcggaatt gggcttggtc
     2881 gaactcttca aaaaatacga tgtccgcatg cgcctgttcc acggtcgcgg cggcagcgtc
     2941 ggacgcggcg gcggcccgtc ttaccaagcc attctcgccc aaccggcggg cagcgtggcg
     3001 ggacaaatcc gcattaccga acaaggcgaa gtcattaccg ccaaatacgc cgaccccggc
     3061 aatgcccaac gcaacttgga aaccttggtt gccgcgactt tggaagccag catcctgccg
     3121 gataaaaaag accctgatgc caaactgatg caggcattgt cggacgtatc gttcaaatac
     3181 taccgcgaac tgattaccca tcccgacttc atcgactact tcctgcaaac cagcccgatt
     3241 caggaaatcg ccaccctcaa cctcggcagc cgtcctgcca gccgcaagac cttagcgcgg
     3301 attcaagact tgcgcgcgat tccgtgggta ttttcctgga tgcagaaccg cctcatgctg
     3361 cctgcttggt acggtttcgg cagcgcggtg gaaaccttgt gcgaaggcaa tcccgacaca
     3421 ctgaccgccc tgcgcgaaca tgcccaaagc aatccgttct tccaagccat gctctccaat
     3481 atggagcaag tgatggcgaa aaccgacatc accctcgcgg aaaactatgc cggcttgagc
     3541 gaatcgcccg ataaggcaaa aatcatcttc gggatgatta aggaagaata ccgccgcagc
     3601 cgcaaagcac tgctcgacct gctgcaaacc gaagagcttt tgcgcgacaa ccgcagcctc
     3661 gcccgttcgc tcgctttgag gattccatac ctgaacgcgc tcaacggttt gcaagtcgcc
     3721 atgctcaaac gcctgcgtaa agaacccgac aatccgcacg cccttctgat ggtgcacctg
     3781 accatcaacg gcgtggcgca aggtttgcgc aatacaggct gatagtgccg catcggggca
     3841 aaatgccgtc tgaacgcctt tcagacggca tttccctgac cgcacttgca gagaaacacc
     3901 gattgtttta aagtgaacgg cagtgatatg ttgaaagacg accaatgaaa attaccgtta
     3961 tcggcgcagg ttcgtggggt acggcgctcg ccctgcactt ttcccaacac ggcaaccgcg
     4021 tatccctgtg gacgcgcaac gcagaccaag tccgccaaat gcaggaagcg cgtgaaaaca
     4081 aacgcggact gcccggcttt tcctttcccg aaaccttgga agtgtgtgcg gatttggcag
     4141 acgcgctcaa agacagcgga cttgtcctta tcgtaacctc cgttgccgga ttgagaagca
     4201 gcgcagagct gctcaaacag tacggcgcgg gacacctccc cgtcctcgcc gcctgcaaag
     4261 gattcgagca ggatacaggg ctgctgacct ttcaagtatt gaaagaagta ttgcccgaca
     4321 ataaaaaaat cggcgtactt tccggtccga gttttgcaca ggaactcgcc aaacaactgc
     4381 cctgcgccgt cgtcctcgcc tccgaaaacc aagagtggat tgaagaactc gtaccgcagc
     4441 tcaacacgac cgtcatgagg ctttacggca gtaccgatgt tatcggcgtg gcagtcggcg
     4501 gcgcggtaaa aaatgttatg gcgattgcca ccggattgtc cgacggtcta gagtacgggc
     4561 ttaacgcccg tgccgcactg gttacgcgcg gattagctga aatcacccgc cttgcctccg
     4621 caatgggcgc acagcccaaa accatgatgg ggctggcagg catcggcgac ctcatcttga
     4681 cctgcaccgg cgcactctca cgcaaccgcc gcgtcggctt gggtttggca gaaggcaagg
     4741 aactgcatca ggtgctggtc gaaatcggac acgtttccga aggggtcagc acgatagaag
     4801 aagtcttcaa tactgcctgt aagtaccaaa tcgacatgcc gattacccaa accctgctgc
     4861 aactcatccg caaagaaatg accccgcaac aggtcgtcga aaggctgatg gaacgcagcg
     4921 cgcgttttga ataaacaaca gacagatgcc gtctgaagcc ttcagacggc atacggacag
     4981 gtaaggttat gaaacaaaat atcgaaaaac tcgaaagcag cgtttatacg ctggtacaaa
     5041 aattcgaaac cctcgtcagc gaaaaccgcc gcctcaaaga aaccgtcgcc gaactcaaac
     5101 gggcgcacga gcggcaaaaa ctcgaacacg aaaccgccgt cgacgaactc agcgaagccc
     5161 tgctcgtcca agtcggcaaa ctcaaagaag acctgcaaaa caaaatcgac agcctgacag
     5221 aagaaaatac acgataccgc agcctgctcg aacagagcag ggaaaaaatc agcgcactgg
     5281 cagcgcgcct cccccaatgg caggaaacgc agcaataagg attaaaggat gaacatcgaa
     5341 caagtccaca tcgaagtcat gcacgcccgg ctgaccgtca acacgccggc agaagaaaaa
     5401 gacacactgt tgcaggcagt cggaatgctc aacggcaaag ccgaagccat ccgcgaaggc
     5461 ggacgcgtcg cggacagcga aaaaatcgtc attatggccg cgctcaacgt cgtccacgac
     5521 ctgttgaaaa cctccctgaa cggcggcgat ttggcaatcg gcgattttgc gcgtaaaata
     5581 gccgatatgg acaacgcctg ccaaaaagca ctatcccgct tggcgcagga ataacccctt
     5641 tttccctgcg gtgtccgcga aggcatatat tcctttgaac caataagttc gcttaaggtt
     5701 gccgggagca gtagtgggcg cgagcgtcct tttgcggacg cacccgaaac tacccgaggc
     5761 agccgccttg tcagcaaggt tcaagcggat tcggccgaaa cggctctcgc ggggattccc
     5821 attcaaaacc gcatcgcaac gatgcggttt ttcacattgg ccgccgcccc gcccgaaaaa
     5881 gcagtatgca gtctgccgaa atccggaaaa tccttccgta acgcggtaat gcgattgaca
     5941 aaatcgaatc ctgtctttaa aatttacaac tttctatatc tatttggatt tccactatga
     6001 aaaccttttc agcgaaaccc cacgaggtga agcgcgaatg gttcgtcatc gatgcccaag
     6061 acaaagtctt gggtcgcgtt gcggccgaag tcgccagccg tctgcgtggc aaacacaaac
     6121 ctgaatacac cccccacgtc gataccggcg attacatcat tgttatcaat gcggacaaac
     6181 tgcgtgtaac cggtgccaaa ttcgaagata aaaaatactt ccgccattcc ggtttcccag
     6241 gcggtatcta cgaacgcact ttccgcgaaa tgcaagagca attcccgggc cgcgctttgg
     6301 aacaagctgt aaaaggtatg ctgcccaaag gtcctttggg ttacgccatg attaaaaaac
     6361 tgaaagtgta tgcgggtgcg gaacacgccc atgctgcgca acaacccaaa gttttggaac
     6421 tgaaataagg acgcgacatg aacggtaaat actactacgg cacaggccgc cgcaaaagtt
     6481 cagtggctcg tgtattcctg attaaaggta caggtcaaat catcgtaaac ggccgtcccg
     6541 ttgacgaatt cttcgcacgc gaaaccagcc gaatggttgt tcgccaaccc ttggttctga
     6601 ctgaaaacgc cgaatctttc gacatcaaag tcaatgttgt tggcggcggc gaaaccggcc
     6661 agtccggcgc aatccgccac ggcattaccc gtgccctgat cgacttcgat gccgcgttga
     6721 aacccgcctt gtctcaagcc ggttttgtta cccgcgatgc ccgcgaagtc gaacgtaaaa
     6781 aaccgggtct gcgcaaagca cgccgtgcaa aacaattctc caaacgttaa tgttggaaat
     6841 tcaaaaaacc ctgcttatcg cagggttttt ttatttgtag tagacggttt cccattggca
     6901 atctaaagat tacagattgg gcaaaaatca aaaacagtat agtggattaa caaaaatcag
     6961 gacaaggcga cgaagccgca gacagtacaa atagtatggc aaggcgaggc aacgctgtac
     7021 tggtttttgt taatccacta tacatgaaaa aatagaaaaa ctgccgggta tggttgaata
     7081 aggggtcaga ccggttccag ttcgctcagt ccgggcaaat ctgcaaaacc gcgttcgcgt
     7141 atgatttggc aaaaattgtt cagatagctc ttgtccgtat cttcggtacg gatggcggca
     7201 tacagtttgc tttgcaatcc gtcggcagta atctgccggt gaacgacata gcctttttca
     7261 aggtagggca tgactgtcca atagggaagg gcggcaatgc cacgtctgct ggcaaccagt
     7321 tggataatgg cgatggtcag ctcgctgtgt cggcgcggcg ggttgatgtt tttcggaatc
     7381 aggatttttt tgggcaaatc cagcatctcg tcgggaacgg gataagtaat cagggtttcc
     7441 ccgataaagt cttcggcttc ccagacagtt ttggcggcaa gcggatggtc tggtgcgcaa
     7501 atgccgacca tttcgtaggc aaacagcggt tggaaagaaa taccgttttg tttttccgct
     7561 tcggaaacaa tggcaaggtc ggcacggtgt tgcagcagca gtccgatagg gtccgcttgg
     7621 aatcccgata cgatatccaa ttcgatttgg ggccatatcg ggcggaattc gcccattgcg
     7681 ggcatgagcc agtcgaaaca ggtatggcat tcgacggcaa tccgcaattc tcctgcctct
     7741 ccttctataa tgcgtgccaa atcacgttct gcatcggtaa cttgaggcaa caggtcgtga
     7801 gcgaggcgta acagcctttc tccaaccggg gtaaagcgca agggcgtgga ttttcgttcg
     7861 aacaacggtg cgccgtagtg gttttcaagc atacggattt ggtgggaaag tgcagattgg
     7921 gtaaggaaaa cccgtttggc ggcaagggag acgctgccgg tttcttcaag tgccagcagg
     7981 gtcttgaggt ggcgcagttc gatgatggaa tccatgaggt ttcagacggc atattgaacc
     8041 ggcgcatatt aaaataattc atatgcgggt gcaaatcgga aaaatgtgaa ttccagacat
     8101 tttgcgatta gaatgcccgc ttgtttaaag cgattaggaa aaaagatggt attgcgcagg
     8161 gattttctga cttggtgtaa tgaaacattg cagacagcgt tgtttaaaga ttacgcccct
     8221 aacggtttgc aggttgaagg gagggaatat atcgggaaaa tcgttacgtc ggtaacggca
     8281 agcagggcag cgattgattt tgctgtggag cagaaggcag atttgctttt ggtacatcac
     8341 ggtatgttct ggaaaaacga gttgccgacc gttactggtt ggaaaaaaga acggattgcc
     8401 gcactgttac ggcacgacat caatatggca ggctaccatc tgcccctgga tgcacatccc
     8461 acactgggca acaatgccca actcgccgac agattgggtt ttgcgacaga aaaacggttc
     8521 ggcgaacaaa acctgctcaa ctcgggcagc ctgaaacaag ccaagacact cggcgcattg
     8581 gcggcgcata ttgaaacagt tttgcaacgt aagcctgtcg tcatcggcaa acccgaacgc
     8641 gaaatccgac gggttgcatg gtgcagcggc ggggcgcagg ggttttttca gacggcaata
     8701 gacgaaggtg tcgatctgta tttgacgggg gaaatttccg aagcccaata ccaccttgcc
     8761 aatgaaacgg gtacggcttt catttcggca gggcatcacg cgacggaacg ttacggcgta
     8821 cgcgcgctgg cagaatcggc ggcagaggtt ttcgggttgg aagtgtgcca ttttgacgaa
     8881 aacaatccgg cttgagtctt gagaaatatc ataaaacttt accttatttt aaataatgct
     8941 ttgagtatca ctgcaaactg ggtaaaattg caacgtttaa tggctcggta ttcccaaaat
     9001 attaggacga ctgaataatg gataatcaag aaatcaacaa cggccgccgc cgtttcctga
     9061 cactcgcgac ctgcggcgcg ggcggagtgg cagcattggg tgtggcaacg ccgtttgtgg
     9121 ccagtttttt cccttcggaa aaagccaagg ccgccggtgc tgccgtcgag gtggatgtca
     9181 gtaaaatcga agcgggtcag ctgctgaccg ccgagtggca aggcaaaccg atttgggtgc
     9241 tcaaccgtac agatcagcag cttaaagacc tgaaaggcct gaacggcgaa cttaccgatc
     9301 ccaattccga tgcggaacag cagccggagt atgctaaaaa cgagacccgt tcgattaagc
     9361 cgaacatcct tgtcgccatc ggtatctgca cccatttggg ctgctcgccc accttccgtc
     9421 ccgacattgc ccccgccgat ttgggtgcag actggaaagg cggcttcttc tgcccctgcc
     9481 acggttcgaa attcgacttg gccggccgcg tatataaagg tgttcctgcc ccgaccaacc
     9541 tggttgtccc gccatataaa tacttgagcg acacaactat cttggtgggc gaagactaag
     9601 aataaggaac gataattatg gcaaaccaaa ccaatagcaa agcaaaagca ttgttaggct
     9661 ggatggacgc tcgtttcccc ctgtctaaaa tgtggaatga gcatttggct caatactacg
     9721 caccgaaaaa ctttaatttt tggtactact tcggctcttt ggccctgctt gtcctcgtga
     9781 ttcaaatcgt cagcggcatt ttcctgacca tgaactacaa acccgacggc aacctgaacg
     9841 cctaccatct gcctgctgcc tttactgcag tcgagtacat catgcgcgac gtgtccggcg
     9901 gttggattat ccgctacatg cattccaccg gcgcatcttt cttcttcatt gttgtttatc
     9961 tgcacatgtt ccgtggtttg atttacggtt cgtacaaaaa accccgtgag ttggtgtgga
    10021 ttttcggttc tctgattttc ttggcattga tggcggaagc ctttatgggc tacctgctgc
    10081 cttggggtca gatgtccttt tggggggcgc aggtaattat taacctgttc tccgccatcc
    10141 ctgttatcgg tccggatttg tccacttgga ttcgcggcga cttcaacgtt tccgacgtta
    10201 ccctgaaccg tttctttgcc ctgcacgtta tcgcggtacc tctggtattg ctcggcttgg
    10261 ttgtggcgca catcatcgcc ctgcacgaag tgggttctaa caaccctgac ggcgttgaaa
    10321 tcaagaaaaa caaagacgaa aacggtatcc cgcgcgacgg tatcccattc catccttact
    10381 ataccgttaa agacatcttg ggtgtggttg tattcctgat tgtcttctgt gccgtattgt
    10441 tcttcgcacc ggaaggcggc ggctacttcc tcgaagcgcc gaacttcgat gcggcaaatg
    10501 cgctgaaaac acccccgcac attgcgccgg tatggtattt cacaccgttc tacgccattt
    10561 tgcgtgcgat tccctcgttc ttgggaacgc aggtttgggg tgtaatcggt atgggcgcgg
    10621 cggtcgtgtt gattgccctg ctgccttggc tggatagggg cgaggtgaaa tccgtccgtt
    10681 accgcggtcc gattttcaaa accgcattgg tcttgttcat catttccttt atcggtttgg
    10741 gtattttggg cgcgatggtg gcaaccgata cgcgtacttt ggtcgcgcgc atcctgtcct
    10801 tcgtctattt cgcattcttc ctgggtatgc cgttctatac caagctggat aaaaacaaac
    10861 cggttcccga acgcgtaacc atgagcaccg ccaaacaaaa aatcatgttc tttgtttacg
    10921 tcggcattac cgccgtgggt gcttacctgt ttgcaaccaa catctgatga gggcagtcaa
    10981 aatgaaacaa gctatgaaaa attggtttgc tgccttgctg ttggcagtac ccatgggtgc
    11041 ggcatttgct tcgggcggtc atgcacacta tgagaaagtc gatatcgatt tgcgcgacca
    11101 agtcagcctg cagcgcggcg cacaaatctt taccaactat tgcctgtcct gccactcggc
    11161 aagcggtatg cgtttcaacc gtttgaaaga catcggtttg actgacgaag aaatcaagaa
    11221 aaacctgatg tttaccaccg ataatgtcgg cgatgtcatg cattcggcga tgaacccgaa
    11281 agatgcggca aaatggtttg gtgctgctcc gcccgatttg acattgattg cgcgttccaa
    11341 aggtgcagac tacctttacg cttatatgcg cggcttctat aaagatccga cccgtccgag
    11401 cggctggaac aatactgtat tcgataaagt cggtatgccc cacccgttgt gggaacagca
    11461 aggcgttcaa gccgttgagt tggatgccaa aggtcagccg gttatggtaa aagacgaaca
    11521 cggcgagatg aagcctaagc tgtattggga atctaccggt ttgcacagcc gccgtctgcc
    11581 taacggcaaa gtgatccaaa aagagtacga cgcatatgta cgcgatttgg tcaattacct
    11641 tgtgtacatg ggcgaacctg cacaactgca acgcaaacgt ataggctatg tcgtgatgat
    11701 tttcctattt gcggttatgc tgcctttggc gtatttcctg aaaaaagaat attggaaaga
    11761 cgtacactaa gcgtttggaa caaaagggca aatcctttag ggtttgccct tttttcattt
    11821 tgcctgccgt ttgaaaagcc taaatccgta tgccgtctga acatagctgc aacatttcag
    11881 acggcatcat tctaaaaatg tcagacatcg ggaacttaat cagggtttgt ggcagattga
    11941 tattgaatta ggaaaaggtc tgaaaccgca agcagcatgg taaggcgatg tcgaacaggt
    12001 ttaaagccaa tccgctatat tttttggagc tatgtcgaac aaacaggtag aatcggaata
    12061 agcggcggtt ttgtccggtg tgaaaatgtt tgaatattag gatgattgat ggaactgatg
    12121 actgttttgc tgcctttggc ggcgttggtg tcgggcgtgt tgtttacatg gttgctgatg
    12181 aagggcaggt ttcagggcga gtttgccgat ttgaacgcgc aactggcgga aaaggcggca
    12241 agatgtgatt ttgtcgaaca ggcacacgca gaaattgcat cggaattggc cgttttggac
    12301 gggaaatacc gacatttgca ggacgaaaat tatgctttgg gcaaccgttt ttccgcagcc
    12361 gaaaagcaga ttgcccattt gcaggaaaaa gaggcggaat cggttcggct gaagcagtcg
    12421 tatatcgagt tgcaggaaaa ggcacagggt ttggcggttg aaaacgaacg tttggcaacg
    12481 cagctcggac aggaacggaa ggcgtttgcc gaccaatatg ccttggaacg ccaaatccgc
    12541 caaagaatcg aaaccgattt ggaagaaagc cgccaaactg tccgcgacgt gcaaaacgac
    12601 cttgccgatg tcggcaaccg ttttgccgca gccgaaaaac agattgccca tttgcaggaa
    12661 aaagaggcgg aagcggagcg gttgaggcag tcgcataccg agttgcagga aaaggcacag
    12721 ggtttggcgg ttgaaaacga acgtttggca acgcaaatcg aacaggaacg ccttgcttct
    12781 gaagagaagc tgtccttact gggcgaggcg cgcaagagct tgagcgatca gtttcaaaat
    12841 cttgccaaca cgattttgga agaaaaaagc cgccgtttta ccgagcagaa ccgcgagcag
    12901 ctccatcagg ttttgaaccc gctaaacgaa cgcatccacg gtttcggcga gttggtcaag
    12961 caaacctatg ataaagaatc gcgcgagcgg ctgacgttgg aaaacgaatt gaaacggctt
    13021 caaggattga atgcgcagct gcacagcgag gcaaaggccc tgaccaacgc gctgaccggc
    13081 acgcagaaca aggttcaggg taattggggc gagatgattc tggaaacggt tttggaaaat
    13141 tccggcctcc agaaagggcg cgaatatgtg gttcaggcgg catccgtccg aaaagaggaa
    13201 gacggcggca cgcgccgcct ccagcccgac gttttggtca acctgcccga caacaagcag
    13261 attgtgattg actccaaggt ctcgctgaca gcttatgtgc gctacacgca ggcggcggat
    13321 gcggatacgg cggcacgcga actggcggca cacgttgcca gcatccgtgc acacatgaaa
    13381 ggcttgtcgc tgaaggatta caccgatttg gaaggtgtga acacattgga tttcgtcttt
    13441 atgtttatcc ctgtcgaacc ggcctacctg ctggcgttgc agcatgacgc gggattgttc
    13501 caagagtgtt tcgacaaacg gattatgctg gtcggcccca gtacgctgct ggcgactttg
    13561 aggacggtgg cgaatatttg gcgcaacgaa cagcaaaatc agaacgcact ggcgattgcg
    13621 gacgaaggcg gcaagctgta cgacaagttt gtcggcttcg tacagacgct cgaaagcgtc
    13681 ggcaaaggca tcgatcaggc gcaaagcagt tttcagacgg cattcaagca acttgccgaa
    13741 gggcgcggga atctggtcgg acgcgccgag aaactgcgtc tgttgggcgt gaaggcaggc
    13801 aaacaacttc aacgggattt ggtcgagcgt tccaatgaaa caacggcgtt gtcggaatct
    13861 ttggaatacg cggcagaaga tgaagcagtc tgacttgtgc ggaaaaatat tgtttcagcc
    13921 ggggcgggaa tgccgaaagc gcggcgtaac tgtactggtt ctgattttgg gtttgtttga
    13981 agtacttacc aaagccttgt ctggcgaggt acaccggcaa ggcggcggtt gtctgagcct
    14041 tttgtgtttc agacggcatc agtgcagatg atgccgtctg aagaccgtag ggaaggcggt
    14101 tagaaaaacg gattgtgccg cttttcgtgt ccgatggaag tcatacgccc gtgtccggcg
    14161 acaacttgca cggtttcggg aagggtgaat aatttgttgc ggatattatt gattaagtcg
    14221 gcgtggttgc cgcgcggaaa atcggttctg cctatggttt cgtaaaacag cacgtcgccc
    14281 gcaatcagca attccgcctc ggcacaataa aagacgatat gtcccggcgt atggcccgga
    14341 atatgcagca cttgaaaggc atagcgtccg accgtgagcg tttcgccttc ttcgagccaa
    14401 cggttcggcg caaaggcggg cgagacggga aatccgtatt gcgcggtggt ttgcggcagc
    14461 gattggagca ggaattcatc gtccggatgc ggcccgagga cagggacttt atgcgttttc
    14521 aacatttcga ccacgccgcc cgcgtgatcg agatggccgt gcgtcagcca gattgccgtg
    14581 agcgtaagtt tgcggtttgc caacgcttgc agcaggaacg gcacgtcgcc gccgacatcg
    14641 gtcaggacgg cttcgccgct ttcgtcgtcc caaatcaggg tgcagttttg gcggaagggg
    14701 gtaacgggga agatttcgta acgtagggtc atcggcgtgt tcctaaacgg tttttcagac
    14761 ggcatcgggt ttgccgtttg ttttatggcg gtttgccgcc cgttttgata ttgggggaat
    14821 cagatgatta agaagacaat cggcggcatc ataccgattt ttacggcggt tttcatccct
    14881 gcatcagcag gcgcggcgga tttgatgctg gcgcaggaat acaaagggca ggacattgca
    14941 ggctgggcga tgagcgagaa actcgacggc gtgcgcgcgt attgggacgg taaacattta
    15001 gtcagccggc aaggatatgt atttacaccg cccaaaggct ttaccgcgca gtttccgcct
    15061 tatcctttgg acggcgaatt gtatagcgga cgcggtcagt tcgagcagat ttccgctacc
    15121 gtgcgttctg cttcttcaga ctggcgcggt atccgcctgc acgttttcga tgtacccaag
    15181 gcgcagggca atctctacca acgtttggca gtcgcaacgc agtggctgaa aacgcatccg
    15241 aacgcgccga ttaccatcat cccacaaatc aaagtgcgcg accggcagca cgcgatggac
    15301 tttttaaaac aaatcgaagc gcagggcggc gaaggcgtga tgctgcgtca gcccgaatcc
    15361 cgttacagcg gcggcaggag cagccaatta ttgaagctga aaagccaata cgacgacgaa
    15421 tgcacggtaa cgcggcacta tgagggcaaa gggcgaaacg ccggacggtt gggcgcggtc
    15481 ggctgcaaaa accggtacgg cgaattccgc attggcagcg gcttcaaaga taaagaccga
    15541 gacaacccgc ccaaaatcgg cacactgatt acctaccgct accgtggctt tacgcagaaa
    15601 ggcacgccga aattcgccac gtttgtgcgc gtgcgtaccg accgctgagc aggacagttc
    15661 agacggcatc cgatactttg gtttataatt ttccttttac cgaccgattc cgacatatga
    15721 ccgatttaga aaccaaacgc cttgaaacac aggcgatgct tgaaaacgcc gatcttttgt
    15781 tcgaccaagg ccaatgccgt gccgcactgc aaaaagtggc ggacgagatt acgcgcgatt
    15841 tgggcggcaa atatccgctg ctgctgcccg tgatgggcgg cgcggtggtg tttacggggc
    15901 agttgctgcc gctgttgcgt tttcccttag attttgatta tgttcacgtt tcccgttacg
    15961 gcgacaagct ggagggcggc gcgttcaact ggaagcgtat gcccgatgcg gaacaaatcc
    16021 ggggcaggca cgtcgtcgtg ctggacgata ttttggacga agggcatacg atgtccgcca
    16081 ttcaagccaa acttttggaa atgggtgcgg caagctgccg tgcggcggtg ttcgccaaca
    16141 agctgatcga caaacccaag cctatccgag ccgattatgt cggactggat gtgccgaacc
    16201 gttatgtttt cggttacggc atggatgcgg cgggctgctg gcgcaatctg ggcgagattt
    16261 acgcattgga cggaaaataa ggacgcgatg ccgtctgaat gcctttcaga cggcattgcg
    16321 cccatacgcc ggcaggacaa cgaggaacag gacgcataat atgatagggc ttttaatcat
    16381 cacacacgaa accataggcg aagcctaccg caagctggca catcattttt tcccgggcgg
    16441 gctgcctgaa aacgtccgca tactcggcgt gcaaccgacg gaagaccaag acgacatcat
    16501 caacaacgcc attgccgcgc ttcaggaatt tcccgacaac gacggcgtgc tgattatgac
    16561 cgacatcttc ggcgcgaccc cctgcaatgc cgcccgccgc ctcgtgcgcg aaaacaaatc
    16621 ggcgattttg accgggctga acgcgccgat gatggttaag gccgtccaat attcgccggc
    16681 ggcggaagac cttgccgcct ttaccgaatg tgtcagagag gcggctgtaa aaggcatttt
    16741 cgccatcacg tccgcgcccg aagatttggt gtgccggcgc agcggcgatg ccgtctgaag
    16801 aagcggcagg gcaggaaaac attttaaacg gcgtctgctg ccgatataca taacacggga
    16861 accgaaatgc tcaaacaatc catcgaaatc atcaacaaac tcggactcca cgcccgcgcg
    16921 tccaacaagt tcacccaaac cgcgtcccaa ttcaaaagcg aagtctgggt tacgaaaaac
    16981 gacagccgcg tcaacggcaa aagcattatg gggctgatga tgctcgccgc cgccaagggt
    17041 acggtcatcg agctggaaac cgacggcgcg gacgaggcgg aagcgatgcg cgccctgacc
    17101 gacttaatca acggctactt cggcgagggc gaataatgag tatcgtgctg cacggcgtgg
    17161 cggcgggcaa aggcattgcc gtcggttgcg cccacctgat tgcgcgcggt acggaggaag
    17221 tgccgcagta tgatgttgcg gaggcggaca ccgatgccga agccgaacgt ttcgatgccg
    17281 ccgtcaaagc cacgcgcaaa gagttggaac agctccgcag cgcgattccc gaaaacgccc
    17341 cgaccgagtt gggcgcgttc atctcgctgc acctgatgct cttgaccgat gttaccttgt
    17401 cgcgcgaacc cgtcgatatt ttaagggaac aaaaaatcaa cgccgagtgg gcattgaagc
    17461 agcagagcga caaactcgcc gcccaattcg acaatatgga cgatgcctat ttgcgcgaac
    17521 gcaagcagga tatgctgcaa gtcgtccgcc gcatccacaa caacctgatc gggcagggca
    17581 acgagttgga agttgccgac aacctgtttg acgaaaccgt tctgattgca aacgaccttt
    17641 cgcccgccga cacggttttg tttaaagagc agcgcattgc cgccttcgtt accgatgccg
    17701 gcggccccac cgggcatacg gcgattttgg gcaggagctt ggacatcccg tccgtcgtcg
    17761 ggctgcacaa cgcgcgcaaa ctgattaccg aaggcgaaac ggtcattgtg gacggtatca
    17821 acggcgtgtt gattatcgcg ccggatgagt cggtgttgaa cgaataccgc cgccgtgccc
    17881 gcgaataccg cagccacaaa cgcgatttga acaagctcaa aaaaaccgcc gccgccaccg
    17941 ccgacggggt ctgcatcgag cttgtgggca atatagaatc cgccgaagac gtgaaaccgc
    18001 tgcacaacct cggcgcagac ggcatcgggc tgttccgcag cgagtttctt tacctcaacc
    18061 gcgatacgat gccgtctgaa gacgagcagt acgaagtgta caacgcgatt gtcaaaaaaa
    18121 tgaagggcaa aagcgtaacg atacggacag tcgatttggg agtggacaaa aacccgcgct
    18181 ggttcgggaa aaacagcacg cccaacggca gcctcaaccc cgcgctgggc atgaccggca
    18241 tccgcctgtg ccttgccgaa ccggtcatgt tccgcaccca gatgcgcgcc atcctccgtg
    18301 cggcggtaca cggtcccgtc cgcatgatgt ggccgatgat tacctccgta tccgaagtgc
    18361 gccagtgcct catccacctc gacaccgcgc aacgccagct tgccgaacgc ggcgatgcct
    18421 tcggtaaagt cggcatcggc tgtatgattg aaattccgtc tgccgcgctg accgtcggca
    18481 gtattttgaa actggtcgat ttcatctccg tcggcaccaa cgacctgatt caatacatct
    18541 tgtccgtcga tcgcggcgac gacagcgtca gccatcttta ccagcccgga catcccgccg
    18601 tgctgaaaat gctgcaacac gtcatccgca ccgccaaccg catggacaaa gacgtgtccg
    18661 tatgcggcga gatggcgggc gatacggcgt ttacccgcat cctgcttggt atggggctgc
    18721 gccgtttttc catgaatccg aacaacatcc tgcccgtcaa aaacatcatc ctgcacagca
    18781 atatcgcaca gctcgaaaac gagattgcca aaatcgtccg ctgcgaggac gaggaaaagg
    18841 cggaaaagct gatcaaacag atgaacagcg tgtctgtcga ggaagaagcc gacttcaagg
    18901 ggcggaaata aatacggcag gtaaaaaata gaaatactta acaatgcccg caatctgaaa
    18961 ttttgccatt cctgcaaaat agaaaaccga aacagaaacc caaaatcggc cattccctca
    19021 aaaacagaaa accaaaatca gaaacctaaa atccgtcatt cccgcgcagg cgggaatcta
    19081 ggtctgtcgg cacggaaact tgtcgggtaa aacggtttct ttagatttta cgttctagat
    19141 tcccgctttt gcgggaatga cgatgaaaag attgttgtcg cttcggataa atttttgtcg
    19201 cgttgggttc tagattcccg ctttcgcggg aatgacggca gagtggtttc agttgctctc
    19261 gataaatgcc gccatctcaa gtctcgtcat tcccttaaaa cagaaaaccg aaatcagaaa
    19321 cctaaaatcc cgtcattccc gcgcaggcgg gaatctaggt ctgtcggcac ggaaacttat
    19381 cgggaaaaac ggtttcttta gattttatgt tctagattcc cgcttttgcg ggaatgacga
    19441 tgaaaagatt gttgtcgctt cggataaatt tttgccgtgt tgggttctag attcccgctt
    19501 ttgcgggaat gacggcaggg tggtttctgt tgtttcggat aaattttgca gccctgataa
    19561 aaaatatggc tgctttggta aaaaaatgcc gtctgaaagg ttttcagacg gcattttgtt
    19621 tttaagaagc atcaacggaa gcggacgatt tccctgtctt cgatatggat gcgtaccgta
    19681 tcgtttcccg atatttcacc ggcgtgcggc atatcgaggt tcagccacag gatgccgtgt
    19741 tccggatgga ggacggacag gctgaacgat tcgggcaaac aggtacggga taatacgcgg
    19801 cactccatgc cgtcttggtc gaaacgcacc gcatgttgcg gaatatggcg gtcatcgtcg
    19861 gtattgggca aacccatcag tcgggcgacc tgcacgccgg caggcgtttg aaccaaggtt
    19921 tcgggcgtac cgcattgaag gattttcccc tcgtgcatga cggcgatttc gtccgccgcc
    19981 gtgcaggcct cttcgggcga atgcgtcacc aaaacggcag ggatgccgcc cttgcggata
    20041 cgttcggcag tcatgcggcg cagccggtcg cgcaaatgcg tgtccaaact ggaaaacgat
    20101 tcgtccaaca gcagcaggga agggcggaca accaaagcgc gcgccaacgc caaccgttgc
    20161 ttctcgcctc cggaaagttt ttcaggcttg cggtgcgcct cgttttccag tccgacttcg
    20221 gcaagtgccg ccatggcaag gcgttcggct tcggctttcg gcattttttg cattttcaaa
    20281 ccgaatgccg cattttccag cgcactcata tggggaaaca gcgcgtaatc ttgaaacatc
    20341 agagaaatac ggcgtttttc gggcggcata cgggtaatgt tttccccgtt cagccatatt
    20401 tccccaccgt ccggccggac aatccccgca atcatattca gcagggtgga ttttccgcat
    20461 cccgaccgcc ccaaaacggc gagtattttg ccgcgcccga cagtcaggca gatgttgtcg
    20521 gcgacggttt tattgccgaa gcgtttgcag agtccgttca gttcaagcat ggcgcatcct
    20581 ataaacgtat gccgtccagc cactcggaca gcggatgggc ggcatcaatc agaccgtaac
    20641 ggcaaaacgc gtccagcgta accagttgcg cgtcgtgcat catgtttccc gacaacatgg
    20701 tggcaaccaa gctgccgatg tccattttct caaaacacgc aacctcaccg tcctgatttt
    20761 caggtaggaa ggtttcgggc aggacggcat cgaatacata caggatttca ttgtgcacac
    20821 cccagctgac ggggcgcagg ctgtgcagct gcgataccgg gcggatgagc ggaaacagcg
    20881 ttttatccaa accggcttct tcgctgcttt cgcgacacac ggtttcagac ggcaattcac
    20941 cgctggaaac accgccggcg gcagtattgt cgagtttgtc gggatcgact gctttgtgcg
    21001 gactgcgcct gcctatccag aaatgccatc ggccgtccga ttcggtcaga ccgttgagat
    21061 ggacggcgcg gctgagtagt ccgaacgggc ggaaagcggc gcgttcaagt gagaacaaga
    21121 tattgccgcc gccgtcggtc aggtcgaaac actcgttgcg ccatccgtga agcagccccg
    21181 ccttgttcca tgtgcgggtg aggtgctgca agcggccgcc catatctgac cagccgtccg
    21241 cattcagaaa aatgccgtct gaagactccg agcagcctgc ctcccagtct tttttgacgc
    21301 gctccgccca ttccggcgac aggttgccca aaggcaggcc gttcagatac agtgttttcc
    21361 agcaactttc tgcaccgtaa cttgcttttg cccactcgaa cagggcatca aggtcgtgtt
    21421 tgctgacgga ttcggtaaaa cggacggtcg gcatagtcgg ctttcttgaa gacaatgcgg
    21481 aagattgtag ccaaactgcc tgaatttgca accgcaaaca gacggcgggc tgccgttccg
    21541 atattgcggc aggaaggaaa atccggcaaa aaacggaggc ggcaggaaac aggcaaaaca
    21601 aaacccctcg gcattgaacc gaggggtttg atatttggtt gcgggagcag gattcgaacc
    21661 tacgaccttc gggttatgag cccgacgagc taccatgctg ctccatcccg cgtcagaaga
    21721 tgaaactata cggcagattt tttatgttgt caaacattat ttccgcgaaa aatcataaaa
    21781 ttttgccgtc cggcggttta tgcctgattt gaaatatcat tttctttaca aaagttcatg
    21841 ttcgtgattt aattttggtt aacatcgaaa caggggtgct gcctgatgtt caggcggctg
    21901 agaaataccc tttacacccg atcgggataa tacctgcgtg gggagttttc acggattctg
    21961 tctttcagac agcattggtt ttcaaatgcc gtctgaaaac gcaaaacgct cctgtttctt
    22021 tattctaaac gagaaaacag gagcattttt tatgactacg ccaaaaaaaa ccgccaaaac
    22081 ttccggcaac gaagcgcgcg aacttgccga cttgagcgaa gacatcggta tccgcttcaa
    22141 atatccgaac tcggaacgcg tgtatctgca aggcagccgc gacgacatcc gcgtgccttt
    22201 gcgtgaaatc cgtcaggacg acacctatac ggcgcaaggc gcggaagcca acccgccgat
    22261 tcccgtctat gacaccagcg gcgtgtacgg cgatccagcg gcacacatcg acctgaaaca
    22321 aggcctgccg cacatccgca ccgcatggct gaacgaacgc ggcgataccg aaatcctgcc
    22381 caagctctcc agcgaatacg gcatcgaacg cgcacacgat ccgaaaaccg cccatctgcg
    22441 cttcaaccaa atcacccgcc cgcgccgcgc gaaaagcggc ggcaacgtta cccagcttca
    22501 ctacgcgcgc cgcggcatca tcacgcccga aatggagttt gtcgccatac gcgaacgttt
    22561 aaaattagac gaattgtccc aaaaatcgga atacgccaaa ctcttgaaac agcacgcagg
    22621 gcaaagtttc ggcgcgaata tcccgaccca tcccgaccaa atcacgcctg aattcgtgcg
    22681 ccgagaaatt gccgccggac gcgcgattat ccccgccaac atcaaccacc ccgaactcga
    22741 accgatgatt atcggccgca acttccgcgt caaaatcaac ggcaacttgg gcaattccgc
    22801 cgtcacttcc agcctgaccg aagaagtcga aaaaatggtg tggtcgctgc gttggggcgc
    22861 ggacacgatt atggatttgt ccaccggcgc gcacatccat gaaacgcgcg aatggattat
    22921 ccgcaacgcg cccgtcccca tcggcaccgt gccgatttac caagcgttgg aaaaaaccgg
    22981 cggcattgcc gaagatttga cttgggattt gttccgcgac accttaatcg agcaggcgga
    23041 acaaggcgtg gactatttca ccatacacgc aggcgtgttg ctgcgttatg tgccgatgac
    23101 tgccgaccgc ctcaccggca tcgtatcgcg cggcggttcg attatggcga aatggtgttt
    23161 ggcacatcat cgggaaaact tcctttacac gcatttcgac gaaatctgcg aaattatgaa
    23221 ggcgtatgac gtatcgttca gcctcggcga cggtttgcgt cccggctgca ttgccgatgc
    23281 caacgacgaa tcccaattcg ccgagctgca caccttgggc gaattgacct ccaaagcgtg
    23341 gaaacacgac gtacaggtga tgatcgaagg tcccggccat gtgccgctgc aacgcgtcaa
    23401 agaaaatatg accgaagagt tgcaacactg ttttgaagca ccgttttaca ccctcggccc
    23461 gctcgttacc gacatcgccc ccggctacga ccacatcacc tcgggcatag gcgctgccaa
    23521 tatcggctgg tacggcacgg cgatgctctg ttacgttacc cccaaagaac atttgggact
    23581 gcccgacaaa gaagacgtgc gtaccggcat catcacctac aaactcgccg cccacgccgc
    23641 cgacctcgcc aaaggctggc cgggcgcaca gttgcgcgac aacgccctga gcaaggcgcg
    23701 tttcgagttc cgctggcgcg accagttccg cctaagcctc gaccccgaac gcgccgaaag
    23761 cttccacgac gaaaccctgc ccgccgaagg cgcgaaaatc gcccacttct gttcgatgtg
    23821 cggccccaaa ttctgctcga tgaaaatcac gcaggaagtg cgcgactacg ccgacaagca
    23881 aaaagcccaa cggcagggca tggaggaaaa agcggtcgag ttcgtcaaaa aaggagcgaa
    23941 gatttacagc taaaacgtca agcaaaaaat gccgtctgaa acccggaaaa aaggcttcag
    24001 acggtattct ttcgcttgtg aaaatatagt ggattaacaa aaatcaggac aaggcgacga
    24061 agccgcagac agtacagata gta
//
LOCUS       DAXIFS010000009        23650 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.009, whole genome shotgun sequence.
ACCESSION   DAXIFS010000009 DAXIFS010000000
VERSION     DAXIFS010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23650
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.009"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(65..904)
                     /locus_tag="ACFOCA_000310"
     CDS             complement(65..904)
                     /locus_tag="ACFOCA_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFC6987085.1"
                     /translation="MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVD
                     ATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNG
                     DWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
                     AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPG
                     IPGIGKKDDWAPRIKKGKETLHKHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSG
                     AKF"
     gene            1189..1264
                     /locus_tag="ACFOCA_000311"
     tRNA            1189..1264
                     /locus_tag="ACFOCA_000311"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1222..1224,aa:Arg,seq:ccg)
     gene            complement(1329..2522)
                     /locus_tag="ACFOCA_000312"
     CDS             complement(1329..2522)
                     /locus_tag="ACFOCA_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HFC6987086.1"
                     /translation="MYRHIEYYPGDPILSLVETFKNDPRPEKVNLSIGIYFDDEGKMP
                     VLESVSRAETARAATPVPSPYLPMEGLDTYRSAVQHLLFGKDNPALAQGRIVTVQTLG
                     GSGALKVGADFLHRWFPEACAYVSDPTWDNHRGIFESAGFEVGTYPYYDPAAVGVKFD
                     EMTAFFNTLPENSVLILHPCCHNPTGVDMSEQQWDEVLHIIKTRKLIPFMDIAYQGFG
                     GDLDSDAYAVRKAVEMELPLFVSNSFSKNLSLYGERVGGLSVVCPNKEEADLVFGQLK
                     FTVRRIYSSPPAHGAYIAADVMNSPELYALWQNEVYMMRDRIRAMRQKLYDVLTAQIP
                     DRDFTYFIKQRGMFGYTGLSVEQVRRLRDEFAVYLLDSGRMCVAGLNTSNTDYVARAF
                     AEVLK"
     gene            complement(2528..3631)
                     /gene="trmA"
                     /locus_tag="ACFOCA_000313"
     CDS             complement(2528..3631)
                     /gene="trmA"
                     /locus_tag="ACFOCA_000313"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFC6987087.1"
                     /translation="MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFR
                     IWHEGGEMFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRW
                     YAVEFLSTLSGEMLVTMIYHKRLDNEWMQAAQALQQQLDISVIGRSRGQKIVLKQDYV
                     TETLKVGNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTL
                     PLSEKFERVLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLK
                     DGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETH
                     TVERAALFDQFPFTHHIESGVLLKKKILGKSKR"
     gene            3774..4874
                     /gene="aroC"
                     /locus_tag="ACFOCA_000314"
     CDS             3774..4874
                     /gene="aroC"
                     /locus_tag="ACFOCA_000314"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFC6987088.1"
                     /translation="MAGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFD
                     LDRRKPGTSRHVTQRRETDQVEILSGVFKGKTTGTPIALLIRNTDQRSKDYGNIAQSF
                     RPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV
                     GEKEIRFEGCEHISQNPFFAANHSQIAELENYMDSVRKSLDSVGAKLHIEATNVPVGL
                     GEPVFDRLDAEIAYAMMGINAVKGVEIGAGFGSVVQRGSEHGDELTPQGFLSNHAGGI
                     LGGISTGQNICVNIAIKPTSSIATPRRSIDINGDPVELATHGRHDPCVGLRAAPIAEA
                     MLALVLIDHALRHRAQNADVQVNTPDITLSNK"
     gene            4966..5391
                     /locus_tag="ACFOCA_000315"
     CDS             4966..5391
                     /locus_tag="ACFOCA_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FINO family protein"
                     /protein_id="HFC6987089.1"
                     /translation="MIQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPL
                     ALGIDQDLITALPQYDPTLIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEE
                     QAIAQNHPFVQQALQQQSAQAAAETPSVEAEAAESSAAE"
     gene            complement(5465..7450)
                     /gene="parE"
                     /locus_tag="ACFOCA_000316"
     CDS             complement(5465..7450)
                     /gene="parE"
                     /locus_tag="ACFOCA_000316"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HFC6987090.1"
                     /translation="MAKNNQYSESSITVLKGLEPVKERPGMYTRTDSPTHICQEVIDN
                     AADEALGGFATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKF
                     NKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVG
                     KCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEA
                     HTQTWHYPDGLKSYLTDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEE
                     GSCANESYVNLIPTPLGGTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTA
                     FVLSARVLDPQFQGQTKDKLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQ
                     AQARMRSVKKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKA
                     TQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAI
                     LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA
                     LDQNELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPE
                     GADDETRDIFVKLMGKGEAAARRAWMEREGDTAELDI"
     gene            complement(7517..8041)
                     /locus_tag="ACFOCA_000317"
     CDS             complement(7517..8041)
                     /locus_tag="ACFOCA_000317"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFC6987091.1"
                     /translation="MLDREGYRPNVGIILTNNRDEVFWGKRVREHSWQFPQGGIKPGE
                     SPETAMYRELYEEVGLLSQHVKIVGRTRDWLRYDVPNNWVRREWRGSYRGQKQIWYLL
                     RLTGRDCDVNLRATRHPEFDGWRWHQYWAPVDEVIDFKRDVYLGALKELSSRFLRGME
                     SYEDFAARQLSGNR"
     gene            8206..9501
                     /gene="serS"
                     /locus_tag="ACFOCA_000318"
     CDS             8206..9501
                     /gene="serS"
                     /locus_tag="ACFOCA_000318"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFC6987092.1"
                     /translation="MLDIQLLRSNTAAVAERLARRGYDFDTARFDALEERRKSVQVKT
                     EELQASRNSISKQIGALKGQGKHEEAQAAMDQVAQIKTDLEQAAADLEAVQKELDAWL
                     LSIPNLPHEDVPFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSG
                     ARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDL
                     FHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGK
                     DTRGLIRQHQFDKVEMVQIVHPEKSYEALEEMVGHAENILKALELPYRVITLCTGDMG
                     FGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKDENGKNRLVHTLNGSGL
                     AVGRTLVAVLENHQNADGSINIPAALQPYMGGVAKLEVK"
     gene            complement(9579..10577)
                     /locus_tag="ACFOCA_000319"
     CDS             complement(9579..10577)
                     /locus_tag="ACFOCA_000319"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008720 - D-lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0070404 - NADH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6987093.1"
                     /translation="MKIAIYGTKSYDREHFTRANRHFGFELEFFDFMLDAKTAKMAEG
                     AEAVCIFVNDDGSRPVLEKLAQIGVKTVALRCAGFNNVDLKAAEELGLKVVRVPAYSP
                     ESVAEHTVGLMLTLNRRIHKAYQRTRDANFSLEGLTGFNMYGKTAGVIGTGKIGIATM
                     RILKGFGMNLLAHDPFCNPEAEKIGGRYVDLDELYAQSDIITLHCPATPENHYMLNEA
                     AFDKMKDGVMIINTSRGGLIDSAAAIEALKRRKIGALGMDVYENERELFFEDKSNDVI
                     TDDVFRRLSSCHNVLFTGHQAFLTEEALGNISEVTLSNIREVGQTGDCGNAVRADG"
     gene            complement(10702..11778)
                     /gene="prfA"
                     /locus_tag="ACFOCA_000320"
     CDS             complement(10702..11778)
                     /gene="prfA"
                     /locus_tag="ACFOCA_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFC6987094.1"
                     /translation="MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAE
                     LTPVVEVFQNYRLAQSDLADAEEMLSDPEMKDFAAEEIEAAKAKIGELDTELQKLLLP
                     KDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYK
                     EVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELN
                     PADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAA
                     RLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMD
                     GDLAEITDALIAEHQAELLAAMGD"
     gene            complement(11868..12638)
                     /locus_tag="ACFOCA_000321"
     CDS             complement(11868..12638)
                     /locus_tag="ACFOCA_000321"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6987095.1"
                     /translation="MRLTDTHCHLADSVLRGNLAQVLAEARQAGVWRFIVPATRPQDW
                     QSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLETMLARYPQAWVGEIGLDFY
                     DKTQTPPQRERQIQVFVRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQGGIVHA
                     FSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLKKEI
                     NTPANILRIAEIAAQIRGTGAAEIAAITERNADSLLRP"
     gene            complement(12641..13633)
                     /locus_tag="ACFOCA_000322"
     CDS             complement(12641..13633)
                     /locus_tag="ACFOCA_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HFC6987096.1"
                     /translation="MKQKIFVLYTGGTIGMTQSSEGLRPDTALVGQALAPFSNGMDFD
                     WHVCGTLIDSSAVQLQNWCAWLDIIAAALPQYDGVLVLHGTDTLAYTANLFALALQGL
                     DKPIVLTGSQWPYNAVGSDAPRNLATAVAAFPLGLKQTLIAFDGKLYPAVGSSKVSTE
                     TAAGFDNPHFGALAEWDETQGWHNVRIPNQDAADVSDGLKIRYPDPQAKIAVRTLIPG
                     FAVQELADGLGQLPAQALILQSYGHGNTPADEGFIRAVQDFTQQGKLLLNISQVRQGR
                     TAAVYAQGNAFRNSGIINGGKCNLETATALMTLAVSEGWGADEVKHELQRLGLV"
     gene            complement(13700..14383)
                     /locus_tag="ACFOCA_000323"
     CDS             complement(13700..14383)
                     /locus_tag="ACFOCA_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6987097.1"
                     /translation="MFALLEAFFVEYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISG
                     MGYTNPHIMFAVGMLGVLVGDGIMFAAGRIWGQKILKFKPIARIMTPKRYAQVQEKFD
                     KYGNWVLFVARFLPGLRTAVFVTAGISRKVSYLRFLIMDGLAALISVPVWIYLGEYGA
                     HNIDWLMAKMHSLQSGIFIALGVLAAALAWFWWRKRRHYQLYRAQLSEKRAKRKAEKA
                     AKKAAQKQQ"
     gene            complement(14573..15907)
                     /gene="glmM"
                     /locus_tag="ACFOCA_000324"
     CDS             complement(14573..15907)
                     /gene="glmM"
                     /locus_tag="ACFOCA_000324"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFC6987098.1"
                     /translation="MAKKYFGTDGVRGEVGQFPITPDFVLKLGYAAGQVLVQHDTDQK
                     PTVLIGKDTRISGYMLEAALVAGFTAAGVNVVQTGPLPTPGVAYLTRALRLSAGVMIS
                     ASHNAYSDNGIKFFAEGGVKLSDEVELEIEAKIDGEMKTQPSARLGRARRISGADDRY
                     IEFCKSTFPSHSDLRGLKLVVDTANGAGYGVAPKVFHELGAQVVSIGNEPNGYNINEK
                     CGATYTKTLQAAVLQHEADYGIALDGDGDRLMMVDKNGQVYDGDSLIYVIAKARAREG
                     INIGGVVGTVMTNMAMEIALKEQGVDFCRAKVGDRYVLEQLNQRGWLIGGEASGHILC
                     MDKHNTGDGIISALQVLAALQTLNQDLATVCADWQPYPQTMINVRIQKGQQWQEASKD
                     VLAEVEKELEGKGRVVLRASGTEPVVRVMVEARQADWAREGAERIAAAIGGI"
     gene            complement(16037..16894)
                     /gene="folP"
                     /locus_tag="ACFOCA_000325"
     CDS             complement(16037..16894)
                     /gene="folP"
                     /locus_tag="ACFOCA_000325"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFC6987099.1"
                     /translation="MARHVWQAGRFEIGLDKPKIMGIVNLTPDSFSDGGVYSQNAQTA
                     LAHAEQLLKEGADILDIGGESTRSGADYVSPEEEWARVEPVLAEVAGWGVPISLDTRR
                     TVIMEKALALGGIDIINDVAALNDEGAVELLARQADTGICLMHMQGLPKTMQINPKYQ
                     DVVGEVARYLKARSAECIAAGIAPQRIILDPGFGSGFGKPLQHNIALMRHLPELMAET
                     GFPLLIGVSRKSTIGELTGEANAAERVHGSVAAALASVARGAQIVRVHDVKATADALK
                     VWEALGINL"
     gene            complement(17034..17927)
                     /locus_tag="ACFOCA_000326"
     CDS             complement(17034..17927)
                     /locus_tag="ACFOCA_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HFC6987100.1"
                     /translation="MIIVMSRRAAEADIAGVVAFIRSRGLREHISHGDERTVIGAIGD
                     DRVLSVREVQTLPEVEKAVRILDTWKTVSRENRAEDSRVAAKGVAFGGGETVRIAAEP
                     SVWRNADAVFLDPFFTSANLYDTSSADERRGRCRRLAEQTASAHGAGKPVLVRVRNVR
                     HVEAALNAGADILYLGGGLMSDLAVLNEAGNLNIPLVLCKDKHHSAEDWLNAAEYVVS
                     RGNRHLILGESGVLNHTKGHPYRLDVESIVKVRQISHLPVIANITGLWNRDMPQEILY
                     GLAKAAGACGIVGTCFEKSGG"
     gene            18018..20132
                     /locus_tag="ACFOCA_000327"
     CDS             18018..20132
                     /locus_tag="ACFOCA_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HFC6987101.1"
                     /translation="MDLLSVFHKYRLKYAVAVLTILLLAAVGLHASVYRTFTPENIRS
                     RLQQSIAHTHRKISFDADIQRRLLPRPTVILKNLTITEPGGDQTAVSVQETKIGLSWK
                     NLWSDQIQIEKWVVSSAELALTRDGKGVWNIQDLIDSQKRQASVNRIIVENSTVRLNF
                     LQEQLILKEINLNLQSPDSSGQPFESSGILVWGKLSVPWKSRGLFLSDGIGTPKISPF
                     HFEASTSLDGHGITISTTGSPSVRFNAGGADAAGLGLRADTSFRNLHLTAQIPTLALR
                     NNSIKIETVNGAFTAGGEYAQWDGSFKLDKANLHSGIANIGNAEISGSFKTPRHQTNF
                     SLNSPLVWTENKGLDAPRLYVSTLQDTVNRLPQPRFISRLDGSLSVPNLQNWNAELNG
                     TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSGDI
                     EAHLKIGKVQLPGLQLDDMETYLHADKGHIALSRFKSGLYGGHTEGGISIANTRPATY
                     RLQQNASNIQIQPLLQDLFGFHSFSGNGDAVIDLTAGGETRKELIRSLQGSLSLNISN
                     GAWHGIDMDNILKNGISGKTADNAAPSTPFHRFTLNSEISDGISRHIDTELFSDSLYV
                     TSNGYTNLDTQELSEDVLIRNAVHPKNKPIPLKITGTVDKPSITVDYGRLTGGINSRK
                     EKQKILEDTLLEQWQWLKPKEP"
     gene            complement(20197..21675)
                     /gene="ubiD"
                     /locus_tag="ACFOCA_000328"
     CDS             complement(20197..21675)
                     /gene="ubiD"
                     /locus_tag="ACFOCA_000328"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HFC6987102.1"
                     /translation="MKYKDLRDFIAMLEQQGKLKRIAHPVSPHLEMTEIADRVLRAEG
                     PALLFENPVKPDGTRYGYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEP
                     PKGIKDAFSKLPLLKDIWSMAPNVVKNAPCQEIVWEGENVDLYKLPIQHCWPEDVAPL
                     VTWGLTVTRGPHKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEFRKLNPDTPYP
                     VAVVLGCDPATILGAVTPVPDTLSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLE
                     GVIHPNETALEGPYGDHTGYYNEQDHFPVFTVERITMRENPIYHSTYTGKPPDEPAVL
                     GVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLR
                     QFMYTKFIIVVDDDVNVRDWKEVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLG
                     GKMGLDATNKWPGETDREWGRVIKKDPAVTAKIDGIWEELGL"
     gene            complement(21695..22210)
                     /locus_tag="ACFOCA_000329"
     CDS             complement(21695..22210)
                     /locus_tag="ACFOCA_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2199 domain-containing protein"
                     /protein_id="HFC6987103.1"
                     /translation="MYTCTSCGEKHEDMPAIGFTAPYPYNQLSEEERIAYQAECGGDF
                     CIIRYPDQTDRFIRAVLLIPIIGHEETLEYGVWVSVSEKSFNDYQSHFHDNPENVVYF
                     GMICNRLPPYETDTFGLHCNVVTQPDGQRPLLQLHQGSEHPLVRDFYHGIEYAEAQAR
                     IGAVSESDCSG"
     gene            complement(22217..22651)
                     /locus_tag="ACFOCA_000330"
     CDS             complement(22217..22651)
                     /locus_tag="ACFOCA_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987104.1"
                     /translation="MCGLWLLRALTAKLPQQRYAALFITLFFAAVLVFGRHDSMYWYP
                     VLVNLMMLAVFGGSLFAGQTVIEKLARLQQPDLPEKAVRYTRRVTQVWCVFFIANGTL
                     AALLARLGRYDWWAVYTGVIAYVLMGMPFAGEWLYRKLVLKV"
     gene            complement(22932..23015)
                     /locus_tag="ACFOCA_000331"
                     /pseudo
     CDS             complement(22932..23015)
                     /locus_tag="ACFOCA_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222119.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(23018..23518)
                     /locus_tag="ACFOCA_000332"
                     /pseudo
     CDS             complement(23018..23518)
                     /locus_tag="ACFOCA_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714696.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
     gene            23558..>23650
                     /locus_tag="ACFOCA_000333"
     CDS             23558..>23650
                     /locus_tag="ACFOCA_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6987105.1"
                     /translation="MLPSKYEDNTLQIKEKSTERTAPFFVLEVTA"
BASE COUNT         5353 a         6760 c         6185 g         5352 t
ORIGIN      
        1 tcccataaaa aaacggagca gatacctgcc ccgtttttat ttaatccgaa attttaatct
       61 aaatttagaa ttttgcaccg gattggtttg ccatatagtc aacagccgct ttgacttcgt
      121 catcgctcaa accggcattg ccgcctttgg ccggcatcgc gttaaagcct tcaagggcgt
      181 gtttgtgcaa ggtttctttg ccttttttga tacgcggtgc ccaatcgtct tttttgccta
      241 tgccgggaat accgggaatc gaaccgccgt ggcacacctg acaggttgct tcgaagactt
      301 ttttaccgtc aacgccgacc gcaggggctg ccgcaccctt gtcttctgcc ttcgcttctg
      361 ccggagctgc actatcggca ggagcagaag ctgttcctga agcggcattg tcggcaggcg
      421 cagcctcatc aggattcggg aaagaaccgc cgcttttgtt cgccatgtaa gtaatcgccc
      481 gtttgagttc ctgatcggtc aggtctgccg caccgccttt ggcaggcatg gcgttaaagc
      541 cgttcagcgc gtgttggaac aaggtatcga agccttgcgc gatacgcggt gcccaatcgc
      601 cgttgtgttc cagtttcgga gcgttcggca cattgctgtc cgccgcgtgg cattggatac
      661 agattttgcc gaaaatctgt tcgccttggc gttcgccgac ggggatgccg tcgcccatcg
      721 tcaattgtcc gacaggctgg atacgggtct gcgttgctgc ttccgtagtg gcatcgacat
      781 cgccgaacga gccgctgccc gccagcttaa tcaggaaata aaggactgca ataacaataa
      841 cgataccgct cacaagggta aacagtgcag agccttgggc tttgttgtcg cggagttgtt
      901 tcatttggta ggcctcgccg tcaggttagg ttgtgctgta aattatagtt tggtgtgtta
      961 aacgcagtta acaatatttt gctggattat actgaattca cagggtcttt ccaatcgcta
     1021 tcattgaaaa tatgaaaaaa tttgccaacg gtatctgtat aaaacaaata atcctttgaa
     1081 aataatggtt tatcctcaag aaaactctcc ttatgccgcc atacgccgcc tgccggcgca
     1141 agataacctt tgccaatttg cagaatttac gttaacctta cgttttacgc acccatagct
     1201 cagttggaag agtgtcagtt tccgaagctg gaggtcacag gttcgatccc tgttgggtgc
     1261 gccaattata aagagaccgt ctgaaagata aatatttttc agacggtctt ttgacttact
     1321 tcaaactctt atttcaagac ttccgcaaat gcgcgggcaa catagtcggt attcgacgta
     1381 ttcagtccgg cgacgcacat cctgccggaa tccagcaggt aaacggcaaa ttcgtcgcgc
     1441 agcctgcgga cttgttccac gctcaatcct gtgtagccga acatgccgcg ctgtttgatg
     1501 aaataagtga aatcgcgatc ggggatttgc gcagttaaga catcataaag tttctgccgc
     1561 atcgcacgga tgcggtcgcg catcatataa acctcgtttt gccacaaggc gtaaagttcg
     1621 gggctgttca tcacgtcggc ggcgatatac gcgccgtgcg cgggcgggct ggagtagatg
     1681 cggcggacgg tgaatttgag ctgtccgaac accaaatccg cttcttcctt attcgggcaa
     1741 accacgctca ggccgccgac gcgctcgccg tagagcgaca ggttttttga gaaggaattg
     1801 ctgacgaaca agggcaattc catttccacc gctttgcgga cggcgtaggc atcgctgtcc
     1861 aaatcgccgc cgaagccttg gtaggcgatg tccataaacg gaatcagttt gcgcgttttg
     1921 atgatgtgca acacttcgtc ccattgttgt tccgacatat ccacgccggt cgggttgtgg
     1981 cagcagggat ggaggatcag gacgctgttt tcgggcaggg tgttgaaaaa cgcggtcatt
     2041 tcgtcgaatt tcacgccgac ggcagcaggg tcgtaatatg ggtaagtgcc gacctcgaaa
     2101 cctgcgcttt caaaaatgcc gcgatggttg tcccaagtcg ggtcgctgac gtaggcgcac
     2161 gcttcgggaa accagcggtg cagaaagtcc gccccgactt tgagcgcgcc tgagccgccc
     2221 aaggtttgta cggtaacaat acgtccttgc gcgagcgcgg ggttgtcttt gccgaacaac
     2281 aaatgctgca ccgcgctgcg gtaagtgtct aagccttcca tcggcaggta gggcgacggc
     2341 acaggagtgg cggcgcgggc ggtttcggcg cggctcacgg attccaacac gggcattttg
     2401 ccttcgtcgt cgaaataaat gcctatgctc aaattgactt tttcggggcg cgggtcgttt
     2461 ttgaaggttt cgaccaaact caaaatcgga tcgccgggat agtattcgat gtgtcggtac
     2521 atagtcctta cctcttgctt tttccaagga ttttcttttt caacagcaca ccgctttcaa
     2581 tatggtgcgt aaacggaaat tgatcgaaca gggcggcacg ttcaaccgta tgggtttccg
     2641 ccaaggtgtc caaattggta cgcagcgttt cgggattgca ggaaatgtag atgatgttgt
     2701 caaactgcga caccagcttc aaagtttcct catcgatacc ggcacgcggc ggatcgacga
     2761 aaatagtgga aaatgcgtaa tccgtcaaag caataccgcc atccttaagg cgtttaaact
     2821 cacgttttcc ggtataggct tcggtaaatt cttcagcaga cagacgggcg attttgatgt
     2881 tgccgatgcg gttggcttcg atattccatt gcgccgcgct gacggaggtt ttggagattt
     2941 cggttgccaa aacacgttca aacttttcag ataaaggaag cgtaaagttg ccgtttccgc
     3001 aatacagttc gagcaaatcc ccatccaatc cttctgctgc accgcaggcc cattcaagca
     3061 ttttctgaca cacggcggca ttcggttggg taaaactgcc ttcaatttgc cgataacgga
     3121 aatcccggtt gccgaccttc aaagtttccg ttacatagtc ctgttttaag actattttct
     3181 gtcccctgct ccgcccgatg acggaaatat ccaactgttg ctgtaacgct tgcgccgcct
     3241 gcatccactc attatcaagc cttttgtggt aaatcatggt aaccagcatt tccccgctga
     3301 gcgtagacaa aaattcgacg gcataccaac ggtttctcag ttcggcagat tgggcggcaa
     3361 cggcaatcaa ttctggcatc aggcggttga cggcttcgga agccgcttca aaacggtcgc
     3421 aacggatcag gcttgccccg ccagcctttt gtcctttttc aaacatggca taaaacattt
     3481 caccgccttc gtgccaaata cggaactcgg cacgcatacg gtaatgtttg tccggagatt
     3541 cgtacacttc ccactcagga acatccaaac ctgcaaaaag ggttttaagg tggtcttttt
     3601 tatcttgaag ctgctgcgtg tagtcgctca tatcgctatc ctgaaaaatc agaccggatt
     3661 ataagccgat tcactgcaaa acacgcaacc cctttaccgg catataaccc gttttcctcc
     3721 aacttttatg ctaaaatccg ccgtctccaa cataccgccg acagaaggaa aatatggcag
     3781 gcaacacttt cggacaactc ttcaccgtga ccacgttcgg cgaaagccac ggcgcaggtt
     3841 tgggctgcat catcgacggc tgcccgcccg gcttggaatt aagcgaagcg gatatccaat
     3901 ttgacctcga ccgacgcaaa cccggcacca gccgccacgt tacccaacgc cgcgaaaccg
     3961 accaagtaga aatcctctcc ggcgtattca aaggcaaaac caccggcacg cccatcgccc
     4021 tcttaatccg caataccgac cagcgcagca aagactacgg caacatcgcc caaagtttcc
     4081 gccccggcca tgccgactat acctattggc acaaatacgg cacgcgcgac taccgcggcg
     4141 gcggcaggag ctccgcccgt gaaaccgccg cccgcgttgc tgccggagcc gttgccaaaa
     4201 aatggttgaa agaaaaattc ggcacggaaa tcaccgccta cgttacccaa gtcggcgaaa
     4261 aagaaatccg gtttgaaggc tgcgagcaca tttcccaaaa tccttttttc gccgccaacc
     4321 atagccaaat cgccgagctg gaaaactata tggacagcgt gcgcaaatcc ttggattccg
     4381 tcggcgcgaa actgcatatc gaagcgacca acgtccccgt cggtttgggt gaacccgttt
     4441 tcgaccgcct cgatgccgaa attgcctacg cgatgatggg catcaacgcc gtcaaaggcg
     4501 tggaaatcgg cgcaggcttc ggcagcgttg tccaacgcgg cagcgaacac ggcgacgaac
     4561 tgaccccgca aggcttcctg tccaaccacg ccggcggcat cctcggcggc atcagcaccg
     4621 gacaaaacat ctgcgtcaat atcgccatca aacccaccag ctccattgcc acaccgcgcc
     4681 gcagtatcga catcaacggc gaccccgtcg aactcgccac ccacggcagg cacgacccct
     4741 gcgtcggact gcgcgccgcc cccattgccg aagccatgct cgcgttagtc ctcatcgacc
     4801 acgctctgcg ccatcgcgcg caaaatgccg acgttcaggt taatacgccc gacattaccc
     4861 tttcaaacaa ataaaaattt agccaaaaca cagactttat aatagaatac caagcattgc
     4921 cgtgcagcct tgacgcacgg gtttgtttag aggaatgcaa ctgaaatgat acaagaaacc
     4981 gctttgggcg cagcactgaa atctgcggtc caaaccatga gcaaaaagaa acagacagaa
     5041 atgattgccg accatatcta cggcaaatac gatgtattca aacgatttaa accgttggca
     5101 ctcggtatcg accaagactt gattaccgcg ctgccccaat acgatcctac acttattgca
     5161 cgcgtcctcg ccaaccactg tcgccgtccg cgctatctga aagccttggc gcgcggcggc
     5221 aaacgtttcg atttgaacaa ccgtttcaaa ggcgaagtta cccccgaaga acaggcaatc
     5281 gcacaaaacc atcctttcgt gcagcaggct ttgcaacagc agtccgccca agctgccgcc
     5341 gaaacaccgt ctgttgaagc cgaagcagcc gaatcttccg cagcagaata aatccccaaa
     5401 cgaaatgccg tctgaaagcc gatttggttt cagacggcat tttttcgtat gcggcaatca
     5461 cggttcaaat atcgagttcc gccgtatcgc cttcgcgttc catccaagcg cggcgggcgg
     5521 cggcttcgcc tttgcccatc agtttgacga agatgtcgcg tgtttcgtca tccgctcctt
     5581 cggggatttg cacctgcaac aggcggcggg tgtcggggtg catggtggtg tctttgagct
     5641 ggtcggggtt catctcgccc aatcctttga aacggctgat ggaataggcg gtttctttga
     5701 cgccttcttt ttgcagccgc tctaaaatgc tgtcgagttc gttttggtcg agggcataga
     5761 atttgcgggc aggtttgctt ttgccttgtg cgttgacatc gacgcggaac agcggcggct
     5821 gggcgacgta gatgtgtcca tcggcaacca gtttcgggaa gtggcggtag aacagggtca
     5881 gcagcaaaac ttgaatatgc gagccgtcca cgtcggcatc ggacaggatg gcgattttgc
     5941 cgtaacgcag gccgcttaaa tcgggatggt cgttgatgcc gtgcggatcg acgccgatgg
     6001 caactgaaat gtcgtggatt tcggcgttgc cgaagagctg gtcggggtgg acttcaaagc
     6061 tgttgagcac tttgccgcgc aggggcagga tggcttgggt ggctttgtcg cgggcgagtt
     6121 tggcggagcc gccggcggaa tcgccttcga cgaggaagag ttcgttttcg cggatgtctt
     6181 cgctttcgca gtcggtcagc ttaccgggca ggacggcgac gccgctgcct tttttctttt
     6241 caatcttttt aaccgaacgc atccgcgcct gtgcctgacg gatggcgagt tcggcgattt
     6301 ttttgccgaa gtccacgttt tggttcagcc acaattccaa agggtcgccc gatacggtag
     6361 caacgagttt cagcgcgtcg cggttggtca gtttgtcttt ggtctgacct tggaactgcg
     6421 ggtcgaggac acgggcagag aggacaaagg cggttttgcc gaacacgtcg tcgctttgca
     6481 ctttcacgcc gcgtggtaaa aggttgtgca gattgatgaa gttgctgacg gcgttgaaca
     6541 cggcttgttt caagcccgct tcgtgcgtgc cgcccagcgg ggtggggatg aggttgacgt
     6601 agctttcgtt ggcgcacgag ccttcttcca gccaggtcag ggcaaacgcg gcgccttcgc
     6661 cgatgctgaa atcgccgttg tggccgtctg aaatgtagtt ttcgcaagag aagataggca
     6721 cggcttcctg cgcgtcggca atcaggtcgg tcagatagct tttcagaccg tcggggtaat
     6781 gccaggtttg ggtgtgcgct tcgtcttcgc ctttgaccgg acgggtcagg gaaacgcgca
     6841 cgcccggcag cagcacggct ttggcgcgca gcaggcgttc gagttcgggg atgctgtaat
     6901 tcgggctttc aaaatatttg ccgtccggcc agacgcgcac ttcggtgccg ctgtctttga
     6961 cggcgcattt gcccacttgt gccaacggtt cgaccacgtc gccgccggca aacacgatgc
     7021 ggtggatttt gccttcgcgt ttgaccgtta cctcaaggcg ggtggaaagg gcgttggtca
     7081 cggatacgcc cacgccgtgc aggccgcctg aaaaggcata cgcgctgccg ccgtcttttt
     7141 tgttgaactt gccgcccgcg tgcagacggg tgaacacgag ttcgactacg ggtacgcctt
     7201 cttcagggtg cagaccgacg ggaataccgc ggccgttgtc gcgtacggaa agcgaaccgt
     7261 cttcatgaat ttgcacgtcg attgccgtag cgaaaccgcc caacgcctcg tccgccgcgt
     7321 tgtcgatgac ttcttggcag atatgggtcg ggctgtcggt gcgggtgtac ataccgggac
     7381 gttctttgac cggttccaaa cctttgagga cggtgatgct ggattcgctg tattggttgt
     7441 ttttagccat aggaataatc tgaaagtaag aaaaacaacg ctttcagacg gcctgaaagc
     7501 gttgcgttcc gttgttttac cggttgccgg aaagttggcg ggcggcaaag tcttcataac
     7561 tttccatacc gcgcaggaag cgggaagaaa gttctttcaa tgcccccaaa taaacgtcgc
     7621 gtttgaaatc aatcacttcg tcaacgggcg cccaatattg gtgccaacgc cagccgtcaa
     7681 attcggggtg gcgggtggcg cgcaggttga catcgcaatc ccggccggtc aggcgcagga
     7741 gataccaaat ctgcttctgc ccgcgataag agccgcgcca ttcgcggcgt acccagttgt
     7801 tcggcacgtc gtaacgcagc cagtcgcgcg tccgcccgac gattttgacg tgttgcgaca
     7861 gaagtccgac ttcttcgtaa agctcgcggt acatcgcggt ttcggggctt tcgcccggct
     7921 tgatgccgcc ttgcggaaac tgccaagaat gttcgcgcac gcgcttaccc caaaagactt
     7981 cgtcgcggtt gttggttaag atgataccga cattggggcg atagccttcc ctgtccaaca
     8041 cggtgtcgcc ctccgttaaa ttcaatcttg ggattttccc acaaatcgaa cggttttgac
     8101 aaatcagacg gtatggttca agcatgtcga aacacagacg gactcgggaa aatatcttaa
     8161 atttggttta caataatgtg tttcaaatta ttcgggaatc agaccatgtt agacatccaa
     8221 ttgctccgca gcaacaccgc cgccgttgcc gaacggcttg cacggcgcgg ttatgacttt
     8281 gataccgcac gttttgacgc actggaagaa cgacgcaagt ccgttcaggt gaaaaccgaa
     8341 gaattacaag cctcgcgtaa cagcatttcc aagcaaatcg gcgcactgaa aggtcagggc
     8401 aaacacgaag aggcacaggc ggccatggat caagtcgccc aaatcaaaac cgatttggaa
     8461 caggcagccg ccgatttgga agccgtgcaa aaggaactgg acgcatggct gttgagcatt
     8521 ccgaacctgc cgcatgagga cgtgcctttc ggtaaggatg aaaccgaaaa cgtcgaagtc
     8581 cgcaaagtcg gcaccccgcg cgaatttgac tttgaaatca aagaccatgt cgatttgggc
     8641 gaacctttgg gtttggattt cgaaggtggc gcgaaacttt ccggcgcacg atttaccgtg
     8701 atgcgcggac aaatcgcccg tctgcaccgc gccttggcac agttcatgct ggatacgcac
     8761 acgctgcaac acggctacac cgagcattac acgccttata tcgttgacga tacgacgctg
     8821 caaggtacgg gccaactacc aaaatttgcg gaagatctgt tccacgttac ccgtggcggc
     8881 gacgaaacca aaaccaccca atacctgatt ccgacagccg aagttaccct gaccaatacc
     8941 gttgccgaca gcattatccc gtccgaacaa ctgccgctga agctgaccgc gcattcgccc
     9001 tgtttccgca gcgaggcggg ttcgtacggc aaagacacgc gcggtctgat tcgccagcac
     9061 cagttcgaca aagtagaaat ggtacaaatc gttcatcccg aaaaatcata cgaagcactg
     9121 gaagaaatgg tcggccatgc cgaaaacatc ctgaaggctt tggaactgcc ctaccgcgtg
     9181 attaccctgt gtaccggcga catgggcttc ggcgcaacca aaacgtatga cttggaagtt
     9241 tgggttcccg cgcaaaatac ctaccgcgaa atctcaagct gctccaactg cgaagatttc
     9301 caagcccgcc gcatgaaggc gcgtttcaaa gacgaaaacg gcaaaaaccg cttggtacat
     9361 actttgaacg gctccggctt ggctgtcggc agaacgctgg tcgccgtatt ggaaaaccat
     9421 caaaacgccg acggcagcat caacatccct gccgcactgc aaccgtatat gggcggcgtt
     9481 gccaagttgg aagtgaaata agtttgcaag ctgcctgaac gtcaaatgcc gtctgaaacc
     9541 tggttcagac ggcatttcct ttaaactttt aaaacacgtc agccgtcggc acgaaccgca
     9601 ttgccgcaat cgccggtctg tccgacctcg cggatattgg acagcgtaac ttccgaaata
     9661 ttacccaacg cctcttccgt caaaaacgcc tgatgaccgg taaacagcac gttatggcag
     9721 gacgacaacc ggcggaacac gtcgtcggta atcacatcgt tggatttgtc ttcaaaaaac
     9781 agctcgcgct cgttctcgta cacatccatg cccaatgcgc cgattttccg gcgtttcaac
     9841 gcctcaatcg cggcggcact gtcaatcagc ccgccccggc tggtgttgat aatcatcacg
     9901 ccgtctttca ttttgtcgaa cgccgcttcg ttcagcatat agtggttttc cggcgtggcg
     9961 gggcaatgca gcgtgatgat gtccgactgg gcatacagct cgtccaaatc cacatacctg
    10021 ccgccgattt tttccgcttc ggggttgcaa aacggatcgt gagccagcag gttcatgccg
    10081 aaacccttta aaatccgcat ggttgcaata ccgattttcc ccgtgccgat aacgcccgcc
    10141 gttttgccgt acatattgaa accggtcaga ccttccagcg aaaaattcgc atcgcgggta
    10201 cgctgatagg ctttgtggat acggcggttc aaagtcagca tcagaccgac cgtatgttcc
    10261 gcaaccgatt cgggcgaata ggcaggcacg cgcacgactt tcaagcccaa ctcttcagcc
    10321 gcctttaaat ccacattatt gaagccggca caacgcaacg ccacagtttt cacgccaatt
    10381 tgcgccaatt tttccaacac gggccggctg ccgtcgtcgt ttacaaaaat acaaaccgct
    10441 tccgcgcctt ccgccatttt cgccgttttc gcatccagca taaaatcaaa aaactccagc
    10501 tcgaagccga aatgccggtt ggcgcgggta aaatgttcgc ggtcatagct tttcgtaccg
    10561 taaatcgcaa tcttcatcaa tatgtccagt tgtcgcctat ggttgagaaa cggcataata
    10621 cactgaattc aaacaaatca gtagaatatg gcagattaaa attgattgca tgcacggcat
    10681 ttccatttca aaacacaaaa ctcaatcgcc cattgccgcc aaaagctccg cctgatgttc
    10741 ggcaatcagg gcatcggtga tttctgccaa atcgccgtcc atcacaaaat ccagcttgtg
    10801 cagggtgagg ttgatgcggt ggtctgttac cctgccttgg ggatagttgt aggtgcggat
    10861 gcgttcgctg cggtcgccgc tgccgatgag ggatttgcgt tcggcggctt ctttggcttg
    10921 ggcttcgcgt ttttgcgcgt cgttcaggcg ggcggcgagg actttcatcg cctgcgcttt
    10981 gttggcgtgt tggctgcgtc cgtcttggca ttcgaccacc atgcctgtgg gcaggtgggt
    11041 gatgcggacg gcggaatcgg ttttattgat gtgctgcccg cccgcgccgg atgcgcgaaa
    11101 ggtgtcgatg cgaaggtcgg ctgggttcag ttcgatgtct tccagttcgt ccgcttcggg
    11161 catgacggca acggtgcagg cggaggtgtg gatgcggcct tggctttcgg tggcggggac
    11221 gcgctgcacg cggtgtccgc ccgattcaaa tttcaaacgg ctgtacgccc cgagtccgac
    11281 aatacgggcg atgacttctt tatagccgcc caattcgctt tcgttggcgg acacgatttc
    11341 aacctgccaa cggttgcgct cggcgtagcg gctgtacata cgcagcaaat cgccggcaaa
    11401 cagcgcggct tcgtcgccgc ccgttccggc gcgtatttcg atgaagatgt ttttgtcgtc
    11461 gtcggcatct ttgggcagca gcagtttttg cagttcggta tcgagttcgc cgattttggc
    11521 tttggccgct tcgatttctt cggcggcaaa atctttcatt tcggggtcgg acagcatttc
    11581 ttcggcatct gccaagtcgc tttgggcaag ccgatagttt tggaatactt cgacgacggg
    11641 ggtcagttcg gcgtgttcgc gcgtgagctt gcggtagttg tccatatcgg atgtggcttc
    11701 gggttgccct aaaaggtggg taacttcttc caaccggtcg ccgagttgtt gcagtttttc
    11761 taagatagac ggcttcataa ttcttccata acaaacgccg cctgaatttc agacggcatc
    11821 aaaccgcggt cattataata tattttctga atattcaaaa agataatcta gggacggagc
    11881 aggctgtcgg cattgcgttc cgttatcgcg gcgatttccg ccgcgccggt accgcgtatc
    11941 tgcgcggcaa tttcggcaat ccgaagaatg ttggcaggcg tattaatctc ttttttcagc
    12001 ataaacgggc tgtcggtttc caatacgaaa tccccgtcgt tcaaggcttt aagcgtatcg
    12061 cgcactttac gcgcgttcgg attgagcaac aacgaaccga tgccgatttt gaaacccagt
    12121 ttcgtcaaca cgcgcgcttc ttccgcgctg cctgagaagg cgtgaacgat gccgccttgg
    12181 gcaaagcctg tctgtttgac ggcggcggcg atgtcggcgg tggctttgag attatggata
    12241 atcacgcggc ggcgcagggt ttgcgcgatg gcaagctggc ggacgaaaac ttggatttgc
    12301 cgttcgcgct gcggcggcgt ttgggttttg tcgtaaaaat ccaagccgat ttcgccgacc
    12361 catgcctgcg gataacgtgc caacatcgtt tccaggcgga cgcaatcacg ctcggcaatg
    12421 ccgtctgaaa accaaggatg gatgccgagc gcaatacgga tttgaccgtg ttcggacggc
    12481 atttccgaca gttccgccac gctttgccaa tcctgcgggc gcgtcgcggg aacgataaac
    12541 cgccacacac ccgcctgtcg cgcttcggca agcacctgcg ccagattgcc gcgcaaaaca
    12601 gaatcggcaa gatggcaatg tgtgtcggtc agcctcatct tcacaccagc cccaaccgct
    12661 gcaactcgtg tttcacctcg tccgcgcccc atccttcaga aacggcaagc gtcatcaatg
    12721 cggttgcggt ttccaaattg catttgccgc cgttgatgat gcctgagttg cggaacgcgt
    12781 tgccttgcgc gtaaacggca gcggttctgc cttgtcggac ttggctgatg ttgagcagca
    12841 gtttgccttg ctgcgtaaag tcttgcacgg cgcggatgaa accttcgtct gcgggcgtgt
    12901 tgccgtgtcc gtagctttgc aggataaggg cttgggcggg aagctgtccg agtccgtcgg
    12961 caagttcttg gacggcaaag ccggggataa gcgtgcggac ggcgattttt gcctgcgggt
    13021 cgggataacg gattttgagg ccgtctgaaa catctgccgc gtcctgattc gggatgcgga
    13081 cattgtgcca gccctgggtt tcgtcccact ccgccagtgc gccgaaatgc ggattgtcga
    13141 aaccggcggc ggtttcggtg ctgactttgc tgctgccgac ggcgggataa agtttgccgt
    13201 caaaggcaat aagcgtctgc ttcaatccga gtgggaatgc ggcaacggca gtcgccagat
    13261 tgcgcggcgc gtcgctgccc acggcgttgt acggccattg ggaaccggtc aggacgattg
    13321 gcttgtccaa accctgcagc gcgagggcga acagattggc ggtataggcg agcgtgtccg
    13381 taccgtgcag caccaaaacg ccgtcgtact gcggcagcgc ggcggcaatg atgtccagcc
    13441 aagcgcacca gttttgcagt tggacggcgg aagaatcaat cagcgtccca caaacgtgcc
    13501 aatcgaaatc catgccgttt gaaaacggcg cgagtgcctg cccgaccagc gcggtatcgg
    13561 ggcgcaggcc ttcgctgctt tgcgtcatgc cgatggtgcc gccggtataa aggacaaaaa
    13621 ttttctgttt catggctcat cctgaaaatg caaagaccgc ctgaaacgcg aaatgcgtcc
    13681 ggacggtcga aaatctgatt tactgctgct tctgtgccgc ttttttcgct gccttttccg
    13741 ccttgcgttt ggcgcgtttt tcgctcaatt gtgcgcggta aagctgataa tgtcggcgtt
    13801 tgcgccacca gaaccacgcc agcgccgccg ccagcacgcc caatgcgatg aagatgccgg
    13861 attgcaggct gtgcattttc gccatcagcc aatcgatgtt gtgcgcgccg tactcgccca
    13921 agtaaatcca aacgggcacg gaaatcagcg cggcaagccc gtccataatc agaaagcgca
    13981 gatacgatac tttgcggctg atgccggcgg taacgaaaac ggcagtccgc aaacccggca
    14041 ggaaacgagc gacaaacaga acccagttgc cgtatttgtc gaatttttcc tgaacctgtg
    14101 cgtaacgttt cggcgtcatg atgcgcgcaa tcggtttgaa cttgaggatt ttctgccccc
    14161 agatgcgtcc ggcggcgaac atgatgccgt ccccgaccaa tacgccgagc ataccgactg
    14221 caaacataat atgcggattg gtataaccca tacccgaaat cacgccgcct gttaccaagg
    14281 tcaaatcctc gggaatcggc acgccgaaac cgcagatgac caaaacgaaa aacacggccg
    14341 catagccgta ttcgacaaaa aaggcttcca aaagggcaaa catagcggat attccattgt
    14401 cggagataaa aagtcagaac aagccgaaac attttctgcg cgaaacggca ttctatcaaa
    14461 gattatgccg tctgaaagcg gaaaaaaggc agattcgcgc atcctccgca tgttcagacg
    14521 gcatttaaac agaaaaccgg ccggttctaa aaacggtttt gcctgatttt gcctaaatgc
    14581 cgccgatggc ggcggcaatg cgttccgccc cttcgcgcgc ccaatccgcc tgccgcgcct
    14641 ccaccatcac gcgcacgacg ggttcggttc ccgaagcgcg caacacgaca cgccctttgc
    14701 cttcgagttc tttttccact tccgccaaca cgtctttcga agcttcctgc cattgctgac
    14761 ctttttggat gcgcacgtta atcatcgttt gcggatacgg ctgccaatcg gcgcaaacgg
    14821 tggcgaggtc ttggttcagc gtttgcagtg ccgccaaaac ttgcagcgcg gaaataatgc
    14881 cgtcgccggt gttgtgtttg tccatacaca aaatatggcc gctggcttcg ccgccgatga
    14941 gccagccgcg ttggttcagc tgttccaaca catagcggtc gccgactttg gcgcggcaga
    15001 aatccacgcc ctgctctttc agggcgattt ccatcgccat attggtcatg accgtgccga
    15061 ccacgccgcc gatgttgata ccttctcggg cgcgggcttt ggcaatgacg taaatcaggc
    15121 tgtcgccgtc gtaaacctgc ccgtttttat cgaccatcat caggcggtcg ccgtcgccgt
    15181 ctaaggcgat gccgtagtcg gcttcatgct gtaaaacggc ggcctggagt gtcttggtat
    15241 aagtcgcacc gcatttttcg ttgatgttgt agccgttggg ttcgttgccg atgctgacga
    15301 cctgtgcgcc cagttcgtga aacaccttgg gggcgacacc gtaccccgcg ccgttggcgg
    15361 tatcgacaac caacttcaaa ccccgaaggt cggaatggct gggaaaggtg gatttgcaaa
    15421 attcgatata gcggtcgtcc gcaccgctga tgcggcgtgc gcgaccgaga cgggcggacg
    15481 gttgggtttt catttcgccg tcgattttgg cttcgatttc caactcgact tcatcggaaa
    15541 gtttcacgcc gccttcggcg aagaatttga tgccgttgtc ggaataggcg ttgtgcgacg
    15601 cggaaatcat cacgccggcg gacaggcgca acgcgcgggt cagataagcc acgccgggcg
    15661 tgggcagcgg tccggtctgt accacattca cacccgccgc cgtaaaaccg gccaccaaag
    15721 cggcttccag catatagccg gaaatgcgcg tgtctttgcc gatgaggacg gtcggtttct
    15781 ggtcggtgtc gtgctgcacc aaaacctgcc ccgccgcata gccgagtttc aatacgaaat
    15841 cgggcgtaat cggaaattgc cccacttcgc cgcgcacgcc gtccgtgccg aaatattttt
    15901 ttgccatgtg ttgctccgag aatgtgaacc gttgtccgag attatacagt cagtttgtgc
    15961 cttgctgtct gcaccgttga tgccgtctga aaccgccccg tccttttcag acggcatgaa
    16021 gtatgtgaac cgctgtttac agattgatgc ccaacgcttc ccacaccttc aacgcatccg
    16081 ctgtcgcctt cacatcatgc acccgcacga tttgcgcgcc gcgcgctacg gaagccaacg
    16141 ctgccgccac gctgccgtgt acgcgttccg ccgcatttgc ctcgccggtc agctcgccta
    16201 tcgtgctttt gcgcgatacg ccgatgagca gcggaaaacc tgtttccgcc atcaattcgg
    16261 gcaaatgccg catcagcgcg atattgtgtt gcaagggttt gccgaagccg gagccgaagc
    16321 cggggtcgag tatgatgcgt tgcggtgcga tgcctgccgc gatacattcc gctgagcgcg
    16381 ctttcaaata ccgcgctact tcaccgacaa catcttgata tttcggatta atctgcatgg
    16441 ttttgggcaa accctgcatg tgcatcaggc aaatgcccgt gtccgcctga cgcgccagca
    16501 attcgaccgc gccctcgtca ttcaacgccg ccacatcatt aataatatcg atgccgccga
    16561 gtgccaacgc tttttccata atcaccgtgc ggcgcgtgtc caaactgatg ggaacgcccc
    16621 accccgccac ttccgccaaa acaggctcaa cccgcgccca ttcttcttca ggcgaaacat
    16681 aatccgcacc cgaccgcgtc gattcgccgc cgatgtcgag aatgtctgcg ccttctttta
    16741 gaagctgttc ggcatgtgcc aaggctgttt gggcgttttg cgaatacacg ccgccgtcgg
    16801 aaaaagaatc gggtgtgaga ttcacgatgc ccatgatttt cggtttgtcc aaaccgattt
    16861 caaaccgtcc tgcctgccaa acgtgtcgtg ccatctgaac tcctcccaaa ataaaaaaca
    16921 gattatatgc cgtctgaaac cgtcttgtgc gcttcagacg gcaccgctat tcgggcggca
    16981 gacggcatgt tgtccgaatg tctgctccgc ctttgaatct gccggtatgc ctgctatccg
    17041 cccgactttt caaaacaggt tccgacgatt ccgcacgcgc ctgccgcctt tgccaagccg
    17101 tacaggattt cctgcggcat atcgcggttc cataatcccg taatattcgc aatcacgggc
    17161 agatggctga tttggcggac tttcacgatg gattcgacat ccaaacggta gggatggcct
    17221 ttggtatggt tcaatacgcc cgactcgccc agaatcaggt ggcggttgcc gcgcgagacg
    17281 acatattctg cggcattcaa ccaatcttcg gcagaatggt gcttgtcttt acacagcacc
    17341 aagggaatgt tcaggtttcc ggcttcattc aatacggcaa gatcggacat cagcccgccg
    17401 cccaaataca ggatgtccgc ccccgcattc aaagccgctt cgacatggcg gacgttgcgg
    17461 acgcgcacca atacgggttt ccctgcgcca tgcgccgatg cggtctgttc cgccaaccgt
    17521 ctgcaccgtc cccgcctttc atccgcactt gaagtgtcgt ataagtttgc cgaagtgaaa
    17581 aacggatcca gaaacactgc atccgcattg cgccatactg acggttctgc ggcgatacgg
    17641 acggtttccc cgccgccgaa agccacgcct ttggcggcaa cgcggctgtc ttccgcccga
    17701 ttttcccgac tgacggtttt ccatgtatcc aaaatgcgga cggctttctc gacctccggc
    17761 agcgtctgca cctccctgac gctcaaaacc ctatcgtcgc cgattgcgcc gatgacggta
    17821 cgctcgtcgc cgtgagaaat gtgttctcgc agacctctgc tgcggataaa ggcgacaacg
    17881 ccggcaatgt ccgcttcggc ggcacgcctg ctcatgacaa taatcatatt tcctcctgac
    17941 acaagaaacg gcctgcccaa aataggattt ttgcaagccg tgttatactg tggcgtgttt
    18001 tacagattgt tcgggctatg gatttattat cggttttcca caaataccgt ctgaaatatg
    18061 cggtggccgt gctgacgata ctgcttttgg cggcagtcgg gctgcacgct tccgtatatc
    18121 gcaccttcac gcctgaaaac atccgcagcc gcctccaaca aagcattgca cacacacacc
    18181 ggaaaatctc gtttgatgcg gacattcagc gcaggctcct gccccggccg accgtcatcc
    18241 tgaaaaacct gaccattacc gaacccggcg gcgaccagac tgccgtttcc gtccaagaaa
    18301 ccaaaatcgg attgagctgg aaaaacctgt ggtcggatca gatacagatt gaaaaatggg
    18361 tggtttcgag tgcggaactt gccctgacgc gcgacgggaa aggtgtttgg aacatccaag
    18421 acctgatcga cagccaaaaa cgccaagcct cagtcaaccg cattatcgtc gaaaacagca
    18481 ccgtccgcct caatttcctg caggaacagc ttatcctgaa ggaaatcaac ctcaacctgc
    18541 aatcccccga ttcgtcgggg cagccgtttg aaagttcggg catactggtt tggggaaagc
    18601 tgtccgtccc gtggaaaagc agggggctgt tcctttcaga cggcatcggc acgcccaaaa
    18661 tctcaccgtt ccattttgaa gcttccactt cgctggacgg acacggcatt accatttcca
    18721 ccaccggcag cccttctgtc cgcttcaacg ccggcggagc ggatgccgcc ggcctcggcc
    18781 tgcgtgcaga cacttccttc cgcaacctcc acctgaccgc ccaaatccct acgctggcac
    18841 tcaggaacaa cagcattaaa attgaaaccg tcaacggcgc atttaccgcc ggcggcgaat
    18901 atgcccaatg ggacggttcg ttcaaactcg acaaagccaa cctgcactcc ggcatcgcca
    18961 acatcggcaa cgccgaaatc tccggcagct tcaaaacacc gcgccaccag accaacttct
    19021 ccctcaattc gccgctcgta tggacggaaa acaaagggct ggacgcgccg cgcctgtatg
    19081 tatcgaccct tcaggatacc gtcaaccgcc tgccgcaacc ccgtttcatc agccggctcg
    19141 acggttcgct gtccgtaccg aatctgcaaa attggaatgc cgaattaaac ggcacattcg
    19201 accgccaaac cgttgccgcg aaattcagat acacacatga agacgcaccg catctggaag
    19261 ccgccgtcgc actgcaaaaa ttgaacctga ccccctatct tgacgacgtg cggcaacaaa
    19321 acggcaaaat atttcccgac accctcgcca agctgtccgg cgacatcgag gcgcacctga
    19381 aaatcggaaa agtccaactt cccggcctgc aactggacga tatggaaacc tacctccacg
    19441 ccgacaaagg ccatatcgcg ctcagccgtt tcaagtcagg gctttacggc ggccataccg
    19501 aaggcggcat cagcatcgcc aacacccgtc ccgccactta ccgcctgcaa cagaatgcaa
    19561 gcaacatcca aatccaaccg ctgctgcaag acctgttcgg cttccacagc ttcagcggca
    19621 acggcgacgc ggtcatcgac ctgaccgcgg gcggcgaaac ccgaaaagag cttatccgct
    19681 cgcttcaagg cagcctgtcg ctgaatattt ccaatggcgc atggcacggt atcgacatgg
    19741 acaatatcct gaaaaacggc atttcgggca aaactgccga caatgccgca cccagcacac
    19801 ccttccaccg attcacgctc aacagcgaaa tttcagacgg catcagccgc cacatcgata
    19861 ccgaactctt ctccgacagc ctctatgtta ccagcaacgg ctataccaat ctggatacgc
    19921 aggaattgtc tgaagatgtc cttatccgca acgccgtcca tccgaaaaac aaaccgattc
    19981 ccctgaaaat caccggtacg gtggacaagc cgtccattac cgtcgattac ggcaggctga
    20041 ccggcggcat caattcgcgc aaagagaaac agaaaatcct cgaagacacc ctgctggaac
    20101 aatggcagtg gctcaaacct aaagaaccgt aaacatcctg cgtacaaaaa tgccgtctga
    20161 aacacccccg cgcttcagac ggcatgaccg taaaacctac aaccccaatt cctcccaaat
    20221 cccatcaatc ttagccgtaa ccgcagggtc ttttttgatg acgcgtcccc attcgcggtc
    20281 ggtttcgccc ggccatttgt tggtcgcatc caaacccatt ttgccgccga gtccgctgac
    20341 ggggctggcg aagtcgagat aatcgatggg cgtgttttct accaaaacag tgtcgcgcac
    20401 ggggtccatg cgcgtggtga ccgcccagat gacttctttc cagtcgcgta cgttcacatc
    20461 gtcatccacc acgatgatga atttggtgta cataaactgg cgcaggaacg accagcagcc
    20521 catcatcacg cgcttggcgt gtccggcgta ctgttttttc atgctcacca ccgccatgcg
    20581 gtaggagcag ccttcgggcg gcaggtaaaa atcggtgatt tcggggaact gcttttgcaa
    20641 gagcggtacg aacacttcgt tcaatgccac gcccaaaaca gcgggttcat cgggaggttt
    20701 gcctgtgtag gtcgaatggt aaatcgggtt ttcgcgcatg gtgatgcgct cgaccgtaaa
    20761 tacagggaaa tgatcctgct cgttgtaata gccggtgtgg tcgccgtatg ggccttccaa
    20821 cgcggtttcg ttcggatgaa tcacgccttc caatacaatt tcagcacggg caggcacttg
    20881 caaatcgttg ccgatacatt tcaccagctc cgtccgcgaa ccgcgcagca gtccggcaaa
    20941 ctggtattcg ctcaaagtat cgggaacagg cgttaccgct ccgagaatag tggcagggtc
    21001 gcaaccgagc acgacggcga cgggatacgg cgtatcggga ttgagtttgc ggaactcctg
    21061 ataatccaac gcgccgccgc gatgcgacag ccagcgcata atcagcttgt ttttgccgat
    21121 gagttgttgg cggtaaatgc cgagattttg gcgttttttg tgcggcccgc gcgttacggt
    21181 caagccccat gttaccagcg gcgcaacgtc ttccggccag caatgctgaa tcggaagttt
    21241 atacaaatca acgttttcgc cttcccacac gatttcctga cacggcgcgt ttttcaccac
    21301 gttcggcgcc atgctccaaa tgtctttcag tagcggcagt ttggaaaacg catctttgat
    21361 gcctttgggc ggttcgggtt ctttcaaata cgccagcgtc tgcccgattt cacgcagctt
    21421 ggacacgctg tccgcgccca tgcccatcgc cacacgttcg ggcgtgccga acaggtttgc
    21481 caacacagga taaccgtagc gcgtaccgtc gggcttaacc gggttttcaa acagcaacgc
    21541 cggcccttcg gcgcgcagca cgcggtcggc gatttcggtc atttccaaat gcggggaaac
    21601 ggggtgcgcg atgcgtttga gtttgccctg ctgctcgagc atggcgatga agtcgcgcag
    21661 gtctttgtat ttcatattca tcctttttgt ccttttatcc tgagcaatcc gattcggata
    21721 ccgcccctat ccttgcctgc gcttcggcat attctatgcc gtgataaaag tcgcgtacca
    21781 gcggatgttc gctgccttga tggagttgca acaaaggacg ttgaccatcg ggttgggtaa
    21841 cgacattgca atgcaaaccg aaggtgtcgg tttcataagg gggcagccgg ttgcagatca
    21901 tcccgaaata aacgacattt tccggattgt cgtgaaagtg gctttgatag tcgttaaaac
    21961 tcttttcgct gacggacacc cacacgccgt attccagcgt ttcctcatgc ccgataatcg
    22021 gaataagcag caccgcgcgg ataaaacggt cggtttggtc gggatagcgg atgatgcaga
    22081 aatcgccgcc gcattcagct tggtaagcaa tgcgttcttc ttcactgagt tgattatagg
    22141 gatagggggc ggtaaagccg attgcgggca tatcttcatg tttttcgccg caggaagtgc
    22201 aagtgtacat aaggtttcag actttcaaaa cgagtttgcg gtaaagccat tcgccggcaa
    22261 acggcatccc catcaataca taggcaatca cgccggtata aaccgcccac caatcatatc
    22321 gccccaaccg tgccaacaaa gcggcaagcg tcccgttggc aataaagaat acgcaccaaa
    22381 cctgcgttac ccggcgggta tagcgcacag ctttttcagg caggtcgggc tgttgcagcc
    22441 gcgcaagttt ttcaatcacc gtctgcccgg caaacaggct gccgccgaac accgccaaca
    22501 tcatcagatt gacgaggacg ggataccaat acatcgaatc atgccgcccg aacaccaata
    22561 ctgcggcaaa aaacagtgta ataaacaaag ccgcataacg ctgttggggc agtttggcag
    22621 tcagggcgcg cagcagccac aacccgcaca tcgccgccgc cagccagaca aaccagcccg
    22681 cctccctgcc gtaatatagt ggattaacaa aaaccagtac agcgttgcct cgccttgccg
    22741 tactgtctgc ggcttcgtcg ccttgtcctg atttttgtta atccactata ccacaaagcg
    22801 ggataggcaa tgcttaatac ggtcagaaaa atatgtccga aaaaaccggg tttcattttg
    22861 aatccgcaca aatgttttca gacggcatcc gataaaaaca tgccgtctga aaaataatta
    22921 gaaatacccg attagcccgc ctgaatcttc aataccgcct gtaccacgtc gttgacggtg
    22981 cggacattgc ggaaatcttc agcctgcagc ttgcgggctg ccacagccat tcacgattgc
    23041 gatatacccg gcggcattcc cgactgccgt tcagcagaaa gcgcacccat tccaaaccgc
    23101 tccaatatgc ctcgggcagc ataccggctt cagacggcat atcgtccgaa gcagataaag
    23161 tcaggctgta acgcgtccct ttggtcagaa ccatcgccaa agcataagca aacggcgcgc
    23221 gcgttgccga tacggcatat ccttccggca gcggatcgtc cgccgccaaa accaaaaccg
    23281 acccgcatcc ctcttccaac agtgataccg cttccgccaa tgccgtttcc acaccgtcgg
    23341 cacacacggc caatgccgtc tgctcgctca tatcccgcct caatatcgac cattaccccg
    23401 ccgttgcatt gtgcaccgac aaaccgaacg aagtcggcga cacggtttgc gatttcaaca
    23461 gttccaacca caaatcgaaa ctgcgcgcca tttccccgtc gtgcgaggca taaactatag
    23521 tggattaaat tttaggggct gtactagatt agcagatatg ttaccctcga aatatgaaga
    23581 taacacactg caaattaaag aaaaaagtac agaaagaact gctccgtttt ttgtgctgga
    23641 agttaccgcc
//
LOCUS       DAXIFS010000010        23056 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.010, whole genome shotgun sequence.
ACCESSION   DAXIFS010000010 DAXIFS010000000
VERSION     DAXIFS010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23056
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.010"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1080
                     /locus_tag="ACFOCA_000334"
     CDS             <1..1080
                     /locus_tag="ACFOCA_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6987106.1"
                     /translation="HEKTFFDKYGVRVSLLEDEDFIRAASMLAEEVFGFCIYKESKGS
                     GGRFYERCWLMGSEDVLYGRVHFGGQNNTILFELTGTGCGVAKEGWESRLFAFLTNAI
                     RPKITRVDIAKDFFNGEYSPNQAREDRNKGMFTCHHVKPKGECLGSDWEEDDEAKMTK
                     GKTYGIGSRESSKYVRVYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQNPGEYFG
                     GAYPICERFAQKATRIHAVKEDKVISADRYLEWVKKQFGRAANGLKFIFPELDKAKLF
                     ELIEPSHHKLPKSLAPEAYDCAFLKAQAIHEQPAFKPYKDPYYMYEYYENLEKQLEQQ
                     KHVNNEESYNNFIYDKFARLPISWA"
     gene            1125..1415
                     /locus_tag="ACFOCA_000335"
     CDS             1125..1415
                     /locus_tag="ACFOCA_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987107.1"
                     /translation="MNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALG
                     SSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG"
     gene            1420..1617
                     /locus_tag="ACFOCA_000336"
     CDS             1420..1617
                     /locus_tag="ACFOCA_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987108.1"
                     /translation="MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAI
                     NAGLEEIGNQYEFVVFGFLKD"
     gene            1691..1909
                     /locus_tag="ACFOCA_000337"
     CDS             1691..1909
                     /locus_tag="ACFOCA_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6987109.1"
                     /translation="MKFINTCRKYGAKLAVVTAAPLALAAHANATLPDTAKNALEAAK
                     ADGMEAGWIVVGVFAALFVFSIVKRVMK"
     gene            1916..2194
                     /locus_tag="ACFOCA_000338"
     CDS             1916..2194
                     /locus_tag="ACFOCA_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987110.1"
                     /translation="MYYQVGNKCLEKHQAENLYFSLVVPRIKENGQIVRPEYNGSLWK
                     MSDGQPLRLLLAECSLKDNLQSGLETGWIVFGILASVYFVSLLKKVLK"
     gene            2322..2639
                     /locus_tag="ACFOCA_000339"
     CDS             2322..2639
                     /locus_tag="ACFOCA_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HFC6987111.1"
                     /translation="MNKPFITQAQLALYKYQPSSKYFGQSMAVIAQSEFVEFAKINKS
                     ENVIDCFSFFWNRRIKHDIWLISFSDNSEMVIKESLKDGHKIYKFEFCEIVDNCNFDD
                     VFV"
     gene            2623..3018
                     /locus_tag="ACFOCA_000340"
     CDS             2623..3018
                     /locus_tag="ACFOCA_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6987112.1"
                     /translation="MMYSFEANANAVKISETVSVDTGQGAKIHKFVPKNSKTYSSDLI
                     KTVDLTHIPTGAKARINAKITASISRAGVLAGGGKLARLGAKFSTRAVPYVGTALLAH
                     DVYETFKEDIQARGYQYDTETDKFVKVSG"
     gene            complement(3517..3592)
                     /locus_tag="ACFOCA_000341"
     tRNA            complement(3517..3592)
                     /locus_tag="ACFOCA_000341"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3557..3559),aa:Asn,seq:gtt)
     gene            complement(3685..4044)
                     /locus_tag="ACFOCA_000342"
     CDS             complement(3685..4044)
                     /locus_tag="ACFOCA_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HFC6987113.1"
                     /translation="MQQLLISILEDLNNTSTDIIASAVISTDGLPMATMLPSHLNSDR
                     VGAISATLLALGSRSVQELACGELEQVMIKGKSGYILLSQAGKDAVLVLVAKETGRLG
                     LILLDAKRAARHIAEAI"
     gene            complement(4067..4711)
                     /locus_tag="ACFOCA_000343"
     CDS             complement(4067..4711)
                     /locus_tag="ACFOCA_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HFC6987114.1"
                     /translation="MESTLSLQANLYPRLTPAGAFYAVSSDAPSAGKTLLHSLLKADA
                     DEMVSSEKLLTWADTADIDTALNLLYRLQKLEFLYGDENGHSDGINLSDEQLPLLMEQ
                     LSGSGKALLVDRNGLYLANANFHHEAAEELGLLAAEVAQMEKKYRLLIKNNLYINNNA
                     WGVCDPSGQSELTFFPLYIGSTKFILVIGGIPDLGKEAFVTLVRILYRRYSNRV"
     gene            complement(4713..5249)
                     /locus_tag="ACFOCA_000344"
     CDS             complement(4713..5249)
                     /locus_tag="ACFOCA_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HFC6987115.1"
                     /translation="MRENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKR
                     NTTVAMDYGAISLDEDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKD
                     LEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKHNLNVPVFEIDARKEDD
                     VKQLVSAMLFSIDPGLEV"
     gene            complement(5261..6358)
                     /locus_tag="ACFOCA_000345"
     CDS             complement(5261..6358)
                     /locus_tag="ACFOCA_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6987116.1"
                     /translation="MEVQLPKIKTVRVMLAGMTAQQESVFKMAFKMHNTTRYETVSPS
                     DGSAVPDLVLADTDAEGGFELWKELAERYKDIPVAVCSEKVPDSEVPYLPKPIRFETL
                     FPMLRKLLQGENVYGKSFIAPADRSAKNNGNVQRTVTIRQFNPNKGLLGALRFAEKNR
                     QDIAILHGNKPVLIVFPSIQRVLLTESVQKLEELCKDENLQVSCKTVPDNPQWREKAK
                     VGIMSCMWQFSIWTAQGRLIYPISPDTPFTLKSWPNLTRLASVPGSIRLSAFLTKASV
                     NLNVLYKVMPLNLNDILNYLAATYTTGFLSVDLKTVSQQAYSDMADKINIGADSASDS
                     EMMKKAEKITTPSQSQSRGLLQRLMKKLLGS"
     gene            complement(6361..7797)
                     /locus_tag="ACFOCA_000346"
     CDS             complement(6361..7797)
                     /locus_tag="ACFOCA_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6987117.1"
                     /translation="MENSLIIGLALAVLLMLLVMRAKQGKKTPKRKSQGVGNTQGQTP
                     GSNDSDWVDQIGQSVSDGTQPDWSWNESAETASAAVSAQEVDPLTEYQVYKQFGYQGK
                     AAESLAAYLDGIPDGEAKPENLIRELLDINLEVGDVDVLADNLQKYGKLIPSELLAKY
                     IEQALQRDSNHLRIRVLAEEGLGWGTQEIEKRAEGGSATAASASPPPDAGGKAYEAEE
                     IKRIPIVRGKKDVSGISQEEIGAIAGLVRADQGAKILKDKVSYETASKQYDRAIQTSE
                     KPANLIIDALKLDYQHADIDRFAGHLWKLYQTLGNYGRQVKERMLGWGYSLGYHEVFD
                     DLEKGPNDRQIKDIGMGHGYLPKNIQKFKSQHRDLVLQDSSLINTGSSPADDAVKEVE
                     SLLMYGQIEAAMDVLEQAVLKYPDESQLYITLIDIYERTEDWDRLGQFLRVLRERADR
                     LPEEVVMLMSRLLQRMNQNIKKIKRYGK"
     gene            complement(8017..8799)
                     /gene="bioC"
                     /locus_tag="ACFOCA_000347"
     CDS             complement(8017..8799)
                     /gene="bioC"
                     /locus_tag="ACFOCA_000347"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HFC6987118.1"
                     /translation="MESLTAINKSRIRQAFQKALNDYDRHALIQQKMTINLMAHLQDY
                     LPDMPLENVLELGCGSGMLSALLQKQISANYWLFNDLCDVQPQLAEKLPQSFDFYCGD
                     AENFPFQRQFDLIASASAVQWFHQPDAFIAHCKTGLKANGLLAVATFGKDNLKEVRQI
                     TNIGLNYPTLSQWQTWLAKDFELLWCEDFKVILDFDTPLDVLKHLKYTGVTATNQKNW
                     TRKNLNGFIGDYLSAFSMPSGKVHLTYHPLFFIARYSAAGRQ"
     gene            complement(8787..9434)
                     /locus_tag="ACFOCA_000348"
     CDS             complement(8787..9434)
                     /locus_tag="ACFOCA_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFC6987119.1"
                     /translation="MKTKFYNHQGGHLILYFAGWGTPPDAVNHLILPENHDLLICYDY
                     QDLNLDFDFSAYRHIRLVAWSMGVWAAERALQGIRLKSATAVNGTGLPCDDNFGIPCA
                     VFKGTLENLTENTRLKFERRMCGDKVSFEDYQQFPARPFDEIHQELTALFEMIGQDRR
                     ADLIRWTNALVGSGDKIFMPANQHRYWTPRCTVREIDGGHYLFSRFTHWSALWNH"
     gene            complement(9444..10586)
                     /gene="bioF"
                     /locus_tag="ACFOCA_000349"
     CDS             complement(9444..10586)
                     /gene="bioF"
                     /locus_tag="ACFOCA_000349"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HFC6987120.1"
                     /translation="MNVFKQQLEQLGAQNQYRSIPDLIHQGRYITRENRKMLNMSSND
                     YLGLASDENLRRSFLQQYGGNFPSFTSSSSRLLTGNFPIYTDLEQLVAQRFQRESALL
                     FNSGYHANLGILPALTTTKSLILADKFVHASMIDGIRLSRCAFFRYRHNDYEHLKNLL
                     EKNVGKFDRTFIVTESVFSMDGDVADLKQLVQLKKQFPNTYLYVDEAHAIGVYGQNGL
                     GIAERDNLIAEIDLLVGTFGKALASVGAYAVCNQVLKECLINQMRPLIFSTALPPFNV
                     AWTYFIFERLPQFSKERSHLEQLSAFLRREVAHRTQIMPSQTCIVPYILGGNEATLAK
                     AEYLQRQGYYCLPIRPPTVPKGTSRIRLSLTADMTMDEVRQFAVCL"
     gene            10809..11885
                     /locus_tag="ACFOCA_000350"
     CDS             10809..11885
                     /locus_tag="ACFOCA_000350"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HFC6987121.1"
                     /translation="MICRKPIGHTPYFDMNKTICRTAALLISGFSYANTVIPDVSPVA
                     QGQHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS
                     IQKERGDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASVPGVRSHGCVRMKS
                     PDALEFAKTIASGSPASVIYQMAGLNEDADRNLWLAAFRDPYGKNNLDIASLKKSIAQ
                     WAKTQGKTIAPEKVDAVLKDRTGSAVCLTCGKNGKMKMPLKSLAWIQGSSSYSQAEVI
                     EQTEETNSAEISETRTPEVPDVHTPEAQPHLNTQSDGTPTAYTEPAADSSPQVETPDQ
                     AASEPVDVLFSIDVIRQGNLRLGN"
     gene            complement(12092..13558)
                     /locus_tag="ACFOCA_000351"
     CDS             complement(12092..13558)
                     /locus_tag="ACFOCA_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6987122.1"
                     /translation="MMKLGFKPIPLAIAAVLCALVLALPVPDGVKPQAWTLLAMFVGV
                     IAAIIGKAMPLGALSIIAVGLVAVTGVTADKPGAAMSDALSAFANPLIWLIAIAVMIS
                     RGLLKTGLGMRIGYLFIAVFGRKTLGIGYSLALSELLLAPVTPSNTARGGGIIHPIMQ
                     SIAGSYGSNPAKGTEGKMGKYLALVNYHSNPISSAMFITATAPNPLIVNLIAENLGSS
                     FRLSWGAWAWAMAVPGVIAFFVMPLILYFLYPPEIKETPNAVQFAKDRLREMGKMSAD
                     EIIMAVIFGILLLLWADVPALITGNHAFSINATATAFIGLSLLLLSGVLTWDDVLKEK
                     SAWDTIIWFGALIMMAAFLNKLGLIKWFSGVLAESVGGLGVSGTAAGVILVLAYMYAH
                     YMFASTTAHITAMFGAFFAAAVSLNAPAMPTALMMAAASNIMMTLTHYATGTSPVIFG
                     SGYTTMGEWWKAGFIMSVVNFLIFFVIGSIWWKVLGYW"
     gene            complement(13756..14679)
                     /gene="speB"
                     /locus_tag="ACFOCA_000352"
     CDS             complement(13756..14679)
                     /gene="speB"
                     /locus_tag="ACFOCA_000352"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HFC6987123.1"
                     /translation="MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPY
                     DMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRD
                     FVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNG
                     SEYDHGTMFYTAPKEGLIDPSRSVQIGIRTEHSKKLPFTVLTAPQVNEDSVEETVRKI
                     KETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVE
                     VAPSYDQSDITALAGATIALEMLYLQGAKKD"
     gene            complement(14778..16670)
                     /gene="speA"
                     /locus_tag="ACFOCA_000353"
     CDS             complement(14778..16670)
                     /gene="speA"
                     /locus_tag="ACFOCA_000353"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFC6987124.1"
                     /translation="MPILTIREVCNINHWGIGYYDVDDSGEIIVRPNPSQHNQTVSLQ
                     KLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQ
                     HRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEK
                     LGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLS
                     ASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNI
                     RCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYASTVVWGISQACLEHGLPHPTIITESG
                     RGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSW
                     IHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQ
                     ERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDH
                     YIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQ
                     FTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGY
                     TYLEDE"
     gene            complement(16837..17121)
                     /locus_tag="ACFOCA_000354"
     CDS             complement(16837..17121)
                     /locus_tag="ACFOCA_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6987125.1"
                     /translation="MKKLLLAAVVSLSAATAFASDSAERQIYSDPNFEQNRVKAVKML
                     EQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR"
     gene            complement(17272..19080)
                     /gene="aspS"
                     /locus_tag="ACFOCA_000355"
     CDS             complement(17272..19080)
                     /gene="aspS"
                     /locus_tag="ACFOCA_000355"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFC6987126.1"
                     /translation="MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGI
                     VQVVIDPDTPEAFAAADSARNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVL
                     NAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFID
                     IETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALNVDLGDFPRMPYAEA
                     MFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKE
                     IDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIARTGAE
                     NGDIIFFGADKAKVVNEAIGALRIKVGLEHGAENGYFTDEWKPLWVVDFPMFEYDEEA
                     DRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKV
                     FAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKT
                     QRAQCLLTNAPNSVDDKQLRELSLRLRQKAAETKEA"
     gene            complement(19138..19839)
                     /locus_tag="ACFOCA_000356"
     CDS             complement(19138..19839)
                     /locus_tag="ACFOCA_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HFC6987127.1"
                     /translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
                     QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
                     PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPK
                     DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
                     AGPMPSEKADLPEQQ"
     gene            complement(19982..21109)
                     /locus_tag="ACFOCA_000357"
                     /pseudo
     CDS             complement(19982..21109)
                     /locus_tag="ACFOCA_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236077.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
     gene            complement(21290..21553)
                     /gene="rpsT"
                     /locus_tag="ACFOCA_000358"
     CDS             complement(21290..21553)
                     /gene="rpsT"
                     /locus_tag="ACFOCA_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFC6987128.1"
                     /translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
                     AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
     gene            21856..22998
                     /locus_tag="ACFOCA_000359"
     CDS             21856..22998
                     /locus_tag="ACFOCA_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFC6987129.1"
                     /translation="MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDT
                     LNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFL
                     PRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGK
                     ELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDL
                     KAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEV
                     LTPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKM
                     PAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN"
BASE COUNT         6087 a         5816 c         5340 g         5813 t
ORIGIN      
        1 catgaaaaaa cctttttcga taaatacggc gttcgtgtaa gtcttttgga agacgaagat
       61 tttattcgcg ccgcgtccat gctcgccgaa gaagttttcg gtttctgtat ctacaaagaa
      121 tccaaaggct cgggcggtcg tttctatgag cgctgttggt tgatgggttc ggaagacgtc
      181 ctatacggtc gcgtccattt tggcggacaa aacaatacca tccttttcga actgaccggc
      241 accggttgcg gcgtcgcaaa agaaggctgg gaatcacgac ttttcgcatt cctgactaat
      301 gcaatccgcc caaaaatcac acgcgttgac atcgcaaaag actttttcaa cggcgaatac
      361 agcccgaacc aagcccgtga agaccgaaat aaaggtatgt ttacctgtca tcacgtcaaa
      421 ccaaaaggcg aatgtttggg gtcagattgg gaagaagacg atgaagccaa aatgaccaaa
      481 ggcaagacct atggtatcgg ctcccgtgaa tcgtccaaat atgtccgcgt ctatgaaaaa
      541 ggcaagcagt tgggcgataa aacaagcaca tggacgcgct ttgaaattga attcaaagca
      601 aaagacatcg ttatcccttt cgaagttttg cagaatccgg gcgaatattt cggcggcgca
      661 tatccgattt gcgaacgatt cgcccaaaag gcaacgcgca tacacgcggt taaggaagat
      721 aaggtcattt cagccgaccg ctaccttgaa tgggtaaaaa aacagttcgg acgtgcggca
      781 aacggtctga aattcatttt tcccgaattg gacaaagcca aactgtttga actgattgag
      841 ccgagtcatc acaagctgcc caagtctttg gctcccgaag cctacgactg cgcctttttg
      901 aaagctcaag ccattcatga acagcccgca ttcaaaccgt acaaagaccc ttactatatg
      961 tacgaatatt acgagaatct tgaaaaacag cttgaacagc aaaaacacgt caacaatgaa
     1021 gaaagctata acaacttcat ttacgacaaa ttcgcaagac taccgatttc atgggcttaa
     1081 agtgtctgcc cgaaagacgt ttaatcacac aaggaaacca aaaaatgaac atccaacttc
     1141 aaggccacat cgtcggcgtt aaaaaattca acggacaaat cgaaggcaag agcttcgact
     1201 attgccgcct gattgtcgcc acacccttag acagctccca aggcaacgca ttgggcagct
     1261 ctactactga atacgatttc ggcggctctg ccaatttcga gcagttccga aacgcccaat
     1321 ttcccatcga agcaaacctg aacgtggaaa tcgttactac gggcaaaacc caaaaactga
     1381 aagtcatcgg ttttcaactc gtgaagaaag gctgattgaa tgcagaaagt ctatgttgtc
     1441 cagtccgtat caacagggga ctttctgtat ctctctcctg aaacgggcga catcggacat
     1501 accaaattaa tcaccaatgc cgattatttc tacgacttcg aagaagcgat taacgcaggt
     1561 ttggaagaaa tcggcaacca atacgaattt gtcgtattcg gatttttgaa agactgattt
     1621 tcggatgttc ggcggtcgtc tgaaaaacgc tccatccatt accgccaaac actttttgaa
     1681 ggaaaatatc atgaaattta ttaacacctg ccgtaaatac ggcgcaaaac tggctgttgt
     1741 aacagctgct cccctggctt tggccgcaca tgcaaatgca acgttgcccg atacggcaaa
     1801 aaacgctttg gaagccgcaa aagcggacgg tatggaagcc ggttggattg tcgttggcgt
     1861 tttcgccgcg ctttttgtat tttccatcgt taagagagtg atgaagtaag acggcatgta
     1921 ctaccaagtc ggaaataaat gtcttgagaa gcaccaggct gaaaaccttt atttcagctt
     1981 ggtagtacca agaatcaaag aaaacggaca gattgtcagg ccggaatata acggcagcct
     2041 gtggaagatg tcggacggtc agccgctaag gcttttattg gcggaatgca gtctgaaaga
     2101 caacctgcaa agcggccttg aaacaggctg gatagtattc ggcatcctcg cgtccgttta
     2161 ctttgtttcc ctgctgaaaa aggttttgaa atgatggatt tttattttta tctcggcgtt
     2221 tccgtacccg tattaatcgg ggcggttctg tttaagaatt gagcgcatga agttatggtg
     2281 tcaaaatcag gctttcaaaa caatcattga aaggcagaac catgaacaag ccgtttatca
     2341 ctcaggcgca gttggcactt tataaatatc agccgtctag caagtatttt gggcaatcga
     2401 tggcggttat agcgcaatct gaatttgttg aatttgcgaa gattaataag tctgaaaatg
     2461 ttattgattg tttctctttt ttctggaata gaagaattaa acatgatatt tggctaatct
     2521 cattttctga taattcagaa atggtaatta aagaatccct gaaagatggt cataaaatat
     2581 acaaatttga attttgcgaa attgtcgata attgcaattt tgatgatgta ttcgtttgaa
     2641 gcgaatgcaa atgcagtaaa aatatctgaa actgtttcag ttgataccgg acaaggtgcg
     2701 aaaattcata agtttgtacc taaaaatagt aaaacttatt catctgattt aataaaaacg
     2761 gtagatttaa cacacatccc tacgggcgca aaagcccgaa tcaacgccaa aataaccgcc
     2821 agcatttccc gcgccggcgt attggcgggg ggcggcaaac ttgcccgctt aggcgcgaaa
     2881 ttcagcacaa gggcggttcc ctatgtcgga acagcccttt tagcccatga cgtatacgaa
     2941 actttcaaag aagacataca ggcacgaggc taccaatacg acaccgaaac cgacaaattt
     3001 gtaaaggtct caggctaagt gcgcctgttg ccgcctaaaa ggtaacccgg atgcctgatt
     3061 atcgggtatc cggggaggat taagggggta tttgggtaaa attaggaggt atttggggtg
     3121 aaaacagccg aaaacctgtg ttggggtttc ggctgtcggg agggaaagga attttgcaaa
     3181 ggtctcaatt agtatagtgg attaacaaaa atcaggacaa ggcgacgaag ccgcagacag
     3241 tacaaatagt acggaaccga ttcactcggt gcttcagcac cttaaagaat cgttctcttt
     3301 gagctaaggc gagccaatgc cgtactggtt tttgttaatc cactataaaa tcgagtttat
     3361 cctagttgtc caggacagcc cctatttttt cataaccatc acgaaaggaa ttttgcaaag
     3421 attttattcc atctcaaaac aatcatctca aaaatgcgtt tctgaccgcc ggtaaaacaa
     3481 aaccctctaa gaaaatactt agagggtttt gaaatttggc tccccgacct gggctcgaac
     3541 cagggacctg cggattaaca gtccgtcgct ctaccgactg agctatcggg gaataagcgc
     3601 gaataataaa acagaaatac cgaacgtgtc aatataaatt gacaatcgat tgcactttat
     3661 ctgcaagccc gcaatcttta tatgttatat ggcttccgca atatgccttg ccgcacgttt
     3721 ggcatccaat aggattaaac caagtctgcc ggtttctttt gccaccagca ccaacacggc
     3781 atctttaccc gcctgactta aaaggatata gcctgatttt cctttaatca tcacttgttc
     3841 caattccccg caggcgagtt cctgcaccga gcgactcccc aaagcaagca aagtggcaga
     3901 aatcgcccct accctgtccg aattcaaatg tgaaggaagc attgtcgcca tcggcaatcc
     3961 gtcggttgag ataacggcag acgcgataat atccgtagat gtattgttta aatcttcaag
     4021 gattgaaatc aataattgct gcataacccc tcctctctcc caagttttac acgcggttgc
     4081 tgtaacggcg gtataaaatc cttaccaaag taacaaatgc ctctttgccc aaatcgggaa
     4141 tgccgccgat aaccaaaata aatttggttg aaccgatata caatgggaaa aatgtcaatt
     4201 cgctctgacc ggaaggatcg caaacgcccc aagcgttatt gttgatatac aggttgttct
     4261 taatcagcag ccggtatttc ttttccatct gtgcgacttc tgccgccaac aaccccaact
     4321 cttccgccgc ctcatgatgg aaattggcgt tggcaagata cagaccgttc cgatcgacca
     4381 ataacgcctt accgctgccg gacaattgtt ccatcagcaa cggcaattgc tcgtccgaca
     4441 aattgatgcc gtctgaatga ccgttttcat cgccatagag gaattcgagt ttttgcaaac
     4501 ggtacaacag gttcaaagcg gtatcgatgt cggcggtgtc cgcccaggta agcagcttct
     4561 cactgctgac catttcgtcc gcatccgctt tcaacaggct gtgcaacaaa gttttaccgg
     4621 cactgggggc atcgctggat acggcataaa atgcaccggc aggagtcagg cggggatata
     4681 aatttgcttg tagtgaaagt gttgattcca tattaaacct ccagtcccgg atcaatagaa
     4741 aataacattg cgctaaccaa ttgttttacg tcatcttcct tacgggcatc aatttcaaaa
     4801 accggaacat taagattatg ttttgcaaga tatttgtgat acacgtcgat accgggctga
     4861 gagcgtatat ccatcttggt aataccgaca acgacgggtg ccttctccag cagccctcga
     4921 aacgaatgta aaaagaattc caaatctttc aacggattgg ttcgggcatt atctaaaagc
     4981 aagaccaaac ccatactgcc ttggcttaag atttcccaca taaagttgaa ccgttcctga
     5041 ccgggcgtac catataaatg gactttggta tcctcatcca agctgatggc cccgtagtcc
     5101 atcgccactg tcgtattcct tttcctatcc aaagtcatat cggatgcgga agcatcggtc
     5161 tgaacgagtg cttcgtccga aatagccgca atggcagtgg ttttccctac gccgacaggt
     5221 cctgtgaaaa taattttatt ttctctcatc tctccgcctc ttagctgccc aacagttttt
     5281 tcatcagcct ttgcagaagg ccgcgcgact gggattggga tggtgttgtg attttttccg
     5341 cttttttcat catttcacta tcagaggcag aatcggctcc gatatttatt ttatccgcca
     5401 tatcggagta tgcctgttgt gaaaccgttt ttaaatctac cgacaaaaac ccggttgtat
     5461 aggttgccgc aagataattc agaatatcat tgaggtttaa aggcatcact ttatacaaca
     5521 cgttaaggtt gacggatgcc ttggtcagaa atgccgacaa gcgtatcgac cccggcacac
     5581 ttgccaaccg ggtcaggttt ggccaagatt tcaacgtaaa cggagtatcg ggagaaatcg
     5641 gataaatcaa cctgccctgc gccgtccaaa tggaaaactg ccacatacag gacataatgc
     5701 ctactttagc cttttcgcgc cattgcgggt tatcgggaac agtcttgcag ctgacctgca
     5761 aattttcgtc tttgcacaat tcttcgagtt tttgcacact ttctgtcagc aaaacccgtt
     5821 gtatcgaggg gaaaacaata aggaccggct tatttccatg caagatagcg atgtcctgcc
     5881 tgttcttttc cgcaaaccgc aacgccccca ataatccttt attcgggtta aactggcgta
     5941 tcgtaaccgt acgctgcaca ttcccgttat ttttcgccga ccggtctgcg ggtgcaataa
     6001 acgatttccc ataaacattc tcgccctgca acaatttgcg gagcatagga aacaatgttt
     6061 caaaccgaat cggtttgggc aggtagggaa cttcagaatc gggaactttc tccgaacaga
     6121 cggcgacggg tatatcctta taacgctcgg caagctcttt ccaaagttca aaaccgccct
     6181 cggcatcggt atccgccaaa accaaatcgg gcacggcact gccgtctgaa ggggatactg
     6241 tttcataacg ggtggtattg tgcattttga atgccatttt gaaaacggat tcctgctgcg
     6301 ccgtcatccc cgccaacatt acgcgtactg ttttaatttt cggcagttga acttccattt
     6361 ttattttccg taccgtttta tttttttaat attttgattc atacgctgca gcagccggct
     6421 catcagcata acgacctctt caggaagcct gtccgcacgt tccctcaata cccttaaaaa
     6481 ctgccccaac ctatcccaat cttcagtacg ttcataaata tcgatcaacg taatataaag
     6541 ctgggactcg tcgggatatt tcaataccgc ctgctccaac acatccattg ccgcttcaat
     6601 ctgaccatac atcagcaacg actctacttc tttaaccgca tcgtctgccg gagacgaacc
     6661 ggtgttgatc aacgaagaat cttgaagcac caaatcccga tgttgcgatt tgaatttctg
     6721 tatatttttc ggcagatacc cgtgccccat accgatgtct ttgatttgcc ggtcgttcgg
     6781 ccctttttcc aaatcatcga aaacttcatg gtaacccaag ctgtaccccc accccagcat
     6841 ccgctcttta acctgcctgc cgtagttgcc caacgtttgg taaagtttcc acaaatgtcc
     6901 ggcaaaacgg tctatgtccg cgtgttggta atcgagtttc aacgcatcga taatcaggtt
     6961 tgcaggtttt tcggaagttt ggatggcacg gtcgtattgt ttcgatgccg tttcatagct
     7021 gactttgtct ttaaggattt tcgcaccttg atcggcacgg accaaaccgg caatcgcacc
     7081 gatttcctct tgactgattc cggacacgtc ttttttgccc cgcacaatcg ggatgcgctt
     7141 gatttcttcg gcttcataag ccttaccgcc ggcatccggc gggggcgatg cggaagctgc
     7201 cgtcgcagaa ccgccttccg cacgtttttc aatctcctga gtaccccatc ccaaaccttc
     7261 ttccgccaag acgcggatac gcaaatggtt tgaatcgcgc tgtaatgcct gttcgatata
     7321 ttttgccaaa agttcggaag gaatcagttt gccgtatttt tgcagattgt ctgccaaaac
     7381 atcgacatcc cccacttcga gattgatatc gagcagctcg cggataaggt tttcaggttt
     7441 cgcttcacca tccggaatgc cgtccagata ggcagccaaa gattcggcag ccttgccctg
     7501 ataaccgaat tgcttataaa cctgatactc cgtaagcgga tcgacttctt gcgcggatac
     7561 ggcggcggat gcggtctcgg cactttcgtt ccaagaccag tcgggttgcg tgccgtctga
     7621 aaccgattgt ccaatctgat cgacccagtc cgaatcattg cttccgggtg tctgcccctg
     7681 cgtattgccg acaccttggg atttgcgctt cggtgttttc ttaccctgct tcgcacgcat
     7741 aaccaaaagc atcagcaata ccgccagtgc caaaccgata attaatgagt tttccaaagg
     7801 atactcccga taccgtaacg agcggatagc tgaccgcctg caacggccat tgtccgcttt
     7861 tattattaac gatttactga aatagacttg taagttttaa atcataccat aatttaacgt
     7921 ttaacaatat gccttctgca caagcctcgc catattacct tttacccaca tcagtatcaa
     7981 tacccgatat aaaaataact ttgcccataa gctgccttat tgcctgcccg ccgcagagta
     8041 gcgcgcgata aaaaataacg gatgataagt caggtgcact ttgcccgacg gcatactgaa
     8101 cgccgacaaa taatcgccaa taaatccatt gagatttttt cttgtccaat ttttttggtt
     8161 cgtggctgtt acgcctgtat atttaaggtg tttgagtaca tctaacggcg tatcaaagtc
     8221 tagtattacc ttaaaatcct cacaccataa aagctcaaaa tctttggcta accaagtctg
     8281 ccattgggat aaagtcgggt aatttaagcc tatatttgta atttggcgga cttcttttaa
     8341 attgtctttg ccaaaggttg caaccgccaa taatccgttt gctttcaagc ctgttttgca
     8401 atgggcgata aaagcgtcgg gttgatgaaa ccattgcacg gcagatgcgc ttgcgattaa
     8461 gtcaaattgt cgttgaaaag gaaagttttc cgcatcgccg caataaaaat caaaggattg
     8521 cggcagtttt tcagccagtt ggggctgcac atcgcacaaa tcattaaata accaataatt
     8581 cgctgaaatc tgtttttgca gcaaggcact caacattcct gagccgcagc ccaattccaa
     8641 cacgttttcc aatggcatat ccggcaaata atcttgcaaa tgcgccatta aattaatcgt
     8701 cattttttgt tggattaagg cgtgccggtc ataatcgttt aatgcttttt ggaaagcctg
     8761 ccgaatgcgc gatttattta tggcagtcag tgattccata gtgccgacca atgggtgaat
     8821 cttgaaaaca ggtaatgtcc gccgtcaatt tcccgaacgg tgcaacgcgg tgtccaatat
     8881 cggtgctgat tggcaggcat aaaaatttta tcgcctgatc cgaccaaggc atttgtccag
     8941 cgaatcaaat ctgcgcgcct atcttgcccg atcatctcaa aaagtgcggt aagttcttga
     9001 tgaatttcgt caaacgggcg tgcgggaaat tgttggtaat cttcaaaaga tactttatcg
     9061 ccacacattc tgcgttcaaa ttttaaacgg gtgttttccg tgaggttctc caatgtgcct
     9121 ttaaaaacgg cgcaagggat accgaaatta tcatcgcaag gcaaacctgt gccattcact
     9181 gccgttgcgg attttaatct tattccttgc aatgccctct ctgccgccca aacgcccatt
     9241 gaccacgcca ccaaacggat gtgccgatag gcggaaaaat caaaatccaa atttaaatct
     9301 tgataatcgt agcaaatcaa taaatcgtga ttttccggca aaatcaaatg atttacagca
     9361 tcgggcggcg ttccccaacc tgcaaaatac aggattaaat gtccgccttg atgattgtaa
     9421 aattttgttt tcatatcata tccttacagg cacaccgcaa actgccgcac ttcatccatt
     9481 gtcatatctg ccgtcaaaga caatcgtatt ctggatgtac cttttggtac tgtcggtggt
     9541 ctgatgggca ggcaataata accctgcctt tgcaggtatt ccgctttggc aagggtggct
     9601 tcattcccgc ctaaaatata ggggacgata caggtttggc tcggcattat ttgcgtccga
     9661 tgcgccactt cccgccgtaa aaatgcgctt aactgctcaa gatggcttct ttcttttgag
     9721 aattgcggca atcgttcaaa aataaaataa gtccaagcca cattaaacgg cggcaatgcg
     9781 gttgaaaaaa tcaatgggcg catttgatta atcaaacatt ctttcaatac ttggttgcag
     9841 acggcatacg cccccaccga ggctaaggct ttaccgaaag tgccgaccaa taaatcaatc
     9901 tcggcaatca aattatcccg ttcggcaatc cccaatccgt tttgcccata aacaccgatt
     9961 gcgtgggctt catccacata aagataagta ttgggaaact gtttttttaa ttggacaagc
    10021 tgtttcaaat ccgccacatc gccgtccata ctgaaaacag attcggtaac gataaaagtg
    10081 cggtcaaatt ttccgacgtt tttttcaagc agatttttca aatgttcata atcattatga
    10141 cgataacgga aaaacgcaca ccggctcaaa cggatgccgt caatcatact ggcgtgaaca
    10201 aatttatctg ccaaaatcaa acttttcgtc gtcgtcaaag caggcaaaat accgagattg
    10261 gcgtgatagc cgctgttgaa caataacgcg ctttcccgtt ggaaacgttg tgcgacaagc
    10321 tgctcaagat cggtataaat aggaaagttg cccgttaata aacgcgatga agaactggta
    10381 aaagagggaa aattaccgcc gtattgctgc aaaaaagacc ggcgcaagtt ttcatctgat
    10441 gccaaaccca aataatcatt agacgacata ttcagcattt tgcggttttc ccgcgtaata
    10501 taccgccctt gatgaatcaa atccggaatc gaacgatatt ggttttgcgc gccgagttgt
    10561 tcaagctgtt gtttaaaaac attcattatg atgtaaatat tcctgagtta aagcctgaac
    10621 caacccagca tcaaacaatc aagtaatgcc cttttaataa aaaccgtttt gccgccgacc
    10681 tttgccacac ccctgctttc ataatccaag gcggaaattt ccgcgacatt tgtttccgtt
    10741 gccattaccc aatccgtccg cactgtaccg aagcgcatat tttcgcacaa attggtacgg
    10801 tttcaggtat gatttgccga aaacctatcg gacacacacc atattttgat atgaataaaa
    10861 caatctgccg cactgctgca ctattgataa gcggtttttc atacgcaaac accgtcattc
    10921 ccgatgtctc ccccgtcgca caaggtcaac atgtcttcat taacatccct cagcaacgcc
    10981 tgttcctcta caccgacggc aaactgacca aggtttatcc cgttgcagta ggtcgggcga
    11041 tgacgcaaac caatctaggc gaacataaaa tcggtgcgaa agcctataac cctgtttggt
    11101 acatccccaa atccatacag aaagaacgcg gcgacggcgt aaaaaccata gccgccggcc
    11161 cggacaaccc tttggggccg gtttttgtcc gcttaggcga ccccaaactc ggtttgggca
    11221 tacacgggac caatgcgccg gccagcgtcc ccggggttcg gagtcacggc tgcgtccgca
    11281 tgaaatcgcc cgacgcgctc gagtttgcca aaaccatcgc cagcggctcg cccgcctccg
    11341 tcatctatca aatggcgggt ctcaatgaag atgcggatcg caacctgtgg cttgccgcct
    11401 tccgcgaccc ttacggtaag aacaaccttg acatcgcctc tctgaaaaaa agtattgcgc
    11461 aatgggcaaa aacacagggt aaaaccatcg cgcccgagaa agtcgatgct gtactcaaag
    11521 accgcaccgg atcggccgtc tgcctgacct gcggcaaaaa cggcaagatg aagatgccgc
    11581 tcaaatcgct ggcgtggata cagggttctt cctcatacag ccaagctgaa gtcattgaac
    11641 aaactgagga aaccaactct gccgaaatat ccgagacacg cacgcccgaa gtgcctgatg
    11701 tacacacgcc cgaggcacaa ccgcatttaa atacccaatc cgacggcacg ccgactgcct
    11761 ataccgaacc ggctgccgat tcatcgccgc aagtagaaac acctgatcag gctgcttccg
    11821 agccggttga tgtattattt tcaatagatg tgatacggca gggaaatttg cgtttaggta
    11881 attgaataac cttctgatta tttaatgctt atgtttatca gaagttgata ggcggtttgg
    11941 tttttgtttg gcttttccta caccgccgcc tgccgctttc tgcaacattc aagcgcacaa
    12001 atatgccatc tgaaggcttt agacggcata tttcacgata atagtcgccc aatcaaataa
    12061 acacagattg gaaatttatt ttatttttcc cttaccaata ccccagaact ttccaccaaa
    12121 tgctgccgat aacgaaaaaa atcagaaaat tgactacgct catgataaaa cccgccttcc
    12181 accattctcc cattgtggtg tagcccgaac cgaaaatcac aggcgaagta ccggtcgcat
    12241 aatgagtgag ggtcatcata atgttagatg cggccgccat catcagcgcg gtcggcatcg
    12301 ccggggcatt cagtgaaacg gcagcagcga aaaatgcgcc gaacatagcg gtaatatgtg
    12361 cagtagtact ggcaaacata taatgcgcat acatataagc aagcacgagg attacgcccg
    12421 cagccgtgcc gctaacgccc aaaccgccga cactttccgc caacactccg gagaaccatt
    12481 taatcagtcc gagtttattt aaaaatgcgg ccatcataat caatgcgcca aaccaaataa
    12541 tcgtatccca cgcacttttt tctttcaaaa catcgtccca agtcaataca ccggaaagca
    12601 aaagcaggct taatccgata aatgcggtgg cggtggcgtt gatactaaaa gcgtgattgc
    12661 cggtaataag ggcgggaaca tctgcccaca acagcagcaa gataccgaaa atgaccgcca
    12721 taatgatttc gtctgccgac attttaccca tctccctcag acggtctttg gcaaattgaa
    12781 cggcattggg cgtttcttta atttcaggcg gatacaaaaa atataaaatc aaaggcataa
    12841 cgaaaaaggc gataacgccg ggaacagcca ttgcccacgc ccacgccccc caagaaagac
    12901 ggaaactact gcctaaattt tcggcaatca agttgacgat taaagggttg ggggcagttg
    12961 cagtaataaa catagccgac gaaatgggat tggaatgata gttgaccaaa gccaaatatt
    13021 tacccatctt gccttctgtg ccttttgcgg gattggagcc gtaactgccg gcaatcgact
    13081 gcataatcgg atgtataatg ccgccgccgc gcgcggtatt ggaaggggta acgggagcca
    13141 gcagcagttc ggaaagagcg agactgtaac cgatgcccag cgtttttctt ccaaaaacgg
    13201 cgataaacaa atatccgata cgcatcccca gccctgtttt gagcaaaccg cgcgaaatca
    13261 taactgcgat ggcaatcagc caaatcaacg gattggcgaa cgcactcaac gcatcgctca
    13321 tcgccgcgcc cggtttgtcg gcggttacgc cggttactgc gaccaacccg acggcaataa
    13381 tcgacagcgc gcccaacggc atggccttgc cgataatggc ggcaatcaca ccgacaaaca
    13441 tggccagcag cgtccaagcc tgaggcttga ccccgtcggg tacgggcagt gccaaaacca
    13501 gggcgcacaa tactgcggca atggcgaggg gtatcggttt gaaacccaat ttcatcatat
    13561 tgacctccgt aaaaaagacc gtcccgaaaa atcggaaaaa taatatttaa ctaattgttt
    13621 tataatatat attcagatat ttcaccgtct ttccgatatg cggctccggg caacttttgt
    13681 ttcagtattt gaattttcat tagactgaat acgccgtttg aacggcacgg cgaaaacccg
    13741 ggggatgccg gacgttcagt cctttttcgc accttgaagg taaagcattt ccaaggcaat
    13801 tgtggcgccg gccaaagcgg taatgtcgga ttggtcgtaa gagggggcaa cttctacaac
    13861 atccataccg acgatgtcga gatccgtcag cccacgtagg atttttaatg ccctgtcgct
    13921 gctcaagccg ccgcatacgg gcgtaccggt cccgggggcg aacgacgggt cgaggcagtc
    13981 tatgtcgaaa gtcaggtaaa cgggcatatt gccgacggtt tctttgattt tacggacggt
    14041 ctcttcaaca ctgtcttcat taacttgggg ggcggtcaac acagtaaaag gcaatttttt
    14101 actgtgttcg gtacgtatgc cgatttgtac ggaacgggac gggtcgatga ggccttcctt
    14161 gggggcggta tagaacatcg taccgtggtc gtattcgctg ccgttgtcgt aggtgtcggt
    14221 gtgcgcgtca aaatgaatca gtgcgagttt gccgaaatag cgggcgtggg cgcgcaacaa
    14281 cgggagggta atgaaatggt cgccgcccaa actcaaacag cgtttgccgg aagaaagtaa
    14341 tttgccggcg tgcgcttcca ttttttcgac aaaatccctg ctgtcgccaa aagaaaaaac
    14401 caagtcgccg caatcaataa tgttcaggcg ttcgcgcaca tcaaatgtcc atggaaacct
    14461 gcggtgctcc caagcgaggt tgacggaggc gcgccggatg gcttcaggac cgaaacgcgc
    14521 gccggaacgc cctgaaaccg ccatatcata aggcacgccg gtaataaccc aatcggcatg
    14581 actttcatac ggcataaaat taagcggcag gcgcaaaaac ccgaaattat tggaaacgag
    14641 ggagttgtcg gtttgtcctg ccagtgtgct gtattgcatc gtaatgattc cttgtaattg
    14701 gtttcaatcg gtcgtgatga ttggtgtttg agtaagaaaa tcgggcttca gacgacatat
    14761 ccgatgcctt gatgcgtcta ttcgtcttcc aaataggtat aaccattaag ccccgcttcg
    14821 agttctttta agaaagacat agcctgcgag gcaggaaggt ctgaatgttc gatttgttcg
    14881 cgatagcgtt tcatcagctc tttcggatct tgataaacgt attcgagcat atcggcaacg
    14941 gtgtttcctt catcgtaatc gatgacggta aattgtccgt cttcccctac aacaacatcg
    15001 gcagtggcag tgtcgccgaa aagattgtgc atattgccga gtatttcctg atatgctccc
    15061 accataaaaa agcctaaaag cggcggctct tcttcgggat aatcaggcat aggcatcgta
    15121 ccggcgatgc cgtctccgtc gatgtagtgg tcaatcgtac cgtctgaatc gcaggtaatg
    15181 tccaacaaca cggcgcggcg cgcaatcggt tcattcaaac cggtaatggg acaaacaggg
    15241 aaaagttgat ctatgcccca agcatcgggc aaagattgga agagtgagaa attgacatac
    15301 agcttatcgg caaaacgttc ttgcaattcg tcaataatgg ttcggtgaga ccggtgtttt
    15361 tcattaaaca attcgccgac ttcatgacag atatttaaat acagttgctc cgcccacgca
    15421 cgttgcgcca aactcaacag cccgacatta tactgattat gcacatcggc aagatcaaac
    15481 tgcccttcgt gtatccagct gcgtaaggaa cgtttttccc gcgaggcgga aatatccgtc
    15541 caagtttccc acatactgtg caacacacgc ggtgcttcgg gcgatggcgc atccagccgg
    15601 cgcggtttgt aacgttcaac gcctataaca ttagcaacca aaacggcgtg atgtgcggta
    15661 atgccgcgcc cgctctcggt aatgattgtc ggatgcggca gcccgtgttc gagacaagcc
    15721 tggctgatgc cccatacgac tgtggaggca tattcgttga ggctgtaatt aacggaacaa
    15781 tccgattgtg tgcggtttcc ttcgtaatcc acgccaagcc cgccgcctac atcaaaacag
    15841 cggatattta cccccagttt gtgcaactca acataaaacc gagccgattc gtgtacacct
    15901 gtggcaacat cacggatgtt cccaagctgc gagcctaaat ggaaatgcaa aagctgcagg
    15961 cagtccagcc tgtttttttg tttcaaaata tcgaccagtt gcaaaacttg ggaagccgac
    16021 aagccgaatt ttgatttttc cccacccgaa gactgccatt ttcccgaacc ttgggaagcc
    16081 agtctggcgc gcacacccaa acggggcttg atgccgagtt tttccgcctc ttccaatacc
    16141 atttgtattt cggacagctt ctcaatcacc aaataaacct gatgccccag tttttcgccc
    16201 atcaaggcga aacggatata ttcacggtct ttatagccgt tgcagacgat taatgtttgc
    16261 cgggtgccgg cgtgtgccaa aaccgccatc agttcggctt tagaaccagc ttccaaacca
    16321 tgcggttgtc cgcttgacat aagcgattcg atgacgcggc ggtgttggtt gaccttgata
    16381 gggtaaacca aacaataacc gcccttatag ccgcactctt cccgtgccgt ctgaaaggcg
    16441 cggttaatgt cgcggaggcg gtgttcgagg atttgcggaa aacaaaacaa aacaggcagg
    16501 cgcgcctgat gtttttgttg cacggcttca gtcagttttt gcagtgaaac agtttgattg
    16561 tgttgcgagg gattggggcg gacgatgatt tcgccggaat cgtcaacatc ataataacct
    16621 atgccccaat gattaatgtt gcacacttca cggatggtaa ggataggcat aataaacctg
    16681 ctccgtctgt cgtgttgaaa aggaatgatt ataacaaatc agcgtgaaat gtcatttttt
    16741 taataagaaa agcctgcctc atacctgatg aggaacaggc aaaatgccgt ctgaacgctt
    16801 cagacggcat tttggttcat ctttccatca aaggagtcag cgatcgagct gctctttgat
    16861 gattttcagg tcggggtaag acaacacgat gtcgtattcg cggccgtctt tataggcttc
    16921 cacttccagc acaggcttac cccaatggtc gtcggcatcg acatcgtgaa cctgataacc
    16981 gcgctgttcc aacattttca cagcttttac gcggttctgt tcaaaattgg gatcactgta
    17041 aatctgacgc tcggcagagt cgctggcaaa tgcggttgcg gcactcaggg aaacaacggc
    17101 agccaataac agttttttca ttttcagtcc tttctttatc ggttgattga ataagatgtg
    17161 tttttcaatg ccgccattaa aacacagcaa aattaggttt gaattagagg gaagtcaaga
    17221 agcgtaaatg ccgtctgaaa aaaacagagc cgtcaaacgg ctccgttttc cttatgcttc
    17281 tttggtttca gccgcctttt ggcgcaggcg caggctcaat tcacgcaact gcttgtcgtc
    17341 cacgctgttg ggcgcgttgg tcagcaggca ttgggcacgt tgtgttttcg ggaaggcaat
    17401 cacgtcgcgg atagattcgg cgccggtcat cagggtaacc aaacggtcga ggccgaatgc
    17461 aaggccgccg tgaggaggcg caccgaattt caggttgtcc aagaggaagc cgaatttctc
    17521 ttgttgctct tcagggctga ttttcagcgc ggcaaacact ttctcttgta cgtctgcacg
    17581 gtggatacgg atagagccgc cgccgatttc ccagccgttc aataccatgt cgtaggcacg
    17641 tgccaaacaa tttgccgggt cggaaaccat caggtcttca tgaccttctt ttggcgcagt
    17701 aaacggatgg tgtacggcaa cgtagcggtc ggcttcttcg tcgtattcaa acattgggaa
    17761 gtcgacaacc cacaaaggtt tccattcgtc tgtgaaatag ccgttttccg cgccgtgttc
    17821 caagccgact ttgatacgca atgcgccgat ggcttcgttc acgactttgg ctttgtccgc
    17881 accgaagaag atgatgtcgc cgttttccgc gccggtacgc gcaatgattt ctttcagggc
    17941 attctcagac aggaatttta cgattggaga ttgcaggccg ctgtcttcgc cgtttgagag
    18001 gttgcccaca tcgtttactt tgatgtatgc cagacctttc gcgccgtaga tgccgacaaa
    18061 tttagtgtat tcgtcgattt ctttgcggct gaattttgcg ccgttcggta cgcgcagggc
    18121 gactacacgg ccgcctttca tatctgccgc gccacggaag actttgaatt cttccgtttt
    18181 catcaggtcg gtcaactcgg taaatttcaa gttgatacgc atatccggtt tgtcagagcc
    18241 gtagtagaac atggcttcgg cgtaaggcat acgcgggaag tcgcctaaat ctacgtttaa
    18301 agcatctttg aagacttgtt tcgccatacc ttcggtgatg tccataattt catcctcgtt
    18361 caagaacgag gtttccaagt cgatttgagt gaattcaggc tgacggtcgg cacgcaagtc
    18421 ttcgtcacgg aaacatttgg taatttgata gtaacggtcg aaaccggcca ccatcaacag
    18481 ttgcttaaat aattgcggtg attgcggcag cgcgaaaaac tcgcccggat gaacgcggct
    18541 cggcacgagg tagtcgcgcg cgccttccgg agtggagcgg gtcagcatcg gcgtttcgat
    18601 gtcgatgaag ccttgcgcgt ccagataacg gcgaacgccc atagcgactt gataacgcag
    18661 gcgcaggttg cgttgcatca ccggacggcg caagtcgata acgcggttgg tcaggcgaac
    18721 gttttcgctg atgttttcat cgtcgatttg gaacggcggc gtggcggcgg cgttcaagac
    18781 ttcgatttct ttggcaagga tttcgatttt gccggaaatc attttgtcgt tggtcgtacc
    18841 ttcgggacgg ttgcgtacgc ggccggtaat gctcaaaacg tattcgttgc gagcggaatc
    18901 ggcagcggca aacgcttcgg gcgtgtcggg gtcaatcacg acttggacga tgccttcgcg
    18961 gtcgcgcagg tcgataaaaa tcacaccgcc gtggtcgcgc cgacggtgta cccagccttt
    19021 gacggtaacg gtttggtcta agtattgctc actgatcaga ccgcaatagt tggtacgcat
    19081 aaaatcacct tttattgatt taaactgaaa acagaaaatg ccgtctgaac ggcggcttta
    19141 ttgttgttcg ggcaaatccg ccttttcaga cggcataggt cctgccaatg ttttgacggg
    19201 caggtcgtca gggatgacca tacccagcga aatcacatat ttcaacgctt cgtccacgct
    19261 catatcgagt tcgcgcacat cgcttttctt taccataata tagtaaccgc cggtcggatt
    19321 cggcgtggtc ggaacataca cggaaagata atcgccgtcc ttcggcaatg cggccttaac
    19381 cgcattcgac acctgaccgg acacgaatgc gattgtccaa atacccgatt ggggaaacgg
    19441 cacgagtact ggtgttttaa acgaacggct gctgtcggac agcaacgatt cggatacttt
    19501 tttcacactc gaatagatgg acttcacaac cggaatccgc cccaacaagc tgtcccacgc
    19561 ggcaagaatc tgccggccca atacgtttgc ggcaaacaat ccggttacaa acaatacggc
    19621 aatggcaacg ataacgccca gccccgggat attaaacccc aaaacatatt gcggccgcca
    19681 ttgcttcggc agcaggttga cgagctgatc ggacgcggaa acgatatagg aaaccaccca
    19741 aaccgttacc gcaatcggca gccagaccaa aatgcccgta atcagatatt tttttaacgc
    19801 cttggcagct ttaccgcctt cggccgcagg ttccgtcatc ttgcttgatt ccgacaaagt
    19861 ccgtacaaac cgcacattat acgcgtttgc ccggattcaa acgaaatttt tatcccgccc
    19921 cgccaaaccg ccggcggctt cagacggcac ggcaacttga tataccgtct gaacacgcgg
    19981 ttcagatgcc gtccaagtcg ttgaacatca acccgatacc gataccgttc tgcttgtggt
    20041 tgtagtcgat cagactctcg ccgtaaccgt ggaatccgcg taccacgcct ttgagtttgc
    20101 ccttaatcgg aaacgtgtag gcggcttcaa tcgcgccgta gcccgttttg gggttgtagc
    20161 gcaatacgga atacacattc tgcctgtcgt tcaggcggta ctgcagcttc acgtcgccat
    20221 accccatata gtcggcaata tcgggattgt cgtttttatc gccgctctga tcgaacgcac
    20281 gcacccacac gcgcggaatc accgtcaatt tgccccattc catgcctgcc atggcataaa
    20341 tcctgttcca cgaacgcgat tcgggacggc tctgtccgtt ggactggtgg acaaaacctg
    20401 caccgagcat acgcagcctg ccgccgaacg gcaaatctgc cttcacaggc tgggtcagga
    20461 aaatttcagg tttgtaatcc gtattgcgga acggcgcgga tttcctgcct tggttgtaaa
    20521 tctgccaatc ggatctttgg gtgtagccga accacagatc cgcgcgggtt ttaaacaaat
    20581 cttcggcaat tttgcttttg aacgaaacct gcaatttggt ttccgcacgt ttctgctgtc
    20641 cgaatttttc ctgtacagtc gtaccgcgcg tcggcgaacc cggggcatag ttgggcgaat
    20701 tgttgtacca gagcggcata aggtacatcg gattgtgttc gcgtacgccc aacagcccgc
    20761 gcaaatcgtt tttgtccaag tcgtacatca ggctcaaagg cgtatagatg tcggcggttt
    20821 cgcccgcact gtcggcagga agcgcatccc cgcctttttc aacaacaatg accgcctcgc
    20881 ccttatccag gctgctgcgg acggtttccg tcagattgag tacggctttc gactcctgcc
    20941 cttcctaccc tgccgaagac ggaagctgtg ccgcaaaaat cctgtcgtaa cacgccaaac
    21001 gcgtaacatt gtccgtcaaa gcggcgcatt gcagcgcggt ctctccaaaa gcggatgcca
    21061 tcggcaacag tcctgtcaaa agaatatagc gcatattccg tgtattcatc tccgccccca
    21121 ttgtcggcat attggttttc aaacggcatt ttatagcgga ttcggataaa aaccgcaccc
    21181 tttccgccat ttcgggattt tgcccccgca atacagaaaa ccccgaaacc gtcgggcttc
    21241 agggttttcc gcttatcgcg tatcaaccgc cttggcggtt ttgcaaaaat caagccagtg
    21301 cttttacttt tgcagacaga cggcttttgt ggcgtgccgc tttgtttttg tggaacacgc
    21361 ccttgtcggc gatgcggtcg atgactttga cggactcttg gtaaaccgct tgtgcggcag
    21421 ctttatcgcc tgcttcgact gctttcaata cttttttcac tgcagtgcgg aatgcggtac
    21481 gcaggctagc gttgtgggcg cgttgtttga cggactggcg ggcacgtttg cgtgcttgtg
    21541 cgctgtttgc catattggaa tctcctgaaa gaaaaataaa ttctgtaaac gcgcaatttt
    21601 aaagggggtt tacattatat gcaagccttt tctctctatc cgcccgtcgg acaccctgac
    21661 agcgcaaaaa aacggcaaaa tcgtgcggac gttttctccc tcttttgaaa acaaggtaat
    21721 tttttaggaa aatcaggtca atatcgcttt gagtttgcac aaatttactt tacaatgccc
    21781 aaaccttgcg ccggggtgtt tatggggcgc ggggttttct ttttttccaa cctctttcat
    21841 caggaatctg cccgtatgaa aaaatccgta ttagccgttt tggccgcgct gtctctggca
    21901 gcctgcggcg gcagcgaaaa aaacgccgtg caacctcaag cagacgctgc gtctgctgcc
    21961 aatgccgaag ccgctgccac cgatactctg aacatctaca actggtcgaa ctatgttgat
    22021 gagagtacgg tcgaagactt taaaaaagcc aacaatctga agctgactta cgacttgtac
    22081 gaaaacaatg aaacgctgga agccaaaatg ctgaccggca aatccggtta cgatttggtt
    22141 gtgccgggca tcgccttcct gccgcgccaa atcgaggcgg gcgcgtatca aaaagtcaac
    22201 aaagacctga ttcccaacta taaaaacatc gatcccgaac tcttgaaaat gctggaaacc
    22261 gccgacccgg gcaaccagta tgccgtcccc tatttctccg gcgtgaacac gattgcgatt
    22321 acggcgaaag gcaaagagct tttaggcggc aagctgcccg aaaacggctg ggatttgctg
    22381 ttcaaacccg aatacaccca caagctgaaa tcctgcggca tcgccctgtg ggacaccccg
    22441 agcgaaatgt tcccgatttt gctgaactac ttgggcaaag accccaaagg ctcgaatcct
    22501 gaagatttga aggcggcggc ggaagtgttg aagtctatcc gtccggatgt caaacgtttc
    22561 agcccgtcca tcatcgacga gctggcgcgc ggcgacatct gcctggcggc aggtaacggc
    22621 ggcgacttga acttggcgaa agcgcgttct gaagaagtga aaaacaatgt cggcatcgaa
    22681 gtgttgacgc cgaaaggtat gggattctgg attgagtctt ggctgattcc cgccgatgcg
    22741 aaaaacgtcg ccaatgccca caaatacatc aactacacgc tcgaccccga aatcgcggcg
    22801 aaaaacggta tcgccgtaac cttcgcgccg gccagcaaac ctgcgcgcga aaaaatgcct
    22861 gccgagctgg tgaacacccg ttccatcttc ccgaacgagc aggatatgaa agacggtttc
    22921 gtgatgccgc aaatgagtac ggatgcgaaa aaactgtcgg tcagcctgtg gcagaaaatc
    22981 aaagtcggca ccaactgatt tgaagcatta aaaatgccgt ccgaacatcg ttcggacggc
    23041 attttatatt ggattg
//
LOCUS       DAXIFS010000011        22448 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.011, whole genome shotgun sequence.
ACCESSION   DAXIFS010000011 DAXIFS010000000
VERSION     DAXIFS010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22448
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.011"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..604
                     /locus_tag="ACFOCA_000360"
     CDS             <1..604
                     /locus_tag="ACFOCA_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6987130.1"
                     /translation="KIGISDVSNFEGRMRHLENNGYANVAGLERILAVKTDNYKEKEN
                     LLHEIFSKSRIGDTELFAVDENLVKRLFLSLRGEIVFPKNETAESEFEKSVHERRQEG
                     NAGSGRKQLLDLVRRGHREYPYALPRLLAGAASYKPKKSKIRLFKEAYFGKSGTRLTD
                     EIADGIHIYTCFSRADLEKAYSEYLELFKSESDAEGRKPQ"
     gene            641..1402
                     /locus_tag="ACFOCA_000361"
     CDS             641..1402
                     /locus_tag="ACFOCA_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2314 domain-containing protein"
                     /protein_id="HFC6987131.1"
                     /translation="MMGDSVIYYVEQADKPVNRAGERARKTFKYFWRELFWERRRIIP
                     ALDFAMVKAPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCV
                     PVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEK
                     EHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLE
                     YGANPASKTSEGYTALDFARLAGWQNVADLLEPRH"
     gene            1457..1798
                     /gene="fdx"
                     /locus_tag="ACFOCA_000362"
     CDS             1457..1798
                     /gene="fdx"
                     /locus_tag="ACFOCA_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009425374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HFC6987132.1"
                     /translation="MPKITVLPHTTLCPEGAVIEDAPEGKTVLDVLLDHDIEVDHACE
                     KSCACTTCHVIIRKGFDSLEEPTELEEDLLDQAWGLEADSRLSCQAVVAGEDLIVEIP
                     KYTINHAREEH"
     gene            complement(2085..2672)
                     /locus_tag="ACFOCA_000363"
     CDS             complement(2085..2672)
                     /locus_tag="ACFOCA_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HFC6987133.1"
                     /translation="MNNMFAAKLSKLVYTASDHPDSLSEMEEFDRLILLIRKLYQILD
                     GQHILSRVTVCLHYRSRRGLIALDKAAAGCDAAMLRAQRWRIYTQIAERLAGSGGGFT
                     VTAESVSAACPELEGRYLELVRRTATSFGFVQVQEYPAGGQEETQAVPDAASDHSVRK
                     PIKINIEAKVERYPAYRPTAALKVTRRRFFRLQNR"
     gene            2885..3082
                     /gene="iscX"
                     /locus_tag="ACFOCA_000364"
     CDS             2885..3082
                     /gene="iscX"
                     /locus_tag="ACFOCA_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HFC6987134.1"
                     /translation="MKWTDTRRIAEELYDLHGETIDPRTVRFTQLRDLIMALPEFDDD
                     PARCGERILEAVQQAWIDEAE"
     gene            complement(3150..3551)
                     /locus_tag="ACFOCA_000365"
     CDS             complement(3150..3551)
                     /locus_tag="ACFOCA_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6987135.1"
                     /translation="MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKV
                     KNSKTIDIGDIIDLTLNSLPYKIKVKGLNHQRRPASEARLLYEEDAKTATLREERKQL
                     DQFSRITSAYPDGRPTKRDRRQLDRLKKGDW"
     gene            3762..4721
                     /locus_tag="ACFOCA_000366"
     CDS             3762..4721
                     /locus_tag="ACFOCA_000366"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFC6987136.1"
                     /translation="MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIHRLQKKS
                     NDLTKSIFSKLTPAQISQVSRHPQRPYTLDYIEALFTDFEELHGDRHFADDYAIVGGL
                     ARFNGQSVMVVGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKTAEKFGLPVMTFIDT
                     PGAYPGIGAEERGQSEAIGKNLYELTRLRVPVLCTVIGEGGSGGALAVAVGDYVNMLQ
                     YSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQRLDLVDTVIKEPLGGAHRDF
                     GQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRIMAYGKFSEQ"
     gene            4789..6099
                     /gene="tilS"
                     /locus_tag="ACFOCA_000367"
     CDS             4789..6099
                     /gene="tilS"
                     /locus_tag="ACFOCA_000367"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFC6987137.1"
                     /translation="MLTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVRA
                     GKRAGFVPEALHIHHGLSPRADDWADFCQNYCDMLGVGLETVKVCVEKNGLGIEAAAR
                     QKRYAAFAEKGFDILALAHHRDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWR
                     PLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGRHVLN
                     NVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSPRRKTHILRHFLKENGIPVP
                     NQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFRQEKTDKLRFLKDRQISGNLR
                     EILTGQGFVLKRHPFGLPEHLLEQDGILRTVAASDTLAVGGIHKDVKKILQGKRVLPV
                     LRPIWPLVADSGNRPLALANCCADFQYSVSDGILPVHPDFPILF"
     gene            6173..6958
                     /locus_tag="ACFOCA_000368"
     CDS             6173..6958
                     /locus_tag="ACFOCA_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HFC6987138.1"
                     /translation="MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQ
                     SGGMPVGVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDI
                     PLGGTLPDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGM
                     GAHFLSGIYPQADLEIWLASYKGRVFATALREEKQVVLYGEDLCEPTAWVFGNEGAGV
                     GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSAY"
     gene            6968..7165
                     /locus_tag="ACFOCA_000369"
     CDS             6968..7165
                     /locus_tag="ACFOCA_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987139.1"
                     /translation="MPSEKIYYGVLIFLCIASMLLSPFFYAGALKPKKAALRKDGQWK
                     LILLSNTVAAAVLFWMWWKWF"
     gene            7427..7780
                     /locus_tag="ACFOCA_000370"
     CDS             7427..7780
                     /locus_tag="ACFOCA_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987140.1"
                     /translation="MKNCKFFYDPTRAIYDSGADYLTREKHRLVVIANSAWGLLLNLS
                     CYYDEVLEKRKIPFGKQEIDDDMDKVSAHKRKFKDISEIKVGDGWEYPFNYEQGMKEL
                     DEVLLKYIPFFEEER"
     gene            7792..8097
                     /locus_tag="ACFOCA_000371"
     CDS             7792..8097
                     /locus_tag="ACFOCA_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987141.1"
                     /translation="MRVSKIIGSMLLVTAVQTVFSANVYACRHNGKTSYSQTPGKHCT
                     NAGLGRDLVYSSVRPAVKDRAEDAGADDHLDSVRDEHVQNPRENTHKDASNTGAKTH"
     gene            8159..9535
                     /gene="mpl"
                     /locus_tag="ACFOCA_000372"
     CDS             8159..9535
                     /gene="mpl"
                     /locus_tag="ACFOCA_000372"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HFC6987142.1"
                     /translation="MKHIHIIGIGGTFMGGIAAIAKEAGFEVSGCDAKMYPPMSTQLE
                     ALGIGVHEGFDAAQLEEFKADVYVIGNVAKRGMDVVEAILNRGLPYISGPQWLAENVL
                     HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPN
                     SQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYL
                     VRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGSFDVLLDGK
                     TAGRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKNVKRRMEIKGTANGI
                     TVYDDFAHHPTAIETTIQGLRQRIGGARILAVLEPRSNTMKLGTMKSALPVSLKEADQ
                     VFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNGGFGGIH
                     GKLLDALR"
     gene            9742..10794
                     /gene="bioB"
                     /locus_tag="ACFOCA_000373"
     CDS             9742..10794
                     /gene="bioB"
                     /locus_tag="ACFOCA_000373"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HFC6987143.1"
                     /translation="MTVSPVALRRKTECKPHPTARYWKKCDVEALFGLPFLELVHQAA
                     EVHRQNFNPREIQLSTLLSIKTGGCPEDCAYCPQSAHHNTNLGKEQMMDVDEIVEKAK
                     IAKSRGASRFCMGAAWRGPKPKDVETVSAIIKAVKGLGMETCGTFGMLEEGMAEDLKE
                     AGLDYYNHNLDTDPDRYNDIIHTRRHEDRMDTLGKVRNAGLKVCCGGIVGMNETRAER
                     AGLIASLANLDPQPESVPINRLVKVEGTPLADAEDLDWTEFVRTIAVARITMPQSYVR
                     LSAGRSNMPEAMQAMCFMAGANSIFYGDKLLTTGNPDEDGDRILMEKLNLYPLQFELE
                     GEVAEVEKASGIKVDY"
     gene            complement(10941..11270)
                     /locus_tag="ACFOCA_000374"
     CDS             complement(10941..11270)
                     /locus_tag="ACFOCA_000374"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6987144.1"
                     /translation="MFYGENRGNVVEFARLAVDSGADVVFGQGPHVTRAVELYRDRFI
                     SYSGGNFATYGAINTSGISGIAPIFKIITNKQGKFISGTIIPITQADDKIPKIDPEKP
                     LSGGLFI"
     gene            11178..11387
                     /locus_tag="ACFOCA_000375"
     CDS             11178..11387
                     /locus_tag="ACFOCA_000375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987145.1"
                     /translation="MRPLPEYDIRAGIDGKPCKLDDVAPVFPIEDFGIERQVFRLFPF
                     PPPWNITMTMSAFCLVLVIRFLTLA"
     gene            complement(11630..11869)
                     /locus_tag="ACFOCA_000376"
     CDS             complement(11630..11869)
                     /locus_tag="ACFOCA_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987146.1"
                     /translation="MGGCTFFRRTAFVKQRAFEVADGNVRVLQGRFDVFQNIGIGQVI
                     DRIIAAEHNVAHADNGNGIGCLFVRRILSVHIAGI"
     gene            11856..12089
                     /locus_tag="ACFOCA_000377"
     CDS             11856..12089
                     /locus_tag="ACFOCA_000377"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6987147.1"
                     /translation="MQPPKICYAFRTPSAYGQYLADAGFDYLSFANNHSNDFGAQGIT
                     ATAASGSSFTYSIALKPLPITRPKLRKIPPSPR"
     gene            complement(12152..14011)
                     /gene="ilvD"
                     /locus_tag="ACFOCA_000378"
     CDS             complement(12152..14011)
                     /gene="ilvD"
                     /locus_tag="ACFOCA_000378"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFC6987148.1"
                     /translation="MPEYRSKTSTHGRNMAGARALWRATGVMETDFGKPIIAVANSFT
                     QFVPGHVHLHNMGQLVAREIEKAGAIAKEFNTIAIDDGIAMGHSGMLYSLPSRDLIAD
                     SIEYMVNAHCADALVCISNCDKITPGMLIAAMRLNIPTIFVSGGPMEAGKVIGVANIQ
                     PERRLDLIDAMIESADDNVSNRQVEEVEQNACPTCGSCSGMFTANSMNCLTEALGLSL
                     PGNGSYLATHVGRKELFLEAGRMIVEITKRYYEQNDETVLPRSIATKKAFENAMTMDI
                     AMGGSTNTILHLLAVANEAGVDFKMADIDRLSRVVPCICKTAPNNHDYYMEDVHRAGG
                     IFAILKELDKAGKLHTDVHTIHAPTLKDAIEKWDITNPENTRAIERFKAAPGGVRTTQ
                     AFSQNRMWKTLDLDREKGCIRDVAHAYSQDGGLAVLFGNIAERGCVVKTAGVDESILK
                     FTGRARVFESQEDAVEGILGNQIVAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLG
                     KACALLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVHEGDTVEIDIPNRSIHLAISDE
                     ELAARRAEMEARGSKAWKPENRDRYVSAALRAYGAMATSADKGAVRDVAQIER"
     gene            complement(14184..15953)
                     /gene="cysI"
                     /locus_tag="ACFOCA_000379"
     CDS             complement(14184..15953)
                     /gene="cysI"
                     /locus_tag="ACFOCA_000379"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HFC6987149.1"
                     /translation="MTVQTKTKGLAWQEKPLSDNERLKTESNFLRGTILDDLKDPLTG
                     GFKGDNFQLIRFHGMYEQDDRDIRAERAEAKLEPLKFMLLRCRLPGGIIKPSQWIELD
                     KFARENSHYRSIRLTNRQTFQFHGVPKAKLQTMHRLLHKLGLDSIATAADMNRNVLCT
                     SNPIESELHRQAYEYAKKISEHLLPRTRGYLDVWVDGKKVQSSDDFLQEDEPILGKTY
                     LPRKFKTAVVIPPLNDVDCYGNDLDFVAVSDGNGQLAGFNVLAGGGLSMEHGNTKTYP
                     NISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERR
                     MGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAK
                     IHKGDFRITANQNLIVANVAEADKAKIEELARTYGLIRNDVSKLRENAMSCVSFPTCP
                     LAMAEAERVLPDFIGELDKIMAKHGTSDDYIVTRITGCPNGCGRAMLAEIGLVGKAVG
                     RYNLHIGGDREGVRIPRLYKENITLPEILSELDDLIGKWAAGRDTDEGFGDFAIRTGI
                     VKPVLDAPVDFWDASKAVPIARA"
     gene            complement(15980..17794)
                     /locus_tag="ACFOCA_000380"
     CDS             complement(15980..17794)
                     /locus_tag="ACFOCA_000380"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     flavoprotein subunit"
                     /protein_id="HFC6987150.1"
                     /translation="MSEHDMQNTNPPLPPLPPEITQLLSGLDAAQWAWLSGYAWAKAG
                     NGASAGLPALQTALPAAEPFSVTVLSASQTGNAKSVADKASDSLEAAGIQVRRAELKD
                     YKAKNIADERRLLLVTSTQGEGEPPEEAVVLHKLLNGKKAPKLDKLQFAVLGLGDSSY
                     PNFCRAGKDFDRRFEELGAKRLLERVDADLDFAAAADGWTGRIVARLKEEAAKNRATP
                     APQTTPPAGLQTAPDGRYCKADPFPAALLANQKITARQSDKDVRHIEIDLSGSDLHYL
                     PGDALGVWFDNDPALVREILDLLGIDPATEIQAGGKTLPVASALLSHFELTQNTPAFV
                     KGYAPFADDDELDRIAADNAVLQGFVQSTPIADVLHRFPAKLTAEQFAGLLRPLAPRL
                     YSISSSQAEVGDEVHLTVGAVRFEHEGRARAGGASGFLADRLEEDGTVRVFVERNDGF
                     RLPEDSRKPIVMIGSGTGVAPFRAFVQQRAAENAEGKNWLIFGNPHFARDFLYQTEWQ
                     QFAKDGFLHRYDFAWSRDQEEKIYVQDKIREQAEGLWQWLQEGAHIYVCGDAAKMAKD
                     VEAALLDVIIGAGHLDEEGAEEYLDMLREEKRYQRDVY"
     gene            complement(17791..19077)
                     /locus_tag="ACFOCA_000381"
     CDS             complement(17791..19077)
                     /locus_tag="ACFOCA_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit 1"
                     /protein_id="HFC6987151.1"
                     /translation="MTAQHQAPLRFITAGSVDDGKSTLIGRLLYDSKALLSDQIKTLE
                     SGKSKGLKETIDFSILTDGLEAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRN
                     MVTGASTASAAVVLVDASQLDFGAQPLQLLPQTKRHSAILRQLNCPHIVVAVNKMDLL
                     DYSEDKFNAIVEAYRRLAEQLGLKDVHFVPVSALLGDNLVYPGGNMPWYRGEPLLVIL
                     ENLPGADETGRSAADFYFPVQLVVRQDADKADDFRGYQGRIERGSVAVGQTVRIEPNG
                     LTAEVSEIITPKGEVAQAFAGEAATLRLDRDIDVSRGDLFVDKNSPLAPQKHLEATLC
                     WFDERPLNTARKYLLKHGTQTVPAKVGEIESVLDVRTLEQEAGAESLKMNDIAKVRIN
                     LQKPVTATPYAENTAAGSFILIDEATYGTVAAGMIL"
     gene            complement(19116..20039)
                     /gene="cysD"
                     /locus_tag="ACFOCA_000382"
     CDS             complement(19116..20039)
                     /gene="cysD"
                     /locus_tag="ACFOCA_000382"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HFC6987152.1"
                     /translation="MTKTEPNNVQLDWLESESIHIIREVAAECENPALLFSGGKDSVV
                     LLALACKAFRLGSRPVKLPFPLVHIDTGHNYPEVIAFRDAQAAKLNARLIVGRVEDSI
                     AKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRDEEKARAKERIFSFRDEF
                     GQWDPKAQRPELWSLYNTRLHKGENMRVFPISNWTELDIWQYIARENLELPPIYYSHR
                     REVVRRRGLLVPVTPLTPKMPSETSEILDVRFRTVGDISCTCPVESTASTPAEIIRET
                     AVADISERSATRLDDQASEAAMEKRKKEGYF"
     gene            complement(20077..20811)
                     /locus_tag="ACFOCA_000383"
     CDS             complement(20077..20811)
                     /locus_tag="ACFOCA_000383"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HFC6987153.1"
                     /translation="MKIFKPALWKIPPIENGSETALAEKTETLKQRLHRIAGSHRDAR
                     FASSLAAEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQP
                     IREDALHYVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQSATR
                     TELPFAEYDAGRGIDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRP
                     VKAGEDIRAGRWWWEDKNSKECGLHK"
     gene            complement(20827..22278)
                     /gene="cysG"
                     /locus_tag="ACFOCA_000384"
     CDS             complement(20827..22278)
                     /gene="cysG"
                     /locus_tag="ACFOCA_000384"
                     /EC_number="1.3.1.76"
                     /EC_number="2.1.1.107"
                     /EC_number="4.99.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0043115 - precorrin-2 dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051266 - sirohydrochlorin ferrochelatase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siroheme synthase CysG"
                     /protein_id="HFC6987154.1"
                     /translation="MNYFPIFANLAGRPVLVVGGGAVAARKISLLLKAGAEVRVAAKH
                     LNAELSALAAENKILWLAEEFRAEHIRTVFLIIAASSDQALNRRVFHLAESCQKPVNV
                     VDDRDHCSFIFPSVIDRNPVQIAVSSSGSAPVLARLLRERLEALLPPSLGDMAEISGR
                     WRDAVKAKLKSVTERRRFWEKQFNGRFAALVKNQQTAQAEQELAKQLEQNYQGGFVSL
                     VGAGPGDAGLLTLKGLQEIQQADVVLYDALVSDGILSLVRRDAERIFVGKRARGGRTP
                     QEDTNALMVRLAREGRRVVRLKGGDPFVFGRGGEELETLARHQIPFSVVPGITAAVGA
                     TAYAGIPLTHRDYAQSAVFVTGHRKADAPDIEWQTLARSRQTLVIYMGALKAALIAER
                     LQQHGRSPDTPAAVISQGTLPAQKTATGTLANLSELAETAPNPALIVIGEVVGLHEKL
                     AWFGENAKKESNPAEHAYFALDGLGTGQEQQAA"
BASE COUNT         4854 a         5824 c         6455 g         5315 t
ORIGIN      
        1 taaaatcggc atttcggatg taagcaattt tgaaggcaga atgcgccatt tggaaaacaa
       61 cggctatgcg aacgttgccg gattggaacg catcctcgcc gtcaaaaccg acaattacaa
      121 agaaaaagaa aacctgctcc atgaaatttt cagcaaaagc aggataggcg ataccgaatt
      181 gttcgccgtg gacgaaaacc ttgtaaaacg tttgttttta tcgcttcgcg gcgaaatcgt
      241 gtttccgaaa aacgaaacgg cggaatcgga atttgaaaaa agcgtccacg aacgcaggca
      301 ggaagggaat gccgggtccg gccgcaaaca actgcttgat ttggtacggc gcggacaccg
      361 ggaataccct tacgcgctgc cccggctttt ggcgggcgcg gcatcctaca agccgaaaaa
      421 atcgaaaatc cgccttttta aagaagcata tttcggcaaa agcggcacga ggctgaccga
      481 cgaaattgca gacggcatcc atatttacac ctgtttttcg cgggcggatt tggaaaaagc
      541 ctattccgaa tatttggaac ttttcaaatc cgaatcggat gccgaaggca gaaagccgca
      601 gtaaggtgca aacagatacc gtacacgttg aggagcagat atgatgggcg attccgtcat
      661 ttattatgta gaacaggcag acaaaccggt aaaccgtgcc ggcgaacgcg cccgcaaaac
      721 attcaaatat ttttggcgcg agcttttttg ggaacgccgc cgcatcattc ccgccttaga
      781 ttttgccatg gtcaaagccc cttttttcca agacggcgaa gacggcgaaa tttgcgaaca
      841 tatgtggatc gacgatattt attttgacgg tctttacatt tatggcgtgc tgaacaatga
      901 acccggcgaa ctgaccaatg tcgaacaagg cgaaagcgtt tgcgttccgg ttgacgacat
      961 cagcgactgg atgttcgtgt gcaacggcat tccctacggc ggctttacca tacaggcaat
     1021 gcgtggacag atgacggaag aggagcgtac cgaacacgat gccgcatggg gaatcgattt
     1081 cggcgatccc gggcaggtat tgctggtgta tgaagaaaaa gaacatcccg aaaatctgga
     1141 agagcatccg atgtgccgga actgtattga cgattttcgg caacagttgt cccaaaatcc
     1201 ggattttctg catgagcagg acgaagacgg ctatacgccg cttcatcatg aagccatcgc
     1261 aggaaatgca cttatggttc aagccatgct tgaatacggc gcaaatcctg cctcaaagac
     1321 atcggaaggc tataccgccc tcgattttgc ccgcctggcg ggctggcaaa atgttgccga
     1381 cctgctcgaa ccgcgacatt aggcggacag ttttccgaaa acgaacacaa acacttttta
     1441 cagaaagaca ataaaaatgc ccaaaatcac cgtacttcca cacacgacat tatgccccga
     1501 aggcgcggtt atcgaagacg cgcccgaagg caaaaccgtc cttgacgtgc tgctcgacca
     1561 tgatatcgaa gtcgatcacg cctgcgaaaa atcctgcgcc tgcaccacct gccacgtcat
     1621 catccgcaaa ggtttcgaca gtttggaaga accgaccgaa ttggaagaag acctgctcga
     1681 ccaggcttgg ggtttggaag ccgattcacg cctgagttgt caggcggttg tcgccggcga
     1741 ggatttgatt gtggaaatcc ccaaatacac catcaaccac gcgcgcgaag aacactgaaa
     1801 acaggccgtc tgaagccggc acgcttcaga cggcattgtt gcgcggataa ggcgcaatcg
     1861 cccgaaaaca ggcgttcgta caggcggaac tttcgattct atagtgaatt aacaaaaatc
     1921 aggacaaggc ggcgagccgc agacagtacc aatagtacgg caaggcgagg caacgctgta
     1981 ccggtttaaa tttaattcac tatatattga tttttatcgg ttttctgacg gaacggattg
     2041 gtgcggcatc cgaggcggat tactcgggcg cgatgcacgg gtatttatcg gttttgcagc
     2101 cggaaaaacc gccggcgggt tactttcagg gcggcggtcg ggcggtatgc cggatagcgt
     2161 tccactttcg cttctatatt gattttgatt ggttttctga cggaatgatc cgatgcggca
     2221 tccgggacgg cttgtgtttc ttcctgcccg cctgccggat attcctgtac ttgcacgaaa
     2281 ccgaaagagg tggcggtgcg gcggacaagc tcgagatagc gtccttcaag ctccggacag
     2341 gcggcggaca cgctttctgc cgtaaccgtg aagccgccgc ccgacccggc aaggcgttcc
     2401 gcaatctgcg tgtagatgcg ccaacgttgg gcgcgcaaca ttgccgcatc gcaaccggca
     2461 gccgctttat ccaaggcaat cagaccgcgc ctgctccggt agtgaaggca aaccgttact
     2521 ctggagagga tatgttgccc gtccaatatt tgatacagtt tgcgtatcag cagaatcagg
     2581 cggtcaaact cctccatctc cgacagggaa tcaggatggt cggaagcggt ataaaccagt
     2641 ttggacaatt ttgcggcaaa catattgttc atcaatcttc cttgtcggtt gaaaccccgc
     2701 tcttcggggc ggtagaatca gatttgtttg ggagggacaa ctcctcccag atcaggacga
     2761 cacataggct ggtgcttgat gtgttgtccg gcgagttgaa acattcagcc atcctcaagg
     2821 tgcggcagtt ttgccgaaac atattctaca cggcttcaat gccggacgat aaaaggaaat
     2881 tcatatgaaa tggaccgaca cccggcgtat cgccgaagaa ctctatgacc tgcacggcga
     2941 aaccatcgat cccagaaccg tgcgctttac ccaactgcgc gacctgatta tggcattgcc
     3001 cgaatttgac gacgaccccg cccgttgcgg cgaacgcatc ctcgaagccg tgcagcaggc
     3061 atggatagac gaggcggaat aagtttcggg aatgccgtct gaaatgcggc ggtacgcggt
     3121 tcgtgcttct gtttgcagcg ggaatggttt taccagtctc cttttttcag cctgtccagt
     3181 tggcggcggt cgcgcttggt cggtctgccg tcgggatagg cggaagtgat gcggctgaat
     3241 tggtcgagct gtttgcgctc ttccctcaat gttgccgttt tcgcgtcctc ttcatacaga
     3301 agccgcgcct cggatgccgg gcggcgttgg tggttcaaac ctttaacctt gattttatag
     3361 ggaagggaat tgagcgtcag gtcgataata tcgccgatgt ctatggtttt actgtttttg
     3421 accttcgagc cgtttacttg aaccctaccc agttcgatgt gcttttgcgc aagggaacgg
     3481 gtcttgaaaa aacgtgccgc ccaaagccat ttgtccagcc gcatggcgga agaatcgtgc
     3541 ttgtctttca tacgattttg tttgaaataa ttgaatttgt ttcaagttta gcataagata
     3601 cgccgcctat aactagtata tatgcactaa tccactgttt tccatgctgt ccgaacacaa
     3661 aaagagggta tggaaaagcc gttttggaca ataaattaac tgcggaatat gcacaaatag
     3721 cgtatgatag cggcagaatc tgttgatgag agcttcattc tatgaaacct gtttttttgg
     3781 attttgaaca acccatagcc gaactgacca acaaaatcga tgagctgcgt ttcgtccaag
     3841 acgagtctgc cgtcgatatt tcggacgaaa tacaccgttt gcagaaaaaa agcaacgatt
     3901 tgaccaagtc tattttcagt aaacttacac ccgcccaaat ttcacaggtt tcccggcatc
     3961 cgcagcgtcc ctatactttg gattacattg aggcactgtt taccgatttt gaagaactgc
     4021 acggcgaccg ccactttgcc gacgattatg cgattgtcgg cggattggcg cgtttcaacg
     4081 gacaaagcgt gatggtcgtc gggcatcaga aagggcgcga caccaaagaa aaaatccgcc
     4141 gcaacttcgg tatgccccgt cctgaaggct accgcaaagc cctgcgcctg atgaagacgg
     4201 cagaaaaatt cggcttgccc gtcatgacct ttatcgatac gccgggcgcg tatcccggca
     4261 tcggcgcgga agaacgcggg cagtcggaag ccatcggcaa aaacctgtac gaactgacac
     4321 gcctgcgcgt tcctgttttg tgtaccgtca tcggcgaagg cggttcgggc ggtgcgttgg
     4381 cggtcgccgt aggcgattac gtcaatatgc tgcaatattc gacctattcc gttatttccc
     4441 ccgaaggctg cgcgtctatt ttgtggaaaa cggcggaaaa ggcggcggat gcggctcagg
     4501 ctttgggcat taccgctgac cggctgcaaa ggctggactt ggtcgatacc gtcatcaaag
     4561 aaccattggg cggtgcgcat cgggatttcg ggcaaaccat gaaaaacgta aaagccgttt
     4621 tggaaaaaca actgcacgaa gcgcaaagca tcccgcttgc cgatttgctt tcgcgccgtt
     4681 tcgaccgcat tatggcttac ggcaaatttt cggaacaata attcaggtag aacaagcagc
     4741 aagcagtttg tctgaaactg cttgcttttt ctttatcggg acggaaccgt gctgacttta
     4801 gatgcgtttg agcaatgctt gaaggattgt tttcctcaag gtctgaatgg aaaaaaaaca
     4861 gcggtggcat taagcggcgg cttggattcc gtggtcttgc tgcacctgct tgtccgcgct
     4921 gggaaacggg caggatttgt gccggaggca ttgcatatcc atcacggctt gagcccccgt
     4981 gccgacgatt gggcggattt ctgtcaaaac tattgcgata tgctaggggt ggggctggaa
     5041 acggttaagg tctgcgtgga aaaaaacggt ttgggcatcg aagcggcggc gcggcaaaag
     5101 cgttatgccg cgtttgccga aaaaggcttt gacattttgg cgttggcgca ccacagggac
     5161 gatcaaatcg aaacctttat gctggcggtc gcgcgcggcg gcggtttgcg cgctttggcg
     5221 gctatgcccg ccgtccgccc ttttggggaa aaaggcatca tttggcggcc cttgctgcct
     5281 ttttcgcgcc aagatatatg ggattatgcc caaaaacacg gtttgccgaa tatcgaggat
     5341 gaaagcaata ccgatacggc ttatttgcga aaccgcttcc ggcaccgtat tttgcccgaa
     5401 ctttcggcgc agattcccca tttcgggcga catgtgctga acaatgtccg cgctttgcag
     5461 gaagatttgg ctttgttgga cgaggtcgtc gttcaggact gccgttgggt ttgcggggcc
     5521 ggttatttcg atacggcgcg gtggctgacg ttttccccgc gccggaaaac ccatattttg
     5581 cggcattttc tgaaggaaaa cggcattccc gtgccgaatc agaatgccct tgccgacatt
     5641 gcccgggttt tgacggaggc aaaaaccgga cgttggaact tgcaaggctt tgaattgcat
     5701 cattatgcag gcaggctgtt tgtgttccga caggaaaaaa cggataaact gcggtttttg
     5761 aaagacaggc agataagcgg aaatttaagg gaaatattga cggggcaggg atttgtttta
     5821 aaacgtcatc cgtttgggct tcctgagcat cttttggagc aggacggaat tttgaggacg
     5881 gtagcggcat cggatacgtt ggctgtcggc ggcatccata aggatgtgaa aaaaatcctt
     5941 caggggaaac gggttttgcc tgtcctgcgc ccaatttggc cgcttgttgc cgacagcgga
     6001 aaccgtccat tggcgttggc aaactgttgt gcggatttcc aatattcggt ttcagacggc
     6061 attttgcccg tccatcctga ctttcccatt ttattttgat aatatcgcaa acagatttcg
     6121 gcggcattca gtcgggtatt gtccggttgc atatttctaa aaggcttgtg aagtgaaaca
     6181 catcagttcg accaataatg aacacatccg gcacctgcac cgcctgttgt cgcaaggaaa
     6241 gttcagacgg cagtatgccc aaaccgtttt ggagggcgtg cacctgcttc aggttttcct
     6301 gcaatccggc gggatgccgg tcggggtata tattcccgag ggcaaaatgc cgtctgaaga
     6361 aatccgcagg ctgagggcgg ttgtgccgga aggcaggatt ttttccgttt cagacggcat
     6421 attgaaaaaa atcagcagct tgagttgtgc agacgatata cttgcactga ttgatatccc
     6481 attgggcgga accttgccgg acaaaggcga ctgtgtggtt ttggacggcg tgcaagatcc
     6541 gggcaatgtc ggcaccgtct tacggagtgc ggcggcggca ggggtaggta cggtcgtttt
     6601 gggcaggggt tgcgcggacg cgtggtcgcc caaggtattg cgcgcgggga tgggcgcgca
     6661 tttcttgtcg ggcatttatc cgcaggcgga tttggaaata tggttggcga gctataaagg
     6721 ccgtgtgttt gccaccgcct tgcgcgagga aaagcaggtg gttttgtacg gcgaagattt
     6781 gtgcgaaccg acagcctggg tgtttggcaa cgaaggcgcg ggggtcggta aagcggtttt
     6841 ggacagggcg gacaagtgtg tcaggattcc gatgcacgat gcaaccgagt ctttaaatgt
     6901 cgcgatggcg gcgacaatct gcctgtttga acagatgcgg cagcggtcgg cgtattgagg
     6961 aaaagaaatg ccgtctgaaa aaatctatta cggcgtattg attttcttat gtatcgcttc
     7021 tatgctgctg tcgccgtttt tttatgcggg tgctttgaag cccaagaagg cggcattgcg
     7081 gaaggacggg cagtggaaac tcatcttatt gtccaatacc gtggcggcgg cggttttgtt
     7141 ttggatgtgg tggaaatggt tttgacagat attgctcaaa atcgtgctaa tggaatccga
     7201 acaaataaag aatttggtaa aaaatttgtt aaatcaacga attaaagttt tgtggaaaac
     7261 aaaacagctc taagcaaata gggcgtttgt cggtaaatac ggaagagttg cggcattatc
     7321 gggcatcttt aacaagtagt gccggcttgg caggcaattg gtttttatgg gcagtttgca
     7381 aaattgcaga tataaaattg cgaatcggtt aaagcgtgag gataccatga aaaattgcaa
     7441 atttttttat gatccgacaa gggcaatcta tgatagcggt gcagattact taactaggga
     7501 aaaacataga ttagtcgtta tcgcaaatag tgcttggggg ctattgctta atttatcttg
     7561 ttattatgac gaggttttgg aaaagcggaa aataccgttc ggcaaacagg aaattgatga
     7621 cgatatggac aaagtgtccg cccataagcg gaagtttaaa gatatttctg aaatcaaagt
     7681 aggggatggt tgggaatacc cgttcaatta tgagcaggga atgaaagaat tagatgaagt
     7741 gctattgaaa tacattccct tttttgaaga agaacgataa aggaggttga tatgcgcgta
     7801 tctaaaataa ttggaagtat gttgcttgtt acagcggttc agaccgtatt ttcggcaaat
     7861 gtttacgcgt gccgccataa tggtaaaacc agttacagcc aaactccggg aaaacattgt
     7921 accaacgcgg gtttggggcg ggacctggtg tacagttcgg tcaggcctgc cgtgaaagac
     7981 agggcggaag acgcaggggc tgacgatcat ttggattcgg tgagggacga acacgtccaa
     8041 aatccgagag agaatacgca taaggatgct tcgaataccg gtgcaaagac gcattgattg
     8101 aaaccgaatc agccatgacg gcgttgaata atagaatttg aacgattagg gaactctgat
     8161 gaaacacatc cacattatcg gtatcggcgg cacgtttatg ggtgggattg ccgccattgc
     8221 caaagaagca gggtttgaag tcagcggttg cgatgcgaag atgtatccgc cgatgagcac
     8281 ccagctcgaa gccttgggca taggcgtaca cgaaggcttc gacgcggcgc agttggagga
     8341 atttaaagcc gacgtttacg tcatcggcaa tgtcgccaag cgcgggatgg atgtggttga
     8401 ggcgattttg aaccgcgggc tgccttatat ttccggtcca caatggctgg ctgaaaacgt
     8461 gctgcaccat cattgggtac tcggcgtggc ggggacgcac ggcaaaacga ccaccgcgtc
     8521 tatgctcgcg tgggttttgg aatatgccgg actcgcaccg ggcttcctta ttggcggcgt
     8581 accggaaaat ttcggcgttt ccgcccgcct gccgcaaacg ccgcgccaag acccgaacag
     8641 ccaatcgccg tttttcgtta tcgaagccga cgaatacgac accgcgtttt tcgacaaacg
     8701 ctccaaattc gtgcattacc gtccgcgtac cgccgtgttg aacaatctgg aattcgacca
     8761 cgccgacatc tttgccgact tgggcgcgat acagacccag ttccactacc tcgtgcgtac
     8821 cgtgccgtct gaaggcttaa tcgtctgcaa cggacggcag caaagcctgc aagatacttt
     8881 ggacaaaggc tgctggacgc cggtggaaaa attcggcacg gaacacggct ggcaggccgg
     8941 cgaagccaat gccgacggct cgttcgacgt gttgctcgac ggcaaaacgg ccggacgcgt
     9001 caaatgggat ttgatgggca ggcacaaccg catgaacgcg ctcgccgtca tcgccgccgc
     9061 gcgtcatgcc ggtgtcggca ttcagacggc ctgcgaagcc ttgggcgcgt ttaaaaacgt
     9121 caaacgccgc atggaaatca aaggcacggc aaacggcatc accgtttacg acgacttcgc
     9181 ccaccacccg accgccatcg aaaccacgat tcaaggtttg cgccaacgta tcggcggcgc
     9241 gcgtatcctc gccgtcctcg agccgcgctc caacaccatg aaactcggca cgatgaagtc
     9301 cgccctgcct gtaagcctca aagaagccga ccaagtgttc tgctacgccg gtggcgtgga
     9361 ctggaacgtc gccgaagccc tcgcgccttt gggcggcagg ctgcacgtcg gcaaagactt
     9421 cgatgccttc gttgccgaaa tcgtgaaaaa cgccgaagca ggcgaccata ttttggtgat
     9481 gagcaacggc ggtttcggcg gaatacacgg aaagctgctg gacgctttga gatagcccgg
     9541 gcgatgccgt ctgaaagccc ttcagacggc atcgtccggc tgcgcggcac aaaggcggaa
     9601 aaaccgtttg ccccgtattt tcaaacgcgt tacacttgcc gccgctgttt tcagccattt
     9661 gattacccgc aaccgccgtc attgcgccgg cggtttgcct gtcagcgtca ttgcgccgct
     9721 gtaaatacga aagaacacat tatgaccgta tcccccgtcg ccttgcgccg taagaccgag
     9781 tgcaagcctc atcccaccgc gcgctattgg aaaaaatgcg atgtcgaggc acttttcgga
     9841 ctgccgtttt tagaacttgt ccatcaggcg gcagaagtcc accgccaaaa tttcaacccg
     9901 cgcgaaatcc agctttccac gctgttgtcc atcaaaaccg gcggttgtcc cgaagattgc
     9961 gcctactgtc cgcaatcggc gcaccacaat accaatctgg gcaaagagca gatgatggat
    10021 gtggatgaaa tcgtcgaaaa agccaaaatc gccaaatcgc gcggcgcaag ccggttttgt
    10081 atgggcgcgg catggcgcgg ccccaaaccc aaagacgtgg agacggtttc cgcaatcatc
    10141 aaagccgtca agggcttggg tatggaaacc tgcggcacgt tcggtatgct cgaagaaggt
    10201 atggcggaag acttgaaaga ggcgggcttg gattattaca accacaacct cgacaccgac
    10261 cccgaccgct acaacgacat catccataca cgccggcatg aagaccgtat ggacaccttg
    10321 ggcaaagtcc gcaacgccgg tttgaaagtc tgctgcggcg gcatcgtcgg gatgaacgaa
    10381 acccgcgccg aacgcgcagg gctgattgcc agcctcgcca acctcgaccc gcagcccgaa
    10441 agcgtgccga ttaaccggtt ggtcaaagtg gaaggtacgc cgcttgccga tgccgaggat
    10501 ttggactgga cggaatttgt ccgcaccatc gccgtggcgc ggattacgat gccgcaaagt
    10561 tatgtccgac tgtcggcagg gcgcagcaat atgccagaag cgatgcaggc gatgtgcttt
    10621 atggcgggcg cgaactcgat tttttacggc gacaagctgc tgaccacggg caatccggat
    10681 gaagacggcg acagaatcct gatggaaaag ctcaacctgt atcccttaca gtttgagctg
    10741 gaaggcgagg tcgccgaagt ggaaaaagcc tctgggatta aagtggatta ttgacgattg
    10801 caaaaatgcc gtctgaaacc cgaaaaaagg ctttcagacg acatttgttc ggacggtatt
    10861 tccaatatct ttttaccggc gcgtgatgtt gccgtcgggc gagacatcca gcccgttccc
    10921 gttggggaag tcgctgcggt tcagataaat aatccgcccg ataacggttt ttcagggtcg
    10981 attttgggga ttttatcgtc ggcttgggta atagggatga tagttccgga aataaattta
    11041 ccctgtttgt tggtgataat tttgaaaatc ggcgcaatgc cgctgatgcc ggaggtgttg
    11101 attgcgccgt aggtggcaaa gttgccgccg ctgtaagaga tgaagcggtc gcggtaaagt
    11161 tcgacggcgc gtgtaacgtg cggcccctgc ccgaatacga catccgcgcc ggaatcgacg
    11221 gcaagccgtg caaactcgac gacgttgccc ctgttttccc catagaagat ttcggtatcg
    11281 aacggcaggt gttccgcctg tttcccttcc cgccgccgtg gaacattaca atgacgatgt
    11341 cggctttctg tttggttttg gtaatccgtt ttctaacttt ggcataatcg ttcagtttga
    11401 cggcggcaag gttgggggcg aaggagacga agccggatct tacgccgttt ttcttcagga
    11461 tggcggtttc aaacctgttt tcgatgcccg aatatttgat gttcaattcg tcaaggttcg
    11521 ccctttatgc cgtttccgca ccgcaaaccg ccggggtcaa gccctcggcg catcctgccg
    11581 gaacggaatc cccgtgctgc cgattgacgg ttcaaacccc gcgcccgttt caaataccgg
    11641 cgatgtggac ggacaggatg cgcctgacga aaagacagcc gataccgttt ccattatcgg
    11701 cgtgggcgac attatgctcg gcagcaatta tccggtcgat tacctgcccg ataccaatat
    11761 tctgaaaaac gtcgaatctg ccttgcaaga cgcggacatt accgtcggca acctcgaagg
    11821 cacgctgttt gacgaaggcg gtacgccgaa aaaatgtgca accccccaaa atatgctatg
    11881 cattccgaac gccctccgca tacgggcaat accttgccga cgcgggattc gactacctca
    11941 gcttcgccaa caaccacagc aacgacttcg gcgcgcaagg catcacggca acggcggcga
    12001 gcggcagctc ttttacatac tcgatcgcgc taaagccgct gccgataacg aggccaaaat
    12061 tgcggaaaat accgccatcg cccagataaa tttgtccatc atcagacctt tactgttcag
    12121 acgagacagc atttgccgca cgttttgggg cttatctttc gatttgcgct acgtcgcgca
    12181 ccgcgccttt gtcggcggaa gtcgccatcg cgccgtaagc acgcagggct gcggagacgt
    12241 agcggtcgcg gttttccggt ttccacgctt tgctgccgcg cgcttccatt tcggcacggc
    12301 gggcggcaag ctcttcatcg gaaatggcaa ggtggatgct gcggttgggg atgtcgattt
    12361 cgacggtatc gccttcgtgt accaaaccga tcgcgccacc ttccgccgct tcgggcgagg
    12421 cgtgtccgat ggacaaacct gatgtgccgc cggagaagcg tccgtcggtt aagagagcgc
    12481 aggctttgcc gaggccttta gatttcaggt aggaagtcgg atacagcatt tcctgcatgc
    12541 ccgggccgcc tttcgggcct tcgtagcgga tgatgacgat gtcgccggcg acgatttggt
    12601 tgcccaaaat gccttctact gcgtcttctt ggctttcaaa cacgcgggcg cggccggtga
    12661 atttgaggat gctctcgtcc acgcctgcgg tttttaccac gcagccgcgc tcggcgatgt
    12721 tgccgaacaa gaccgccaaa ccgccgtctt gcgagtaggc gtgtgccacg tcgcggatac
    12781 agcctttttc gcggtcgagg tcgagggttt tccacatacg gttttgcgag aacgcttggg
    12841 tggtgcgtac gccgccgggc gcggctttga agcgttcgat ggcgcgggtg ttttcagggt
    12901 tggttatgtc ccatttttca atcgcgtctt tcagcgtcgg tgcgtggata gtgtgcacgt
    12961 cggtgtgcag cttgcccgct ttgtccaatt ctttcaggat ggcgaaaatg ccgccggcgc
    13021 ggtgcacgtc ttccatatag tagtcgtggt tgttgggtgc ggttttgcag atgcagggca
    13081 caacgcggct taagcggtca atgtcggcca ttttgaaatc gacaccggct tcgttggcaa
    13141 cggccaacag gtgcaaaatg gtattggtgc tgccgcccat cgcaatatcc atcgtcatag
    13201 cgttttcaaa cgcttttttg gtggcaatgc tgcgcggtaa cacggtttca tcgttttgct
    13261 cgtaatagcg tttggtgatt tcgacaatca tacggccggc ttcgaggaac agttctttgc
    13321 ggccgacgtg ggtcgccaaa tacgaaccgt tgccgggtag ggacagaccg agtgcttcgg
    13381 tcaggcagtt catcgagttt gccgtaaaca tacccgaaca cgagccgcag gtcgggcagg
    13441 cgttttgttc gacttcctcg acttgccggt tgctgacatt gtcgtccgcc gattcaatca
    13501 tcgcgtcaat caagtccaaa cggcgttcgg gctggatgtt tgccacgccg ataactttac
    13561 ctgcttccat cggaccgccg gaaacgaaga tggtcgggat gttcaggcgc atcgcggcaa
    13621 tcagcatgcc cggggtgatt ttgtcgcagt tggaaatgca caccagcgcg tcggcgcagt
    13681 gggcattgac catatattcg atggagtcgg caatcaaatc gcggctgggc agggaataca
    13741 gcataccgct gtgtcccata gcgatgccgt cgtcgatggc gatggtgttg aattctttgg
    13801 cgatggcgcc cgccttttcg atttcgcggg caaccagctg gcccatattg tgcaggtgga
    13861 catggccggg cacgaattgg gtgaaggagt tggcaacggc gatgatgggc ttgccgaagt
    13921 cggtttccat cacgccggtg gcgcgccaca atgcacgtgc gcccgccata ttgcggccgt
    13981 gggtggaggt tttggagcgg tattctggca tagtgtgttt ccttgtctgc tatgccgtct
    14041 gaacggcaaa aggctttcag acggcatttt tgttgtgttt tgaaatgaaa aaaaaggtat
    14101 tttataccaa gtatcggaat tttgcggaat ggaaacgcgt gcggcaaaaa aggacatccc
    14161 ccgcaggaat gcgggggacg gtttcaggcg cgcgcaatcg ggacggcttt ggatgcgtcc
    14221 caaaaatcga cgggcgcatc caacacgggt ttgacgatgc ccgtccgtat ggcgaaatcg
    14281 ccgaaacctt cgtcggtatc gcgtcccgcc gcccatttgc cgatcaggtc gtctaattcg
    14341 gaaaggattt ccggcagggt aatgttttct ttgtagagtc gggggatgcg tacgccttcg
    14401 cggtcgccgc cgatgtggag gttgtagcgt ccgacggctt tgccgaccag tccgatttcc
    14461 gccaacatcg cccgtccgca gccgttcggg cagccggtaa tgcgggtaac gatgtagtcg
    14521 tccgacgtgc cgtgtttcgc cataatctta tccagctcgc cgatgaagtc cggcagcacg
    14581 cgttcggctt ccgccattgc cagcgggcag gtcgggaagg aaacgcacga catcgcattt
    14641 tcacgcagtt tactgacatc gttgcggatt aatccgtatg ttcgggcaag ttcttcgatt
    14701 tttgctttgt ctgcttcggc gacatttgcc acgatgaggt tttggttggc ggtgatgcgg
    14761 aaatcgcctt tgtggatttt ggcgatttcc aacacgccgg tcagcagctg tttcccgcct
    14821 tcgtcaacca aacgcccgct ttcgatgaaa agggtcaaat gccagttgcc gtctatgcct
    14881 ttcacccagc cgatacggtc gccgcgcccg gtaaatttga acgggcgtat gggttcgaac
    14941 ggcataccca tacggcgttc gacttccgcg cggaagttgt ccaagcccat attttgaatg
    15001 gtgtagcggg tgcgggcgtt tttgcggtcg ctgcggttgc cgaagtcgcg ctgcgtggtt
    15061 accaccgctt cggcggcctt cagcgcgtgt tccggaggca cgaaacccag ttccagtgaa
    15121 atgttcggat aggttttggt gttgccgtgt tccatcgaaa gcccgccgcc tgccaaaaca
    15181 ttgaagccgg caagctgtcc gttaccgtct gaaacggcga cgaaatccaa atcgttgccg
    15241 tagcagtcca catcgttcaa gggcgggatg acgactgcgg ttttgaattt gcgcggcaga
    15301 taggttttgc ccaaaatcgg ctcgtcttct tgaaggaagt cgtcggaact ttgaactttt
    15361 ttgccgtcca cccacacatc cagataaccg cgcgtgcgcg gcagcaagtg ttcggaaatc
    15421 tttttcgcgt attcgtaagc ctgccggtgc agttcggact cgatcgggtt ggacgtgcaa
    15481 agcacgttgc ggttcatatc cgccgccgtg gcgatggaat ccaaacccag tttgtgcaag
    15541 aggcggtgca tcgtctgcaa cttggctttc ggcacgccgt gaaattggaa ggtttgccgg
    15601 ttggtcagcc ggatggagcg gtaatgactg ttttcccggg caaatttgtc cagttctatc
    15661 cattgggacg gtttgatgat cccgcccggc agccggcagc gcaaaagcat aaatttcaag
    15721 ggctcgagtt ttgcctcggc gcgttcggcg cggatgtcgc ggtcgtcctg ctcatacata
    15781 ccgtggaagc ggatgagttg gaagttgtcg cctttgaagc cgcccgtgag cgggtctttc
    15841 aaatcgtcca aaatcgtgcc gcgtaaaaaa ttgctttcgg ttttcagacg ttcgttgtcg
    15901 gatagcggtt tttcttgcca cgccaaacct tttgtcttgg tctgtacggt cattttgtgt
    15961 tcctcccgat tatatttaat caataaacat cacgctgata gcgtttttct tcgcgcagca
    16021 tatccaaata ttcttctgcg ccctcttcgt ccaaatgtcc tgccccgata atcacatcca
    16081 gcaaggcggc ttccacgtct tttgccattt ttgccgcatc gccgcacaca tagatatgcg
    16141 cgccttcctg cagccattgc caaagtcctt ccgcctgttc gcggattttg tcctgcacat
    16201 agattttttc ttcctgatcg cgggaccagg cgaaatcgta cctgtgcagg aaaccgtctt
    16261 tggcaaactg ctgccattcg gtttgataga gaaaatcacg ggcaaaatgc ggattgccga
    16321 aaatcagcca gtttttgcct tccgcatttt ctgcggcacg ttgttggacg aaggcgcgga
    16381 acggtgcgac gccggtgccc gagccgatca tcacaatcgg cttgcggctg tcttcgggca
    16441 gcctgaagcc gtcgttgcgt tccacaaaca cgcgcaccgt gccgtcctct tccagccggt
    16501 cggcaaggaa acccgatgcg ccgcccgccc tggcgcgccc ttcgtgttcg aaacgcaccg
    16561 cgccgacggt caggtgcact tcgtccccca cttccgcctg cgacgaggaa atcgaataca
    16621 ggcgcggcgc aagcgggcgc agtaggccgg cgaattgttc cgccgtcagt tttgccggga
    16681 agcggtgcag cacatcggca atcggcgtgc tttgcacaaa gccttgcaaa acggcgttgt
    16741 cggcagcaat acggtcgagt tcgtcatcat cggcgaacgg ggcatagcct ttgacaaagg
    16801 cgggggtgtt ttgcgtgagt tcaaaatggg ataacagtgc ggaggcaacc ggcagggttt
    16861 ttccgcccgc ctgtatttcc gttgccggat cgatgccgag caggtctagg atttccctga
    16921 ccagtgccgg atcgttgtca aaccaaacgc cgagcgcgtc gcccgggagg tagtgcaaat
    16981 ccgaaccgct caaatcgatt tcgatgtggc gcacgtcttt atcggattgg cgggcggtga
    17041 ttttctgatt ggccagcagg gcggcgggaa aggggtctgc cttgcagtac ctgccatccg
    17101 gtgccgtctg aaggccggcg gggggcgttg tctgcggcgc gggcgttgcc cggttttttg
    17161 cggcttcttc ttttaagcgc gcgacaatgc ggcctgtcca tccgtctgcg gcggcggcaa
    17221 agtccaaatc cgcatcaacg cgttcgagca ggcgttttgc gcccaattct tcaaaacgcc
    17281 ggtcgaaatc tttgcccgcc cggcagaaat tcggatagga actgtcgccc aaacccagta
    17341 cggcaaattg gagtttgtcc aatttcgggg cttttttgcc gttcagcagt ttgtgcagca
    17401 cgacggcttc ttccggcggt tcgccttcgc cctgggtgga cgtaaccagc agcaggcggc
    17461 gttcgtcggc gatgtttttc gccttatagt ctttcagttc ggcgcgcctg acttggatgc
    17521 cggcggcttc caggctgtcc gacgctttgt cggcaacgga tttcgcattg ccggtttgcg
    17581 aggcggaaag gacggttacg gaaaaaggtt ctgccgccgg caatgccgtc tgaagcgcgg
    17641 gcagccctgc ggatgccccg tttcctgctt ttgcccaagc gtagccggac agccacgccc
    17701 attgtgccgc gtccagcccc gacaggagct gcgtgatttc gggcggcaga ggcggtaatg
    17761 gcggatttgt gttctgcata tcgtgttcac tcataaaatc atacctgccg caacagtgcc
    17821 gtatgtcgct tcgtctatca ggataaacga accggcggcg gtgttttccg cataaggcgt
    17881 tgccgtaacg ggtttttgaa ggttgatgcg gactttggcg atgtcgttca tcttcaagga
    17941 ttccgcgccg gcctcttgtt ccagcgtgcg gacatctaaa acgctttcaa tttccccgac
    18001 ttttgccggc acggtttgcg tgccgtgctt gagcaggtat ttgcgcgcgg tgttgagcgg
    18061 acgttcgtca aaccagcaaa gcgtggcttc cagatgtttt tgcggggcga gcggggaatt
    18121 tttatcgaca aaaaggtcgc cgcgcgaaac atcgatgtcg cggtccagcc ggagggttgc
    18181 cgcctcgccg gcaaaagcct gcgccacttc ccctttcggc gtgatgattt cggacacttc
    18241 ggcggtcagc ccgttcggtt cgatgcggac ggtttgcccg acggcgaccg aaccgcgttc
    18301 gatgcgcccc tgatagcctc ggaaatcatc ggccttgtcg gcatcttggc ggacgaccag
    18361 ttggacgggg aaataaaaat cggcagcgga acgaccggtt tcgtccgccc ccggcaggtt
    18421 ttccaagatg accagcagcg gttcgccccg ataccacggc atattgccgc cggggtaaac
    18481 gaggttgtcg cccaagagtg cggacaccgg tacgaaatgc acgtctttca aaccgagctg
    18541 ttcggcaagt cggcggtatg cctccacaat ggcgttgaat ttgtcttcgc tgtaatccag
    18601 caggtccatt ttgttgaccg ccaccacaat atgcgggcag ttgagttggc ggaggatggc
    18661 ggaatggcgt ttggtctgcg gcagaagctg caagggctgc gcgccgaaat ccagttggga
    18721 tgcgtcaacc agcacgactg ccgccgaagc ggtgcttgcg cccgtaacca tattgcgcgt
    18781 gtattgttcg tgccccggcg tgtcggcgat gatgaatttc cgtttcgccg tggaaaaata
    18841 gcggtatgcc acatcgatcg taatgccctg ttcgcgttcg gcttccagtc cgtcggtcag
    18901 gatggagaag tctatggttt ctttcaaacc tttgcttttg ccggattcca aggttttgat
    18961 ttggtcggac agcagggctt tgctgtcgta gagcagtcgt ccgatcaggg tgcttttgcc
    19021 gtcatcgacg ctgccggcgg taatgaagcg gagcggggcc tggtgttgtg ccgtcatatt
    19081 ttcttcctca tatctgctta aagggttttt gaaatttaga aatagccttc ttttttgcgt
    19141 ttttccattg ccgcctcgct tgcctgatcg tctagccggg tcgcgctgcg ttcggaaatg
    19201 tcggcaaccg ccgtttccct gataatctcc gccggcgtgg acgcggtgct ttctaccggg
    19261 caggtgcagc tgatgtcgcc gacggtgcgg aagcggacat caaggatttc ggaggtttca
    19321 gacggcattt tcggggtgag cggcgttaca gggaccagca gccccctgcg tctgaccact
    19381 tcgcgcctgt ggctgtaata aatcggcggc agctcgaggt tttcgcgggc gatgtattgc
    19441 cagatgtcga gttccgtcca gttggaaatc gggaagacgc gcatattttc gcctttgtgc
    19501 agcctggtgt tgtacagcga ccacagctcg gggcgttgcg ccttcggatc ccattgtccg
    19561 aactcgtcgc ggaacgagaa aatccgttct ttggcgcggg ctttttcttc gtcgcgccgc
    19621 gcgccgccca tcagcgcgtc aaagccgttt gcctcgatgg tttccaacaa ggtaaccgcc
    19681 tgtgccgcat tgcgcgaatc ggtttctttg cgtaagacca ccgtgccttt agcgatggag
    19741 tcttccacgc gccccactat caggcgggca ttgagttttg ccgcctgcgc gtcgcggaag
    19801 gcaatcactt cggggtagtt gtgccccgtg tcgatatgca ccagcgggaa gggcagtttt
    19861 accggcctgc tgcccagccg gaaggctttg caggcgaggg cgagcaggac cacggaatct
    19921 ttgccgccgg aaaagagcag ggcggggttt tcgcattctg ccgccacttc gcggataatg
    19981 tggatggatt cggattccaa ccagtcgagt tggacgttgt tcggttcggt tttcgtcata
    20041 cgatattcct tatttcttct gtttgatcct tatgaattat ttgtgcagcc cgcattcttt
    20101 gctgttttta tcttcccacc accaccgccc ggcgcggatg tcttcgccgg ccttgacggg
    20161 gcgggtgcag gggtcgcagc ctatactggg aaagccttgc cggtacaaat cgttgtaagg
    20221 cacattgttg gcaaggatgt atgcccacac gtcgtgttcc gaccagtcga aaatcgggtt
    20281 gtatttatcg atgccgcgcc cggcatcata ttcggcaaac ggcagttccg tgcgtgtggc
    20341 ggactgttcg cggcgttgcc cggtaagcca agcatccgcc ccggcaatgg cgcggtcgag
    20401 cggttcggtt tttcggatgc ggcagcattc gcggcgcgct tcaacgctgt cgtaaaaggc
    20461 aaacctgcct ttgctttcca cataatgcag ggcatcttcc cgtatcggtt ggaaacgctt
    20521 gatttgcata tgcggataaa cacgttcaat cctatccaac aggtttaaag tttccgcgtg
    20581 cagcagcccc gtatccaaag taaaaatacc gatattgagg ttttctccgg cgataaggtc
    20641 ggtaattacc atatcttccg cagcaaggct gctggcaaac cgtgcatccc ggtggctgcc
    20701 ggcaatccgg tgcaggcgtt gtttgagggt ttccgttttt tccgccaaag ccgtttcact
    20761 gccattttca atcggcggaa ttttccataa agcaggtttg aaaattttca ttttgtccgc
    20821 cttgctttat gcggcttgtt gttcttgtcc ggtgcccagt ccgtccaatg caaaatacgc
    20881 gtgttcggcc ggattgcttt cttttttggc gttttcgccg aaccaagcca gtttttcgtg
    20941 cagccccacc acttcgccta tgacaatcaa tgccggattc ggcgcggttt cggcgagttc
    21001 ggaaaggttg gcgagcgtgc cggttgcggt tttttgagcc ggcagcgtgc cttggctgat
    21061 aacggctgcc ggcgtgtcgg gcgagcgtcc gtgctgttgc agccgttcgg caatcagggc
    21121 ggctttgagc gcacccatat aaatcaccaa ggtctggcgg ctgcgggcga gggtctgcca
    21181 ttcgatgtcg ggcgcatccg ccttgcggtg gccggttacg aaaaccgcac tttgggcata
    21241 atcgcggtgc gtgagcggga tgccggcata ggcggtcgcg ccgacggcgg cggtaatgcc
    21301 ggggacgacc gaaaacggga tctgatggcg tgccaaggtt tccaattctt cgccgccgcg
    21361 tccgaacacg aaagggtctc cgccttttaa acgcaccacg cgcctgcctt cgcgggccag
    21421 cctgaccata agcgcattgg tgtcctcttg cggggtgcgg ccgccccggg cgcgcttgcc
    21481 gacaaaaatc cgttccgcat cgcggcggac gagggacagt atgccgtctg aaaccagcgc
    21541 gtcgtaaagc accacgtctg cctgctggat ttcctgcagc cctttgagcg tcagcagccc
    21601 cgcatcgccg ggacccgcac cgaccaaaga cacaaaaccg ccttgataat tttgttccaa
    21661 ctgctttgcc aactcctgtt cggcttgggc ggtttgttga tttttaacga gggcggcaaa
    21721 acggccgttg aactgctttt cccaaaaacg gcggcgttcg gtaacggatt tcagtttggc
    21781 tttgaccgca tcgcgccatc ttccggagat ttccgccata tcgcccaaag acggcggcag
    21841 cagggcttcc agcctttcac gcagcagtcg ggcgaggacg ggcgcgctgc cggagctgga
    21901 aacggcaatc tgaaccgggt tgcggtcgat aaccgacggg aagatgaagc tgcaatggtc
    21961 gcggtcgtcc accacgttga ccggcttttg gcagctttcg gcaagatgga aaacgcgccg
    22021 gttgagggct tggtcgctgc ttgccgcaat gatgaggaaa accgtgcgga tgtgttcggc
    22081 acgaaattct tcggcaagcc acaggatttt gttttccgcc gccaacgcgg agagttcggc
    22141 attcaggtgt tttgcggcaa ccctgacctc tgcgcccgcc ttcagcagca ggctgatttt
    22201 gcgtgcggcg accgcgccgc cgcctacgac caatacgggg cggccggcga ggttggcgaa
    22261 aatagggaaa taattcactg gctgactcct ttgctgtttg cccgcacctt gtttccgata
    22321 cggtgcgtcg cggcattttt gtcggaatgc gggtcatttt agacaaaagg attttcccgg
    22381 ttaaataata aaaaggcatt tgttagaagc tgaaagctat atgagggcgg ctgcggatgc
    22441 ggcggttt
//
LOCUS       DAXIFS010000012        20794 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.012, whole genome shotgun sequence.
ACCESSION   DAXIFS010000012 DAXIFS010000000
VERSION     DAXIFS010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.012"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(54..1337)
                     /gene="hemL"
                     /locus_tag="ACFOCA_000385"
     CDS             complement(54..1337)
                     /gene="hemL"
                     /locus_tag="ACFOCA_000385"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFC6987155.1"
                     /translation="MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYV
                     WDENGTRYTDYVGSWGPAIVGHAHPEVIEAMREAALGGLSFGAPTEGEIVIAEEIAKI
                     MPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTF
                     GNPSSAGVPADFTKHTLVLEYNNIAQLEEAFAQSGNDIACVILEPFVGNMNLVRPSEA
                     FVKALRELTEKHGAVLIYDEVMTGFRVALGGAQSLHGITPDLTTMGKVIGGGMPLAAF
                     GGRKDIMECISPLGGVYQAGTLSGNPIAVAAGLKTLEIIRREGFYENLTARTEQLVQG
                     FRTAADAAGIEFTADSVGGMFGLYFAAHAPRNYADMARSNIDAFKRFFHGMLDRGIAF
                     GPSAYEAGFVSAAHTPELIDETVAVAVEVFKAMAA"
     gene            complement(1401..1784)
                     /locus_tag="ACFOCA_000386"
     CDS             complement(1401..1784)
                     /locus_tag="ACFOCA_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010950978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6987156.1"
                     /translation="MYCLRLRRLVLIFVNPLYQTEEGIAQTVVKGKTTRAEVEARFGK
                     RNPFGCYAYHEVSLPIYNFLPTNFIYMKSERRHWEWCVDYDWEGVVRDYRFTHKVEKD
                     ERSVIRDAVGVIRKEAGKSLSQPEK"
     gene            complement(1837..1917)
                     /locus_tag="ACFOCA_000387"
                     /pseudo
     CDS             complement(1837..1917)
                     /locus_tag="ACFOCA_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
     gene            2120..3448
                     /gene="miaB"
                     /locus_tag="ACFOCA_000388"
     CDS             2120..3448
                     /gene="miaB"
                     /locus_tag="ACFOCA_000388"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFC6987157.1"
                     /translation="MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADII
                     LFNTCSVREKAQEKVFSDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVV
                     FGPQTLHRLPKMIVDKETSGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKY
                     CSFCVVPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDF
                     ATLLRIVHEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSA
                     MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSF
                     VFIYSPRPGTPAANLHDDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGI
                     SKKDPDQLQARTANNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKVVEA"
     gene            complement(3533..5446)
                     /gene="dxs"
                     /locus_tag="ACFOCA_000389"
     CDS             complement(3533..5446)
                     /gene="dxs"
                     /locus_tag="ACFOCA_000389"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFC6987158.1"
                     /translation="MNPSPLLDLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGG
                     HFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAG
                     FPKRSESEYDAFGVGHSSTSIGAALGMAVADKQLGNNRRSVAIIGDGAMTAGQAFEAL
                     NCAGDMDVDLLVVLNDNEMSISPNVGALPKYLASNVVRDMHGLLSTVKAQTGKVLDKI
                     PGAMEFAQKVEHKIKTLAEEAEHAKQSLSLFENFGFRYTGPVDGHNVENLVDVLKDLR
                     SRKGPQLLHVITKKGNGYKLAENDPVKYHAVAKLPKEGAAQMPSEKEPKPVAKPTYTQ
                     VFGKWLCDRAAADERLIAITPAMREGSGLVEFEQRFPDRYFDVGIAEQHAVTFAGGLA
                     CEGMKPVVAIYSTFLQRAYDQLVHDIALQNLPVLFAVDRAGIVGADGPTHAGLYDLSF
                     LRCIPNMIVAAPSDENECRLLLSTCYQADAPAAVRYPRGTGTGAPVSDGMETVEIGKG
                     IIRREGGKTAFIAFGSMVAPALAVAGKLNATVADMRFVKPIDEELIVRLARSHDRIVT
                     LEENAEQGGAGGAVLEVLAKHGICKPVLLLGVADTVTGHGDPKKLLDDLGLSAEAVER
                     RVRAWLSDRDAAN"
     gene            complement(5531..6448)
                     /gene="xerC"
                     /locus_tag="ACFOCA_000390"
     CDS             complement(5531..6448)
                     /gene="xerC"
                     /locus_tag="ACFOCA_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HFC6987159.1"
                     /translation="MVLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQM
                     PSEDAGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDP
                     TADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIH
                     GLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNG
                     TRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLS
                     TTQIYTKLDFDHIARLYDEAHPRAKRRDE"
     gene            6642..7706
                     /gene="fba"
                     /locus_tag="ACFOCA_000391"
     CDS             6642..7706
                     /gene="fba"
                     /locus_tag="ACFOCA_000391"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219833.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFC6987160.1"
                     /translation="MALVSMRQLLDHAAENSYGLPAFNVNNLEQMRAIMEAADQVNAP
                     VIVQASAGARKYAGAPFLRHLILAAVEEFPHIPVVMHQDHGASPDVCQRSIQLGFSSV
                     MMDGSLMEDGKTPSSYEYNVNATRTVVNFSHACGVSVEGEIGVLGNLETGEAGEEDGV
                     GAVGKLSHDQMLTSVEDAVRFVKDTGVDALAIAVGTSHGAYKFTRPPTGDVLRIDRIK
                     EIHQALPNTHIVMHGSSSVPQEWLKVINEYGGNIGETYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAVRRYLAENPSDFDPRKYLSKTIEAMKQICLDRYLAFGCEGQAGKIKP
                     VSLEKMANRYAKGELNQIVK"
     gene            7864..8685
                     /locus_tag="ACFOCA_000392"
     CDS             7864..8685
                     /locus_tag="ACFOCA_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="factor H-binding protein"
                     /protein_id="HFC6987161.1"
                     /translation="MNRTAFCCLSLTAALILTACSSGGGGVAADIGAGLADALTAPLD
                     HKDKSLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIE
                     VDGQLITLESGEFQIYKQDHSAVVALQIEKINNPDKIDSLINQRSFLVSGLGGEHTAF
                     NQLPSGKAEYHGKAFSSDDPNGRLHYSIDFTKKQGYGRIEHLKTPEQNVELASAELKA
                     DEKSHAVILGDTRYGGEEKGTYHLALFGDRAQEIAGSATVKIREKVHEIGIAGKQ"
     gene            8823..9500
                     /gene="tsaB"
                     /locus_tag="ACFOCA_000393"
     CDS             8823..9500
                     /gene="tsaB"
                     /locus_tag="ACFOCA_000393"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HFC6987162.1"
                     /translation="MQADFNRPVLAVDTGTSYLSLALRADGETRLFHQEVGSRQSALI
                     LPEIRTLFRNAGITAADLGAIVYAKGPGAFTGLRIGIGVAQGLATPFDTPLIGIPTLD
                     AAASLPPPQSCILAAADARMGEVFYAWFDTLNRRRLSDYQVGRAADIRLPEGCAFSDG
                     IGSAFALEETPPFSGKPDMPTAADFLNLAAEGGFPAVAAAHAELLYVRNKIALTAKEQ
                     AERRARL"
     gene            9497..9937
                     /gene="rimI"
                     /locus_tag="ACFOCA_000394"
     CDS             9497..9937
                     /gene="rimI"
                     /locus_tag="ACFOCA_000394"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HFC6987163.1"
                     /translation="MNIRRAVYADCAALAALDAVCNPSAWTQRQFESALVSLSEQVFL
                     AEKDGGLAAFIVWQNLPDESELHLIATAPECRRQGIASALLEYWFAHLPEGTQRLLLE
                     VRAGNTAAQALYAAHGFSIAGRRKNYYRATDGQTEDAVLMEKIC"
     gene            9931..10665
                     /locus_tag="ACFOCA_000395"
     CDS             9931..10665
                     /locus_tag="ACFOCA_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6987164.1"
                     /translation="MLSARYLHLHEALGLGPMWLKQAAAVLPPKNTPATPAQARPQTV
                     RAAPIRPSQPHNGQARLETMKALETAAVPTRKPAPETETPLPGLSDGIAPVPAASGIT
                     KLAVVSLCPPIEDAVYGQLFHGKAGVLLDNILKAVGLDAAYVHKTSWVKTAAVGNPMP
                     SEQAVANALGQIARELDGCRAPAVLFLGQAFVQPERQTMIETLCGSRPFFIIDHPARL
                     LRQPELKARNWQVLKQLKHALQAGGS"
     gene            10727..11368
                     /gene="pyrE"
                     /locus_tag="ACFOCA_000396"
     CDS             10727..11368
                     /gene="pyrE"
                     /locus_tag="ACFOCA_000396"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFC6987165.1"
                     /translation="MTDFRQDFLKFSLAQNVLKFGEFTTKAGRRSPYFFNAGLFNDGL
                     STLQLAKFYAQSIIESGIRFDMLFGPAYKGIILAAATAMMLAEKGVNVPFAYNRKEAK
                     DHGEGGVLVGAPLKGRVLIIDDVISAGTSVRESIKLIEAEGATPAGVAIALDRMEKGT
                     GELSAVQEVEKQYGLPVAPIASLNDLFILLQNNPEFGQFLEPVRAYRRQYGVE"
     gene            11442..11876
                     /locus_tag="ACFOCA_000397"
     CDS             11442..11876
                     /locus_tag="ACFOCA_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HFC6987166.1"
                     /translation="MPACFCPHCKTRLWVKETQLNVAQGFVVCQKCEGLFKAKDHLAS
                     TKEPIFNDLPEAVSDVKLVHRIGTCAIGKKQISRDEIAGILNGGTTLHDTPPATAATP
                     AAAPQVAVPPAAPARQEGFNWTIATLFALIVLIMQLSYLVIL"
     gene            11873..13183
                     /gene="argA"
                     /locus_tag="ACFOCA_000398"
     CDS             11873..13183
                     /gene="argA"
                     /locus_tag="ACFOCA_000398"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HFC6987167.1"
                     /translation="MIVPDLFVAHFREAVPYIRQMRGKTLVAGIDDRLLEGDTLNKLA
                     ADIGLLSQLGIRLVLIHGARHFLDRHAAAQGRTPHYCRGLRVTDETSLEQAQQFAGTV
                     RSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
                     QLDAGNIVWLPPLGHSYSGKTFYLDMLQTAASVAVSLQAEKLVYLTLSDGISRPDGTL
                     AETLSAQEAQSLAEHAGGETRRLISSTVAALEGGVHRVQILNGASDGSLLQELFTRNG
                     IGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHD
                     GNLYGCAALKTFAEADCGEISCLAVSPQAQDGGYGERLLAHIIDKARSMGISRLFALS
                     TNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR"
     gene            13279..15294
                     /locus_tag="ACFOCA_000399"
     CDS             13279..15294
                     /locus_tag="ACFOCA_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family protein"
                     /protein_id="HFC6987168.1"
                     /translation="MKSYPDPYRHFENLDSAETQNFAAEANAETRARFLNNDKARALS
                     DGILNQMQDTRQIPFCQEHRARMYHFHQDAEYPKGVYRVCTAATYRSGYPEWKILFSV
                     ADFDELLGDDVYLGGVSHLVEKPNRALLTLSKSGGDTAYTLEVDLEAGELVEGGFHFP
                     AGKNQVSWRDENSVWVCPAWDERQLTESGYPREVWLVERGKSFEESLPVYQIDKDAMM
                     VNAWRYLDPQGSPIDLIEASDGFYTKTYLQVSAEGEAKPLNLPNDCDVVGYLAGHLLL
                     TLRKDWNRANQSYPSGALVAVKLNRGELGAAQLLFAPDETQALESVETTKRFVVASLL
                     ENVQGRLKAWRFADGKWQEVELPRLPSGALEMTDQPWGGDVVYLAAGDFTTPLTLFAL
                     DLNVMELTVMRRQPQQFDSDGIEVRQFWVMSSDGERIPYFHVGKNAAPDTPTLVYAYG
                     GFGVPELPHYLGSIGKYWLEEGNAFVLANIRGGGEFGPRWHQAAQGISKHKSVDDLLA
                     VVRDLSERGISSPQHIGLQGGSNGGLITAAAFVREPQSIGALVCEVPLTDMIRYPLLS
                     AGSSWTDEYGNPQKYEVCKRRLGELSPYHNLSDGIDYPPALITTSLSDDRVHPAHALK
                     FYAKLRETSPQSWLYSPDGGGHTGNGTQREAADELACVLLFLKEFLG"
     gene            complement(15408..16364)
                     /locus_tag="ACFOCA_000400"
     CDS             complement(15408..16364)
                     /locus_tag="ACFOCA_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6987169.1"
                     /translation="MNTAAIYRQYQTYVRSDKSGWALDGCSDSALIAQAKQPGLHLEM
                     CINRFDSGITLSRMRGGGTGAFPTEIHNFSHNCALFVMVSGQNRLQMGGREYRPSAGE
                     IWLVRGELADVSETLLPDNSGMCALHLDFSLEKLRRWHDEGLLDERLFSPQTIGRFAL
                     QRLAQNAAALTAAACPLLQRSFESDGFGLLADEAAALELSARLLRFTFRRHDNGYRRR
                     RIDEAADILQHEFARPLTIAEIARRVGLNECYLKRYFKAQTGETVAGCLRRLRLEHAL
                     ALIESGSTVQAAMHFCGYRHAGRFNEAFRRHYGFLPSDVKKC"
     gene            16600..17565
                     /locus_tag="ACFOCA_000401"
     CDS             16600..17565
                     /locus_tag="ACFOCA_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6987170.1"
                     /translation="MKPRFYWAACAVLLTACSPEPAAEKTVSAASASAATLTVPTARG
                     DAVVPKNPERVAVYDWAALDTLTELGVNVGATTAPVRVDYLQPAFDKAATVGTLFEPD
                     YEALHRYNPQLVITGGPGAEAYEQLAKNATTIDLTVDNGNIRTSGEKQMETLARIFGK
                     EARAAELKAQIDALFAQTREAAKGKGRGLVLSVTGNKVSAFGTQSRLASWIHGDIGLP
                     PVDESLRNEGHGQPVSFEYIKEKNPDWIFIIDRTAAIGQEGPAAVEVLDNALVRGTNA
                     WKRKQIIVMPAANYIVAGGSRQLIQAAEQLKEAFEKAEPVAAGKE"
     gene            18122..18445
                     /locus_tag="ACFOCA_000402"
     CDS             18122..18445
                     /locus_tag="ACFOCA_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003775941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFC6987171.1"
                     /translation="MQNETINPKQHLAAIKEYWQPEIINRHGFQFRLVKLLGDYGWHT
                     HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSLVLIELSD
                     SSEAV"
     gene            18559..20736
                     /gene="tdfF"
                     /locus_tag="ACFOCA_000403"
     CDS             18559..20736
                     /gene="tdfF"
                     /locus_tag="ACFOCA_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010950972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent iron piracy receptor TdfF"
                     /protein_id="HFC6987172.1"
                     /translation="MTRFKYSLLFAALLPVYAQADVSVSDDPKPQESTELPTITVTAD
                     RTASSNDGYTVSGTHTPLGLPMTLREIPQSVSVITSQQMRDQNIKTLDRALLQATGTS
                     RQIYGSDRAGYNYLFARGSRIANYQINGIPVADALADTGNANTAAYERVEVVRGVAGL
                     LDGTGEPSATVNLVRKRPTRKPLFEVRAEAGNRKHFGLGADVSGSLNTEGTLRGRLVS
                     TFGRGDSWRQRERSRDAELYGILEYDIAPQTRVHAGMDYQQAKETADAPLSYAVYDSQ
                     GYATAFGPKDNPATNWANSRHRALNLFAGIEHRFNQDWKLKAEYDYTRSRFRQPYGVA
                     GVLSIDHNTAATDLIPGYWHADPRTHSASVSLIGKYRLFGREHDLIAGINGYKYASNK
                     YGERSIIPNAIPNAYEFSRTGAYPQPASFAQTIPQYGTRRQIGGYLATRFRAADNLSL
                     ILGGRYSRYRTGSYDSRTQGMTYVSANRFTPYTGIVFDLTGNLSLYGSYSSLFVPQSQ
                     KDEHGSYLKPVTGNNLEAGIKGEWLEGRLNASAAVYRARKNNLATAAGRDLSGNTYYR
                     AANQAKTHGWEIEVGGRITPEWQIQAGYSQSKTRDQDGSRLNPDSVPERSFKLFTAYH
                     FAPEAPSGWTIGAGVRWQSETHTDPATLRIPNPAAKARAADNSRQKAYAVADIMARYR
                     FNPRAELSLNVDNLFNKHYRTQPDRHSYGALRTVNAAFTYRFK"
BASE COUNT         4695 a         6404 c         5637 g         4058 t
ORIGIN      
        1 tatacttcaa tctgccaaac agatcgaaca gagaaactct gtccgtcaaa acatcatgca
       61 gccatcgcct tgaacacttc aaccgcaacc gcaaccgttt cgtcaatcag ctcgggcgta
      121 tgcgcggcag aaacgaaacc tgcttcataa gcggacgggc cgaaggcaat gccgcggtcg
      181 agcataccgt ggaagaagcg tttgaaagcg tcaatattgg aacgcgccat atcggcataa
      241 tttcgcggcg cgtgtgcggc gaaatacaga ccgaacatac cgcccacgct gtcggcggtg
      301 aactcgatgc ccgccgcatc cgctgccgtc cgaaaacctt gaaccaactg ttcggtacgc
      361 gccgtcaggt tttcataaaa cccttcgcgg cggatgattt ccagcgtttt caaaccggcg
      421 gcgacggcaa tcgggttgcc cgacaaggtg cctgcctgat acacgccgcc cagcggggaa
      481 atacattcca taatgtcttt gcgtccgccg aacgcggcaa gtggcatacc gccgccgatg
      541 actttgccca tcgtggtcag gtcgggcgtg atgccgtgca gcgattgtgc gccgccgagc
      601 gcgacgcgga aaccggtcat cacttcgtcg taaatcaaca ctgcgccgtg tttttcggtc
      661 aattcgcgca gggctttgac gaaggcttca gacggcctaa ccagattcat attgccgaca
      721 aaaggctcca aaatcacaca ggcaatgtca ttgccgcttt gagcaaaggc ttcttcgagt
      781 tgggcgatgt tgttgtattc gaggactaaa gtgtgtttgg taaagtcggc aggcacaccg
      841 gcggaagagg gattaccgaa ggtgagcaga ccgctgcctg ctttcaccaa caggctgtcg
      901 gaatggccgt ggtagcagcc ttcaaatttg atgattttgt cacggccggt aaagccgcgt
      961 gccagacgga tggcggtcat ggtggcttcg gtaccggagc tgacaaggcg cagccgttcg
     1021 acggacggca tgattttggc gatttcttcg gcaatgacga tttcgccttc ggtaggcgcg
     1081 ccgaacgaca aaccgcccaa ggcagcttcg cgcatggctt cgatgacttc ggggtgcgcg
     1141 tgtccgacaa tcgcgggccc ccacgaaccg acatagtcgg tgtagcgcgt gccgttttcg
     1201 tcccaaacat acgcgccttc ggcttttttg atgaagcgcg gcacgccgcc gacgctgccg
     1261 aatgcgcgga cgggggaatt cacgccgccg gggatgatgg ctttggcgcg gtcgaataaa
     1321 atttcgttac ggttcatatt tatcctcaaa tgccgtctga acggcaggtt tcgggcttag
     1381 aagcagaaag tcccatttta tcatttttca ggttgcgaca aggatttgcc tgcttctttg
     1441 cggatgacgc caaccgcatc ccggatgacg gaacgctcgt ctttttccac tttatgtgta
     1501 aagcggtagt cccggacaac tccttcccag tcgtaatcca cacaccactc ccaatgccgg
     1561 cgttctgatt tcatataaat gaaattggtc ggcaaaaaat tataaatcgg caggctgact
     1621 tcatgatagg cataacaacc gaaagggttg cgcttcccga aacgtgcctc tacctccgcc
     1681 cgagtcgttt tgcctttaac aaccgtttgt gcgattccct cttccgtctg atatagtgga
     1741 ttaacaaaaa tcaggacaag gcgacgaagc cgcagacagt acaaatagta cggcaaggcg
     1801 aggcaacgct gtactggttt ttgttaatcc actataacgc aggaactgat gttccctgtc
     1861 gccgaaattg ctggtacacg cacacagcag caatgccgcc cacacagccg gtttcataca
     1921 cacctcccat taaagccaaa cattatacag ccgttctgac cgattaaatt catattttaa
     1981 aacaatattc tgtttacaaa acccacatcg tgctataatc cgcaccgatt ttcagacggc
     2041 atcgtcatgc cgtctgaaat tttttcattc caacaaccat cagccccgcg attacggctg
     2101 cctgagaaag acacaaacca tgaaaaaagt atttatccgt accttcggct gccagatgaa
     2161 cgaatacgac agcgacaaaa tgctcgccgt cctcgccgaa gaacacggcg gcatcgaaca
     2221 ggttacccaa gccgacgaag ccgacatcat cttgttcaac acctgctccg tgcgcgaaaa
     2281 agcacaggaa aaagtgttct ccgatttggg gcgcgtgcgt ccgctcaaag aaaaaaaccc
     2341 cggcctcatc atcggcgttg ccggctgcgt cgcctcgcaa gaaggcgaaa acatcatcaa
     2401 acgcgcgcct tatgttgacg tggtcttcgg cccgcaaacg ctgcaccgcc tgcccaaaat
     2461 gattgtggac aaagaaacca gcgggctgtc gcaagtcgat atttccttcc ccgaaatcga
     2521 aaaattcgac cacctgccgc ccgcccgcgt cgaaggcggc gcggcatttg tatcgattat
     2581 ggaaggctgt tccaaatact gctcattctg cgtcgtcccc tacacgcgcg gcgaagaatt
     2641 ctcccgcccg ctcaacgacg tattgacaga aatcgccaac cttgcccagc aaggcgtgaa
     2701 agaaatcaac ctcttgggac aaaacgtcaa cgcctatcgc ggcgaaatgg acgacggcga
     2761 aatctgcgac ttcgccaccc tgctgcgcat cgtccacgaa atccccggca tcgaacgtat
     2821 gcgcttcacc accagccacc cgcgcgagtt taccgactcg attatcgagt gctaccgcga
     2881 cctgcccaaa ttggtttccc acctgcacct gccgattcaa agcggttccg accgcgtatt
     2941 gagcgcgatg aaacgcggct acaccgcttt ggaatacaaa tccatcatcc gcaaactgcg
     3001 tgccatccgt cctgatttat gcctgagcag cgatttcatc gtcggcttcc ccggcgagac
     3061 cgaacgcgag ttcgagcaaa ccttgaaact ggtgaaagac attgccttcg acttgagctt
     3121 cgtgtttatt tacagtccgc gccccggcac gcctgccgcc aacctgcacg acgacacgcc
     3181 gcacgaagaa aaagtgcgcc gcctcgaagc cttgaacgaa gtcatcgaag ccgaaaccgc
     3241 gcgcatcaac caaaccatga tcggcacggt tcaacgctgc ctggtcgaag gcatctccaa
     3301 aaaagacccc gaccaactgc aagcccgtac cgccaacaac cgcgtcgtca acttcaccgg
     3361 cacgcccgac atgattaacc aaatgatcga tttggaaatc accgaggcct acaccttctc
     3421 cctgcgcggc aaagttgtcg aagcctaaac cctcacgccg aaaaaatgcc gtctgaagcg
     3481 tttcagacgg cattttgcct tgtatcggca gacgacggcg cggccgggcg gcttaatttg
     3541 ccgcatcccg atccgacagc cacgcgcgca cacgccgttc caccgcttcg gcactcaagc
     3601 ccaaatcgtc taaaagtttt ttcggatcgc cgtgtccggt tacggtatcg gcaacgccca
     3661 aaagcaaaac gggtttgcag ataccgtgtt tcgccaatac ttccagcacc gcgccgcctg
     3721 cgccgccctg ttcggcgttt tcttcaaggg taacgatgcg gtcgtggctt cgggcaaggc
     3781 ggacaatcaa ctcttcgtct atcggtttga caaagcgcat atcggcgacg gtggcgttca
     3841 gttttccggc gaccgccaat gcgggggcga ccatactgcc gaaggcaatg aatgcggttt
     3901 tcccaccttc gcggcggata atgcccttgc cgatttccac ggtttccatg ccgtctgaaa
     3961 ccggcgcgcc cgtacccgtg ccgcgcggat agcggacggc ggcgggcgca tccgcctgat
     4021 agcaggtcga aagcagcagg cggcattcgt tttcatcgct cggcgcggcg acaatcatat
     4081 tcggaatgca acgcaagaag ctcaaatcgt acaaaccggc gtgggtcggg ccgtccgcgc
     4141 cgacgatgcc cgcgcggtcg acggcaaaca aaacgggtag gttttgcagg gcgatatcgt
     4201 gcaccagttg gtcgtaggcg cgttgtaaaa aggtggaata aatcgccacg acgggcttca
     4261 tgccttcgca cgccaaaccg ccggcaaagg taacggcgtg ctgctcggca ataccgacat
     4321 cgaaataacg gtcggggaat cgttgttcaa actccaccag tccgctgccc tcgcgcatcg
     4381 cgggcgtgat ggcgatcaaa cgctcgtctg ccgccgcccg gtcgcacagc catttgccga
     4441 acacttgggt ataggtcggt ttggcgacgg gcttgggttc tttttcagac ggcatttgcg
     4501 ccgcgccttc tttaggcagc ttggcgacgg cgtggtattt gacggggtcg ttttcggcga
     4561 gtttgtagcc gttgcctttt ttggtgatga cgtgcagaag ctgagggcct ttgcggctgc
     4621 gcaagtcttt caatacgtcc accagatttt cgacgttgtg tccgtccacg gggccggtat
     4681 agcggaagcc gaagttttca aacaaagaca gcgactgttt ggcgtgttcg gcttcttcgg
     4741 caagggtttt gattttgtgt tcgacttttt gggcaaactc catcgcgccg ggtattttgt
     4801 ctaatacctt gcccgtttgc gctttgacgg tactcaacag gccgtgcata tcgcgcacga
     4861 cgttgctggc aaggtatttc ggcagcgcgc cgacgttggg ggaaatcgac atttcgttgt
     4921 cgttgaggac gaccagcaaa tccacatcca tatcgcctgc gcagttcagg gcttcaaacg
     4981 cctgaccagc cgtcatggct ccgtcgccga tgatggcgac gctgcggcgg ttgttgccca
     5041 actgtttgtc cgcaacggcc atgcccaagg ccgcgccgat ggatgtggaa gaatgcccta
     5101 cgccgaacgc gtcgtattcc gactcgctgc gttttgggaa gccagctaaa ccgccgtatt
     5161 ggcgcatggt gtgcatctgg tttttcctgc ctgtcaggat tttgtgcgga tagctttggt
     5221 gtccgacatc ccacaccagc ttgtcttcgg gcgtgtcgta cacatagtgc agggcgatgg
     5281 tcagttcgac cgcgcccaga ttgctggcga aatgcccgcc ggtctgcccg acagattcca
     5341 gcagaaaggc acgcaactcg ccggcaaggc gcggcagctg ttttttgtcc agacggcgca
     5401 aatcttgcgg gctgtcaatc aggtcgagta gggggcttgg gttcatggtg tgtctttttt
     5461 atgtgtcgtc cgggtgcaac ggtcaattat atatcaagag cgtgcggctg acggctgatt
     5521 ttgccgtatg tcattcgtcc cgccgcttgg cgcgcgggtg ggcttcgtca tacaggcggg
     5581 cgatgtggtc gaaatcgagt ttggtgtaaa tctgcgtggt cgaaaggctg ctgtgtccga
     5641 gcagctcctg caccgcccgg atgtcgcgcg aagcctgcaa caggtgtccg gcatagctgt
     5701 ggcgcatcat atgcggcgaa acgtgtctgc cgtctccgtt ttgcgccgcc cattgcgcca
     5761 aacgtttttg gatttggcgt tggctcaggc gcgtgccgtt cctgccggta aacagggctt
     5821 tgccgtccga tgccgtctga cgcagcggca gatagttttt cagggcttcc acgcttttgc
     5881 cggtcagcgg cacctgccgc tgcttgcgcc ctttgccggt aacgtgtacc cacgcctcgt
     5941 ccaaatagac atcatctgca ttcaagccgt gtatctcgct cacgcgcaaa ccgctgccgt
     6001 acatcagctc gaacagggcg tgatcgcgca ccgccagcgg gtcgccgccg tccacgggca
     6061 aatccagcat ccggttcagc cattcctgcg gcagggcttt gggtacgcgc tcgggctgct
     6121 tcggcggttt gatgtcggcg gtcgggtcgg tatgcagcag accgcgttcc accagccaaa
     6181 cacaatactg ccgccaagac gacagcttgc gcgccagcgt ccgcgcattc aaaccgcgct
     6241 gcgacagccg ccgcaacgcc gccgtaaaat cgcgccgcga caagtcctgc ggcacgccgc
     6301 ctgcatcttc agacggcatt tgtgccaaca gcgcaaacag ttcttccaaa tcgcgccggt
     6361 atgccgccac cgtgtgctcc gacttgccct cgcgcacgat gttttccaaa taagcgtcaa
     6421 aatgcgccgc aaacccgtcc aaaaccataa ccgccccaca caaatatcaa aaaaacagtg
     6481 aaaacattat cataaacgac acaccaaaac cccgaaccgc ccaaaatccg acccgtccgc
     6541 ccgccgttat cgttaacata aaatcaatga gccgtttatg gttttttgcc gcaaaaaaca
     6601 ttataatccg ccttatttac ctattgccca aggagacaca aatggcactc gtatccatgc
     6661 gccaactgct tgatcatgct gccgaaaaca gctacggcct gcccgcgttc aacgtcaaca
     6721 acctcgaaca aatgcgcgcc attatggaag ccgccgacca agtcaacgcg cccgtcatcg
     6781 tacaggcgag tgcaggtgcg cgcaaatatg cgggcgcgcc gtttttgcgc cacctgattc
     6841 tggcggctgt cgaagaattt ccgcacatcc ccgtcgtgat gcaccaagac cacggcgcat
     6901 cgcccgacgt gtgccaacgc tccatccaac tgggcttttc ctccgtgatg atggacggct
     6961 cgctgatgga agacggcaaa accccttctt cttatgaata caacgtcaac gccacccgta
     7021 ccgtggttaa tttctcccac gcttgcggcg tatccgtcga aggcgaaatc ggcgtgttgg
     7081 gcaacctcga aactggcgaa gccggcgaag aagacggtgt aggcgcagtg ggcaaacttt
     7141 cccacgacca aatgctcacc agcgtcgaag atgccgtgcg tttcgttaaa gataccggcg
     7201 ttgacgcatt ggcgattgcc gtcggcacca gccacggcgc gtacaaattc acccgtccgc
     7261 ccacaggcga cgtgttgcgt atcgaccgca tcaaagaaat ccaccaagcc ctgcccaata
     7321 cacacatcgt gatgcacggt tccagctccg ttccgcaaga atggctgaaa gtcatcaacg
     7381 aatacggcgg caatatcggc gaaacctacg gcgtgccggt tgaagaaatc gtcgaaggca
     7441 tcaaacacgg cgtgcgcaaa gtcaacatcg ataccgactt gcgccttgct tccaccggcg
     7501 cggtacgccg ctaccttgcc gaaaacccgt ccgacttcga tccgcgcaaa tatttgagca
     7561 aaaccattga agcgatgaag caaatctgcc tcgaccgcta cctcgcgttc ggttgcgaag
     7621 gtcaggcagg caaaatcaaa ccggtttcct tggaaaaaat ggcaaaccgt tatgccaagg
     7681 gcgaattgaa ccaaatcgtc aaataacagg ttgcttgtaa acaaaatgcc gtctgaaccg
     7741 ttgttcggac ggcatttgat ttttgcttct ttgacctgcc tcattgatgc agtatgcaaa
     7801 aaaagatacc ataaccaaaa tgtttatata ttatctattc tgcgtatgac taggagcaaa
     7861 cctgtgaacc gaactgcctt ctgctgcctt tctttgaccg ccgccctgat tctgaccgcc
     7921 tgcagcagcg gaggcggcgg tgtcgccgcc gacatcggcg cggggcttgc cgatgcacta
     7981 accgcaccgc tcgaccataa agacaaaagt ttgcagtctt tgacgctgga tcagtccgtc
     8041 aggaaaaacg agaaactgaa gctggcggca caaggtgcgg aaaaaactta tggaaacggc
     8101 gacagcctca atacgggcaa attgaagaac gacaaggtca gccgcttcga ctttatccgt
     8161 caaatcgaag tggacgggca gctcattacc ttggagagcg gagagttcca aatatacaaa
     8221 caggaccact ccgccgtcgt tgccctacag attgaaaaaa tcaacaaccc cgacaaaatc
     8281 gacagcctga taaaccaacg ctccttcctt gtcagcggtt tgggtggaga acataccgcc
     8341 ttcaaccaac tgcccagcgg caaagccgag tatcacggca aagcattcag ctccgacgac
     8401 ccgaacggca ggctgcacta ctccattgat tttaccaaaa aacagggtta cggcagaatc
     8461 gaacacctga aaacgcccga gcagaatgtc gagcttgcct ccgccgaact caaagcagat
     8521 gaaaaatcac acgccgtcat tttgggcgac acgcgctacg gcggcgaaga aaaaggcact
     8581 taccacctcg cccttttcgg cgaccgcgcc caagaaatcg ccggctcggc aaccgtgaag
     8641 ataagggaaa aggttcacga aatcggcatc gccggcaaac agtagcattt gaaaaatgcc
     8701 gtccgaacac aataatttac cgttcggacg gcatttttgc gccataccgc cctaggacac
     8761 gacggcacgg caggcaagcc gatttcacta tataatgccg tctgaaccaa cgagagaatg
     8821 ccatgcaagc tgatttcaac cgccccgtcc tcgccgtcga taccggaact tcctatttgt
     8881 cgctcgcgct gcgcgccgac ggcgaaaccc gtctgttcca tcaggaagtc ggcagccgcc
     8941 agtccgcact gatcctgccg gaaatccgca ccctattccg aaatgcaggc attaccgccg
     9001 ccgatttggg ggcgattgtt tatgcgaaag gccccggcgc gtttacggga ctgcgtatcg
     9061 gtatcggcgt ggcgcaaggt ttggcaacgc cgtttgatac gcctttaatc ggcatcccca
     9121 cgctcgatgc cgccgcctcg ctgccgccgc cgcaaagctg catactcgcc gctgcggacg
     9181 cgcgtatggg cgaagtgttt tatgcgtggt tcgacacgct gaaccgccgc cgtttgagcg
     9241 attatcaggt cgggcgggcg gcagacatcc ggctgccgga gggatgtgcc ttttcagacg
     9301 gcataggcag cgcgttcgcg ttggaagaaa cgccgccgtt ttcaggcaaa cccgatatgc
     9361 cgaccgccgc cgacttcctc aatctggcgg ctgaaggcgg ttttcccgcc gtcgctgcgg
     9421 cacacgccga gctgctctac gtccgcaaca aaatcgccct gactgccaaa gaacaggcgg
     9481 aacggagggc gcgcctgtga acatccgccg cgccgtttat gccgattgcg cggcactcgc
     9541 cgcactcgat gccgtctgca acccgtccgc gtggacgcaa cgccaatttg agtctgcatt
     9601 ggtttcgctg tccgaacagg ttttcctcgc ggaaaaagac ggcgggttgg ccgcctttat
     9661 cgtttggcag aacctgcccg acgaatccga actgcacctg attgccaccg cgcccgaatg
     9721 ccgccgccaa ggaattgcgt ccgccctgct cgaatattgg ttcgcacatc tgcccgaagg
     9781 cacgcaacgc ctgctgctcg aagtccgcgc aggcaacacc gccgcgcagg cactgtacgc
     9841 ggcgcacggc ttcagcattg cgggcaggcg gaaaaactat taccgcgcca ccgacgggca
     9901 aaccgaagat gccgtcttaa tggagaaaat atgttaagcg cgcgctacct ccacctgcac
     9961 gaagctttgg gtttgggtcc gatgtggctg aaacaggccg ctgccgtcct gccgcccaaa
    10021 aacacacccg caaccccggc acaggcacgt cctcaaaccg tccgcgccgc cccgatccgc
    10081 ccttcccaac cccataacgg tcaggcgcgg ctcgaaacga tgaaagcgtt ggaaaccgcc
    10141 gccgtaccta cgcgcaaacc cgcgcctgaa accgaaacgc ctctgcccgg cctttcagac
    10201 ggcatcgccc ccgttcccgc cgcttcgggc atcaccaagc ttgccgtcgt cagcctttgc
    10261 ccaccgatcg aggatgcggt ttacgggcaa ctgttccacg gcaaagcggg tgtcctgctt
    10321 gacaacatac tcaaagccgt aggactggat gccgcttatg tacacaagac cagctgggtg
    10381 aaaaccgccg ccgtcggcaa cccgatgccg tctgaacagg ccgtcgcgaa tgcgctgggt
    10441 caaatcgcca gggaactcga cggctgccgt gcccccgccg tccttttcct cgggcaggct
    10501 tttgtccagc ctgaacggca aacgatgatt gaaactttgt gcggcagccg tcccttcttc
    10561 atcatcgacc atcccgctcg gcttttacgc caacccgaac ttaaagcccg aaactggcag
    10621 gtgttgaaac agttgaaaca cgccttgcag gcaggcggca gttgaagcag gccgcacggg
    10681 gcggtagaat cgcaactgcg tcccaatatc tgacagaaag cacaaaatga ccgatttccg
    10741 ccaagatttc ctcaaattct ccctcgccca aaatgttttg aaattcggcg aattcaccac
    10801 caaagccgga cggcggtcgc cctatttctt caatgccggc ctctttaacg acggcttgtc
    10861 cacgctgcaa ctggcaaaat tctatgcaca atccatcatt gaaagcggca tccgattcga
    10921 tatgctgttc ggtcccgcct acaaaggtat tattttggcg gcggcaaccg cgatgatgct
    10981 ggcggaaaaa ggcgtgaacg tcccgtttgc ctacaaccgc aaagaagcca aagaccacgg
    11041 cgaaggcggc gtgttggtcg gcgcgccgct taaagggcgc gtgctgatta tcgacgacgt
    11101 gatttccgcc ggcacatccg tacgcgaatc gatcaaactg attgaagcgg agggtgcaac
    11161 ccccgccggt gtcgccatcg cgctcgaccg catggaaaaa ggcacgggtg aattgagcgc
    11221 ggttcaggaa gtggaaaaac aatacggtct gcccgtcgcc cccatcgcca gcctgaacga
    11281 tttgtttatt ctgttgcaaa acaaccccga attcggacag ttcctcgaac ccgtccgagc
    11341 ctaccgtcgg cagtacggcg tagaataaaa acaaagcata tgccgtccga accgccttac
    11401 gcctcagacg gcatcaaacc tgacacacac gaggaaatac catgcccgcc tgtttctgcc
    11461 cccactgcaa aacccgtctc tgggtcaaag aaacccaact caatgtcgcc caaggcttcg
    11521 tcgtctgcca aaaatgcgaa ggactgttta aagccaaaga ccatttggca agcacgaaag
    11581 aacccatatt caacgatttg cccgaggctg tttcggatgt caaactcgtt caccgcatcg
    11641 gcacgtgcgc cattggcaag aaacagattt cccgcgacga aatcgccggc atcctcaacg
    11701 gcggtacaac cctgcacgat acgccgcccg caaccgccgc cacccctgcc gccgcaccgc
    11761 aggttgccgt accgcccgcc gcgcctgccc gtcaggaagg gttcaactgg acgattgcaa
    11821 ccctgtttgc ccttatcgtc ctcattatgc agctttccta cctcgtcatc ctatgatcgt
    11881 gcccgacctc tttgtcgccc acttccgcga agccgtcccc tacatccgcc aaatgcgcgg
    11941 caaaacgctg gtcgccggca tagacgaccg cctgctcgaa ggtgatacct taaacaagct
    12001 cgccgccgac atcgggctgt tgtcgcaact gggcatcagg ctcgtcctca tccacggcgc
    12061 gcgccacttc ctcgaccgcc acgccgccgc gcaaggccgc acgccgcatt attgccgggg
    12121 cttgcgcgtt accgacgaaa cctcgctcga acaggcgcag cagtttgccg gcaccgtccg
    12181 cagccgtttt gaagccgcat tgtgcggcag cgtttccggg ttcgcgcgcg cgccttccgt
    12241 cccgctcgta tcgggcaact tcctgaccgc ccgtccgata ggtgtgattg acggaaccga
    12301 tatggaatac gcgggcgtta tccgcaaaac cgacaccgcc gccctccgtt tccaactcga
    12361 cgcgggcaat atcgtctggc tgccgccgct cggacattcc tacagcggca agaccttcta
    12421 tctcgatatg cttcaaaccg ccgcctccgt cgccgtctcg cttcaggccg aaaaactcgt
    12481 ttacctgacc ctttcagacg gcatttcccg ccccgacggc acgctcgccg aaaccctctc
    12541 ggcacaggaa gcgcaatcgc tggcggaaca cgccggcggc gaaacgcgac ggctgatttc
    12601 gtccaccgtt gccgcgctcg aaggcggcgt gcatcgcgtc caaatcctca acggtgcctc
    12661 cgacggcagc ctgctgcaag aactcttcac ccgcaacggc atcggcacat ccattgccaa
    12721 agaagccttc gtctccatcc ggcaggcgca cagcggcgac atcccgcaca tcgccgccct
    12781 catccgcccg ctggaagaac agggcatcct gctgcaccgc agccgcgaat acctcgaaaa
    12841 ccacatttcc gaattttcca tcctcgaaca cgacggcaac ctgtacggtt gcgccgccct
    12901 gaaaaccttt gccgaagccg attgcggcga aatctcctgc cttgccgtct cgccgcaggc
    12961 acaggacggc ggctacggcg aacgcctgct tgcccacatt atcgataagg cgcgcagtat
    13021 gggcataagc aggctgttcg ccctctccac aaataccggc gaatggtttg ccgaacgcgg
    13081 ctttcagacg gcatcggaag acgagttgcc cgaaacgcgg cgcaaagact accgcagcaa
    13141 cggacgaaac tcgcatattc tggtacgtcg cctgcaccgc tgaccgcaac ggaaagccgc
    13201 cgcagaaatg ccgtctgaac cccgtttcag acggcatttc cccgattata aagacctgcc
    13261 caaccctcaa ggaccccgat gaaatcctac cccgacccct accgccattt tgaaaacctc
    13321 gattccgccg aaacgcaaaa cttcgctgct gaagcgaatg ccgaaacgcg cgcgcgtttt
    13381 ttaaacaacg acaaggcgcg cgcgctttca gacggcattt tgaatcaaat gcaggacacg
    13441 cggcagattc cgttttgtca ggaacaccgc gcgcggatgt accatttcca tcaggacgcg
    13501 gaatatccga agggcgtgta ccgcgtgtgc acggcggcga cctaccgttc gggctatccg
    13561 gagtggaaaa tcctgttttc agtggcggac ttcgacgaat tgctcggcga cgatgtatat
    13621 ttgggcggcg tgtcgcactt ggtggaaaag cccaaccgcg cgttgttgac actaagcaaa
    13681 tcaggcggcg atacggcgta cacgctggaa gtggatttgg aagcagggga attggtagaa
    13741 ggtggttttc actttccggc aggcaaaaac caagtgtcgt ggcgcgatga aaacagcgtg
    13801 tgggtgtgtc cggcttggga cgaacgccag ttgaccgaat cgggctatcc gcgtgaggtg
    13861 tggctggtgg aacgcggcaa gagtttcgag gaaagcctgc ctgtgtatca aatcgataaa
    13921 gatgcaatga tggtgaacgc gtggcgttat ctcgatccgc agggttcgcc gattgatttg
    13981 attgaagcgt cggacggttt ttacaccaaa acctatttgc aggtgtcggc cgaaggcgag
    14041 gcgaaaccgt taaacctgcc caacgattgc gatgtggtcg gctatctggc ggggcatctt
    14101 ttgctgacgc tgcgcaagga ctggaaccgc gcgaaccaaa gctatccgag cggtgcgctg
    14161 gtggcggtga agctgaatcg gggtgaactc ggggcggcgc agcttttgtt tgcgcctgat
    14221 gaaacgcagg cattggaaag cgtggaaacg accaagcgtt ttgtggtggc gagcctgctg
    14281 gaaaacgtac aaggccgtct gaaagcgtgg cgttttgccg acggcaaatg gcaggaagtc
    14341 gaactgccgc gcctgccttc gggcgcgttg gaaatgaccg accagccttg gggcggcgac
    14401 gtggtttacc ttgccgccgg cgatttcacc acaccgctga cgctgtttgc gctggatttg
    14461 aacgtgatgg aactgaccgt catgcgccgc cagccgcagc agttcgattc agacggcatc
    14521 gaagtgcggc agttttgggt gatgtcgtcc gacggcgaac gcatccctta tttccacgtc
    14581 ggcaaaaacg ccgcgcccga cacgccgacg ctggtttatg cctacggcgg tttcggcgta
    14641 cccgagctgc cgcattatct gggcagcatc ggcaaatact ggctggaaga gggcaacgcc
    14701 ttcgtgttgg cgaacatacg cggcggcggc gagttcggcc cgcgctggca tcaggcggcg
    14761 cagggaatca gcaaacacaa aagcgtcgat gatttgcttg ccgtcgtgcg cgatttgtcc
    14821 gagcgcggca tcagttcgcc ccaacacatc ggtttgcagg gcggcagcaa cggcggcctg
    14881 attaccgccg ccgccttcgt gcgcgaaccg caaagcatag gcgcactggt gtgcgaagtg
    14941 ccgctgaccg acatgatccg ttatccgctg ctctccgccg gttcaagctg gacagacgaa
    15001 tacggcaatc cgcaaaaata cgaagtctgc aaacgccggt tgggcgaatt gtcgccgtat
    15061 cacaatcttt cagacggcat cgattatccg cccgcgctca tcaccaccag cctcagcgac
    15121 gaccgcgtcc atcccgccca cgcgctcaag ttttacgcca aactgcgcga aacctcgccg
    15181 caatcttggc tctactcgcc tgacggcggc ggccataccg gcaacggcac gcagcgcgaa
    15241 gccgccgacg aactcgcctg cgtgttgctg tttttgaaag agtttttggg ctaagggcgg
    15301 ggagcggcac tgccgccgcg aatgaaaaaa ggtcgtctga aactgctttt tcagacgacc
    15361 ttttttaatg gttgtttcaa atcaaaatat ctatgccgcc ggccccatca gcacttcttc
    15421 acatccgaag gcaaaaatcc gtaatgccgt ctgaacgctt cgttgaaccg tcccgcgtgg
    15481 cggtagccgc aaaagtgcat ggcggcttgg acggtgctgc cggattcgat gagggcgagc
    15541 gcgtgttcca gccgcaggcg gcgcaggcat ccggcgacgg tttcgccggt ttgcgctttg
    15601 aaatagcgtt tcaggtagca ttcgttcagt ccgacgcggc gggcgatttc ggcgatggtc
    15661 agcggacggg cgaattcgtg ttgcaggatg tcggcggctt cgtctatgcg ccgacggcgg
    15721 taaccgttgt cgtggcggcg gaaggtgaag cgcaataatc gggcggagag ttccagcgcg
    15781 gcggcttcgt cggcaagcag gccgaagccg tccgattcga acgagcgttg cagcagtggg
    15841 caggccgccg ccgtcagtgc cgctgcgttt tgcgccagcc gttgcagggc gaatcggcct
    15901 atcgtttgcg gcgaaaacag gcgttcgtcc agcaagcctt cgtcgtgcca gcggcgcagt
    15961 ttttccagcg aaaaatccaa atgcagcgcg cacatgccgc tgttgtcggg cagcagggtt
    16021 tcggatacgt ccgccaactc gccgcgtacc agccagattt cgccggcaga cgggcggtat
    16081 tccctgccgc ccatttgtaa ccggttctgc cccgacacca tgacgaacaa ggcgcagttg
    16141 tggctgaaat tgtggatttc ggtgggaaac gcgcccgttc cgccgccgcg catccgcgac
    16201 aaggtgatgc ccgagtcgaa gcggttgatg cacatttcca gatgcaaacc gggctgtttt
    16261 gcctgcgcaa tgagcgcgct gtcggaacag ccgtccaacg cccagccgga tttatcggag
    16321 cggacatagg tttggtactg gcggtagatg gcggcggtgt tcatgattgg ataggaacga
    16381 gttgtctaac aaatgaatta aataggaatt attaccaata atcaagcgca gggattggtt
    16441 gaaacggaaa aggtcgtctg aaagggtgtt tcagacgacc ttttccgtat cgggaatttg
    16501 ttttgccgta tcgggaattt tgcgttttgc ggcgtggttt ctgcaggttg tttgcttaat
    16561 aataaacatt cttattcgta tgcaaaggaa ccgcacaccg tgaaaccgcg tttttattgg
    16621 gcagcctgcg ccgtcctgct gaccgcctgt tcgcccgaac ctgccgccga aaaaactgta
    16681 tccgccgcat ccgcatctgc cgccacactg accgtgccga ccgcgcgggg cgatgccgtt
    16741 gtgccgaaga atcccgaacg cgtcgccgtg tacgactggg cggcgttgga tacgctgacc
    16801 gaattgggcg tgaatgtggg cgcaaccacc gcgccggtgc gcgtggatta tttgcagcct
    16861 gcatttgaca aggcggcaac ggtggggacg ctgttcgagc ccgattacga agccctgcac
    16921 cgctacaatc ctcagcttgt cattaccggc gggccgggcg cggaagcata tgaacagttg
    16981 gcgaaaaacg cgaccaccat agatctgacg gtggacaacg gcaatatccg caccagcggc
    17041 gaaaagcaga tggagacctt ggcgcggatt ttcggcaagg aagcgcgcgc ggcggaattg
    17101 aaggcgcaga ttgacgcgct gttcgcccaa acgcgcgaag ccgccaaagg caaaggacgc
    17161 gggctggtgc tgtcggttac gggtaacaag gtgtccgcct tcggcacgca gtcgcggttg
    17221 gcaagttgga tacacggcga catcggccta ccgcctgtag acgaatcttt acgcaacgag
    17281 gggcacgggc agcctgtttc cttcgaatac atcaaagaga aaaaccccga ttggattttc
    17341 atcatcgacc gtaccgccgc catcgggcag gaagggccgg cggctgtcga agtattggat
    17401 aacgcgctgg tacgcggcac gaacgcttgg aagcgcaagc aaatcatcgt catgcctgcc
    17461 gcgaactaca ttgtcgcggg cggctcgcgg cagttgattc aggcggcgga gcagttgaag
    17521 gaggcgtttg aaaaggcaga acccgttgcg gcggggaaag agtagggagt cgtctgaaaa
    17581 cggagtttcc gaaggaagcg gggggtttct gcgaagctaa agtgcggttt caacgaattg
    17641 aaaagcagcc tgtatgttga aaataccgct caagcaaacc tacggtttgc cgccctctcc
    17701 ctagccctct cccacaggga gaggggattg gggtgcaggc tgcctttaag gtttaggcaa
    17761 atttttaact tcgttgaagc tgcgatttca gaagctccgt tttagcttcg cagaaactcc
    17821 gcttccttcg aaagctccgt tttcagacga ccttttggag taccgcaggc acacgcatcg
    17881 aacggctgaa tcaaagattc agaccgatgg cagtccgcac ccgagtttat gcggcaaaca
    17941 gcgaggctac ggcaacccgt cccctctccc tgtgggagag ggttagggag agggcagtaa
    18001 gccgcaggct tacatcaaag ccgataacgc ttccgttaca actccgccca ctgaaagcag
    18061 cctgcaacga agccaaaacg acaaaccgca tcgtaaacca cccaacccat aggagaaccc
    18121 catgcaaaac gaaaccatca acccgaaaca gcaccttgcc gccatcaaag aatactggca
    18181 gcccgaaatc atcaaccgcc acgggttcca attccgcttg gtcaaacttt tgggcgatta
    18241 cggctggcat acgcacggat acagcgacaa agtgctgttt gccgtggagg gcgacatggc
    18301 ggtggacttc gccgacggcg gcagcatgac gatacgcgag ggcgagatgg cggtcgtgcc
    18361 gaagtcggtg tcgcaccgcc cgcgttcgga aaacggctgc tcgttggtgc tgattgagtt
    18421 gtccgactcg tccgaggccg tctgaaaacg aagtttccga aggaagctga gtttctgcga
    18481 agctaaaagc agcctgcacc ttcaatcaat atgccgaaaa tacaacccca ccgcacacca
    18541 acacacaaag gaaatcccat gacacgcttc aaatattccc tgctgtttgc cgccctgttg
    18601 cccgtgtacg cgcaggccga tgtttctgtt tcagacgacc ccaaaccgca ggaaagcact
    18661 gaattgccga ccatcaccgt taccgccgac cgcaccgcga gttccaacga cggctacact
    18721 gtttccggca cgcacacccc gctcgggctg cccatgaccc tgcgcgaaat cccgcagagc
    18781 gtcagcgtca tcacatcgca acaaatgcgc gaccaaaaca tcaaaacgct cgaccgcgcc
    18841 ctgttgcagg cgaccggcac cagccgccag atttacggct ccgaccgcgc gggctacaac
    18901 tacctgttcg cgcgcggcag ccgcatcgcc aactaccaaa tcaacggcat ccccgttgcc
    18961 gacgcgctgg ccgatacggg caatgccaac accgccgcct atgagcgcgt agaagtcgtg
    19021 cgcggcgtgg cggggctgct ggacggcacg ggcgagcctt ccgccaccgt caatctggtg
    19081 cgcaaacgcc cgacccgcaa gccattgttt gaagtccgcg ccgaagcggg caaccgcaaa
    19141 catttcgggc tgggcgcgga cgtatcgggc agcctgaaca ccgaaggcac gctgcgcggc
    19201 cgcctggttt ccaccttcgg acgcggcgac tcgtggcggc agcgcgaacg cagccgcgat
    19261 gccgaactct acggcatttt ggaatacgac atcgcaccgc aaacccgcgt ccacgcaggc
    19321 atggactacc agcaggcgaa agaaaccgcc gacgcgccgc tcagctacgc cgtgtacgac
    19381 agccaaggtt atgccaccgc cttcggcccg aaagacaacc ccgccacaaa ttgggcgaac
    19441 agccgccacc gtgcgctcaa cctgtttgcc ggcatcgaac accgcttcaa ccaagactgg
    19501 aaactcaaag ccgaatacga ctacacccgc agccgcttcc gccagcccta cggcgtagca
    19561 ggcgtgcttt ccatcgacca caacaccgcc gccaccgacc tgattcccgg ttattggcac
    19621 gccgacccgc gcacccacag cgccagcgtg tcattgatcg gcaaataccg cctgttcggc
    19681 cgcgaacacg atttaatcgc gggtatcaac ggttacaaat acgccagcaa caaatacggc
    19741 gaacgcagca tcatccccaa cgccattccc aacgcctacg aattttcccg cacgggcgcc
    19801 tatccgcagc ctgcatcgtt tgcccaaacc atcccgcaat acggcaccag gcggcaaatc
    19861 ggcggctatc tcgccacccg tttccgcgcc gccgacaacc tttcgttgat actcggcggc
    19921 agatacagcc gttaccgcac cggcagctac gacagccgca cacaaggcat gacctatgta
    19981 tccgccaacc gtttcacccc ctacacaggc atcgtgttcg acctgaccgg caacctgtcg
    20041 ctttacggct cgtacagcag cctgttcgtc ccgcaatcgc aaaaagacga acacggcagc
    20101 tacctgaaac ccgtaaccgg caacaatctg gaagccggca tcaaaggcga atggcttgaa
    20161 ggccgtctga acgcatccgc cgccgtgtac cgcgcccgta aaaacaacct cgccaccgca
    20221 gcaggacgcg acctgagcgg caacacctac taccgcgccg ccaaccaagc caaaacccac
    20281 ggctgggaaa tcgaagtcgg cggccgcatc actcccgaat ggcagataca ggcaggttac
    20341 agccaaagca aaacccgcga ccaagacggc agccgcctga accccgacag cgtacccgaa
    20401 cgcagcttca aactcttcac tgcctaccac tttgcccccg aagcccccag cggctggacc
    20461 atcggcgcag gcgtgcgctg gcagagcgaa acccacaccg accctgccac gctccgcatc
    20521 cccaaccccg ccgccaaagc ccgcgccgcc gacaacagcc gccaaaaagc ctacgccgtc
    20581 gccgacatca tggcgcgtta ccgcttcaat ccgcgcgccg aactgtcgct gaacgtggac
    20641 aacctgttca acaaacacta ccgcacccag cctgaccgcc acagttacgg cgcactgcgg
    20701 acagtgaacg cggcgtttac ctatcggttt aaataaggtc gtctgaaaac ggagtttctg
    20761 cgaagctata gtggattaac aaaaaccagt acgg
//
LOCUS       DAXIFS010000013        20704 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.013, whole genome shotgun sequence.
ACCESSION   DAXIFS010000013 DAXIFS010000000
VERSION     DAXIFS010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20704
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.013"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(64..240)
                     /locus_tag="ACFOCA_000404"
     CDS             complement(64..240)
                     /locus_tag="ACFOCA_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987173.1"
                     /translation="MKSRRFFKALLLIAALVGAFYAGMQTQAYLYEDLCLDLGGGKNP
                     GSYPICVIEKVPAR"
     gene            complement(243..1601)
                     /gene="murF"
                     /locus_tag="ACFOCA_000405"
     CDS             complement(243..1601)
                     /gene="murF"
                     /locus_tag="ACFOCA_000405"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HFC6987174.1"
                     /translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALA
                     GGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPF
                     VFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
                     IEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDG
                     MALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAV
                     VLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDD
                     TYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAY
                     FVGDNSVEAAEKFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALE
                     DK"
     gene            complement(1726..2973)
                     /locus_tag="ACFOCA_000406"
     CDS             complement(1726..2973)
                     /locus_tag="ACFOCA_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6987175.1"
                     /translation="MEILCIGGGVFADVKNYKRRSKIWLTILLTLILSCAVMDKIASD
                     KDLREPDAGLLLNIFDLYYDLASAPAQYAAKRAHILEAAKKASTWHIRHVAPKYKNYV
                     VVIGESARSDYMNVYGFPLPDTPFLSQTKGLLINGYQSTAHATNLSLPQTLGLPGEPN
                     NNIVSLAKQAGFRTAWLSNQGMLGHFANEISTYALRSDYPWFTQRGDYGKSAGLSDRL
                     LLPAFKRVLIGNAGTKPRLIVMHLMGSHSDFCTRLDKDARRFQYQTEKISCYVSTIAQ
                     TDKFLEDTVKILNENKESWSLVYFSDHGLMHVGKGGERTLTHGAWKRQSYGVPLVKIS
                     SDDTRREMIKVRRSAFNFLRGFGSWTGIETDELPDDGYDFWGNVPDVQGEGNNLAFID
                     GLPDDPAPWYAGKGKSTKNTSKK"
     gene            complement(2931..3374)
                     /locus_tag="ACFOCA_000407"
     CDS             complement(2931..3374)
                     /locus_tag="ACFOCA_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987176.1"
                     /translation="MKQSARIKNMDQTLKNTLGICALLAFCFGAAIASGYHLEYEYGY
                     RYSAVGALASVVFLLLLARGFPRVSSVVLLIYVGTTALYLPVGWLYGAPSYQIVGSIL
                     ESNPAEAREFVGNLPGSLYFVQALFFIFGLTVWRYCVSGGGYLLT"
     gene            complement(3397..4875)
                     /locus_tag="ACFOCA_000408"
     CDS             complement(3397..4875)
                     /locus_tag="ACFOCA_000408"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFC6987177.1"
                     /translation="MFSKLTPLAETNIPSLLCENAAGRLLHSDSRQIKQGDIFIACPG
                     EYADGRSYIPTAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGILAAQVYGN
                     VSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAP
                     VDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEA
                     YGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEHADIRITDF
                     TASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLDVLEKIR
                     PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
                     KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVE
                     QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
     gene            complement(4900..6648)
                     /locus_tag="ACFOCA_000409"
     CDS             complement(4900..6648)
                     /locus_tag="ACFOCA_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFC6987178.1"
                     /translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIA
                     RGLYLQTVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKEM
                     KEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV
                     FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDRQGNIV
                     DSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
                     ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
                     QPYKIGPAQVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFSSKEMYDLYHELGIGVRM
                     HSGFPGESAGALRNWQKWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE
                     KQAVAPQGKRIFKASTARQVRELMVSVTEPGGTGTAGAVDGFDVGAKTGTARKLVNGR
                     YVDYKHVATFIGFAPAKNPRVIVAVTIDEPTANGYYGGVVTGPVFKQVMGGSLNILGV
                     SPTKPLTNVAAVKTPS"
     gene            complement(6709..6972)
                     /gene="ftsL"
                     /locus_tag="ACFOCA_000410"
     CDS             complement(6709..6972)
                     /gene="ftsL"
                     /locus_tag="ACFOCA_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HFC6987179.1"
                     /translation="MNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIALE
                     QDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVEHQR"
     gene            complement(6969..7955)
                     /gene="rsmH"
                     /locus_tag="ACFOCA_000411"
     CDS             complement(6969..7955)
                     /gene="rsmH"
                     /locus_tag="ACFOCA_000411"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFC6987180.1"
                     /translation="MSGAESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
                     SRLGDAGRLIVFDKDPQAIAVAEELARSDKRVGVVHGGFASFQTALDGLGIGKVDGAL
                     FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
                     ERFSRRIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAVRIFINRE
                     LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
                     PELPLKIVGRALKPGEAEIAANPRARSAVLRVAERTAGPIPEQSQRKTSEWQ"
     gene            complement(7952..8407)
                     /gene="mraZ"
                     /locus_tag="ACFOCA_000412"
     CDS             complement(7952..8407)
                     /gene="mraZ"
                     /locus_tag="ACFOCA_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HFC6987181.1"
                     /translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
                     LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLVSAGLRKRV
                     DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPDELAFQLSQTDLQL"
     gene            8686..9897
                     /locus_tag="ACFOCA_000413"
     CDS             8686..9897
                     /locus_tag="ACFOCA_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6987182.1"
                     /translation="MTAPVPTCNMSGNPINLHKLTLIMPLPSPEARQFSLKLQTLIAE
                     KIGKHGNWIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQL
                     QELLSQTAGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQARAP
                     EASQKVVHLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTYSA
                     RPLHDLQLSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLEHGCMIFIDYGFDAAQ
                     YYHPQRNQGTLIGHYRHHIIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLIGYLPQ
                     SHFLLNLGITELLAQTGKTDSAAYICEAAAVQKLIDQHEMGELFKVIAFGKNIGIDWA
                     GFRFGDICHKL"
     gene            10029..10105
                     /locus_tag="ACFOCA_000414"
     tRNA            10029..10105
                     /locus_tag="ACFOCA_000414"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10063..10065,aa:Met,seq:cat)
     gene            10113..10188
                     /locus_tag="ACFOCA_000415"
     tRNA            10113..10188
                     /locus_tag="ACFOCA_000415"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10146..10148,aa:Ala,seq:ggc)
     gene            complement(10470..11291)
                     /locus_tag="ACFOCA_000416"
     CDS             complement(10470..11291)
                     /locus_tag="ACFOCA_000416"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFC6987183.1"
                     /translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIGFHSNHK
                     VFEIAIQLGAVLAVVFEYRQRFSNVLHGLGKDRKANRFVLNLAIAFIPAAVMGLLFGK
                     QIKEYLFNPLSVAVMLVLGGFFILWVEKRQSRAEPKIADVDALRPIDALMIGVAQVFA
                     LVPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
                     LILIGFIAAFVSGLVAVKALLRFVSKKNYIPFAYYRIVFGIAIIILWLSGWISWE"
     gene            complement(11324..11968)
                     /locus_tag="ACFOCA_000417"
     CDS             complement(11324..11968)
                     /locus_tag="ACFOCA_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6987184.1"
                     /translation="MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIE
                     VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGL
                     KYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
                     LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK"
     gene            complement(11971..12834)
                     /gene="ftsN"
                     /locus_tag="ACFOCA_000418"
     CDS             complement(11971..12834)
                     /gene="ftsN"
                     /locus_tag="ACFOCA_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6987185.1"
                     /translation="MNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKIPA
                     SSKQPAETEILKPKNQPKEDIQPEPADQNALSEPDAATEAEQSDAEKAADKQPVADKA
                     DEVEEKAGEPEREEPDGQAVRKKALTEEREQTVREKAQKKDAETVKKQAVKPSKETEK
                     KASKEEKKAAKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTSDKAEATHYLQMG
                     AYADRQSAEGQRAKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKKHE
                     VASLIRSIESK"
     gene            complement(12940..14436)
                     /locus_tag="ACFOCA_000419"
     CDS             complement(12940..14436)
                     /locus_tag="ACFOCA_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFC6987186.1"
                     /translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDMEVKE
                     SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLE
                     EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
                     GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLM
                     MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
                     AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
                     VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
                     SAAELMQQEAGESSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEAL
                     GGLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
     gene            complement(14450..14770)
                     /locus_tag="ACFOCA_000420"
     CDS             complement(14450..14770)
                     /locus_tag="ACFOCA_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003763371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HFC6987187.1"
                     /translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
                     TREEFDIQQQVLIKTRTKLAALEARLEKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
                     EAGE"
     gene            15253..16779
                     /gene="putP"
                     /locus_tag="ACFOCA_000421"
     CDS             15253..16779
                     /gene="putP"
                     /locus_tag="ACFOCA_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFC6987188.1"
                     /translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
                     AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
                     NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
                     AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
                     SVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVSARRIG
                     MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
                     AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
                     SDPNSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWV
                     KKPAQAAGESGLLTMYEIVPGFIVCLIVAVLVSLFNKEPSRETQERFEKADADYRATR
                     "
     gene            complement(16869..17036)
                     /locus_tag="ACFOCA_000422"
     CDS             complement(16869..17036)
                     /locus_tag="ACFOCA_000422"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987189.1"
                     /translation="MKHFLDSPKFFGGQAASVRPEYGNIVINPQMKYKASNAGRVGAS
                     VSLKMKRVKHK"
     gene            17028..20633
                     /gene="putA"
                     /locus_tag="ACFOCA_000423"
     CDS             17028..20633
                     /gene="putA"
                     /locus_tag="ACFOCA_000423"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HFC6987190.1"
                     /translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
                     ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
                     IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDKQMSSALSRLISKGGAPL
                     IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
                     RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRTQHGRVMGELLPRLKELFLL
                     GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
                     IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLS
                     AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
                     APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDTLIRSPFDTIAEQGIHLHNA
                     LPLPRDLYGKCRLNSQGVDLSNENVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
                     PIKNPADHDDIVGTVSFADAALAQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
                     HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPQDAKAVGAIVAISPW
                     NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHEAGIPTSALQLVLGAGD
                     VGAALTNDARIGGVIFTGSTEVARLINKALAKRGDNPVLIAETGGQNAMIVDSTALAE
                     QVCADVLNSAFDSAGQRCSALRILCVQEDVADRMLDMIKGAMDELVVGKPIQLTTDVG
                     PVIDAEAQQNLLNHINKMKGVAKSYHEVKTAADVDSKKSTFVRPILFELNNLNELQRE
                     VFGPVLHVVRYRADELDNVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
                     NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRAGEWVAPTLSQIGQADEAALKRL
                     EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
                     GSTVQAFAALTELAASGIQAVVEPDSPLASYTADLEGLLLVNGKPETAGISHVAALSP
                     LDSARKQELAAHDGALIRILPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
BASE COUNT         4886 a         5966 c         5010 g         4842 t
ORIGIN      
        1 tcgggcctgc gcccgtttga ggttggcttg ccgcccggca aggtttcgga cggcttttgc
       61 agattaacgt gcagggactt tctcaatcac gcaaatcggg taactccccg gatttttgcc
      121 gccacccaag tctaaacata aatcttcata aagatacgcc tgcgtctgca ttccggcata
      181 aaacgcgccg accagcgcgg caatcaacaa taaggcttta aaaaaacgtc gacttttcat
      241 tttcacttat cctccaatgc ctcgaccact tcttccatct gcataaagcg cgaacctttc
      301 accaacacgg tggcgcgttc gggcaaatcg tggcgcaaca cttgaatcaa cgggtctttg
      361 gcggcgaacc acaaaccgtc cgcgccaaat ttttccgccg cttcgacgct gttgtcgccg
      421 acaaaataag ccgcttcgat gccttggtcg cgagcatacg cgccgacttc ggcgtgcatg
      481 gcggcggctt cgtcctcacc cagttcgccc atatcgccca tcacgaaaat acgcggcgca
      541 ggcatacgcg ccaacacgtc aatcgcagct ttcatgctgt cagggttcgc attataagta
      601 tcgtcaatca gggttgcgcc cttgattccg gatttgacgt tcagacggcc tttgatattg
      661 ctgaagcctt tcaaaccttc cgccacatcg ttcaaactca aacccgcagc caaagccagc
      721 gcggcggcag cggcggcgtt gtggacattg tggcggccgg gaacaggcag caccacggcg
      781 gcgcgctcat cgccgcacac caaatcaaat tcgcacgaca acggtttcag cacgatattt
      841 tccgcgtgga catcgccgct atcgacgccg aaagtgcgcg tattcaaatt aagcgttgcc
      901 gttttgaaga cagccatatt ggcatcttct tgaggaatca gtgccatgcc gtctgaacat
      961 aagccttgat aaatctcgct tttcgctttg gcaatatcgc ccactccgtc gaaaccgcag
     1021 ccgacatggg cacgcagggc gttgttaacc aaggcggcat caggtttggc gatttgcgtc
     1081 aaaaccgcca gttcgccaaa atgattcata cccatttcaa tcacggcata gcggtgtttt
     1141 tcgtttaatt tcaacaaagt caacggcaat ccgatgtggt tgttgaagtt gcctgccgtc
     1201 gccaaaacgg cattatcgcc gaaacggcgg cgcaataccg cagccaacat ttccttcacc
     1261 gtcgtcttac cgcccgagcc ggtaataccg aacacaaacg ggttcacatt ctcgcgccac
     1321 gcctttgcca gcgtttgcaa tgcggcaagc gtgtcatcga ctttcaacgc gccatccatt
     1381 gcaacgcaat cttcgcgcga aaccacaacc gccgccgcac cagcagccaa tacgtcttca
     1441 acaaaatcat gcgcatcaaa ccgcccgccc gccaatgcga aaaacacatc gcccgcgcgg
     1501 atgtcgcggc tgtcggttac gatgcgcgac acgggtttgc tttcagacgg catcggaagc
     1561 ttgagggctt ggcagatgaa atttaggtcc agtggtttca tatttacttt cgttaatatt
     1621 cgggcggcgg acacatcggt agcggctgat ttttttatcg cctgttttgc tgtggtaaaa
     1681 cacagattat tttcccattc tcattcggca ttttttctgt acgtatcatt ttttagacgt
     1741 atttttagtc gatttgcctt ttcccgcata ccacggcgcg gggtcgtcgg gcagtccgtc
     1801 gataaaggca aggttattgc cttcgccctg cacatcggga acattccccc aaaaatcata
     1861 gccgtcatcg ggcaactcgt cggtttcgat acccgtccaa ctgccgaatc cgcgtaaaaa
     1921 attaaacgcg ctgcgcctca ctttaatcat ttcgcgccgc gtgtcatcgg acgaaatttt
     1981 aaccagcggc acgccgtagc tttgacgctt ccacgcacca tgtgtcaacg ttcgctcgcc
     2041 gcctttaccg acatgcatca aaccgtggtc ggaaaagtaa accaaagacc agctttcttt
     2101 attttcattc aatatcttaa ctgtatcttc taaaaattta tcggtttgcg cgatggtgga
     2161 aacatagcag gatatttttt cagtttgata ctgaaaccgc cgcgcatcct tatccaaacg
     2221 tgtgcaaaaa tcactgtgcg aacccatcag gtgcatcaca atcagccgag gcttcgtgcc
     2281 tgcatttcct atcaaaaccc gtttgaacgc cggcaacaaa aggcggtcgc tcaaccccgc
     2341 gcttttgcca taatcacccc tttgggtaaa ccacggataa tcgctgcgta gggcataggt
     2401 ggaaatttcg ttggcaaaat gccccaacat tccttgatta gacagccacg ccgtccgaaa
     2461 acccgcctgc ttcgccaagc tgacgatgtt attgttcggt tctcccggca gccccaaagt
     2521 ctgcggcagc gaaagattcg tcgcgtgggc ggtcgattgg taaccgttta tcaacagccc
     2581 tttggtctga ctcaaaaaag gcgtatcggg caatgggaaa ccgtaaacat tcatataatc
     2641 cgaacgcgcg ctctcaccga taaccacaac ataattttta tacttgggcg caacatgacg
     2701 gatatgccat gttgacgctt tttttgctgc ttccaaaatg tgggcgcgct tggcggcata
     2761 ttgtgccggc gcggaagcca aatcgtaata caggtcgaaa atattcaaca acaggccggc
     2821 atcaggttct cgcaaatctt tatcgctggc gattttatcc atcaccgcgc aggacaaaat
     2881 caaagtcaat aatatagtca gccatatttt gctgcggcgt ttatagtttt ttacgtcagc
     2941 aaataccccc cccccgatac acaatatctc caaactgtca agccaaaaat gaaaaataat
     3001 gcctgcacaa aataaagcga cccgggaaga ttgccgacaa attcacgcgc ctcggcagga
     3061 ttgctttcca atatcgaacc gactatctga taagacggcg caccatacag ccagccgacc
     3121 ggcaaatata gggcggttgt gccgacgtaa atcagtaaaa caactgaaga aacgcgcggg
     3181 aaaccgcgtg ccaataataa taaaaataca accgaagcca aagcacccac ggcagaataa
     3241 cggtagccgt attcatattc caagtgataa cctgatgcga tggccgcgcc aaaacaaaag
     3301 gctaaaagcg cgcaaatgcc caatgtattt tttaatgtct gatccatatt ttttattcgg
     3361 gcggattgtt tcatacgatg ccgtccgaat atcccattat ttacgagtta acaaagcctg
     3421 tccgacgatt tcaagatcgg aaaaacggtg cttcacgcct tgtacatcct gatagttttc
     3481 atgccctttg ccggcaatca ggatgatgtc gtttgcggcg gcttgttcaa ccgcataacg
     3541 gatggcggcg gcacggtcgg cttcgacgca ttcgggcgcg ggaacggcag gcaggatgtc
     3601 gttgatgatg tcgtgcggat tttccaagcg cgggttgtcg ctggtgacga cgactttatc
     3661 cgcgccctgt acggctgccg cgcccatcag cgggcgtttg ccgcgatcgc ggttaccgcc
     3721 gcaaccgaat acgcaccaca aagccgcacc ctgcggtttg atttcctgca aggtggcgag
     3781 tgctttttcc aatgcgtcgg gcgtatgggc ataatcgaca acgaccaaag gtttgccgct
     3841 gttcatgatg cagtccatgc gccccgaagc gggacggatt ttttccagca catccaatac
     3901 tttatccagc ggatagccgt tggcgcaaag caaagcgaca caggcggcga gattttgcgc
     3961 gttgaaccgt ccgagcaggc gcgtgtggca tttcccttcg ccccacgggg ttcggaatac
     4021 ggcttctatg ccgtctgaag aggcggtaaa gtcggtaatg cggatgtcgg cgtgttcgct
     4081 gaagccgtag ctataaacgg ccaaatcggg gcagtctttt ttcagacgac ctgcgagttc
     4141 cgcgccgtat tcgtcatcca cgttgatgac tgcgtgtttc aagccgtgcc agtaaaacag
     4201 gcgcgacttg atggcaccgt aggcttccat cgtgccgtgg tagtcgaggt ggtcgcgggt
     4261 gaggttggta aagattgcgc tgcggaatga cacgccgttg acgcgcgact ggtcaagccc
     4321 gtggctggag acttccatcg cggcggctgt tgcaccttgc cggcggaaac ggtagagcag
     4381 ggtttggaca tcgacggggg cgggggtggt gtgcgtggtt tcttccaacg cgccccaaaa
     4441 gccgttgccg accgtgccga taatggcggt tttttcgccc aacaaatcgg cggcctgcgc
     4501 cagccattgc gtaatggagg ttttgccgtt ggtaccggtt acgccccaga ctttgaggcc
     4561 gtctgaaacg ttgccgtaaa cctgtgccgc caatatgccg gcgcggtgtt tcaaatcttt
     4621 gatgccttga ttggggactt tccattcggg attccacgcg aatttgccgt cgtcgtccca
     4681 aaaaacaaaa gccgcgccgt tggcaacggc ggtggggata taactgcggc cgtcggcata
     4741 ttcgcccgga caggcaatga aaatatcgcc ttgtttgatt tgacggctgt ctgaatgcaa
     4801 caaacgccct gctgcgtttt cacacagcag agacggaatg ttggtttcag ctaaaggggt
     4861 taacttgctg aacataaaat aatctcgttg atactcggat taagacggtg ttttgacggc
     4921 tgcaacattg gtcagaggtt tggtcggaga aacgcccaag atgttcaggc taccgcccat
     4981 aacttgtttg aagaccggac ctgtcactac gccgccgtag taaccgtttg cagtcggctc
     5041 gtcaatggtt accgccacaa tcacacgcgg atttttagcc ggggcaaaac cgatgaaagt
     5101 ggcaacgtgt ttgtaatcga cgtaacgacc gttaaccaac ttacgcgccg taccggtttt
     5161 tgcgccgacg tcgaaaccat ctaccgcacc cgccgtaccc gtaccgccag gttcggttac
     5221 agaaaccatc aactcacgca cctgacgtgc ggtcgatgct ttaaatatac gtttgccttg
     5281 cggcgcaacc gcctgttttt caaagctgac cggcagcaaa acgccgtcgt gcgtcagtgc
     5341 ggtataggca cgcgccaatt gcagcaggct caattgcagg ccgtaaccga aagacatggt
     5401 tgcctgttcg ataggccgcc atttctgcca attgcgcaac gcgcccgcac tttctcccgg
     5461 aaaaccggaa tgcatacgca caccgatgcc caactcatga tacaaatcat acatttcttt
     5521 cgaactgaat cgtgcagaca gtttgcttgt accgacattg gaagatttct gcatgatacc
     5581 gcgcacatcc aaagaaggat aaacatgggt atcgcgcacc tgagccggac caattttata
     5641 aggctgcgta ttcagccgtt cgttcaaatc ggttttgccc gcatccaatg ccttcgcaat
     5701 cacaaacggt ttgattgccg aaccgggttc gatcatatcg gttacggcac ggttgcgccg
     5761 ctgttcgctg tctgcccggc cgggcctgtt gggatcgtag gcgggcgtat tggccaaggc
     5821 gaggatttcc cccgtgcggg catccaaaac caccaccgtt ccggcttttg cctgatggta
     5881 ttcgaccgcc ttgttcaact cttcataggc caaggtctga atcctctgat cgagggaaag
     5941 gatgatgtct ttgccgtttt tcggggcttt attgcgcggg gagtccaagc tgtccacaat
     6001 attgccctgc cggtcccgca aaacgacttc cgcgccgtct tcgccatgca ggctgtcttc
     6061 aagcgaaagt tccaaacctt cctgaccttt gccgtcaata tcggtaaatc cgatgacgtg
     6121 tgcaaacagg ttgcccatcg ggtaatggcg ttttaattct ttttcaaata caaagttttc
     6181 caaacccaag gctttgacct cttcggcaac cttgggatcg agctgccgct taatccagat
     6241 aaacgacttg cctttctgtt cgagcttgtt cctcaaaaca tcaaccggca catcgacaag
     6301 ctcggacagg cgttccaatt gtgcggcaga cggcatttcc ttcatctctt taggcacggc
     6361 aaacagggac tccgtcggcg cactcaacgc caaaaccgca ccgttccggt ccgaaaccgt
     6421 accgcgtgta gccggcaatg tttgagtccg cacaatccgg ttgtcgccct gttctttcaa
     6481 aaagttatac gttaccgtct gcagatacag tccgcgagca atcagaccgg caaacaagac
     6541 cgctattgcc atcaggacga agctgatccg tccgttactg gtcatcggct ttttgacctg
     6601 ctcttctttg ggcagcatcc gaggcttata ttcgctctta atcaacattt ttacttctcg
     6661 ttattattat cctgacgcag gaatccgatt ccggcacaca ggctgcttct atctttgatg
     6721 ctccaccata aaggtattgc ccgaaaccgg cggatggagg ttttgttttt ctgccgccgc
     6781 cctgatcgct tcgtggttcg ccaaacgcgc ctgttgcagc ctcatttgcg cataatcctg
     6841 ctccaaggcg atttcctgtt ttttcgcctt atccaaagct gtgaaattga gcctgtactg
     6901 gttttgctgc atcacaacgg aaaaagcgga aacgcacacc gcaagcagca gaaggaaatt
     6961 caatttgttc attgccattc agacgttttt ctctgtgatt gttccggtat cggaccggca
     7021 gtccgctccg ccacacgcaa aaccgcactt ctcgccctcg gattggcggc aatttccgcc
     7081 tcacccggct ttaatgccct gcccacgatt ttcaggggca gctcgggcaa atccgcttcc
     7141 ctgaccgccg cccagcgcgg caggggcgcg tgttgcgaat attttttgac aaactgcttc
     7201 acaatgcgat cttccaacga atggaaagca atgaccgcca aacgtccgcc ctctttcaga
     7261 cgacacatga cctgcggcaa tactgcccct acttcttcaa gctcgcggtt aataaagatg
     7321 cggaccgcct ggaaggtgcg cgtcgcagga tcctgccccc gctcgcgagt acggacgttt
     7381 tgtgccacga tctgcgccag cttgcgggtt gtatcgattg gactttccgc ccgttgcgca
     7441 acaatggcgc gcgcaatccg gcggctaaac cgctcttcac cataattctt gattacctcg
     7501 tgcaaatcct gttccgacgc aaccgctatc cactctgcgg cagacatacc gcgcgtcgta
     7561 tccatacgca tatccaaagg ggcatcgaaa cggaagctga aaccgcggct gccgtcatcg
     7621 atttgcgggg acgaaatccc caaatcaaac agcgcaccgt ccaccttgcc gatacccaaa
     7681 ccgtccaatg ccgtctgaaa cgaagcaaaa ccgccatgca cgacaccgac ccgtttgtcc
     7741 gaacgcgcca gctcttctgc cacagcaatc gcctgcgggt ctttgtcgaa aacaatcaac
     7801 cgccccgcat cgcccaaacg cgacaaaatc agccgggaat gccctcccct gccgaacgta
     7861 ccgtccacat agacaccgtc ttcgcgcacg gcaagcgcat ccaccgcctc attcagcaag
     7921 accgtgatat gccggtaact ttctgctcca ctcacaattg caaatccgtc tgactcaact
     7981 ggaaggcaag ttcgtcagga tcgtcatcca aagcctgaac catctcagcc tcccactgct
     8041 cgcgacccca aagctccaaa cggttggcac gaccgaccaa aacgacttca cggtcgaaat
     8101 ccaccctctt cctcagtccg gcagaaacca gcacccggcc ggcgctgtcc cattccaaaa
     8161 tttccgcgtt atgcagcaaa agattttgaa accgccgcaa aacagggtta tccgccactt
     8221 ttaagtttaa aagttgcgcc gcaacctttt cccactccgc aacagggtac atcaacagct
     8281 tgtgtttcga ctcgagcgtt accactacgg caggcgtata gaggcgcgac agaatgtcac
     8341 ggaatttggc aggaacagcc aaccgcccct tactgtcgat gcttaattcg tgtgcgccgc
     8401 cgaacatgac atgtcccaag ccgaaatcaa aatcacaagg gtaaaagaga cactttgccc
     8461 cacaattccc caccaatcga cactataaga aattttaaac actcggtcaa atcagggcat
     8521 gaaaactcat taacatatct gaaattttta ttccttttaa aaacaataag ataaaaaatg
     8581 acgacaacgg cacggcgggt gcggtacaga ataatcgaac caataaacaa ctatatatga
     8641 ttaatttaat aatataaaca caatatatag tattaagata aagccatgac agcacccgta
     8701 ccaacgtgta atatgtcggg aaatccaata aatttacaca agctaacact tatcatgccc
     8761 ctcccctctc ccgaagcacg gcaattctcg ctcaaactgc aaaccctcat tgccgaaaaa
     8821 atcggcaaac acggcaactg gattccattt tcacgtttta tggaattggt tttatacgct
     8881 ccgcaatacg gctactacac cggcggcagc cataaaatcg gcaataccgg ggattttatt
     8941 accgcaccga ccctcacctc tctgtttgca cagacactgg cacgccaact tcaagaactt
     9001 ctatcccaaa cggcgggcaa tatctatgaa ttcggcgcgg gaaccggaca gcttgccgcc
     9061 gatttgttgg gcagcatttc ggacggcatc agccgttact atattattga aatatcgccg
     9121 gagctggcag cacgtcagaa aaacctgatt caagcacgcg caccggaagc atctcaaaaa
     9181 gttgtccact tgaccgcact tcccgaagcg tttgacggca tcatcatcgg caacgaagta
     9241 ctcgatgcca tgcctgtcga aatcgtccgt aaaaatgaag gcggctcatt cgagcatgtc
     9301 ggcgtttgcc tagataatga ccgttttacc tattcggcac gaccgctgca cgacttgcag
     9361 ctatctgcct tggcttccct ctattttcct caaacagatt atccctatac cagcgaacta
     9421 catccgcaac aatatgcctt tatccgcacc cttgcctcaa gactcgaaca cggctgcatg
     9481 atattcatcg actacggttt tgatgcagcg cagtattacc accctcaacg caatcaaggt
     9541 actctgatcg gacactaccg acatcacatt atccacaatc cttttgactt catcggattg
     9601 gccgacctga ccgcacatgt caactttacc gacattgcac aagcagggac ggatgccgga
     9661 ttagatttga taggttacct tccccaatcc catttcttat tgaacttggg cattaccgag
     9721 ctattggcac agacggggaa aacggattcg gcagcctaca tctgtgaagc tgctgccgtt
     9781 cagaaactga ttgaccagca tgaaatgggc gaactgttta aagtcatcgc attcggaaaa
     9841 aatatcggca tcgactgggc aggattccgc ttcggcgaca tctgccacaa actctaaccc
     9901 tcatgccgcc tgaatccgct tcagacggca taaacttttt aacatttaaa aacagtcaac
     9961 taattcaaaa ttaaaaaata cggcttgtca aaaaaacaga aaaacatata atagcgtctt
    10021 cacgaaacgg cgaattagct cagtcggtta gagcagagga atcataatcc ttgtgtccgg
    10081 ggttcgagtc cctgattcgc caccaaattt tcgggggtat agctcagttg gtagagcgct
    10141 tgcatggcat gcaagaggtc agcggttcga tcccgcttac ctccaccaga taaaaaagca
    10201 cagaccgtaa aaaggtatgt gcttttttat tgcctgattg ccagcaaata aagaataaac
    10261 cactgccttc aaaacaggca atcgacttta aacctatcgc cccgcctgtc ctgattttat
    10321 agtgaattaa atttaaaccg gtacagcgtt ggctcgcctt gccgtactat ctgcggcttc
    10381 gtcgccttgt cctgattttt gttaattcac tatatcagcc cgccagacaa acccgacccg
    10441 aataatgtct tcaggtcggg tttatggttt cattcccaac ttatccagcc tgacagccac
    10501 aatataatga tggcaatacc aaaaacaatg cggtaatagg caaaaggaat ataatttttc
    10561 ttggaaacaa acctcagcaa cgcttttacc gctaccaagc ctgaaacaaa ggcagcaata
    10621 aagcctatca gaatcaaacc gacatcatgc agggtgaaaa atcggtaatg tttcaggaca
    10681 tcataagccg ttgcggcaac catcatcggc acagccaaga aaaacgagaa ttctgtcgca
    10741 gttttccgtt cgatgcccca aagcatcccg cccataatcg tactgcccga acgggacgta
    10801 cccggaacca gtgcaaacac ttgggcaacg ccgatcatca aggcatcaat cggacgcaat
    10861 gcatcaacat cggcaatttt aggctctgct cggctttggc gtttctccac ccacaaaata
    10921 aaaaaaccgc ccaaaaccag catgactgca acactcaagg ggttaaacag atactctttg
    10981 atttgtttgc cgaacaacag ccccatcacg gcggcaggta taaaagcaat ggcaagatta
    11041 aggacgaagc ggttggcttt ccggtctttc cccaagccgt gcaacacatt gctgaaacgt
    11101 tgccggtatt caaacactac cgccaaaact gcaccgagct ggatggcaat ttcaaaaacc
    11161 ttgtgattgc tgtgaaaacc aatcagattg ccgaacacaa tcaaatgtcc ggtgctggaa
    11221 atcggtaaaa attcggtaaa accttctacc aagcccatca tcagggcttt caggacaatc
    11281 agaaaatcca ttgcttgcgc ttctttcgga tacgggagtt cggctatttc tgtacagcag
    11341 gggtctgacg cttgcgttct tccctgactt tggcaaccaa ttctttaatc gtatgaacgc
    11401 cgccgtcaaa gccgttattg aagataacgc ggtattttcc gccgacaata acggtcggcg
    11461 tgctgtcgat gcggtattgt tccgtcagtt tctgcatttt taatgcggcg gcggcagctt
    11521 cgggggaatc ataggcgcgc atcagttttt tgccgtcaaa gcctttttga gacaaagccc
    11581 attttccggc aaccgacctg ttttccaagc ggattttttg ttcgtaaact gctttaaaca
    11641 cagcagggtt tgcctgatat ttcaaacccg acaaattgac ggcagccgcc atcctagcca
    11701 aaccgagcat ttcaggctgc cagaccacgt gctccgtcct caaataggca tcagacggca
    11761 atgccttgcc cagtttcaat aacaaaggat cgaaatgatg gcaatgtacg cagaaatagc
    11821 cgaaaaattc caaaacctca attttacccg actgttcttg aggaatgggt ttatccaaca
    11881 caagatagtc ttccccttcc gtcagggcat atgcctgcgc ggacaacact gccgacagca
    11941 gcagcggcaa cagatgtttg agcttcataa ttatttgctt tcgatagaac ggatcaggct
    12001 ggcgacttca tgttttttca actcgtcctg catttttttc accgcatcgg cagacatatt
    12061 gccgctttgc acccggtaaa gcgttttatg tcccgcctga taaccgacca ccttggaaga
    12121 tatgcccaag attgccagtt tggcacgctg cccttccgcg ctctgacggt cggcatacgc
    12181 gcccatttgc agataatgcg ttgcttccgc cttgtcggac gttttcattt tctgcacttc
    12241 tttggcggcg gcactgcgcg ctttttcgat gctgccgctg ttgaggattt gttccggggt
    12301 tggtttgggt gcaacttttt ccttcgccgc ctttttctct tcttttgaag cttttttctc
    12361 tgtttcttta gacggtttta ccgcttgttt tttaaccgtt tcggcatctt tcttctgcgc
    12421 tttttccctg acggtttgtt cacgctcttc cgtcagcgct ttcttacgca ctgcctgtcc
    12481 gtccggctct tcccgttccg gctcgcccgc cttttcttca acctcgtcgg ctttatcggc
    12541 aacgggctgc ttgtcggcag ctttttccgc atccgactgc tctgcctctg tcgcagcatc
    12601 cggttcggac aaggcgtttt gatcggccgg ttcaggttgg atgtcttcct taggctggtt
    12661 tttcggtttc aggatttccg tttctgcagg ctgcttcgac gaagccggga ttttgaacgc
    12721 attttgaccg ctctggttca gataaaacaa aataccggca ataatgaccg tcgccagtat
    12781 caaaccgaag aaaaaaccgg acagaccttt tccggattgg gaaaatttgt tcataaacat
    12841 accttaatgt gtttcagacg gcattaacgc cgtttgctta cgggcggata ttctaacaat
    12901 atcgccatat ttgggcaaaa cctgcttcca ttcccattcc tataaagcac gacggaaacc
    12961 tatggctttc atgacgtggc ttctgccgac ttcttcgtcg cccgccaaat ccgccaatgt
    13021 acgcgccacg cgcataatgc ggtggaagct gcgggcggaa agggagagtt tttccagcag
    13081 gccgcccaat gcttcctgcg cttctttttg aatgcgggcg gatgtgtcga gttcactgac
    13141 actcaaggcg gcattcactt tgccttgccg tgcgtattgt ttgtctctag cggcgataac
    13201 gcgttccaaa acggacgcgc tgctttcccc tgcttcctgc tgcatcagtt cggcggcgga
    13261 caggctcggg acttcgatgg tcaaatcgat gcggtcgagc agcggcccgg aaatcttgct
    13321 gcggtaacgc gcgacgcttt cgggcgtgca gcggcagggt ttgacgggat gcccgagata
    13381 accgcacggg caggggttca tggcggcaac aagttggaat ttggcaggat agacggcttg
    13441 gcgcgccgcg cgggaaatgt ggatttcgcc gttttccaac ggttcgcgca aaacttccaa
    13501 aactttgcgg tcaaactcgg gcagctcgtc caaaaacaaa acgccgtggt gcgccaatga
    13561 aatttcgccc ggacgcggat ccgaaccgcc gccgaccata gccgccgcgc tggcgctgtg
    13621 atgcggactg cggaaaggac ggttgctgtc gagttgttgt tggtggttgg gcaggagcga
    13681 acgcaatgcc caaacttcta ccaattcgtc ttcggtcagc ggcggcagga tgccgggcag
    13741 ccgttgggag agcatagact tgcccgttcc cggcggaccc atcatcaaga ggctgtgtcc
    13801 gcctgcggca gcgatttcca aagcaaggcg cgcggtgtgc tgacctttca catcgcacaa
    13861 atcaggttgt ccgccatgtt caaacggcat ctgaggaact tggcattcgg tttgcgccaa
    13921 aggttcgatg ccgttcaaat gggcggcgac ttcgcccaaa gagcgcgcgc cgtaaacggt
    13981 aatgccgcgc atcacggcgg cttgtcctgc attttcttca ggcaaaacaa atgcacgttt
    14041 tgcctgcata ccctgccacg ccatcgccaa cgcgccacgc acggggcgca acagccccga
    14101 cagtgccaat tcccccgcaa actcgtattc ctccagtttt tcgggcgcaa cctgccccga
    14161 tgcggcaagg atgccgattg caatcggcaa atcgaaacgc cccgactctt tgggcaggtc
    14221 ggcgggggcg aggttgacgg taattttttt ggcggggaat tcaaaaccgc tttgaataat
    14281 ggcggcacgg acacggtcgc gactttcctt tacttccata tcgggcagtc cgacgatgtt
    14341 gaaatgtggc aggccgttgg caaggtgggc ttccacttcg accaacggcg cattcatacc
    14401 gctcaaggcg cggctgtaaa ccaaggcaag cgacatattt cagacgacct tattcgccgg
    14461 cttcggtttg ctgcctgatt tcggcgacgg cttcttcggc agcggcttca gccgcttcca
    14521 atgctgcccg ttcgggattt tgcgcggctt cgagtttttc caaacgcgct tccaaagccg
    14581 ccagtttggt acgggttttg attaaaacct gctgctggat gtcgaattct tcgcgcgtaa
    14641 ccagatccat acggttgaac gcgccgccca gcatcgcctt aatatttttt tccacatctt
    14701 tggcagggct gttggcgatg gtttcgctga ttttcgagcc gacttcctca aaaagctgct
    14761 tgccgaacat aatctgtatc cttcctgaac atatcaaatt caatcggcta ttgtataagg
    14821 aaaaatgccg tctgaaaacg ggcggcggat aatcggcaaa acataccgcg cctcctttgc
    14881 ggttgctaaa ttacacctca aaacacctgc cgcctgaaaa cggatttcat attccgcgca
    14941 acgcccgatt acaagacact acaaaacaat atgctgtttt aaatgatttt tccgacgcgc
    15001 atcgtttcaa actcggcttt ttaagccatt aagtgctttg caaacaacag aaattgggtt
    15061 atcctgaaac ggattattta caatttcata tagttttatt acatatctta ttgtgattga
    15121 agataattta tccgaatccc cctttcgggt atccggattt tccgttgtac ttttattaga
    15181 aaaacatttc aggcgcaagt tgcttgcaat ttcaaagcct gtaattctga agttttagac
    15241 gaggaatagc acatgaatcc catgtacatt acttttgcaa tctatctggt tgcagtcctt
    15301 ctcatcgggc ttgccgccta tttttctacg cgcaatttcg acgattatat tttgggcggg
    15361 cgcagcctag gcccgtttgt taccgcgatg tcggcaggcg cgtccgatat gtccggctgg
    15421 cttttgatgg gtctgccggg cgcgatttat ttgagcggtt tgaatgaggc ttggattgcc
    15481 atcggcctct tggtcggcgc gtatttcaac tggcttttgg tggcgggccg tctgcgcgta
    15541 cataccgaat acgccaacaa cgcgctgacg ctgccggatt atttcttcca ccgctttggc
    15601 gcgggcggac acttgatgaa agtggtttcc gcactgatta tcctgttttt cttcacgatt
    15661 tattgcgcct cgggcattgt ggcgggcgca accctgttcc aaagcctgtt tgaaggtatg
    15721 acttacaatc aggcaatgtg gctgggcgcg ggcgcgacca tcgcctatac cttcttgggc
    15781 ggctttttgg cggtaagctg gacggatacg ctgcaggctt ctttgatgat tttcgcgctg
    15841 attttaacgc ctgtgatggt ctatctgggc ttgggcggcg cggaacagat gtctgccgcg
    15901 attcaaagtg tcgccgcagg cacgggcaaa gaatacggca gcctgtttgc cggtacgacc
    15961 gtcatcggca tcatttccac cgccgcatgg ggcttgggct atttcggaca gccgcacatt
    16021 ttggcgcgct ttatggcggc cgaaagcgcg aaatcgctgg tatccgcacg ccgcatcggt
    16081 atgacttgga tggcgttgtg ccttgcgggc gcggtagcgg tcggttattt cggcattgcg
    16141 tatttcggtg caaatcccga caaagtttct tctatgagcg gcaaccacga acgcatcttc
    16201 atcgcgcttt ccaccctgct gttcaaccct tggattgccg gcattatttt gagcgcgatt
    16261 ttggcggcgg tgatgtccac cctgtcctgc cagcttttgg tttgctccag cgcgattacc
    16321 gaagacttct acaaaggctt tttgcgtaaa aacgcgcaac agtcggaatt ggtatgggtc
    16381 ggccgcctga tggtcttggc gattgccgtg atttccatcc tgattgcttc cgatccgaac
    16441 agcaaagtat tgggactggt gtcttacgcg tgggcaggtt tcggcgcggc attcggcccg
    16501 attgtgattc tgtccgtatt gtggaaacgc atcactgcct acggcgcgtt gtcgggtatg
    16561 gttgcaggtg cgttaaccgt agtcgtatgg gcggaatggg tgaaaaaacc ggctcaagcg
    16621 gcaggagaaa gcggcttgtt gacgatgtac gaaatcgtgc cgggctttat tgtttgcttg
    16681 atcgttgccg tgttggtttc cctgttcaac aaagaacctt cgcgcgaaac ccaagaacgc
    16741 tttgaaaaag ccgacgcaga ttaccgcgcc acccgataaa cccctttcag acggcacggc
    16801 atcccggttc gtgccgtctg aacccgtttc cgggtcaaac acaaataaac cttgcctgca
    16861 tacaggcctt atttgtgttt tacccgtttc attttcaaag aaacggaagc acctaccctg
    16921 cccgcatttg aagccttgta tttcatctgc ggatttatta cgatattacc gtattcaggc
    16981 cgcaccgatg ccgcctgccc cccgaaaaac tttggagaat ccaaaaaatg tttcattttg
    17041 catttccggc acaaactgcc ctgcgccaag cgataaccga tgcctaccgc cgtaatgaaa
    17101 tcgaagccgt acaggatatg ttgcaacgtg cacagatgag cgacgaagag cgcaacgccg
    17161 cctccgagct tgcccgccgt ttggttaccc aagtccgcgc cggccgcacc aaagccggcg
    17221 gcgtggatgc gctgatgcac gagttttcac tctccagcga agaaggcatc gcgctgatgt
    17281 gtctggcaga agccctgctg cgtatccccg acaacgccac gcgcgaccgc ctgattgccg
    17341 acaagatttc agacggcaac tggaaaagcc atttgaacaa cagcccttcc ctcttcgtca
    17401 atgctgccgc ctggggcctg ctgattaccg gcaaactgac cgccacaaac gacaaacaaa
    17461 tgagttccgc actcagccgc ctgatcagca aaggcggcgc accgctcatc cgccaaggcg
    17521 taaattacgc catgcggctt ctgggcaaac agttcgtaac cggacagacc attgaagaag
    17581 ccctgcaaaa cggcaaagaa cgcgaaaaaa tgggctaccg cttctccttc gatatgttgg
    17641 gcgaagccgc ctacacccaa gccgatgccg accgctacta ccgcgactat gtcgaagcca
    17701 tccacgccat cggcaaagat gcggcaggac aaggcgttta cgaaggtaac ggtatttccg
    17761 tcaaactttc cgccatccat ccgcgctact cgcgcaccca acacggccgc gtgatgggcg
    17821 aactgttgcc gcgcctgaaa gagctgttcc ttttgggtaa aaaatacgat atcggtatca
    17881 acatcgatgc cgaagaagcc aaccgtctgg agctgtcttt ggatttgatg gaggctttgg
    17941 tttcagaccc tgacttggct ggctacaaag gtatcggttt cgttgtccaa gcctaccaaa
    18001 aacgttgtcc gttcgttatc gactacctga tcgaccttgc ccgccgcaac aaccaaaaac
    18061 taatgatccg cctcgtcaaa ggcgcgtatt gggacagcga aatcaaatgg gcgcaagtgg
    18121 acggcttgaa cggctatccg acctacaccc gcaaagtcca caccgacatc tcctacctcg
    18181 cctgcgcgcg caaactgctt tccgcgcaag acgcggtatt cccgcaattt gccacccaca
    18241 acgcctacac tttgggcgca atctaccaaa tgggtaaagg caaagatttt gaacaccaat
    18301 gcctgcacgg tatgggcgaa accctgtacg accaagtcgt cggcccgcaa aacttaggcc
    18361 gccgcgtgcg cgtgtacgcc ccagtcggca cacacgaaac cctgctcgcc tacttggtgc
    18421 gccgcctgtt ggaaaacggc gcgaactcgt ctttcgtcaa ccaaatcgtc gatgaaaaca
    18481 tcagcatcga cacgctcatc cgcagcccgt tcgacaccat cgccgaacaa ggcatccacc
    18541 tgcacaacgc cctgccgctg ccgcgcgatt tgtacggcaa atgccgtctg aactcgcaag
    18601 gcgtggactt gagcaacgaa aacgtattgc agcagcttca agaacagatg aacaaagccg
    18661 ccgcgcaaga cttccacgcc gcatccatcg tcaacggcaa agcccgcgat gtcggcgaag
    18721 cgcaaccgat taaaaaccct gccgaccacg acgacatcgt cggcacagtc agctttgccg
    18781 atgccgcgct tgcccaagaa gcggttggcg cagccgttgc cgcgttcccc gaatggagtg
    18841 cgacacctgc cgccgaacgc gccgcctgcc tgcgccgttt tgccgatttg ctggagcagc
    18901 acaccccagc actgatgatg cttgccgtgc gcgaagcagg caaaacgctg aacaacgcca
    18961 ttgccgaagt gcgcgaagcc gtcgatttct gccgctacta cgcaaacgaa gccgaacata
    19021 ccctgcctca agacgcaaaa gccgtcggcg cgattgtcgc catcagcccg tggaacttcc
    19081 cgctcgccat ctttaccggc gaagtcgttt ccgcattggc ggcaggcaac accgtcatcg
    19141 ccaaacccgc cgaacaaacc agcctgattg ccggttatgc cgtttccctc atgcacgaag
    19201 ccggcatccc gacttccgcc ctgcaactcg tcctcggcgc aggcgacgtg ggtgcggcat
    19261 tgaccaacga tgcccgcatc ggcggcgtga ttttcaccgg ctcgaccgaa gtggcgcgcc
    19321 tgatcaacaa agcccttgcc aaacgcggcg acaatcccgt cctgattgcc gaaaccggcg
    19381 gacaaaacgc catgattgtc gattccaccg cacttgccga gcaagtctgc gccgacgtat
    19441 tgaactccgc cttcgacagc gcgggacaac gctgctccgc cctgcgcatt ttgtgcgtcc
    19501 aagaagacgt tgccgaccgt atgctcgaca tgatcaaagg cgctatggac gaactcgtcg
    19561 tcggcaaacc gattcagctc actaccgatg tcggccccgt catcgatgcc gaagcacagc
    19621 aaaacctgtt gaaccacatc aacaaaatga aaggtgttgc caagtcctac cacgaagtca
    19681 aaaccgccgc cgatgtcgat tccaaaaaat ccacgttcgt tcgccccatc ctgtttgaat
    19741 tgaacaacct caacgaactg caacgcgaag tcttcggtcc cgtcctgcac gtcgtccgct
    19801 accgcgccga cgaactcgac aacgtcatcg accaaatcaa cagcaaaggc tacgccctga
    19861 cccacggcgt acacagccgc atcgaaggca cggtacgcca catccgcagc cgcatcgaag
    19921 ccggcaacgt ttacgtcaac cgcaacatcg tcggcgcagt cgtcggcgta cagcccttcg
    19981 gcggacacgg tctgtccggc acaggcccca aagcaggcgg ttcgttctac ctgcaaaaac
    20041 tgacccgcgc cggcgaatgg gttgccccga ccctgagcca aatcggacag gcggacgaag
    20101 ccgcactcaa acgcctcgaa gcactggttc acaaactacc gttcaacgcc gaagagaaaa
    20161 aagccgcagc ggccgctttg ggacacgccc gcatccgcac cctgcgccgt gccgaaaccg
    20221 tccttaccgg accgaccggc gagcgcaaca gcatctcatg gcacgcgccc aaacgcgttt
    20281 ggatacacgg cggcagcacg gttcaagcct ttgccgcact gaccgaactt gccgcctccg
    20341 gcatacaggc agtggtcgaa cccgacagcc ccttggcttc ctacactgcc gacttggaag
    20401 gtctgctgct ggtcaacggc aaacccgaaa ccgccggcat cagccacgtt gccgccctgt
    20461 cgcctttgga cagcgcgcgc aaacaggaac ttgccgccca cgacggcgca ctcatccgca
    20521 tcctcccttc ggaaaacgga ctcgacatcc tgcaagtgtt tgaagaaatc tcttgcagcg
    20581 tcaacaccac agccgccggc ggcaacgcca gcctgatggc ggtcgccgac tgattttgcc
    20641 gaaatacccg ggcgcggccc gtgaaccaat gccgtctgaa aacctttcag acggcatttt
    20701 tata
//
LOCUS       DAXIFS010000014        20677 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.014, whole genome shotgun sequence.
ACCESSION   DAXIFS010000014 DAXIFS010000000
VERSION     DAXIFS010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20677
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.014"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            151..2412
                     /gene="nuoG"
                     /locus_tag="ACFOCA_000424"
     CDS             151..2412
                     /gene="nuoG"
                     /locus_tag="ACFOCA_000424"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HFC6987191.1"
                     /translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
                     CRMCLVNVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
                     QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEI
                     AGLQEIAMVNRGEHSEIMPFIGKTVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
                     RKSVSAHDALGSNLIIQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
                     PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGNQNQVGIWANPMNTVEELYLAKKLAN
                     GLGVKNFATRLRQQDKRLSDDLKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
                     LRRAAKDRMALSVLAGSKEELFMPLLSQEAAHPDEWAGRLKKLSGNAEHAVTASLKNA
                     EKAAVILGAEVQNHPDYAAIYAAAQELADATGAVLGILPQAANSVGADVLGVNSGESV
                     AEMANAPKQAVLLLNVEPEIDTADGAKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
                     IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPLWKVLRVLGNLFDLQGFEYHDTAAI
                     LKDALDAESLPSKLDNRVSSTQKDFQTASSRLVRVGGVGIYHTDAIVRRSAPLQATVH
                     AAVPAARVNPNTLARLSLQDGQIAVAKQNGASVSVAVKADAGLPENVVHLPLHTENAA
                     LGALMDTIELAGA"
     gene            2415..3491
                     /gene="nuoH"
                     /locus_tag="ACFOCA_000425"
     CDS             2415..3491
                     /gene="nuoH"
                     /locus_tag="ACFOCA_000425"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFC6987192.1"
                     /translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
                     YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPI
                     MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
                     MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
                     IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
                     MFLGGWLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
                     LIPIGFAYIVILGVWMISPLNLWK"
     gene            3572..4051
                     /gene="nuoI"
                     /locus_tag="ACFOCA_000426"
     CDS             3572..4051
                     /gene="nuoI"
                     /locus_tag="ACFOCA_000426"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFC6987193.1"
                     /translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
                     RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
                     GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
     gene            4063..4734
                     /locus_tag="ACFOCA_000427"
     CDS             4063..4734
                     /locus_tag="ACFOCA_000427"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFC6987194.1"
                     /translation="MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAM
                     LWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
                     AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
                     AAIALVHRKTVNPKRMEPADQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKPK
                     EEGKA"
     gene            4731..5036
                     /gene="nuoK"
                     /locus_tag="ACFOCA_000428"
     CDS             4731..5036
                     /gene="nuoK"
                     /locus_tag="ACFOCA_000428"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFC6987195.1"
                     /translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
                     FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDELKG"
     gene            5070..5645
                     /gene="fic"
                     /locus_tag="ACFOCA_000429"
     CDS             5070..5645
                     /gene="fic"
                     /locus_tag="ACFOCA_000429"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6987196.1"
                     /translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
                     IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
                     MNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFL
                     LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
     gene            5769..6110
                     /locus_tag="ACFOCA_000430"
     CDS             5769..6110
                     /locus_tag="ACFOCA_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987197.1"
                     /translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
                     EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
                     RLERVGFVSPK"
     gene            6159..8183
                     /gene="nuoL"
                     /locus_tag="ACFOCA_000431"
     CDS             6159..8183
                     /gene="nuoL"
                     /locus_tag="ACFOCA_000431"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFC6987198.1"
                     /translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
                     AVLSAYVLWGFIDGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
                     HIYTIGYMHDEKIGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
                     YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQTATIQ
                     LFPSVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
                     FMVSRMSPIYEMSSTALSVIMMIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
                     ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTM
                     LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
                     VFHGEEKWRSLPEHHDDHHGEEHHGLGKNDNPHESPLVVTLPLILLAIPSVIIGYVAI
                     EPMLYGDFFKDVIFVNTDAHPTMHIMKEEFHGALAMVSHSLHSPVLYLAIAGVLSAWL
                     LYVKLPHLPAKIAQAFRPIYVLFESKYYLDALYFNVFAKGTRALGTFFWKVGDTAIID
                     NGIVNGSAKLVGVIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
     gene            8272..9768
                     /locus_tag="ACFOCA_000432"
     CDS             8272..9768
                     /locus_tag="ACFOCA_000432"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFC6987199.1"
                     /translation="MFSNYLLSLAIWIPIAAGVLVLSTGKDSRAPLARVLAFMGALAG
                     FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
                     AGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
                     RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFL
                     SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
                     PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKG
                     AIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
                     PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEM
                     KDINCREFAILAILAVVVLGMGLYPNAFIEVVHQAANDLIAHVAQSKI"
     gene            9778..11223
                     /gene="nuoN"
                     /locus_tag="ACFOCA_000433"
     CDS             9778..11223
                     /gene="nuoN"
                     /locus_tag="ACFOCA_000433"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HFC6987200.1"
                     /translation="MNWSDLNLMPAMPEIVLLALLVLLLLADLWVSDDKRRWTHYGAL
                     ATVAVTAVVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALTFALFVYAKPYNQVRG
                     IFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
                     KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
                     FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKVAAVVFAFRILVTGLGTVHHDWSLMF
                     ALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
                     LMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
                     KFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRAHPTVGGNNAAKF
                     LLSVNALLLVLWGIMPQTVIDWCAKALENTL"
     gene            11335..11634
                     /locus_tag="ACFOCA_000434"
     CDS             11335..11634
                     /locus_tag="ACFOCA_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HFC6987201.1"
                     /translation="MTASMYILLLLALIFANAPFLTTRLFGIVPLKRKHFGHHLIELA
                     AGFALTAVLAYILESRAGAVHDQGWEFYATVVCLYLIFAFPCFVWRYFWHTRNRE"
     gene            complement(11743..12639)
                     /locus_tag="ACFOCA_000435"
     CDS             complement(11743..12639)
                     /locus_tag="ACFOCA_000435"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFC6987202.1"
                     /translation="MNPTNDLKAWQQRAQAQTELLLERFLPSENEIPHTLHEAMRYAA
                     LDGGKRLRPMLVLAASELGEAVHEAVEQAMAAIEMIHVYSLVHDDMPAMDNDSLRRGK
                     PTCHIKYGEANALLTGDALQTQAFDVLSRPTELPAARQLAMLSVLAKAGGSRGMAGGQ
                     AIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGATACPDLSDAELSVLDAYAAKLG
                     LAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLEAARSYAHKLVAEAVALL
                     EPFGDKALRLRQLAEFAVARKY"
     gene            complement(12623..12931)
                     /locus_tag="ACFOCA_000436"
     CDS             complement(12623..12931)
                     /locus_tag="ACFOCA_000436"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFC6987203.1"
                     /translation="MPSEILLFQTASGFQKCYNSVFTETPDTMKKITPKSFEEALSRL
                     ESLTQSMQGEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGPKELNLESDE
                     "
     gene            complement(12958..13881)
                     /gene="rsgA"
                     /locus_tag="ACFOCA_000437"
     CDS             complement(12958..13881)
                     /gene="rsgA"
                     /locus_tag="ACFOCA_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HFC6987204.1"
                     /translation="MPSEHPFSDGISTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
                     EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
                     IVTAAVPSPSMRLLQRALLAAEAAGIEAVIVLNKADLPETALWREKLKFYETLGYPVI
                     ETRALENADLLRPVLQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
                     TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
                     PGCAFKAAAETGAASPERLAFLQGITDELPG"
     gene            complement(13886..15742)
                     /locus_tag="ACFOCA_000438"
     CDS             complement(13886..15742)
                     /locus_tag="ACFOCA_000438"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6987205.1"
                     /translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMAGVRKWIA
                     ALAALTAGIGIMEALIFQFMGKIVEWLGKYAPAELFAEKGWELAAMAAMMVFSVVWAF
                     AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
                     TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
                     ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
                     IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
                     VGDGMATLSKPHTILDKPRALPLNVPQGAIKFEHIDFCYEAGKPLLNGFNLTIRPGEK
                     VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGVTQESLRAQIGLVTQDTSLL
                     HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPELSDAKGRRGYDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMNGKTVIAIAHRLST
                     IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
     gene            complement(15768..15905)
                     /locus_tag="ACFOCA_000439"
     CDS             complement(15768..15905)
                     /locus_tag="ACFOCA_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987206.1"
                     /translation="MPSEGGATFALTKPCVSASRCLPDGFSRKMALLSFLSDGIMFDA
                     V"
     gene            complement(15905..16489)
                     /gene="ruvA"
                     /locus_tag="ACFOCA_000440"
     CDS             complement(15905..16489)
                     /gene="ruvA"
                     /locus_tag="ACFOCA_000440"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFC6987207.1"
                     /translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
                     VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAV
                     AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHAVTDGLFAAAPAADETEDIVGTLLA
                     LGYSEREAKAAVKGVPKGTDVGEGVRLALKNLLK"
     gene            complement(16571..16897)
                     /locus_tag="ACFOCA_000441"
     CDS             complement(16571..16897)
                     /locus_tag="ACFOCA_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6987208.1"
                     /translation="MNFKRLLLTAAATALMGISAPALAHHDGHGDDDHGHAAHQHSKQ
                     DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
                     SSRRDD"
     gene            complement(16951..17670)
                     /locus_tag="ACFOCA_000442"
     CDS             complement(16951..17670)
                     /locus_tag="ACFOCA_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFC6987209.1"
                     /translation="MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKV
                     AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
                     TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPV
                     AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQ
                     ERAAEAEAQARGMVQTVLTAG"
     gene            complement(17667..17789)
                     /locus_tag="ACFOCA_000443"
     CDS             complement(17667..17789)
                     /locus_tag="ACFOCA_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6987210.1"
                     /translation="MPSENLSGHIPNRRPHCTAVRNVSGGHDAHSSSTQERNTF"
     gene            complement(17800..18264)
                     /gene="trmL"
                     /locus_tag="ACFOCA_000444"
     CDS             complement(17800..18264)
                     /gene="trmL"
                     /locus_tag="ACFOCA_000444"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HFC6987211.1"
                     /translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
                     KRAGLDYHEFASLTVYENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPE
                     TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
     gene            complement(18329..19054)
                     /locus_tag="ACFOCA_000445"
     CDS             complement(18329..19054)
                     /locus_tag="ACFOCA_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6987212.1"
                     /translation="MDFLSRWRRIADAPTIRRCVLCHGSSGVSDGICAGCRDDLAAYR
                     TDAANSCPLCFRHIQGGAVCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSM
                     VQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWQIL
                     PRHTVFRHHRPPQSTLKGSERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELA
                     KTLKKSGANRICCWTLARTPMKK"
     gene            19053..19796
                     /gene="bioH"
                     /locus_tag="ACFOCA_000446"
     CDS             19053..19796
                     /gene="bioH"
                     /locus_tag="ACFOCA_000446"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HFC6987213.1"
                     /translation="MPDAVKKVYLIHGWGANRHMFDDLMPRLPATWPVSAVDLPGHGD
                     APFAQPFDIEAAADAVAAQIDTPADILGWSLGGLVALYLAARHPDKVRSLCLTASFAR
                     LTAAEDYPEGLAAPALGKMVGAFRSDYAKHIKQFLQLQLLHTPDADGIIGRILPDLAR
                     CGTPSALQEALDAAERADARHLLDKIDVPVLLVFGGKDAITPPRMGEYLHRHLKGSRL
                     VVMEKAAHAPFLSHAEAFAALYRDFVEGV"
     gene            19798..20586
                     /locus_tag="ACFOCA_000447"
     CDS             19798..20586
                     /locus_tag="ACFOCA_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6987214.1"
                     /translation="MNPQDKCWQVHRHLAEYADQRLTLVRNAPKYILLAGADADISRS
                     LLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFTGKGVVQHCQSPIAPLPEACAD
                     MLWSNLGLLAAEQILPVLHNWACALKTDGLLFFTCFGRDTFTELKCRLKENGIESRSV
                     MFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAA
                     RSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR"
BASE COUNT         4264 a         5288 c         5989 g         5136 t
ORIGIN      
        1 tcccgcctac gcgggaatga cggcaaggtg gcagtaaacg ttttaaacag tattgattgt
       61 caatgaaact caaaaggccg tctgaaaccc atttttcaga cgatctccat aaaaaattat
      121 ttatcaaata cccgtaacta ggaacgaacc atgttacaaa tcgaaatcga cggcaaacaa
      181 gtatctgtgg agcagggcgc gacggtgatt gaagccgcgc acaagctcgg tacttatatt
      241 ccgcatttct gttaccacaa aaaactttcc atcgccgcca actgccgtat gtgtctggtg
      301 aacgtagaaa aagccccaaa acccctgcct gcctgtgcca cgccggttac agacggcatg
      361 attgtgcgta cgcattcggc aaaagcccga gaggcgcagg aaggcgtgat ggagttcctg
      421 ctcatcaacc atccgcttga ttgtccgacc tgcgaccaag gcggggaatg ccagttgcag
      481 gatttggcgg tgggctacgg aaaaaccacc agccgctaca ccgaagaaaa acgttccgtc
      541 gtcggcaaag acatggggcc tttggtttcc gccgaggaaa tgagccgctg tatccactgc
      601 acccgctgcg ttcgtttcac tgaagaaatc gccggtttgc aagaaattgc gatggtgaat
      661 cgcggcgaac actccgaaat catgcccttt atcggcaaaa cggtggaaac cgagctgtcg
      721 ggcaacgtca tcgatttgtg tcctgtcggc gcattgacca gcaaaccgtt ccgcttcaac
      781 gcgcgtactt gggaattgaa ccgccgcaaa tccgtttccg cccatgacgc tttgggcagc
      841 aacctgatta tacaaaccaa agaccatacc gtccgccgcg tgttgccgct ggaaaacgaa
      901 gcgattaacg aatgttggct gtctgaccgc gaccgtttcg cctacgaagg cctgtatcac
      961 gaaagccgtc tgaaaaaccc gaaaatcaaa cagggcggcg agtggatgga cgtggattgg
     1021 aaaaccgcgt tggaatatgt ccgcagcgcg attgaatgta tcgccaaaga cggcaaccaa
     1081 aaccaagtcg gcatttgggc caatccgatg aatacggttg aagagctgta tctggccaaa
     1141 aagcttgcca atggtttggg tgttaaaaac tttgccaccc gtttgcgcca acaagacaaa
     1201 cgtctttcag acgaccttaa aggtgcacaa tggttgggac aaagcattga atctttggct
     1261 gacaacgatg ccgtattggt agtcggcgcg aacttgcgca aagaacagcc gctcctgacc
     1321 gcccgcctgc gccgcgccgc caaagaccgt atggccttga gcgtattggc cggcagtaaa
     1381 gaagaattgt ttatgccgct tctgtctcaa gaagccgcac atcccgacga atgggcaggc
     1441 cgtctgaaaa aactgtctgg caatgcggaa cacgcagtta ccgccagcct gaaaaacgct
     1501 gaaaaagcag cggtgatttt gggtgcggaa gtgcaaaacc atcctgatta cgccgcgatt
     1561 tatgccgccg ctcaagagct ggcagatgcg accggcgcag tgctgggtat tttgccgcaa
     1621 gccgccaaca gcgttggtgc ggatgtcttg ggcgtgaact cgggcgagag cgttgccgaa
     1681 atggcaaacg cgccgaaaca ggcggtcttg ctactcaacg tcgaaccgga aatcgatacg
     1741 gcggacggtg cgaaagccgt ggccgcgttg aaacaggcga aaagcgtgat ggcgtttaca
     1801 ccgtttgtca gcgaaacgct gctggatgtg tgcgacgtgt tgttgccgat tgcgccgttt
     1861 accgaaacat cgggcagctt catcaatatg gaaggccgtc tgcaatcctt tcacggcgtg
     1921 gtacaaggct tcggcgactc gcgtccgctg tggaaagtgt tgcgcgtatt gggcaacctg
     1981 tttgacctgc aaggttttga ataccacgat accgccgcga ttctgaaaga cgcgctggac
     2041 gcggaaagcc tgccgtccaa actggacaac cgcgtgtctt cgactcaaaa agattttcag
     2101 acggcatcaa gccgcctcgt gcgcgtgggc ggagtgggca tctatcacac cgatgccatc
     2161 gtgcgccgtt ccgcaccgtt gcaggcaacc gtccatgccg ccgtgcctgc cgcgcgtgtg
     2221 aatccaaaca cattggcacg cttgagcctg caagacggac aaattgctgt cgccaaacaa
     2281 aacggcgcaa gcgtatcggt tgctgtcaaa gccgatgccg gtttgcctga aaacgtggtg
     2341 catctgccgc tgcataccga aaatgccgcg ctgggtgcgt tgatggacac tattgaactg
     2401 gcgggagctt gatcatgcaa gaatggttcc aaaacctctt tgccgcaacg ctcggtctgg
     2461 gcgatttggg tatcaccgtg ggcttggtgg tatccgtcat cgtcaaaatc gtgattatcc
     2521 tgattccgct gattctgacc gtcgcctacc tgacttattt cgaacgtaaa gtcatcggct
     2581 tcatgcagct tcgcgtcggc ccgaacgtaa ccggcccgtg gggcctgatc cagccgtttg
     2641 ccgatgtgtt caaactcttg tttaaagagg taacccgtcc gaagctgtca aacaaagccc
     2701 tgttctacat cggcccgatt atgtcgcttg ctccgtcttt cgcggcatgg gcagtgattc
     2761 cgttcaacga agaatgggtg ctgaccaaca tcaatatcgg tcttttgtac attctgatga
     2821 ttacctcgct gtcggtttac ggcgtaatca tcgcgggctg ggcttccaac tccaaatatt
     2881 cgttcttggg tgcaatgcgt gcttccgcac aaagcatttc ctacgagatt gccatgagtg
     2941 ccgcgctggt gtgtgtcgtg atggtgtcgg gcagcatgaa cttctccgac atcgttgccg
     3001 cgcaggcaaa aggtatcgcg ggcggttccg tattctcgtg gaactggctg ccgctgttcc
     3061 caatcttcat cgtctatctg atttccgccg ttgccgaaac caaccgcgca ccgtttgacg
     3121 tggcagaggg cgagtccgaa atcgttgccg gacaccacgt tgaatattcc ggcttcgcat
     3181 tcgcgctgtt cttccttgcc gaatacattt tcatgattct gattgccgcg ctgacatcgc
     3241 tgatgtttct cggcggctgg ttgtctccgt tcccgcaaag ctggggcttt atcggtacgc
     3301 cttccgcatt ctggatgttt gtgaaaatgg cggcagtgtt gtactggtac ctgtggatcc
     3361 gtgcaacctt cccgcgctac cgttacgacc aaatcatgcg tttgggctgg aaagtgctga
     3421 ttccgatcgg cttcgcctac atcgtgattt tgggcgtgtg gatgatttca ccgctgaatt
     3481 tgtggaaata agtttcagac ggcatcttga ggccgtctga acaaagcgat tttgaatacc
     3541 taacgaaatc cctgttttga gggaacataa tatggctaac ttagtaaaaa cctttctgct
     3601 cggcgagttg gtaaaaggca tgggcgtaac gctcaaaaac ttttttgccc gcaaagacac
     3661 aatttatttc cccgaagaga aaacgccgca atccgtgcgt ttccgtggcc tgcacgcgca
     3721 gcggcggtat ccgaacggcg aagagcgctg tatcgcgtgt aaattgtgcg aggcagtttg
     3781 tccggcaatg gcgattaaca ttgaatcgga agaacgcgaa gacggcaccc gccgcaccaa
     3841 gcgttacgat atcgacctga ccaagtgcat cttctgcggt ttctgcgaag aggcctgccc
     3901 gaccgatgcg attgtggaaa cgcatatttt tgaataccac ggcgagaaaa aaggcgactt
     3961 gcacatgacc aagccgatcc tcttggcaat cggcgacaaa tacgaagctg aaatcgccaa
     4021 acgcaaagcc gctgatgcgc cgtatcgtta aggagcagac gaatgacttt ttccgcgatt
     4081 ctgttctata tccttgccgc catcgtccta tacggcgcgc tgcgtaccgt tacagcgaaa
     4141 aaccctgtcc acgccgcttt gcatctggtg ttgaccttct gcgtgagcgc gatgctttgg
     4201 atgctgatgc aggctgagtt tttgggcgtg acgctggtgg tggtttacgt cggcgccgtg
     4261 atggtgttgt tcctgttcgt cgtgatgatg ttgaacatcg acattgaaga aatgcgtgcc
     4321 ggtttctggc ggcacgcgcc tgttgccggt gtggtcggca cattgttggc agttgccctg
     4381 attctgattc tggtcaatcc gaaaaccgac cttgccgcat ttgggctgat gaaagacatt
     4441 cccgccgatt acaacaatat ccgcgatttg ggcagccgta tttataccga ttatctgctg
     4501 ccgtttgaat tggcggcggt attgctgctg ttgggtatgg tggccgcgat tgcgctggtt
     4561 caccgtaaaa cggttaatcc gaaacgtatg gaacctgccg accaagttaa agtacgcgcc
     4621 gaccaaggcc gtatgcgctt ggtgaaaatg gaagccgtga aaccgcaaac cgaatctgcc
     4681 gaagaaagcg aagtttcaga cgacctcaag ccgaaagagg agggcaaagc atgattacct
     4741 tgacgcatta tctggtattg ggtgcgctcc tgttcggtat cagcgcgatg ggtatcttca
     4801 tgaaccgcaa aaacgtgctg gtattgttga tgtccattga gctgatgctt ttggcggtga
     4861 acttcaactt tatcgccttt tcgcaacatt tgggcgatac tgccggacaa attttcgtat
     4921 ttttcgtact gaccgttgct gctgccgaat ctgccatcgg tttggcaatt atggtgctgg
     4981 tgtaccgcaa ccgacaaacg attaacgttg ccgatttgga cgagttgaaa gggtaaaggt
     5041 aggttgggtc gagacctgac aagacaccga tgccgtctga aaacccgata ggaaaaacga
     5101 tgaaatccat agacgaacaa agcctgcata atgcccgccg cctgtttgaa agcggcgaca
     5161 tcgaccgtat cgaagtcggt accaccgcgg gcctgcaaca gattcaccgt tacctgttcg
     5221 gcggcttata tgattttgcg ggtcaaatca gggaagacaa catttccaaa ggcggttttc
     5281 gttttgccaa cgccatgtat ttaaaagagg ctttggttaa aatcgagcag atgcccgagc
     5341 ggacttttga agaaatcatc gccaaatatg ttgaaatgaa cattgcccat ccgtttttgg
     5401 agggtaatgg cagaagtacc cgcatctggc tggatttggt gctgaaaaaa aacctgaaaa
     5461 aagtcgtgaa ctggcaaaat gtaagtaaaa ccctgtattt gcaggcaatg gaacgcagcc
     5521 ccgtcaacga tttagaactg cgctttctgt taaaggacaa cctgactgac gatgtggaca
     5581 accgtgaaat catctttaaa ggtatcgagc agtcgtatta ttacgaaggg tatgaaaaag
     5641 gctgagggtc gtctgaaaag cgatttcaga ctgtttcaga cgacctgatt cggtaggtga
     5701 tcagacggga gcggatgaga aaagaaattc tgggtaagaa taatccggtc tgaaatattg
     5761 gaagaagaat gatggataaa aatcagttag aacaagaatt tcataaagcc atgttaaata
     5821 tttatcagga ggctttgaat ttgccgcaac cttacaaggc gacacgattt ttacaaattg
     5881 taaatgaatt tggtggtaaa gaggcggcgg ataaattatt aagtacgggg gaaaagaaga
     5941 ctcagaccgg ttttacagag ctgattttga gtggtggcgg agtccacgcc ttgaaataca
     6001 gtatggaata tctggtgtta caaaagccgt ggtgtgattt atttactgaa gagcaattag
     6061 ctgtggcacg caaacgattg gagcgtgttg gatttgtttc tccgaagtaa ttttgtacga
     6121 aacaaacata gatttttaaa tcaatcggat tcaatcaaat gaacgacatg actttatatc
     6181 tcatcattgc ccttgtgcct ttggcaggct cgctgatcgc gggtttgttc ggcaacaaaa
     6241 tcggacgtgc cggtgcgcat acggttacga tactcggcgt ggcggtgtcc gccgtgctgt
     6301 cggcttatgt gttgtggggc tttattgacg gcagccgcgc caagtttgac gaaaacgtct
     6361 atacctggct gacaatgggc ggcttggatt tctccgtcgg ctttttggtc gatacgatga
     6421 cggcgatgat gatggtcgtg gtcaccggcg tatcgctgat ggtacatatc tataccatcg
     6481 gttatatgca cgatgaaaaa atcggctacc aacgcttctt cagctatatt tctttgttta
     6541 ctttcagcat gttgatgctg attatgagca acaacttcat ccagctcttc ttcggttggg
     6601 aagcggtggg cttggtgtcg tatctcttga tcggtttcta tttcaaacgt ccgagcgcga
     6661 catttgccaa cctgaaagcc tttttgatca accgtgtcgg cgacttcggc tttttgctcg
     6721 gtatcggctt ggtgcttgcc tatttcggcg gcagcctgcg ctatcaagat gtattcgctt
     6781 atctgcctaa tgttcagacg gccaccattc aattgttccc cagtgtggaa tggtctttga
     6841 ttactgtaac ctgtttgctc ctgtttgtcg gtgcgatggg taaatcggca caattcccgc
     6901 tgcacgtctg gctgcctgat tcgatggaag gcccgacccc gatttctgca ttgattcacg
     6961 ccgcaaccat ggttaccgcc ggtctgttta tggtatcgcg tatgtcgccg atttatgaga
     7021 tgagtagcac tgcgctgtct gtcatcatga tgattggtgc gattaccgcc ctgtttatgg
     7081 gtttcttggg cgtgattcaa aacgatatca agcgcgtggt tgcgtattcc accctgtcgc
     7141 aactgggcta tatgaccgtg gctttgggcg cgtccgccta ttccgtggcg atgttccacg
     7201 tcatgaccca cgccttcttt aaagccttgc tgttcttggc ggcaggtagc gcgattatcg
     7261 gtatgcacca cgaccaagat atgcgccata tgggcaacct gaaaaaatat atgccggtta
     7321 cttggctgac tatgctgatc ggcaatttgt cgctgatcgg tacgccgttc ttctccggct
     7381 tctattctaa agattcgatt atcgaagcag cgaaatacag caccctgccg ggcagcggct
     7441 ttgcttattt tgccgtcctt gccagcgtgt tcgttaccgc gttttacgcg ttccgccaat
     7501 actttatggt gttccacggc gaagagaaat ggcgcagcct gcctgaacat catgacgatc
     7561 atcatggtga agaacatcac ggcttgggca aaaacgacaa tccgcacgaa agcccgctgg
     7621 ttgttaccct gccgctgatt ttgcttgcca tcccgtccgt catcatcggc tatgttgcca
     7681 tcgagcctat gctttacggc gatttcttta aagacgtgat tttcgtcaat accgacgcgc
     7741 atccgaccat gcacatcatg aaggaagagt tccacggcgc attggcaatg gtgtcgcaca
     7801 gcctgcattc gcctgtactc taccttgcta ttgcaggtgt cttaagcgca tggcttttgt
     7861 acgtcaaact gccgcacctg cctgcgaaaa ttgcacaggc gttccgtccg atttacgttt
     7921 tgtttgaaag caaatactac ctcgacgccc tgtatttcaa cgttttcgcc aaaggcacac
     7981 gcgcattggg taccttcttc tggaaagtcg gcgataccgc cattatcgac aacggcatcg
     8041 tcaacggctc tgccaaactg gtcggcgtaa ttgccgcgca agtgcgtaaa gcccaaaccg
     8101 gctttatcta cacctacgcc gccgctatgg tattcggcgt attggtactg ctcggcatga
     8161 ccttctgggg attgttcaga taaggatgag gtttcagacg gtctcttaaa acgtcgtctg
     8221 acaaaccaac ccgtacaacg atatttttat tttaaccaca ggttaaccac tatgttttcc
     8281 aactacctac tcagcttggc aatatggata cccatcgccg caggtgtgct ggttttgtcg
     8341 accggtaagg acagccgtgc gccgctggcg cgtgtgctcg ccttcatggg tgcgcttgcc
     8401 ggtttcttgg taacgctgcc cctgtttacc ggtttcgacc gtttgagcgg cggctatcaa
     8461 tttaccgagt tccacgagtg gattccgctg ctgaaaatca actatgcatt gggcgtggac
     8521 ggtatttcag tgctctttat catcttgaat gcgtttatta cgctgttggt ggtgctggcg
     8581 ggttgggaag ttattcagaa acgcccggcg cagtatatgg cggcattcct gatgatgtcg
     8641 ggtttgatta acggtgcgtt tgccgcgcag gatgcgattc tgttttatgt gttcttcgag
     8701 ggtatgctga ttccgctgta cctgattatc ggtgtatggg gtggcccgcg ccgcgtttat
     8761 gcgtcggtca agctgttcct ctatacgctg atgggttcgc ttttgatgct ggttgccatg
     8821 gtttacctgt actatcagac aggcagcttc tctattgtcg atttccaaaa catcaagcag
     8881 attccattgg gcgtacaaca gcttttgttt gtggcattct tcctgtcatt tgccgtaaaa
     8941 gtgccgatgt tccctgtgca cacttggttg ccggatgccc acgttgaagc gccgaccggc
     9001 ggttcgatgg tgttggcggc aattacgctg aaactgggtg cgtatggttt cttgcgtttt
     9061 atcctgccga ttatgccgga tgcggcacgc tattttgccc ctgtgatcat cgtattgagc
     9121 ctgattgccg tgatttatat cggtatggtg gctttggtgc aaaccgatat gaaaaaactg
     9181 gtggcgtatt cgtctatcag ccatatgggt tttgtaacgc ttgggatgtt tttgtttgtt
     9241 gacgggcagt tggacgactg ggcgttgaaa ggcgcaatca ttcaaatgat ttcgcacggt
     9301 ttcgtgtcgg cggcgatgtt tatgtgtatc ggcgtgatgt acgaccgcct gcatacccgc
     9361 aatattgctg actatggcgg cgtggtcaat gtgatgccta agtttgcggc gtttatgatg
     9421 ttgttcggta tggccaatgc cggtctgcct gcaacttccg gcttcgtggg cgagtttatg
     9481 gtgattatgg gcgcggttaa agtgaatttc tgggtgggcg cgttggcggc catgaccctg
     9541 atttacggtg cgtcttatac cctgtggatg tacaagcgcg tgattttcgg cgcgatccac
     9601 aatccgcacg ttgccgaaat gaaagacatc aactgccgcg aatttgcgat tctggcgatt
     9661 ttggcggttg tggtattggg tatgggtctg tatccgaacg catttatcga agtggtgcat
     9721 caggcggcaa acgatttgat tgcccatgtg gcacaaagca agatttgagg tgtgtaaatg
     9781 aactggtctg atttgaattt gatgcccgcc atgcccgaaa tcgtgctgct tgcgctgctg
     9841 gtgttattgt tgctggcgga cttgtgggtc agtgatgaca aacgccggtg gacgcattac
     9901 ggcgcgttgg caacggtggc ggttacggct gtggtgcagc ttgccgtttg ggaacagggc
     9961 agcacgtctt cgttcaacgg catgtatatt gcagacggta tgtcgcgttt ggcaaaaatg
    10021 gttttatatg ccttgacgtt tgccctgttt gtttatgcca agccctacaa ccaagtgcgc
    10081 ggtattttca aaggcgagtt ttacaccctg tcgctgtttg ccctcttggg catgagcgtg
    10141 atggtgagcg cggggcattt tttaactgcc tatatcggtt tggaactctt gtcgctcgcc
    10201 ctttacgccc tgattgccct gcgccgcgat tccggctttg ccgccgaagc cgccttgaaa
    10261 tattttgttc tgggcgcgct ggcatccggc ctgctgctct acggtatttc tatggtttac
    10321 ggcgcaaccg gttcgctgga atttgccggc gtgctcgcct cttccttcaa tgaagaagca
    10381 aacgaatggc tgttgaaact gggtctggtg tttatcgtcg tcgccgttgc gttcaaactc
    10441 ggcgcggtgc cgttccatat gtgggtgccc gacgtgtatc acggcgcgcc cacttctgtt
    10501 accgccctag tcggcactgc cccgaaagtc gccgccgtcg ttttcgcttt ccgcatcctc
    10561 gttaccgggt tgggaaccgt gcatcatgac tggtctctga tgtttgccct gcttgccgcc
    10621 gcctcgctgc tggtcggcaa ccttgccgcc atcatgcaga ccaatatcaa acgtatgctc
    10681 gcctattcca ccgtatcgca tatgggcttt atcttgttgg cgtttatggc aggcgcggtc
    10741 ggctttgcgg cgggtctcta ttacgccatt acctacgcgc tgatggcggc ggcagggttc
    10801 ggcgtgttga tggtgttgtc ggatggggac aacgagtgcg aaaacatcag cgatttggca
    10861 gggctgaacc aacaccgcgt atggcttgcc tttttgatgc tgctggttat gttctccatg
    10921 gcaggcattc cgccgctgat gggtttttac gccaaattcg gcgtgattat ggcactcttg
    10981 aaacaaggct atgtttggtt gtccgtattt gccgtcgtga tgtcgctgat tggtgcgttc
    11041 tactacctgc gcgtggtcaa agtcatgtat tttgacgaat ccggccgcgc ccatcccacc
    11101 gtcggcggca acaatgccgc aaaattcctt ttgagcgtca acgcgctgct gttggtgctg
    11161 tggggcatta tgccgcaaac cgttatcgac tggtgcgcca aggcgttgga aaacacgctg
    11221 taagccgccg caacggcagc cgtgtcagag gctgccgttt ttgttaagat atgccgttcc
    11281 gcaatgcagt tcagacggca tcgccgccga caatgcccaa acagaaagcc cgccatgacc
    11341 gcatccatgt acatcctttt gctgcttgcc ttgatttttg ccaacgcccc cttcctcacg
    11401 accaggctgt tcggcatcgt accgctcaag cgcaaacatt tcgggcacca cttgatcgag
    11461 ctggcggcag gtttcgcgct gaccgccgtt cttgcctaca tcctcgaatc ccgtgcggga
    11521 gcggtacacg atcagggttg ggagttttac gccaccgtcg tctgcctgta cctgattttt
    11581 gcgtttccct gtttcgtgtg gcggtatttt tggcacacgc gcaacaggga ataggcaggc
    11641 ataggaatgc cgtctgaaac ctgttcagac ggcatttgtt tcattcaagt gcaggccggc
    11701 atcgctgtgc cggcacgttt cagccggcga tatacgccgg ttttaatatt tgcgggcgac
    11761 tgcaaattct gccaactgcc gcaggcgcag ggctttgtcg ccgaagggtt cgagcagcgc
    11821 gaccgcttcg gcaaccagtt tgtgtgcgta tgagcgcgcc gcttccaagc ccatcagttt
    11881 cacataagtc ggcttgtcgt tgtctgcgtc tttgcccgcc gttttgccca aagtcgccgt
    11941 gtccgcttca caatccaaca catcgtcaat gacttggaac gccagcccca gttttgccgc
    12001 gtaagcgtcc aatacggaaa gttccgcatc tgacagatca ggacacgccg tcgcccccaa
    12061 taaaaccgcc gcacggatta gcgcacccgt tttcaggctg tgcatctgtt ccaaatcggc
    12121 ttgaaccatt tgtttgccga cattcgccaa atcgattgcc tgaccgcccg ccatacccct
    12181 gctgccgccc gctttcgcca acaccgacaa cattgccaac tggcgtgcgg cgggcagttc
    12241 tgtcggacga cttaacacgt cgaaggcttg ggtttgcaaa gcatcgccgg tcagcagtgc
    12301 gtttgcttcg ccatatttga tgtggcaggt cggtttgccc cggcgcaggc tgtcgttgtc
    12361 catcgccggc atatcgtcgt gaaccaaaga atagacgtgg atcatttcga ttgccgccat
    12421 tgcctgttct actgcttcat gcacggcttc gcctaattcc gaagctgcca gaaccagcat
    12481 cggacgcaga cgcttgccgc cgtccaaagc cgcatagcgc atcgcttcgt gcagcgtgtg
    12541 cgggatttcg ttttcagacg gcaaaaagcg ttccagcagc agctctgtct gtgcctgcgc
    12601 cctctgttgc cacgctttca aatcattcgt cggattcaag gttcaactcc ttcggcccgt
    12661 ccgcatccaa aacctgtaat ttctgttcga cttgtgccag cttggtttgg cagtacctga
    12721 ccagctcgtt gccttcctga taggcggcaa gcgcgtcttc caagggcatt tcaccctgca
    12781 tagactgcgt cagcgattca aggcgcgaca aggcttcttc aaacgatttc ggggtaattt
    12841 ttttcatggt gtcgggagtt tctgtaaaaa cggaattgta gcatttctga aaaccggatg
    12901 ccgtctgaaa cagcaggatt tcagacggca ttgttttgtc ctgcaaacgg caaggcgtta
    12961 cccgggcagt tcgtcggtga tgccctgcaa aaaggcgagg cgttcggggc ttgccgcccc
    13021 ggtttcggcg gcggctttga aggcgcagcc gggttcggcg cggtgggtgc agttgtggaa
    13081 gcggcattgc ccgacaaggt ggcggaaatc ggggaaatag cgcggcaaat cggcggcttg
    13141 gaggtggtgt aaaccaaatt cttgcaaacc cggggagtcg atgagttggg tttcgccgtt
    13201 caaatcataa agccgggcgt gggtggtggt gtgttttccc gagtcgagtg cggcggaaat
    13261 gtcgccggtg cgggcggttt ggctgcctaa aagggcgttg gtcagggtgg atttgcccat
    13321 accgctctgc ccgagcagga tgttgctgtg cccttgcagg acggggcgca ggaggtcggc
    13381 gttttccagc gcacgggttt cgatgacggg ataacccagc gtttcgtaga atttgagttt
    13441 ttcgcgccaa agggcggttt cgggcaggtc ggctttgttc aggacgatga cggcttcaat
    13501 accggcggct tcggcggcaa gcagggcgcg ttgcagcagc cgcatgctcg gactcgggac
    13561 ggcggcggta acgataagga gttgggtaac gttggcggcg atgagtttgg ttttccacgc
    13621 gtcttggcgg tagagcaggc tttggcgcgg taaaaaatct tcaatcacaa cttgttcggc
    13681 gttgacgggg ctgatgcgga cacggtcgcc gcaggcgaaa tcgacgcgtt ttttgcgcgt
    13741 gctggcttcg taggttgtgc cgtcgggcgt gcgcacgatg tagcggcggc cgtagctggc
    13801 ggtaatttgg gcggtgtcgt tcatggtttc tttggggttg ggtgtggaaa tgccgtctga
    13861 aaacgggtgt tcggacggca tcggttcagt cgtgctgcca ctcgacgtgt tcgttgagga
    13921 agccgccgct ctggtgcgcc cagagtttgg cgtaaagccc gcgtttttcg aggagttcgg
    13981 cgtgtgtgcc ttcttcgatg atgcggcctt tgtcgaggac gacgagcctg tccattgcgg
    14041 cgatggtgga aaggcggtgg gcgatggcga tgacggtttt gccgttcatc attttgtcga
    14101 ggctttcttg gatggcggct tcgacttcgg aatcgagcgc gctggtggct tcgtccaaaa
    14161 gaagaatcgg tgcgtctttg agcatcacgc gggcgatggc gatacgctgg cgttgaccgc
    14221 cggagagttt cacgccgcgt tcgccgacgt gcgcgtcata gccgcgccgc cctttggcat
    14281 cggaaagttc ggggatgaag ccggcggctt cggcgcgttc ggcggcggaa accatttcgg
    14341 catcggtcgc gtcggggcgg ccgtaaataa tgttgtcgcg cacggaacgg tgcagcagcg
    14401 aggtatcttg cgtgaccaaa ccgatttggg cgcgtaaaga ttcttgggta acgccgctta
    14461 tgtcctgccc gtcgatcgaa accgtgccgc tttgcggttc gtagaagcgc aaaagcaggt
    14521 tgacgatggt ggatttgccc gcgccgctgc gtccgatcaa gccgactttt tcgcccgggc
    14581 ggatggtgag gttgaagccg ttgagcagcg gtttgccggc ttcgtagcag aaatcgatgt
    14641 gttcaaattt gattgcgcct tgcggcacgt tcagcggcag tgcccggggc ttgtcgagga
    14701 tggtgtgcgg tttggacagg gttgccatgc cgtcgccgac ggtgccgatg ttttcaaaca
    14761 gccgcgcgga ttcccacata atgtattgcg acaaaccgtt gacgcgcaac gccatggcgg
    14821 tggctgtagc aaccgcgccc acgccgacct gcccgttgtg ccagagccag atgcccagtg
    14881 cggcggtgga gagggtcagg gaggtgttga cgatgaagct gcacgaatgc agcagcgtcg
    14941 ccagccgcat ttgggcgcgc accgtaacca taaattcttc catcgactgc ttggcatagg
    15001 cggcttcacg cgcgccgtgg gagaagagtt tgacggtggc gatattggaa taggcatcgg
    15061 taatgcggcc ggtcatcagc gagcgggcat ccgcctgcca tgcggcggtt tgccccaatt
    15121 tgggaatcag caggcgcatc accgaagcga aaccgacaat ccagccgata aagggcagca
    15181 gcagccatga gtcgagcgag gcgagaatca cgccggaggt aatgaaatac accgacacat
    15241 aaacgaccat atcggcaacc gtcatcaccg cgtcgcgcaa cgccagcgcg gtctgcatga
    15301 ctttggcgga cacgcgtccg gcaaattcgt cctgataaaa accgaggctt tggttcagca
    15361 tcaggcggtg gaagttccag cgcaggcgca tggggaacac gccctgaagg gtttgcaggc
    15421 gcacgttgga cgcggcaaac gcccacacga ccgaaaacac catcatcgcc gccattgccg
    15481 ccagttccca acctttttcg gcaaacaatt cggcgggcgc gtatttgccg agccactcca
    15541 cgattttgcc cataaattga aaaatcaggg cttccataat gccgatgccg gcggtcagcg
    15601 cagccagggc ggctatccat ttccgcacgc cggccatgct gctccagaca aaccgccaca
    15661 agcctttttc tggcgttttc ggggcggctt cgggataagg gtcgattcgg gactcgaacc
    15721 aggaaaagat tttgttcaac attgttttcg atttcggtaa aacagtttca gacggcatca
    15781 aacataatgc cgtctgaaag gaaggacaat aacgccattt tacgggaaaa gccgtcggga
    15841 agacagcgcg aggcggaaac gcagggtttc gtcagggcaa acgtcgcgcc gccttcagac
    15901 ggcattattt cagcaggttt ttcaaagcaa ggcgcacgcc ttcgcccacg tccgtccctt
    15961 tcggaacgcc tttgaccgcc gcttttgcct cgcgttcgct gtaaccgagg gcgaggagcg
    16021 tgccgacgat gtcttccgtt tcgtcggcgg cgggtgcggc ggcaaacagc ccgtccgtta
    16081 ccgcatgcgc gaccagcttg ccgcgcagtt ccaaaaccat gcgttcggcg gtttttttgc
    16141 cgattcccgg ggcggaggag aggcgtttga catcttcttc tgcaaccgcc tgcgccagct
    16201 cgtctgccgt catcgccgac aaaatgccca aagccgtttt cgcgccgatg ccgctgacct
    16261 taatcagttg gcggaatgtt ttgcgttctt ccgcagtggc aaaaccaaat aaaagatgtg
    16321 cgtcttcccg aatgataagc tgggtaaaca gttgtacgct ttcacccacg ggcggcaggt
    16381 tgtagaaggt ctgcatcgat acgtcggcct catagccgac accgttgaca tcgatgacga
    16441 tttgcggagg gtttttttca accagtttgc cggtcagtct gctgatcatg tatgccgaat
    16501 cctgaagtgt cgggtgcaaa atgccgtctg aaaccggttc gggcttcaga cggcacggat
    16561 tgtatcaaat tcagtcgtcg cggcgggagg aaatcacgcg gccggtacgg gcatcgacaa
    16621 cgactttgta ttcctgtccg tttttgacga tttcgacatc atagtgcgga cggccgttgt
    16681 cgtgttcgag atcgatgtcg gtgattttgc cgccgacacg cgccaacgct gctttttcgg
    16741 cttgggcgcg gctgatgatt ttgtcttgtt tgctgtgttg gtgtgcggcg tgtccgtggt
    16801 cgtcatcgcc gtgtccgtcg tggtgggcga gtgcgggggc ggaaatgccc atcagtgcgg
    16861 ttgcggcggc ggtcaagaga aggcgtttga agttcatgtt ttgctcctgc gaagtatctg
    16921 gtggtgtttg aaagacgtaa aggcgggaca tcaaccggcg gtcaataccg tctgaaccat
    16981 accgcgcgcc tgagcttcgg cctcggcggc gcgttcctgc gaggcaaacg gacccatttt
    17041 gacgacgtat tcgtaacggc gtttttcaat ggcgaggttc gggcttgatg tcgaagcggc
    17101 gaagttttgg gcggcttggt tcagataggc ttgtgcttcg tgttccgtac cgaaagattt
    17161 caagtcgata aagatgtctt tgttttcggc aaccggtgcg gatttgcccg ggacgatttg
    17221 ttcgattttg acgtgcgccg tcccttggct gacaaagccc aatttttgcg cggcggcttt
    17281 ggatacgtcg atgatgcggt tgccgtggaa ggggccgcgg tcgttgacgc ggacgatgac
    17341 gcttttgccg tttttggtat tggttacgcg cacatagctg gggatgggca gggttttgtg
    17401 ggcggcggta aaggcgttca tatcgtatcg ttctccgccg gaagttttgc gcccgtgaaa
    17461 cctgccgccg taccacgagg cgttgccggt ttgcgtgaat tcggcgactt ggtttttcgg
    17521 cgtgtagcgt tttccggcga ctttgtagct gcggttggcg gaggcgtgca gtttttctgc
    17581 cttgaccact gcgtcggcgg atgccgtctg aagggagtgt gtgccgaatg cggcggtgag
    17641 aaggaaaagg gtttttcggg ttaaagtcaa aacgtgttcc gttcttgagt tgaagacgaa
    17701 tgggcatcat gcccgccgga tacgttccga accgccgtac agtgcggacg gcggttcgga
    17761 atgtgtccgg ataggttttc agacggcatg aacttgcgtt caaacgccgc ctgcgtaacc
    17821 gtgttgccgc cacgcttcaa agagaatcac ggcaacggta ttggaaaggt tcatactccg
    17881 gctgccgggc tgcatgggca ggcggatttt ttgcgcggcg ggcaggctgt cgaggatgtc
    17941 ggcaggcagt ccgcgcgttt ccggcccgaa cagtaaaacg tcgccttttt gaaacgcggt
    18001 ttcatcgggg cgcgccgtgc ctttggtggt cagggcgaaa atgcgcctgc ctgcgagtgc
    18061 cttgaggcag tcgtcgaagt tttcgtacac cgtcaggctg gcgaattcgt ggtagtcgag
    18121 cccggcgcgt ttcattttgg cggaatccaa tgggaagccg agcggtttga caaggtgcaa
    18181 atccgcgccg gtattggcgc acaggcggat gatgttgccc gtgttcggcg ggatttccgg
    18241 ctggtataaa acgatggtaa acataaatat caatcactta taggcgcgta accttgccac
    18301 aaggcggatg gggtgtcaaa aaatttagtt attttttcat tggcgtgcgt gccagcgtcc
    18361 agcagcagat gcggttcgcg cccgattttt tcagcgtctt tgccaattcg tccagcgtcg
    18421 cgccggtggt aaagacatcg tcgattaaca gaatattaca gttttccggt atcggtgtgc
    18481 ggatttcaaa ggcgtttttg atgtttcgcc gccgttcgct gcctttgagc gtgctttgcg
    18541 gcgggcggtg gtgtcggaat acggtgtgtc ggggcagtat ctgccagccg tagcgttgtg
    18601 ccaacaaccc gacgatgctt tcactttggt tgaacccgcg ttgcagcagc cgctccctgc
    18661 ttagcggtac gggcaggacg aaatcgaaac attcgtctgc aagccggtcg ggcggattct
    18721 gcatcatcag gtctgccagc ggctgcacca tgctcaaatc agccaagtgc ttcagcgcgt
    18781 gtatcatatt gctgacgggc ggttcgtaat gcagcgaagc ccacatccgg tcgaatgcgg
    18841 gcggtttttt ctgacagccg ccgcacaccg cgccgccttg gatgtgcctg aaacacaggg
    18901 ggcagctgtt tgccgcgtcg gtgcggtatg ccgccaaatc gtcgcggcag ccggcgcaga
    18961 tgccgtctga aacgccggac gaaccgtggc ataatacgca acgcctgata gtgggcgcgt
    19021 ctgcgatgcg ccgccaacga gagagaaaat ccatgcctga tgccgtcaaa aaagtttacc
    19081 tgatacacgg ttggggggcg aaccgccaca tgttcgacga tttgatgccg cgcctgcctg
    19141 caacgtggcc ggtgtccgcc gtcgatttgc ccggacacgg cgacgcgccc ttcgcgcaac
    19201 ccttcgatat tgaggcagcc gccgacgctg ttgccgcaca aatcgatacg cccgccgaca
    19261 ttctcggctg gtcgctcggc ggattggtcg cgctgtatct ggcggcgcgc catcccgaca
    19321 aagtccgttc gctctgcctg acggcgagtt tcgcacggct gacggctgcc gaagattatc
    19381 ccgaagggct tgccgcgcct gcactgggca aaatggtcgg cgcgttccgt tcggattatg
    19441 ccaaacatat caaacagttt ctacaactcc agcttctgca cacgcctgat gcggacggaa
    19501 tcataggcag aatcctgccc gatttggcac ggtgcggcac gccctccgcc ttacaggaag
    19561 ctttggacgc ggcggaaagg gcggatgcgc ggcatttgtt ggacaagata gatgttccgg
    19621 tactgctggt gttcggcggc aaagacgcga ttacgccgcc gcgtatgggc gagtatctgc
    19681 accggcattt gaaaggcagc aggctggttg tgatggaaaa ggcggcacac gcgccgtttt
    19741 tgagccatgc ggaagcgttt gccgcgctgt accgcgactt tgttgaaggg gtttgacatg
    19801 aatccgcagg acaaatgctg gcaggttcac cgccatctcg ccgaatatgc cgaccaacgc
    19861 ctgacactcg tccgcaacgc gcccaagtat atcctgcttg ccggtgcgga tgcggacatc
    19921 agccgcagcc tgctggcgaa acgctatccg caggcggtat ttgaagaata cgattcccgt
    19981 gcggactttt tggcggctgc cgctgccgcc cgcaaaggcg gtttttggca aaggtttacg
    20041 ggtaagggcg tggtgcaaca ctgccaatcc ccgatcgcgc cgctgcccga agcgtgtgct
    20101 gatatgttgt ggtcgaatct cggactgttg gcggcggaac aaatccttcc tgtgctgcac
    20161 aactgggcgt gcgccttgaa gacggacggg ctgctgtttt ttacctgctt cgggcgcgac
    20221 acttttaccg aactgaaatg ccgtctgaaa gaaaacggca ttgaaagccg cagcgtgatg
    20281 tttcccgata tgcacgactt gggcgatatg cttgctgaaa acggctttta cgaccccgtt
    20341 accgatacgg cgaagctggt gttggattac aaaaaggcgg aaacgttttg ggcggatatg
    20401 gacacgctgg gcgtttggcg ggcgatggcg tggaacgatg aaaacgccgc gcgttcgtgt
    20461 gtcgggacaa tatttgagcg ggaaggcggt ttgggcatta cgctggaaac ggtgtacgga
    20521 cacgccgtga aaaaactgat gctgccgcaa ggggagaacg tggtgcagtt ttttccgaag
    20581 agatgatgtg cagatgccgt ctgaagccgt ttccaggttt cagacggcat ttgtctgtga
    20641 aaaccgacag aaataaagga aatgccgatg tatagtg
//
LOCUS       DAXIFS010000015        20617 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.015, whole genome shotgun sequence.
ACCESSION   DAXIFS010000015 DAXIFS010000000
VERSION     DAXIFS010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20617
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.015"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..234)
                     /locus_tag="ACFOCA_000448"
     CDS             complement(<1..234)
                     /locus_tag="ACFOCA_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HFC6987215.1"
                     /translation="MIIDVKVPMLSESVSEGTLLEWKKKVGEAVARDEILIDIETDKV
                     VLEVPSPQAGVLVEIVAQDGETVVADQVLARIDT"
     gene            complement(334..3162)
                     /locus_tag="ACFOCA_000449"
     CDS             complement(334..3162)
                     /locus_tag="ACFOCA_000449"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HFC6987216.1"
                     /translation="MMDEKLNFSYLFGSNAPYIEELYEAFLENPDAVDEKWKQYFTDL
                     SKQPGTVAVDVAHTPIRESFVTLAKKKIASAVAGGADEAMLKKQVSVLRLISAYRIQG
                     VGAAQLDPLKRIPPRDIEALDPKFHGLSDADMALQFNMGEGDFANRGKLPLSQIISNL
                     KQTYCGHIALEYIYIPNTEERRWVRNYFESVLSTPHYNADQKRRILKEMTAAETLERY
                     LHTKYVGQKRFGVEGGESAIAGLNYLIQNAGKDGVEEVIIGMAHRGRLNVLVNILGKK
                     PGDLFAEFEGRAEIKLPSGDVKYHMGFSSDIATPHGPMHVSLAFNPSHLEIVNPVVEG
                     SARAKQKRLGENGRDKVLPVLIHGDSAFIGLGVNQATFNLSKTRGYTTGGTVHIVINN
                     QIGFTTSDIRDTRSTVHCTDIAKMVSAPVIHVNGDDPERVCFAIQAALDYRKKFHKDI
                     VIDVVCYRKWGHNEGDDPTLTQPMMYKKVSQHPGARALYTEQLIAEGVVTQAEADGYI
                     QAYRDALDKGEHVEQTTLSNFQRTQIDWSKYQGKDWREHIETGLPAADIERLTEKFTA
                     VPEGFALHPTAKRVIEARKAMASGKQAIDWGMAETLAYASLVTKGHGVRISGEDSGRG
                     TFSHRHAVLHDQKREKWDDGTYVPLRHMGEGMGEFLVIDSILNEEAVMAFEYGFACSA
                     PDKLTIWEAQFGDFANGAQVTIDQFLSSGETKWGRLCGLTTILPHGYDGQGPEHSSAR
                     VERWLQLCSENNMQVIMPSEASQMFHLLQRQVLGSYRKPLVIFMSKRLLRFKGAMSPL
                     ENFTEGSTFRPVIGDTAERASNDSVKRVALCAGQVYYDLEAGRAERKLEDDVAIVRVE
                     QLYPFPYDEVKAELAKYPNAKSVVWAQEEPKNQGAFYQIRHRIEDVISEEQKLSYAGR
                     PSSASPAVGYSSKHIAQLKQLVEDALAL"
     gene            complement(3367..4650)
                     /gene="gltA"
                     /locus_tag="ACFOCA_000450"
     CDS             complement(3367..4650)
                     /gene="gltA"
                     /locus_tag="ACFOCA_000450"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004108 - citrate (Si)-synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFC6987217.1"
                     /translation="MSKSIKLNVPGQAGLELPVLEASIGHDVVDIRGLTKNTGLFSFD
                     PGFVSTASCESKITYIDGDQGLLYYRGYPIEQLAEKSDYLEVCYLLIYGELPTPEQKA
                     EFDNTVRRHTMVHEQLTWFFRGFRRDAHPMAMMVGVVGALSAFYQDSLDISNPEHRKI
                     AIYRLISKIPTIAAMCYRYSNGLPFNYPKNNLSYSENFLHMMFATPCEDYKPNPVLAR
                     ALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGASHGGANEAVLKML
                     DEIGDVSNVAAYMEGVKQRKYRLMGFGHRVYRNMDPRASIMRETCYEVLKELGLEDSP
                     KFKLAMELEQIALKDPFFIERKLYPNVDFYSGIVLSALGIPTEMFTVIFALSRSVGWI
                     SHWHEMISDPSLKIGRPRQLYTGSERRDYVPAGER"
     gene            complement(4762..5010)
                     /locus_tag="ACFOCA_000451"
     CDS             complement(4762..5010)
                     /locus_tag="ACFOCA_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HFC6987218.1"
                     /translation="MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELS
                     EFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA"
     gene            complement(5014..5721)
                     /locus_tag="ACFOCA_000452"
     CDS             complement(5014..5721)
                     /locus_tag="ACFOCA_000452"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (quinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HFC6987219.1"
                     /translation="MEKMSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKA
                     QDDTLSFRRSCREGICGSDGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIV
                     DMTQFFKQYHSVKPYVVNDNPIDADKERLQTQEERKELDGLYECILCACCSTACPSFW
                     WNPDKFVGPSGLLNAYRFIADSRDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLN
                     PTRAIGKIKEIMLKRVV"
     gene            complement(5842..7605)
                     /gene="sdhA"
                     /locus_tag="ACFOCA_000453"
     CDS             complement(5842..7605)
                     /gene="sdhA"
                     /locus_tag="ACFOCA_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HFC6987220.1"
                     /translation="MGFPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRS
                     HTVAAQGGISASLGNVQEDRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHM
                     GMPFDRVESGKIYQRPFGGHTAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQF
                     FVEWTAQDLIRDENGDVVGVTAMEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMN
                     TGDGLGICARAGIPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNADGERFMERY
                     APTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHVLLKIDHIGAEKIMEKLPGIREISI
                     QFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVPQGDEYEVPVKGLYAAGECACAS
                     VHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKPLPANAGELTRQRIERLDSQT
                     DGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIAERVKRTEIKDKSKVWNTA
                     RIEALELDNLIEVAKATLVSAEARKESRGAHASDDHPERDDENWMKHTLYHSDTNTLS
                     YKPVHTKPLSVEYIKPAKRVY"
     gene            complement(7608..7949)
                     /gene="sdhD"
                     /locus_tag="ACFOCA_000454"
     CDS             complement(7608..7949)
                     /gene="sdhD"
                     /locus_tag="ACFOCA_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HFC6987221.1"
                     /translation="MVERKLTGAHYGLRDWAMQRATAVIMLIYTVALLVVLFSLPKEY
                     SAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVG
                     CLVYSIKVIWG"
     gene            complement(7943..8320)
                     /gene="sdhC"
                     /locus_tag="ACFOCA_000455"
     CDS             complement(7943..8320)
                     /gene="sdhC"
                     /locus_tag="ACFOCA_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HFC6987222.1"
                     /translation="MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYF
                     LSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTA
                     RNTAKAVFASALVLTVVLGALLW"
     gene            complement(8599..10002)
                     /locus_tag="ACFOCA_000456"
     CDS             complement(8599..10002)
                     /locus_tag="ACFOCA_000456"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6987223.1"
                     /translation="MKKIQADVVVIGGGTAGMGAFRNARLHSDNVYLIENNVFGTTCA
                     RVGCMPSKLLIAAAEARHHALHTDPFGVHLDKDSIVVNGEEVMQRVKSERDRFVGFVV
                     ADVEEWPADKRIMGSAKFIDEHTVQIDEHTQITAKSFVIATGSRPVILPQWQSLGNRL
                     IINDDVFSWDTLPKRVAVFGPGVIGLELGQALHRLGVKVEIFGLGGIIGGISDPVVSD
                     EAKAVFGEELKLHLDAKTEVKLDADGNVEVHWEQDGEKGVFVAEYMLAAVGRRPNVDN
                     IGLENINIEKDARGVPVADPLTMQTSIPHIFIAGDASNQLPLLHEAADQGKIAGDNAG
                     RYPNIGGGLRRSTIGVVFTSPQIGFVGLKYAQVAAQYQADEFVIGEVSFKNQGRSRVM
                     LVNKGHMRLYAEKATGRFIGAEIVGPAAEHLAHLLAWAHQMKMTVPQMLDMPFYHPVI
                     EEGLRTALRDADAKLKA"
     gene            complement(10251..10988)
                     /locus_tag="ACFOCA_000457"
     CDS             complement(10251..10988)
                     /locus_tag="ACFOCA_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HFC6987224.1"
                     /translation="MALQDRTGQKVPSVVFRTRVGDTWKDVSTDDLFKGKKVVVFSLP
                     GAFTPTCSSSHLPRYNELFGAFKENGVDAIYCVSVNDTFVMNAWAAEEESDNIYMIPD
                     GNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVNDGVVEKMFIEPEEPGDPFKVSDADTM
                     LKFVAPDWKAQESVAIFTKPGCQFCAKAKQALQDKGLSYEEIVLGKDATVTSVRAITG
                     KMTAPQVFIGGKYIGGSEDLEAYLAKN"
     gene            complement(11267..13543)
                     /gene="metE"
                     /locus_tag="ACFOCA_000458"
     CDS             complement(11267..13543)
                     /gene="metE"
                     /locus_tag="ACFOCA_000458"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFC6987225.1"
                     /translation="MTTLHFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLRE
                     KNWKHQAAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN
                     KDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAKHYVQQLQEAQALGLKAKPTVVGPL
                     TFLWVGKEKGTVEFNRLSLLQKLLPVYVEILNALVEAGAEWIQIDEPALTVDLPKEWV
                     EAYKDVYATLSKVSAKILLSTYFGSVAEHAALLKSLPVDGLHIDLVRAPEQLDAFADY
                     DKVLSAGIIDGRNIWRANLNKVLETVEPLQAKLGDRLWISSSCSLLHTPFDLSVEEKL
                     KANKPDLYSWLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRA
                     DVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFK
                     KGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQY
                     GWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFV
                     RNDIPRSTVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAG
                     ESFRLSSAGCEDSTQIHTHMCYSEFNDILPAIAAMDADVITIETSRSDMELLTAFGEF
                     KYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETLE
                     QLQVMMNVTHKLRAELAK"
     gene            complement(13681..14559)
                     /gene="metF"
                     /locus_tag="ACFOCA_000459"
     CDS             complement(13681..14559)
                     /gene="metF"
                     /locus_tag="ACFOCA_000459"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HFC6987226.1"
                     /translation="MNYAKEINALNNSLSDLKGDINVSFEFFPPKNEQMETMLWDSIH
                     RLQTLHPKFVSVTYGANSGERDRTHGIVKRIKQETGLEAAPHLTGIDASPDELRQIAK
                     DYWDSGIRRIVALRGDELPGYEKKPFYAEDLVKLLRSVADFDISVAAYPEVHPEAKSA
                     QADLINLKRKIDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQL
                     GKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN
                     RSELTYAICHILGVRP"
     gene            14759..15034
                     /locus_tag="ACFOCA_000460"
     CDS             14759..15034
                     /locus_tag="ACFOCA_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HFC6987227.1"
                     /translation="MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKE
                     YPLFSLDTSSASHPVYTGKQRNVNTEGRASKFNQRFQSVMSSFRKDK"
     gene            15034..15159
                     /gene="ykgO"
                     /locus_tag="ACFOCA_000461"
     CDS             15034..15159
                     /gene="ykgO"
                     /locus_tag="ACFOCA_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HFC6987228.1"
                     /translation="MQVLSSLKTAKQRHRDCQIVRRRGKVYVICKSNPRFKARQR"
     gene            complement(15265..15465)
                     /locus_tag="ACFOCA_000462"
     CDS             complement(15265..15465)
                     /locus_tag="ACFOCA_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987229.1"
                     /translation="MIGRLFRIFFFFALAALIMNRLFSRRQKRALREVAEISARVLLG
                     AAAATLFWYLFMLYFKHIPDSY"
     gene            15608..16747
                     /locus_tag="ACFOCA_000463"
     CDS             15608..16747
                     /locus_tag="ACFOCA_000463"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HFC6987230.1"
                     /translation="MSQNASVGIVTPQKIPFEMPLVLENGKTLPRFDLMIETYGELNA
                     EKNNAVLICHALSGNHHVAGRHSAEDKYTGWWDNMVGPGKPIDTERFFVVGLNNLGGC
                     DGSSGPLSINPETGREYGADFPVVTVKDWVKSQAALADYLGIGQWAAVVGGSLGGMQA
                     LQWAISYPERVRHALVIASAPKLSTQNIAFNDVARQAILTDPDFNEGHYRSHNTVPAR
                     GLRIARMMGHITYLAEDGLGKKFGRDLRSNGYQYGYGVEFEVESYLRYQGDKFVGRFD
                     ANTYLLMTKALDYFDPAADFGNSLTRAVQDVQAKFFVASFSTDWRFAPERSHELVKAL
                     IAAQKSVQYIEVKSAHGHDAFLMEDEAYMRAVAAYMNNVYKECQQ"
     gene            16744..17325
                     /gene="metW"
                     /locus_tag="ACFOCA_000464"
     CDS             16744..17325
                     /gene="metW"
                     /locus_tag="ACFOCA_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HFC6987231.1"
                     /translation="MNLRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYG
                     IEIDTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLM
                     RVAKQAIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAK
                     NNIRVLERAVMTGNRQVKHFPNLLGSLAFYRVG"
     gene            17442..18287
                     /locus_tag="ACFOCA_000465"
     CDS             17442..18287
                     /locus_tag="ACFOCA_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NMB0938 family lipoprotein"
                     /protein_id="HFC6987232.1"
                     /translation="MKNKTSSLLLWLAAMMLTACSPSKEDKTKENGASAASSTASAAS
                     SSAPQTDLQPAASAPDNVKQAESVPPSNCTDLHPATGIDDLMQQIAEHIDSDCLFALS
                     HHELETRFGLPGGGYDNIQRLLFPDIRPEDPDYHQKIILAIEDLRYGKRTISRQAQDA
                     LMEQERRLREATLLLIQGSQETRGQGEEPKRTRYFEVSATPAYSSRHNNGLGGNFQYI
                     GQLPGYLKIHGEMLENQSLFRLSNRERNPDKPFLDIHFDENGKITRIVVYEKNIYFNP
                     NLGRR"
     gene            complement(18337..18897)
                     /gene="efp"
                     /locus_tag="ACFOCA_000466"
     CDS             complement(18337..18897)
                     /gene="efp"
                     /locus_tag="ACFOCA_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFC6987233.1"
                     /translation="MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNL
                     LTGAASETIYKADDKFDVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALK
                     FIVDGMEDQCEVTFYEGNPISVELPTIIVREVEYTEPAVKGDTSGKVMKTARLVGGTE
                     IQVMSYIENGDKIEIDTRTGEFRKRA"
     gene            complement(18940..20088)
                     /gene="earP"
                     /locus_tag="ACFOCA_000467"
     CDS             complement(18940..20088)
                     /gene="earP"
                     /locus_tag="ACFOCA_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HFC6987234.1"
                     /translation="MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTD
                     DVSALRALCPDLPDVPCVHQDIHVRTWHSDAADIDTALVPDIVIETFACDLPENVLHI
                     IRRHKPLWLNWEYLSAEESNERLHLMPSLQESVQKYFWFMGFSEKSGGLIRERDYRNA
                     VRFDTEALRERLMLPEKNAPEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDS
                     LKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDKLLHLADCAVIRGEDSFVRA
                     QLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYSPETASVHRRLSDDLNGGEALSAT
                     QRLECWQILQQHQNGWRQGAEDWSRYLFGQPSASEKLAAFVSKHQKIR"
     gene            complement(20107..20385)
                     /locus_tag="ACFOCA_000468"
     CDS             complement(20107..20385)
                     /locus_tag="ACFOCA_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987235.1"
                     /translation="MSRNLLVRWLAVCLIPLATLAVFAANPPEDKLQHLINGIILACE
                     ATFLFKFVLFDTIKHHLKQEFDLKRQTMLLFIPIILLIVYLFHYFGAF"
BASE COUNT         5119 a         5227 c         5172 g         5099 t
ORIGIN      
        1 ggtatcgata cgtgccaaaa cttggtcggc aacaacggtt tcaccgtctt gcgctacgat
       61 ttcaaccaat acgccggctt gtggagaagg tacttccaaa accactttgt ccgtttcgat
      121 atcgatcagg atttcgtcac gggcaactgc ttcgccaact tttttcttcc attccaagag
      181 cgtgccttca gatacgcttt cagacagcat aggtactttt acatcaataa tcattttgtg
      241 tctccaatgg ccctttcaga cggcctgttg tgtgtttttc attctgcata tgggtgttcc
      301 gcctgagcag cctcagacgg aatgctactt ggcttacaat gccaaagcgt cttcaaccaa
      361 ttgtttcaat tgagcaatgt gtttgcttga gtagcccact gcaggcgatg cgctgcttgg
      421 acgaccggca taagacagtt tttgctcttc gctgataacg tcttcgatgc ggtggcggat
      481 ttggtagaac gcgccttggt ttttcggctc ttcttgtgcc caaaccacag attttgcgtt
      541 cggatatttc gccagttcgg ctttaacctc gtcgtatggg aacggataca gctgctcaac
      601 gcggacaata gcgacatcat cttccagttt acgttcggct cgaccggctt ccaagtcata
      661 gtaaacctga ccggcacaca atgccacgcg tttcacgctg tcgttgcttg cgcgttcggc
      721 ggtatcgccg ataaccggac ggaaagtcga accttcggtg aagttttcca gcgggctcat
      781 tgcccctttg aatcgcaaca ggcgtttgga catgaaaatc actagcggtt tgcggtatga
      841 acctaagact tgacgttgca agaggtggaa catttgcgac gcttcagacg gcatgatgac
      901 ttgcatattg ttctcagaac acagttgcaa ccaacgttct acgcgtgcag aagagtgctc
      961 gggaccttga ccgtcgtagc cgtgcggaag gatggtggtc agaccgcaca aacgacccca
     1021 tttggtttcg cctgaagaca ggaattggtc aatagtcact tgcgcgccgt tggcgaagtc
     1081 accaaattga gcttcccaaa tggtcagctt gtcaggcgcg gagcaggcaa agccgtactc
     1141 gaacgccatc acggcttctt cgttcaaaat ggagtcgata accaagaact cgcccatacc
     1201 ttcgcccata tggcgcagag gaacataagt accgtcatcc catttttcac gtttttgatc
     1261 gtgcaatact gcatgacggt gtgagaatgt accgcgcccg gagtcctcac cggagatacg
     1321 cacgccatga cctttggtta cgaggctggc gtatgccaag gtttcggcca taccccaatc
     1381 tatggcctgt ttgccggatg ccatggcttt acgcgcttca atcacacgtt ttgcagtcgg
     1441 atgcagggca aagccttccg gtacggcggt aaacttctca gtgagacgct caatatctgc
     1501 ggcaggcaaa ccggtttcga tgtgttcgcg ccaatctttg ccttggtatt tgctccagtc
     1561 gatttgcgtg cgttgaaagt tgctcaacgt tgtttgctcg acgtgttcgc ctttgtccaa
     1621 agcatcacgg taggcttgga tgtaaccgtc tgcctcggct tgggttacca cgccttcggc
     1681 aatcagttgc tcggtgtaca aagcacgcgc accggggtgt tgcgatactt ttttgtacat
     1741 catcggttgg gtcaaggtcg gatcatcgcc ctcgttgtga ccccatttac ggtagcagac
     1801 aacgtcaatc acgatgtctt tatggaattt tttgcggtaa tccaaagcgg cttggatggc
     1861 aaagcaaaca cgctcaggat catcgccgtt cacatggata accggagcgg aaaccatttt
     1921 tgcgatatcg gtacagtgta cggttgaacg ggtatcgcgg atatcggaag tggtaaagcc
     1981 gatttgattg ttgatgacga tatgaaccgt accgccggtg gtataaccgc gcgttttaga
     2041 caggttgaat gtcgcttggt tgacacccaa accgataaat gcggagtcgc cgtgaatcaa
     2101 tacgggcaag actttatcgc ggccgttttc gcccaaacgt ttttgcttgg cgcgtgcaga
     2161 accttccact accggattga cgatttccaa gtgtgacggg ttgaacgcca aagaaacgtg
     2221 catcggacca tgtggagtgg cgatgtcgga gctgaagccc atgtggtatt tcacgtcgcc
     2281 gctaggcaat ttgatttcgg cacggccttc aaactcagcg aacaaatctc cgggtttttt
     2341 acccaaaatg ttcaccaaaa cattcagacg gccacggtgc gccataccga tgatgacttc
     2401 ttccacgccg tctttaccgg cgttttgaat caggtagttc aaaccggcaa tcgcgctttc
     2461 gccgccttcg acaccgaaac gtttctgacc gacatatttg gtatgcagat aacgttccaa
     2521 agtctcggca gcagtcatct ctttcaagat acggcgtttt tgatcggcat tgtaatgcgg
     2581 tgtggacaat acgctttcaa aataattgcg tacccagcgg cgctcttcgg tattgggaat
     2641 atagatatat tccaatgcga tgtggccgca gtaggtttgt ttgaggttgc tgatgatttg
     2701 ggacaaaggc agtttgccgc gattggcaaa atcgccctcg cccatattga attgaagcgc
     2761 catatcggca tcagacagac cgtggaattt cggatcgagg gcttcaatat cgcgcggggg
     2821 gatacgtttg agcggatcaa gttgggctgc acccacgcct tggatacgat aggcagaaat
     2881 cagccgtaaa acgctgactt gcttcttcag cattgcctca tccgcaccgc ccgcaacggc
     2941 agatgcaatt ttctttttcg ccaaagtaac aaatgattcg cgaatcggtg tgtgtgcgac
     3001 atcgacagca accgtccccg gctgtttgct caaatcggtg aaatactgct tccatttttc
     3061 atcaaccgca tcggggtttt ccaaaaaagc ctcgtacaat tcctcaatgt agggtgcgtt
     3121 cgaaccgaac aggtaagaga aattgagttt ttcgtccatc atggcgtgcg ctcttttctt
     3181 taaaatataa acaaagggta gaagtccgcg tcctgacggc tgaactgatg ccgtctgaaa
     3241 agacatttta ttctacccta ttttaaaccg gattgcctgt attgatttca tccgactaca
     3301 atcaaatgta tacagaaagc aatccgattc tctaatattg cctgtttgac aatatattaa
     3361 tgtatgttac ctctctcctg ccggcacata atcgcggcgt tccgaaccgg tataaagctg
     3421 gcgcgggcgg ccgattttca gcgaaggatc gctgatcatc tcgtgccagt gcgaaatcca
     3481 gcccacgctg cgcgacaggg cgaagatgac ggtaaacatt tcggtcggga tgcccagcgc
     3541 ggacaggacg atgccggaat agaaatcgac gtttggatac agcttgcgtt cgataaagaa
     3601 cgggtctttc agcgcaatct gttccaattc catcgccagt ttgaatttcg gactgtcttc
     3661 caagcccaat tccttcaaaa cttcatagca ggtttcgcgc ataatgctgg cacgcggatc
     3721 catattgcgg tacacgcggt gaccgaagcc catcagacgg tatttgcgtt gtttcacacc
     3781 ttccatgtat gcggcaacat tagacacatc gccgatttcg tccaacattt tcaacacggc
     3841 ttcgttcgca ccgccgtgcg aagcacccca caggcaggcg ataccggcag caatacaggc
     3901 aaacgggttc gcacccgaag accctgccag acggacggtt gaagttgagg cgttttgctc
     3961 gtggtcggca tgcaaaataa agatgcggtc gagcgcgcgt gccaaaacgg gattgggttt
     4021 gtagtcttca cacggcgtgg cgaacatcat atgaaggaag ttttcggaat aagaaagatt
     4081 attcttcgga taattgaacg gcagaccgtt tgaatagcgg tagcacattg ccgcaatggt
     4141 cgggattttg gaaatcaggc ggtaaatcgc gattttgcgg tgttcgggat tgctaatgtc
     4201 caagctgtct tggtagaacg cagacagcgc accgaccacg ccgaccatca tcgccatcgg
     4261 atgcgcgtcg cggcggaacc cccggaagaa ccaagtcagc tgttcatgca ccatcgtgtg
     4321 gcggcggacg gtattgtcaa attctgcctt ttgctcggga gtcggcagtt cgccgtaaat
     4381 caacaggtag cagacttcca aataatcgga cttttcggcc agctgctcga tggggtatcc
     4441 gcgataataa agcaagcctt gatcgccgtc gatgtaagta attttagact cacagcttgc
     4501 ggttgaaaca aatccggggt cgaaagaaaa caaacctgta ttttttgtca gcccccgaat
     4561 gtcaaccaca tcgtgcccga tgctggcttc caataccggc agctccaaac ctgcctgacc
     4621 cggtacgttg agtttgattg atttggacat attattgctc ctttgcaagt tataacccac
     4681 gttactgcat ccgcagcacg ttctttgcct tcagacggct tttgcatttt gaaatctgcc
     4741 tgcaggcaga tttcagatgc ctcatgcccg tctgattttt tcaagcatcg ggataaggtg
     4801 ccctttgtcc gtttccgaat gcccgttaat caaggcaagc aattcttgat cttgaaattc
     4861 aaggatttcg gaaaactcgg acagctcttt atcgctcaaa tgctcgaatt ctttttccat
     4921 aaacctgccg aagattaaat ctaattccaa caatccccgg cgggtttgaa aacggatttt
     4981 ccgtttggca atatcgtcaa aaaccatcat ttcttaaacg acccgtttca acataatctc
     5041 tttaatctta ccgatggctc gggtcggatt caagtgttta ggacatacgt ctacgcagtt
     5101 cataatggtg tggcaacgga acaaacggta tgggtcgttc agattatcca aacgctcatt
     5161 agtgatggta tcacggctgt ccgcaatgaa acggtaagca ttcagcaaac cggacggacc
     5221 aacgaattta tcagggttcc accaaaatga cgggcaggca gtcgaacagc aggcgcacaa
     5281 aatacactcg tacaaaccgt ccaactcttt acgctcttcc tgagtttgca gacgctcttt
     5341 gtccgcatca atcggattat cgttgacaac ataaggtttg acggaatggt attgtttgaa
     5401 gaactgggtc atatccacaa tcaggtcgcg gataacaggc agacctggca gaggacggat
     5461 tttaaccggc tgtttcaagc cacgcagatc ggtcaaacac gccaagccgt ttttgccgtt
     5521 gatgttcata ccgtccgatc cgcaaatgcc ttcgcggcag gagcggcgga aagacaaggt
     5581 atcgtcttgt gctttcaggc gtaccaaagc atccaaaagt ttcacgtcgg tcggttccaa
     5641 ttccaactcg taacgctgca tataaggctt ggcatcaaca tccgggttgt aacggtaaat
     5701 ttcaaaactc attttttcca tgagaagtgt tccttttctc atcaactgcc caatgatttt
     5761 gtattataaa ttcaagcagt tcaatgtggg tatggttaga tttcagacga gcttatgagg
     5821 cgaagaccgt ctgaaaacgc atcaataaac gcgcttggcc ggtttgatgt attccacgct
     5881 caaaggcttg gtatgtaccg gtttgtaaga caaagtattg gtatctgaat ggtacagcgt
     5941 atgtttcatc cagttttcat catcgcgctc aggatggtcg tctgaagcgt gcgcaccgcg
     6001 tgattcttta cgtgcttcgg cagacaccaa agtcgctttc gccacttcaa ttaggttatc
     6061 caattccaaa gcctcgatac gcgcggtatt ccacactttg ctcttgtctt tgatttcggt
     6121 acgtttcaca cgctcggcaa tcgccatgac ttctcgaacg cctttgctca gaatctcatc
     6181 agtacggaac acgccggcgt gcaattgtac ggagcgttgc agttcgcggc gcaatgcatc
     6241 aacgttttca ccatcggttt ggctgtccaa acgctcgata cgttggcggg tcaactcacc
     6301 agcattagca ggcaaaggtt tccagtcgct ttgctctttg atgaatttaa tcatgctgtc
     6361 gccggcagct ttaccgaata ccaccaagtc caacagggag ttggtaccca agcggttcgc
     6421 accgtgtacg gaagcacaag cgcactcacc tgccgcatac agacctttta caggcacttc
     6481 gtattcgtcg ccttgaggaa cgacaacttc gccatggtag ttggtcggaa taccgcccat
     6541 catatagtgg gtagtcggca caacgggaat cgggtcttta atcggatcga taccggcgaa
     6601 ctgaatggaa atctcgcgga tgcccggcag tttttccata attttttctg cgccgatatg
     6661 gtcgattttc agtaagacat ggtctttgtt tttaccgcag ccgcgacctt cgtagatttc
     6721 catcgccatc gcgcgggaaa caacgtcgcg agaagccaag tcttttacgg tcggcgcata
     6781 gcgttccata aagcgttcgc cgtcggcatt caacagaata ccgccctcgc cgcgtacgcc
     6841 ttcggtaatc aacacgcccg cacctgccac gccggtcggg tggaattgcc agaattccat
     6901 atcttccaac ggaatacccg cacgcgcgca aatgcccaaa ccatcgccgg tattcatata
     6961 ggcattggta gaagaagcat aaatacgacc gccaccgccg gtagcaaaca tcacagcttt
     7021 agcgtggaaa atataaactt cgccggtttc catttccatg gcggttacgc cgacgacatc
     7081 gccgttttca tcacgaatca aatcttgtgc cgtccattcc acaaagaatt gcgtattggc
     7141 acggacgttt tgttggtaca aagtatgcag catcgcatga cctgtacggt cggcaaccgc
     7201 acaggcgcgt tctaccgcgc gtttaccgtg ttcggcagta tggccgccga aaggacgctg
     7261 ataaatttta ccgctttcca cacggtcaaa aggcataccc atgtgttcca actcaattac
     7321 ggcttcaggc gcggcgcggc acataaactc aatcgcatct tggtcgccca accagtcgga
     7381 acctttcacg gtatcgtaca tgtgccagtc ccaacggtct tcctgcacat tacccagaga
     7441 ggcggaaata ccgccctgcg ccgctacggt atgcgaacgg gtcgggaaca ctttagacaa
     7501 aacggcacaa ttcagaccgg atttggataa ttggagggct gcgcgtaaac ctgcaccacc
     7561 accgccgaca atcacggcat caaacttgcg aacaggaaaa cccatactta cccccaaatt
     7621 actttaattg aatacaccaa gcagccgacc agccagacga tggtggcaac ctgcaaaaac
     7681 aaacgcacgc cgaagggttt gatatagtcc atccacaaat cgcggatacc cacccaagcg
     7741 tgcaagaata cggcgatgaa gctcacttgg gtaaatactt ttacccaagt ttgactaaaa
     7801 aatgcctgcc atgccgaata ttctttaggc agggaaaata gaaccactaa aagtgcaacg
     7861 gtataaatca acataataac cgcagtcgca cgttgcatcg cccaatcgcg caaaccgtaa
     7921 tgggcaccgg tcaatttacg ttctaccata acaacgctcc caaaacgaca gtcaaaacca
     7981 atgcagaagc aaatacggct ttagcggtat tgcgcgcagt attcagctca aggcctttgt
     8041 gcgcatccaa aaataaaaag cggataccgg cgagagaatg gtgcagataa gcccacaata
     8101 caccgattaa aaccagcttg accaaaggat gggaaacaat ggcacggtaa gtttcaaatg
     8161 cagactcttg actcagggta ccggacagga aatacagcag gaaaggcagc ataataaaca
     8221 gcccgacccc gctgatgcgg tgaaggatgg aaactatccc gggtatcggc agacggatgt
     8281 tcggcaaatc cagataaaca ggacgcggtt tggcagacat agtcaattcc tctgtagtta
     8341 tatatcgact caaaaaccgt aaacccattg ctacactggg ttacataaac gttaatttac
     8401 ctgttttatc ccattttgaa cagtgtattt taaaaacaaa ctgatagatt ttgacaaaca
     8461 cgcgtggaaa cagcagatta aaagaaagat ttttagtttt gccgccccct tcccgacacg
     8521 gtatcagcat ccgaccccat ccccaaaaac aaaatgccgt ctgaaaaaat ttcagacggc
     8581 attgttttgc catatcggtc aggctttcaa tttcgcatcg gcatcgcgca acgcggtacg
     8641 cagaccttcc tcgataacgg gatggtagaa cggcatatcc agcatttgcg gaacggtcat
     8701 cttcatttga tgcgcccatg ccagcaagtg cgccaaatgt tcggcggcag ggcctacgat
     8761 ttccgcgccg ataaagcggc cggtggcttt ttcggcatac aggcgcatat ggcctttgtt
     8821 caccagcatc acgcggctgc ggccttggtt tttgaacgat acttcgccga tgacaaattc
     8881 gtcggcttgg tattgcgcgg caacctgcgc gtatttcaga ccgacaaagc cgatttgcgg
     8941 actggtaaac accacgccga tggtgctgcg ccgcaaaccg ccgccgatat tcgggtagcg
     9001 gcccgcgtta tcgccggcaa tcttgccttg gtcggcagct tcatgcagca gaggcagttg
     9061 gttggacgcg tcgcccgcaa taaagatatg cggaatgctg gtctgcatgg tcagtgggtc
     9121 ggcaacgggt acgccgcgcg cgtctttttc gatattgatg ttttccaaac cgatattgtc
     9181 aacgttcgga cggcggccca cggctgccag catatattcg gcaacaaata cgcctttttc
     9241 gccgtcctgc tcccaatgga cttctacatt gccgtctgca tctagtttga cctcggtttt
     9301 agcatccaga tgcagtttca attcttcgcc gaacacggct ttcgcctcgt ctgaaacgac
     9361 ggggtcggaa atgccgccga tgattccgcc caaaccgaaa atttcaactt tcacgcccaa
     9421 acggtgcaat gcctgaccca gttccaaacc gataacaccc ggcccgaaca cggcaacgcg
     9481 cttaggcagc gtatcccatg agaaaacgtc atcgttgata atcaaacgat tgcccaaaga
     9541 ctgccattgc ggcaggatga cgggacgcga accggtagca atcacgaaac tttttgccgt
     9601 aatttgagta tgctcgtcga tttggacggt atgctcgtcg ataaatttag ccgaacccat
     9661 gatgcgcttg tcggcaggcc actcttccac atcggcaacg acaaagccga caaaacggtc
     9721 acgctcggat ttaacgcgct gcatgacctc ttcaccgttg acgacgatgc tgtctttgtc
     9781 caaatgcacg ccgaacgggt cggtatgcaa tgcgtggtgg cgcgcttctg cggcggcaat
     9841 caagagtttg gaaggcatac aacccacgcg cgcgcaggtt gtgccgaaca cattgttttc
     9901 aatcaggtaa acattatccg aatgtaaacg ggcattgcga aacgcaccca taccggcagt
     9961 accgccgccg attacgacga catccgcttg aatttttttc ataatctttg tccttccgtt
    10021 ttcgtctgaa acattgccga cacagaacat atcggtttca gacggcattt aaatattttc
    10081 ccaatcaaaa acatcattca gataaataaa aacaaaattt cgattgagtg caacaatatc
    10141 caaattctct tataaatata gagttattcg gatcggcagt gtagaaccgc ccgaataact
    10201 ctatccggta tatcagacag tttaatcaaa ccgccttaag caaacagcta tcagttttta
    10261 gccaagtaag cttccaaatc ttcgctgccg ccgatgtatt tgccgccgat gaagacttga
    10321 ggggcagtca tcttgccggt aatggcgcga acggaagtaa cggttgcatc tttgcccaat
    10381 acgatttctt cgtaagacaa acctttgtct tgcaaagctt gtttggcttt ggcgcagaat
    10441 tggcaacctg gtttagtgaa aattgccaca gactcttgag ctttccaatc aggagcaacg
    10501 aatttcagca tagtatctgc atcggatact ttgaacggat cgcctggttc ttcaggctcg
    10561 atgaacattt tttcaaccac gccgtcgtta accagcatgg agtaacgcca agagcgttta
    10621 ccgaagccca agtcttcttt accgaccagc atacccatac cttcggtaaa ttcgccgttg
    10681 ccatcaggaa tcatgtagat gttgtcggat tcttcttcgg cagcccaagc gttcattacg
    10741 aacgtatcgt ttacagatac gcagtagatt gcgtcaacgc cgttttcttt gaacgcgccg
    10801 aacaattcgt tgtaacgcgg caggtgtgaa gaagaacaag tcggggtaaa tgcaccgggc
    10861 agggagaata cgactacttt tttgcctttg aacaaatcat cggtagacac atctttccaa
    10921 gtgtcgccga cgcgggtgcg gaatactacg gaaggtactt tttgaccggt acgatcttgc
    10981 aaagccattt taagctcctt aatagattgg tttgagaaat aattgtgaat cgctgggcat
    11041 tctaccccat gcaaaatgat ttgtataatt tatagttcaa ataatataaa ttatttaaaa
    11101 ctatcaaaca caactccgat ttgcctgttt cccacatata aagccgaatt agaaaaaaac
    11161 aagctgcaat gaaaagattt tccggcaact gcgcccttgc gccgcaaatc aggacaaaat
    11221 accgtctgaa aggctttcag acggtattta ttcatacggt ctcggcttat ttcgccaatt
    11281 cggcacgcaa tttgtgggtt acgttcatca tcacttggag ttgttccaga gtttctttcc
    11341 agccgcgtgt tttcaggccg cagtccgggt taacccacag acgttcaacc ggtacaacct
    11401 cgatggcttt gcgcaacagg tgctccactt cggcttctgt cggtacgcgc gggctgtgga
    11461 tgtcgtaaac ccccgggccg atgtcgttcg ggtatttgaa ttcgccgaac gcggtcaaga
    11521 gttccatgtc ggaacgtgaa gtctcgatgg tgatcacgtc cgcatccatt gcagcaatcg
    11581 caggcaggat atcgttgaac tcggagtagc acatatgagt gtggatttgt gtgctgtctt
    11641 cgcaaccggc agaggacagg cggaaggatt cgcccgccca gttcaggtag gcatcccaat
    11701 cggcgcgttt cagcggcaag ccttcgcgga tggcaggttc gtcaatttgg atgactttga
    11761 tgcctgcttt ttccagatcc aatacttcgt cgttcagagc cagtgcgatt tgtttgcaca
    11821 cggtagagcg aggaatatcg ttgcggacga aagaccattg cagaatggtt acagggccgg
    11881 tcaacatacc tttcatcgga cgtttggtca ggctttgagc gtaagtagac caagcgacag
    11941 tcatggcttc aggacggctt acgtcaccga agataatcgg tggtttaaca caacgtgagc
    12001 cgtagctttg tacccagccg tattgggtga atgcaaaacc gctcaacaat tcgccgaagt
    12061 attcgaccat gtcgttacgc tcggcttcgc cgtgtaccag tacgtccaaa tccagttttt
    12121 cttgttcttc aaccaccaag gcgatttctt ttttcatcgc ggcttcgtaa tcggcggcag
    12181 acagttcgcc ttttttgaag gctgcgcgtg cttggcggat ttcggtagtt tgcgggaaag
    12241 aaccgatgtt ggtcgtcggc agcagaggca ggttcaacca tgcttgttgc gctttgatac
    12301 ggtcggcaaa tggagatttg cgttggtctg cgttggcagg caaatcggcc aggcgtttgg
    12361 caacgtctgc acggtggatt tcgctgctgt tggcgcgtga atcggcagca gcttggctgg
    12421 cggccagttc ttcggcaacg gaatcgcgac cttcgttcaa tgcggctttc agaacgcgca
    12481 attcttgggt tttttgcagg gtaaatgcca accaagagta caggtccggt ttgttggctt
    12541 tcagtttttc ttcaactgac aagtcaaatg gagtgtgcag cagagagcaa gagctggaaa
    12601 tccacaaacg gtcgcccagt ttggcttgca gaggctcaac agtttccaaa actttgttca
    12661 ggttggcgcg ccagatgttg cggccgtcga tgatgcctgc agacagaact ttgtcgtagt
    12721 cggcaaatgc gtccagttgc tcgggagcgc gtaccaagtc gatgtgcagg ccgtcaacag
    12781 gcagggattt caacaatgcg gcgtgttcgg caacagaacc gaagtaagtg ctcagcagga
    12841 ttttggcact tactttgctc aaagtagcgt aaacgtcttt gtaggcttct acccattctt
    12901 taggcagatc gacagtcaaa gcaggctcgt cgatttgaat ccattctgca ccggcttcaa
    12961 ccaaagcgtt taggatttca acgtaaacag gcagcagttt ttgcaacagg ctcaggcggt
    13021 tgaattcgac tgtgcctttt tctttaccca cccacaggaa agtcaacgga cctacaacgg
    13081 tcggtttggc tttcagaccg agggcttggg cttcttgcag ttgttgaaca tagtgtttgg
    13141 cattggcttt gaattcggta tcggcgtgga attcaggcac caagtagtgg tagttggtgt
    13201 cgaaccattt ggtcatttcg atagcgaatt ggtctttgtt gccgcgcgcc agttggaaga
    13261 attgttccaa agacaggttt tggctgtcga aaccgaagcg ggcgggaatc gcgccggtgg
    13321 cgacttgcag gtcgaggatg tggtcgtaga aagtgaaatc gcctacggca acgaaatcgg
    13381 cgttggcagc ggcctggtgt ttccagtttt tctcgcgcaa gtctttagca acagccagca
    13441 attcttgctc gctgatttct ttgcgccagt atttttcttg tgcgaatttc aattcgcgga
    13501 aggcgccgac acgcgggaag cctgagaaat gtaatgttgt catgttgaac tctccagttg
    13561 gattttgtaa ggaccggttc gatccaaatc ggccggtatt gtaaatcaga atggctcgga
    13621 tggggcggtg ttttgctttt tagacacctt agatgccgtc tgaaactgtt tgatacggct
    13681 ttaagggcgc acgcctaaaa tatggcagat ggcgtaagtc agctcgctgc ggttaagcgt
    13741 atagaagtgg aaatctttca cgccttcgcg ggacaggact ttgaccatat cgatggcgat
    13801 acttgccgcc accagattgc gcgtaccttg gtcgtcgtcc aaaccttcat acatttgcga
    13861 cagccagctt gggattttga cgttggttac ttgcgccatt ttgccgagct gcttgaagtt
    13921 ggtaacaggc aaaataccgg ggacgatttc cacatcgata cccaacatca cgcagcggtc
    13981 gcggaagcgc aggtagcgtt ccacatcgaa gaagaattgg gtgatgacgt ggttcgcgcc
    14041 cgcatcgatt ttgcgtttca gattgatcaa gtcggcttga gcggatttgg cttccgggtg
    14101 tacctcagga taggccgcta cggaaatgtc gaagtcggca acggagcgca acagtttgac
    14161 caaatcttcg gcatagaaag gttttttctc gtagccgggc agctcgtcgc cgcgcagggc
    14221 gacaatgcgg cggatgccgc tgtcccaata gtctttggcg atttggcgca attcgtcggg
    14281 agaagcgtca ataccggtca ggtgcggggc ggcttccaag ccggtttcct gtttgatgcg
    14341 tttgacgatg ccgtgtgtgc ggtcgcgctc gcctgagttt gcaccgtaag ttacggaaac
    14401 aaatttcggg tgcaaggttt gcaggcgatg gatggaatcc cacagcatgg tttccatttg
    14461 ttcgtttttc ggcgggaaaa attcgaatga aacgttgatg tcgcctttca aatcggaaag
    14521 gctgttattt aacgcattga tttcttttgc gtaattcatg gctgcgtacc ttttattatc
    14581 ttttatatga tgtttcaggc aacataataa agttgcgcca aacatgagtc aatttcaaaa
    14641 ttttcagatt tatcatgaaa atttctaata tattacaaaa atagttaaat ttccttgtac
    14701 agcccttcta aactatgcta gagtttgtta tgttataaca ctgaaagcaa ggcaatatat
    14761 gaaaccgaat attcatcccg acaattaccg aaccgtcctt tttttcgata gcagcgccaa
    14821 tgaaggctgg ttaatccgct cctgtgccga aacacacgga aaaacgatgg tttggacaga
    14881 cggcaaagaa tatccgctgt tttcgctgga tacttcttcc gcatcccatc ccgtctatac
    14941 tggcaaacag cgcaacgtca acaccgaagg ccgtgccagc aaattcaacc aacgtttcca
    15001 atccgtaatg tcatcgttta gaaaggacaa ataatgcagg ttctgtcttc actcaaaacc
    15061 gccaaacaac gccaccgcga ctgccaaatc gtcaggcgca ggggcaaagt ttacgtcatc
    15121 tgcaaaagca atccgcgttt taaagcgcgc caacgctgac cccctgccct tcctgcttcg
    15181 gttgtaaatc ccctcctacc gcaagccctt ttcaaaaaat gccgtctgaa acagaaaaat
    15241 gcgtttcaga cggcattttt tccgtcaata cgaatccgga atgtgtttga aatacagcat
    15301 aaacagatac caaaacagcg tcgcggcggc cgcaccgagc agcacccggg cactgatttc
    15361 ggcaacttcg cgcagggcgc gtttctgcct gcggctgaag aggcggttca taatcagcgc
    15421 ggcaagtgcg aaaaagaaaa aaatacggaa aagtctgcct atcatgtcgg gaagcgaaaa
    15481 gtatggttcg ggcgcggcgg catggggaag gatgtttcag cgcgtcaggc tgcttgtccg
    15541 accgtgtcaa aaagtcatgc cgtttgcgat ataataacgc tttttgccgt atttgttgga
    15601 acaggatatg agtcaaaatg cctcggtggg cattgtaacg ccccaaaaaa ttccgtttga
    15661 aatgccgctg gttttggaaa acggtaaaac tttgccgcgt ttcgatctga tgattgaaac
    15721 ctacggcgag ctgaatgccg aaaaaaataa tgcggtttta atctgtcatg cgctgtcagg
    15781 caaccatcat gttgcgggca ggcattcggc ggaggataaa tatacgggct ggtgggacaa
    15841 tatggtagga cccggcaaac cgattgatac ggaacgtttt ttcgtggtcg gtttgaacaa
    15901 tctgggcggc tgtgacggca gcagcggacc tttgtcgatc aatcctgaaa cgggtaggga
    15961 atacggcgcg gattttccgg tggttacggt gaaggactgg gtaaaatcac aagccgcgct
    16021 tgccgactat ctcggcatcg ggcaatgggc ggcggttgtc ggcggcagtt tgggcggtat
    16081 gcaggctttg cagtgggcga tttcctatcc cgaacgcgtg cgccatgcct tagtgattgc
    16141 gtctgcgccg aaactgtcca cgcaaaatat cgcgttcaac gatgtggcgc gtcaggcgat
    16201 tttgaccgac cccgatttca acgaaggaca ttaccgcagc cataataccg ttcctgcacg
    16261 gggcttgcgg attgcccgca tgatggggca cattacctat cttgccgaag acggtttggg
    16321 caaaaaattc ggacgcgatt tgcgttccaa cggctatcaa tacggttatg gcgttgaatt
    16381 tgaagtagaa tcctatctgc gctatcaggg cgacaaattc gtcgggcggt ttgatgccaa
    16441 cacctatttg ctgatgacca aagctttgga ctatttcgat ccggcggcgg atttcggcaa
    16501 cagcctgacc cgcgccgtgc aggatgtgca ggcaaaattc tttgtcgcca gcttcagcac
    16561 cgattggcgt ttcgcgcccg aacgttcgca cgaactggtc aaggccctga ttgccgccca
    16621 aaaatccgtg cagtatatcg aagtcaaatc cgcacacggg cacgatgcct ttttaatgga
    16681 agacgaagcc tatatgcgtg cggtcgccgc ctatatgaac aacgtttata aggaatgtca
    16741 gcaatgaacc tgcgcgatga tttgcaactg atttacgacc ggatacccga aggcagccgc
    16801 gtcttggact tgggctgcgg cgacggcgaa ctgcttgccg cattggtcga acacaaaaaa
    16861 tgcagcggct acggcatcga aatcgacacc gacagcgtga ttgccgcgat gtcgcgcggc
    16921 gtgaatgtta tccaagccga tttggaagaa ggtttaaccg cattcaacga tcaaagtttt
    16981 gatgtgattg tgttgagcca aaccatccaa gcgatgcaga ataccgaaaa aatcctgcgc
    17041 tgcctgatgc gcgttgccaa acaggcgatt gtcagcttcc cgaatttcgg ctactggcgc
    17101 aaccgcgtcc aaatcgcact cggcggacat atgccggttt ccgaacgtat gccctaccat
    17161 tggtacgaca cgcccaatat ccattggtgc acgctcaaag actttgattt gttgtgcgcc
    17221 aaaaacaaca tccgcgtcct cgaacgcgcc gtgatgacgg gcaacagaca ggtcaaacat
    17281 ttccccaacc ttttgggcag ccttgcgttt taccgcgtcg gctaagacag gttgagaacc
    17341 ttgtcggcaa taacaggttc ttcggttcta ttaacaacag gccgtctgaa aaatgaaacg
    17401 gtaggttttc agacggcctc tttaatactg gaaacaatag aatgaaaaac aaaacctcat
    17461 cacttctctt atggcttgcc gcaatgatgc tgaccgcgtg ttccccgagc aaagaagata
    17521 aaacgaaaga aaacggcgca tccgccgcct cgtccacggc atccgccgct tcgtcttccg
    17581 cgccccaaac cgatttgcaa ccggccgcat ccgcccctga taacgtcaag caggcagaaa
    17641 gcgtgccgcc gtcaaattgc accgacctgc accccgccac cggcattgac gatctcatgc
    17701 agcaaatcgc cgaacacatt gactcggact gtctgtttgc cctttcccat cacgaactgg
    17761 aaacccgttt cggcttaccc ggcggcggct atgacaacat acagcggctg ctgtttcccg
    17821 acatccgccc tgaagatccc gactaccatc agaaaatcat actggcaatt gaagacttgc
    17881 gttacggaaa gcgcacgatc agccggcagg cacaagatgc cttgatggaa caggaacgcc
    17941 gcctccgaga agcgacgctg ttgctgatac agggcagtca agaaacccgc ggacaaggcg
    18001 aggagccgaa acgcacgcgt tattttgaag tttcggcaac ccctgcctat tcgagccggc
    18061 acaacaacgg acttggcggc aatttccaat acatcggcca attgcccggc tatctgaaaa
    18121 tacacggaga aatgcttgaa aaccaatcac tcttccggct gtccaaccgt gaacgcaatc
    18181 ccgacaaacc gtttttagac atccattttg acgaaaatgg caaaatcacg cgtattgtcg
    18241 tttacgaaaa aaacatctac ttcaatccaa acttggggcg aagataaaaa aatgccgtct
    18301 gaaacgtttt cagacggcat ttttcaatgc aacaaatcaa gcgcgtttgc ggaattcgcc
    18361 ggtgcgggta tcgatttcga ttttgtcgcc gttttcgatg taagacatca cttggatttc
    18421 ggtgccgccg accaggcgcg cggttttcat cactttgccg gaagtatcgc ctttgacggc
    18481 aggctcggta tactcgactt cgcgtacgat gatggtgggc agttctacgg agatggggtt
    18541 gccttcgtag aaggtaactt cgcattggtc ttccatgccg tcaacgatga atttcaacgc
    18601 gtcgccgatg ttgtcggctt cgatttcgta ttggttgaat tcttcgtcca taaagacgta
    18661 catcggatcg gcaaagtagc tgtacgtaca gtttttgcgg gacaggatga ccacgtcgaa
    18721 tttgtcgtcg gctttgtaaa tggtttcgga agccgcgccg gtcagcaggt ttttcagttt
    18781 catgctgact ttggcggaag agcggccgcc tttgatgtat tcggtttttt gaacgaccat
    18841 aggatcgttg ccgaccataa atacattgcc ggcgcgcagt tcttgtgctg ttttcattgt
    18901 gattttccaa tcaaatcggt tgtcgtaaaa cgcactattc tagcgtattt tttgatgctt
    18961 tgaaacaaag gcggcgagtt tttcggatgc ggaaggctgc ccgaaaagat aacggctcca
    19021 atcctccgcg ccttgccgcc agccgttttg atgttgttgc aggatttgcc aacattcgag
    19081 gcgttgcgtg gcggataaag cctctccgcc gttgaggtcg tctgaaaggc ggcggtgtac
    19141 cgatgcggtt tcgggcgagt aaaatccatg cgccttatcc caaaaggcgt ggagtttatc
    19201 gagatggaca ttctcgtctt gcgggtagat gtgccaaaag aagggtttgc cggcaagctg
    19261 ggcgcgcacg aaactgtctt cgccgcgtat cacggcgcag tcggcgaggt gcagcagttt
    19321 gtcgaagtcc tgttgcggca cgaaagggat tttgacgagg cggacggatg ccgtctgaaa
    19381 aacatcgccg tcgttttgca gggcatcttg cggaataacg ccgctttgtt tgaggctgtc
    19441 gatgatttgc gtccccgcca gcaacagtgt catcgggctg cctgcctgtc gccacatttc
    19501 cagccacttt gcccaaacat cgctccgata gccgaaaagc agccattcgg gggcgttttt
    19561 ttcgggaagc atcagccgct ctcgcaaggc ttcggtatcg aaacggacgg catttcggta
    19621 atcgcgttcg cgtatcaacc cgccgctttt ttcgctgaaa cccataaacc aaaaatattt
    19681 ttgaacactc tcctgcagcg aaggcatcag atgcagcctt tcattgcttt cttccgcgct
    19741 caaatattcc caattcagcc aaagcggctt gtgtcggcgg atgatgtgca gcacattttc
    19801 gggcaggtcg caggcaaaag tttcgataac gatatcggga acaagggcag tatcgatatc
    19861 cgccgcatcg gaatgccaag tgcggacatg aatatcctga tgaacgcagg gaacatcggg
    19921 caaatcaggg caaagcgcac gcaaggcgga cacatcgtcc gtccacaaat gcacctgcca
    19981 accgagttcg cggtgcaaaa cacgggcgag ccgccacgaa acgccgatgt cgccgaaatt
    20041 gtcgatgacc ttgcaaaaaa tccaacagac aaaaggagga gtattcatag aaataacgga
    20101 aacaagctaa aacgcgccga aatagtggaa caaatacaca atcagcaaaa taatcggaat
    20161 aaacagcaac atagtttgac gtttcaaatc aaactcttgt ttcaaatgat gcttgatggt
    20221 gtcgaaaagg acgaatttaa acaaaaacgt cgcttcgcag gcaaggatga tgccgttgat
    20281 cagatgctgg agtttgtctt cgggcggatt ggcggcgaaa acggcaagcg tcgccaacgg
    20341 gatgaggcag acggcaagcc aacggacaag caggtttcga gacattgcaa ggctttcaaa
    20401 aaaagcaaaa cgccattatc gccccaagcg cacgccttgt ctaacggacg caccggagat
    20461 gccgtctgaa gccttgccgc aggaaaacac cgcaccgccg aacctttaaa tacgcccgag
    20521 acgggcgttc cccgaaaaat cggacgctgc cgccgatgcc tgaggacaag gcggcagcag
    20581 gcacgggcat attgaaaacc cggcgcgtcg gtttgaa
//
LOCUS       DAXIFS010000016        20278 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.016, whole genome shotgun sequence.
ACCESSION   DAXIFS010000016 DAXIFS010000000
VERSION     DAXIFS010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20278
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.016"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..2044)
                     /gene="ligA"
                     /locus_tag="ACFOCA_000469"
     CDS             complement(<1..2044)
                     /gene="ligA"
                     /locus_tag="ACFOCA_000469"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFC6987236.1"
                     /translation="MNPNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEY
                     YTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVGGEPLAGFAEVRHEVPML
                     SLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL
                     VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQ
                     AENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYF
                     QALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFI
                     SRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQ
                     DEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDLFAEA
                     PAANQTQSVPLYKPYRLPTHCPICRSEIEREEGEAVARCSGGMLCQAQRAQGLIHFAS
                     RKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEG
                     SSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGT
                     LERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIP"
     gene            complement(2192..3478)
                     /locus_tag="ACFOCA_000470"
     CDS             complement(2192..3478)
                     /locus_tag="ACFOCA_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA C-terminal
                     FtsZ-binding domain-containing protein"
                     /protein_id="HFC6987237.1"
                     /translation="MIYIVLFLAVVLAVVAYNMYQENQYRKKVRDQFGHSDKDALLNS
                     KTSHVRDGKPSGGSVMMPKPQPAVKKTAKPQDPAMRNLQEQDAVYIAKQKQAKASPFK
                     TEIETALEESGIIGNSAHTVSEPQTGHSAPKPADAPAKPAPVPQTPAKPLITLKELSK
                     VELPWFDVRFDFISYIALTEAKELHALPRLSNRCRYQIVGCTMDDHFQIAEPIPGIRY
                     QAFIVGIQAVSRNGLASQEELSAFNRQVDAFAQSMGGQTLHTDLAAFIEVASALDAFC
                     ARVDQTIAIHLVSPTSISGVELRSAVTGVGFVLEDDGAFHYTDTSGSTMFSICSLNNE
                     PFTNALLDNQSYKGFSMLLDIPHSPAGEKTFDDLFMDLAVRLSGQLNLNLVNDKMEEV
                     STQWLKDVRTYVLARQSEMLKVGIEPGGKTALRLFS"
     gene            complement(3674..4246)
                     /gene="ampD"
                     /locus_tag="ACFOCA_000471"
     CDS             complement(3674..4246)
                     /gene="ampD"
                     /locus_tag="ACFOCA_000471"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HFC6987238.1"
                     /translation="MDNHAEAHWQNGWLQSIRHTPSPNFSPRETGETVSLIVLHNISL
                     PPFEYGTDAVERLFANRLDPNDHPFFGLIHTLRVSSHFLIKRDGKTVQFVSCDNMAYH
                     AGVSSFGGREKCNAFSIGIELEGCDFEPFAEAQYRSLEALLDAICRHYPVTAVTGHQD
                     IAPGRKTDPGHFFDWRRIREKGFLVDRNAV"
     gene            4330..5325
                     /gene="mltG"
                     /locus_tag="ACFOCA_000472"
     CDS             4330..5325
                     /gene="mltG"
                     /locus_tag="ACFOCA_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFC6987239.1"
                     /translation="MLRKLLKWSAVFLTVSAAVFAALLFVPKDNGRAYRIKIAKNQGI
                     SSVGRKLAEDRIVFSRHVLTAAAYVLGVHNRLHTGTYRLPSEVSAWDILQKMRGGRPD
                     SVTVQIIEGSRFSHMRKVIDATPDIEHDTKGWSNEKLMAEVAPDAFSGNPEGQFFPDS
                     YEIDAGGSDLRIYQTAYKAMQRRLNEAWESRQDGLPYKNPYEMLIMASLVEKETGHEA
                     DRDHVASVFVNRLKIGMRLQTDPSVIYGMGAAYKGKIRKADLRRDTPYNTYTRGGLPP
                     TPIALPGKAALDAAAHPSGEKYLYFVSKMDGTGLSQFSHDLTEHNAAVRKYILKK"
     gene            5385..6005
                     /gene="tmk"
                     /locus_tag="ACFOCA_000473"
     CDS             5385..6005
                     /gene="tmk"
                     /locus_tag="ACFOCA_000473"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFC6987240.1"
                     /translation="MKPQFITLDGIDGAGKSTNLAVIKAWFERRGLPVLFTREPGGTP
                     VGEALREILLNPETKAGLRAETLMMFAARMQHIEDVILPALSDGIHVVSDRFTDATFA
                     YQGGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMARIGQTREKDRFEQEQAD
                     FFMRVRSVYLNRAAACPERYAVIDSNLGLDEVRNSIEKVLDGHFGC"
     gene            6227..7507
                     /locus_tag="ACFOCA_000474"
     CDS             6227..7507
                     /locus_tag="ACFOCA_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFC6987241.1"
                     /translation="MENSLKEAALKFHELPVPGKISVTPTKSLATDKDLALAYSPGVA
                     APCMEIHADPQNAYKYTAKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKGVLFKKFA
                     GVDVFDIEIDEKDPQKLVDIIAALEPTFGGINLEDIKAPECFYIERELRKRCKIPVFH
                     DDQHGTAIITAAAVLNALRFTGRKIEEATLVCSGAGAAAIACLNQLLDLGLKRENVTV
                     CDSKGVIYKTREDKDRMDESKQFYAIEDNGQRVLADAVKGKDIFLGLSGANLLTPEML
                     NTMNEKPIVFAMANPNPEILPPLAKETRPDVVIGTGRSDFPNQVNNVLCFPFIFRGAL
                     DVGATTINEEMKRACVYALADLAMEEVTEEVVAAYGKKFEFGAEYLIPTPFDSRLLPR
                     VATAAAKAAMESGVATRPIADLEAYAAKLSEWKL"
     gene            7743..7946
                     /locus_tag="ACFOCA_000475"
     CDS             7743..7946
                     /locus_tag="ACFOCA_000475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987242.1"
                     /translation="MKEMKPVRYHIGDMPETSKQTASRHDDRAVGVDDDCFHDSFGQF
                     LFGCSAEATRTAPISVKRSCLFT"
     gene            8054..9088
                     /gene="lpxK"
                     /locus_tag="ACFOCA_000476"
     CDS             8054..9088
                     /gene="lpxK"
                     /locus_tag="ACFOCA_000476"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFC6987243.1"
                     /translation="MPNCFKFHTVIERHWQKPYPVLSFLLKPLSGLFAKIAAKRRTDF
                     LSGKRQSEKLPVPVVVVGNIHAGGTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKA
                     VHVLNAESRAEDAGDEPLLLFRKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGLQ
                     HYALRRDVEIAVFPSADTGRTDLDLLPNGSLREPLLRLDSVDAVVVSGGKADALFRPS
                     ENMFHSRIEAGRIYRLNNPSEILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKR
                     TVALPDHADISAADLPDADAVIITEKDAVKFSDGICTDNVWVLPVCAIIEPDLAAFVL
                     ERLEDVPKAV"
     gene            9294..9875
                     /locus_tag="ACFOCA_000477"
     CDS             9294..9875
                     /locus_tag="ACFOCA_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HFC6987244.1"
                     /translation="MKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEK
                     NMIEGFNAGFKPYADKALAEMPEAKKDQAAKAFNRYRENVLKDLITPEVKQAVRNTLL
                     KNAREIYTQEEIDGMIAFYGSPVGQSVVAKNPRLIKKSMSEIAVSWTALSGKIARHHL
                     PAFTEELRRIICGGKNPDAGCKQAGQVGKRHQK"
     gene            9944..10126
                     /locus_tag="ACFOCA_000478"
     CDS             9944..10126
                     /locus_tag="ACFOCA_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HFC6987245.1"
                     /translation="MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPY
                     MLENEARALSEEELKA"
     gene            10123..10884
                     /gene="kdsB"
                     /locus_tag="ACFOCA_000479"
     CDS             10123..10884
                     /gene="kdsB"
                     /locus_tag="ACFOCA_000479"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6987246.1"
                     /translation="MTEFVVLIPARLDSSRLPGKALADIHGKPMVVRVAEQAAKSKAV
                     RVVVATDHPDIQTACQAHGVEVVMTSNRHESGTTRLAEASAALKLPPHLVVVNVQGDE
                     PLIAPELIDRTAEVLVENNVQMATAAHELHDFDELMNPNAVKVVLDKNRNAIYFSRAP
                     IPYPRDAMRAGKREMPFETAVLRHIGIYAYRVGFLQRYTEMSVSSLETIESLEQLRVL
                     WHGYSIAVETAKEAPAAGVDTQEDLDRVRAVFQTV"
     gene            10907..11224
                     /locus_tag="ACFOCA_000480"
                     /pseudo
     CDS             10907..11224
                     /locus_tag="ACFOCA_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            11326..11526
                     /locus_tag="ACFOCA_000481"
                     /pseudo
     CDS             11326..11526
                     /locus_tag="ACFOCA_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            11683..11775
                     /locus_tag="ACFOCA_000482"
     tRNA            11683..11775
                     /locus_tag="ACFOCA_000482"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11717..11719,aa:Ser,seq:gct)
     gene            12201..12986
                     /gene="trpA"
                     /locus_tag="ACFOCA_000483"
     CDS             12201..12986
                     /gene="trpA"
                     /locus_tag="ACFOCA_000483"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFC6987247.1"
                     /translation="MSRIRQAFAALDGGKALIPYITVGDPDIRTTLALMHGMVANGAD
                     ILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLN
                     PVHKMGYREFAQEAAMAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDR
                     IKTIAELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAENA
                     RKIGRVADAVIVGSRIVKEIENNAGNEAAAVGALVKELKDAVR"
     gene            13023..13895
                     /gene="accD"
                     /locus_tag="ACFOCA_000484"
     CDS             13023..13895
                     /gene="accD"
                     /locus_tag="ACFOCA_000484"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFC6987248.1"
                     /translation="MSWLDKILPPKIKNRSKDGSSNVPEGLWHKCPSCSATVYSTELQ
                     QNNQVCPKCNHHNPLSARQRLNLLLDEDGREEVAGNVKPTDPLKFKDGKKYPDRLSAA
                     RKLTGEDDALVVMKGKMNGLPVVVAAFEFRFIGGSMGSVVGERFVQGVRRAVADNCPF
                     VCVAASGGARMQEGVNSLMQMTKTSAALHLLTEKRLPFISVLTDPTMGGVSASFAFLG
                     DVVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRREMKRRISD
                     LITLLCRQDKVSAA"
     gene            complement(13955..14566)
                     /locus_tag="ACFOCA_000485"
     CDS             complement(13955..14566)
                     /locus_tag="ACFOCA_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HFC6987249.1"
                     /translation="MRRTALLLLALTAGTSLAAGFNQKDTPINTRYRETPEEAAAREF
                     KEHTAKLPPLPDTHSDGWFDIYVDENYGKQPKILLDSLQIMPAPDGSIRYILNIRSDK
                     GYDNLTAEGIFCARFSIRFGNGKPSSYKVFGYGDTVNRRWIQPRNAEWKPIGGTLSRN
                     DALRTVLYQAFCEGDVPADTKGLVQRLKERAGRYAPSIKPHNK"
     gene            14675..14899
                     /locus_tag="ACFOCA_000486"
     CDS             14675..14899
                     /locus_tag="ACFOCA_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HFC6987250.1"
                     /translation="MNSETLDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPG
                     DFEAFCRQTGHVLLDASEQDGVFTLVVKHK"
     gene            14900..15505
                     /locus_tag="ACFOCA_000487"
     CDS             14900..15505
                     /locus_tag="ACFOCA_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987251.1"
                     /translation="MPSEMRMSRLMLLLSAFVLAACNAQNRQSGVRHQDFARVAVDLF
                     RSACVLTQGSFESVSKFAAVGHFVPVGKEDLSHLPPTVAEPDVQALWTLERDGGIYYL
                     SLTRDSCSVKAERADSAALLEHFDGLVRQPPKNANIELRAEQSVQASFEIRQVSYAWR
                     EAGSSEETVLTAQTADSPDLPVQAVLNLTHRSHNGKPLILP"
     gene            15565..16599
                     /gene="pyrC"
                     /locus_tag="ACFOCA_000488"
     CDS             15565..16599
                     /gene="pyrC"
                     /locus_tag="ACFOCA_000488"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFC6987252.1"
                     /translation="MQTLTIIRPDDMHLHLRDGDALKAVAPYTARQMGRAVIMPNLKP
                     PVVSVADALAYKARIMAVLPEGSAFEPLMTLYLTDQATPELVREAKAAGIVAFKLYPA
                     GATTNSDSGVTDLFKLIPVLEEMAKQDILFLVHGEVTDPEIDIFDREAAFIERVMKPV
                     LAQVPNLKVVFEHITTAEAARLVLEAGDNVAASVTPQHLLLNRNDLLVGGVRPHHFCL
                     PVLKRETHRQALVAAVTGEKAHKFFLGTDSAPHAKSAKENACGCAGMFSAMTAVELYA
                     EVFEKAGALDKLEAFASKNGARFYGIPENAGTITLVKQSQTVPVSVPYGDGELVPMRA
                     GGEIGWTVQY"
     gene            complement(16967..17392)
                     /gene="nusB"
                     /locus_tag="ACFOCA_000489"
     CDS             complement(16967..17392)
                     /gene="nusB"
                     /locus_tag="ACFOCA_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFC6987253.1"
                     /translation="MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADE
                     ELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVI
                     INEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR"
     gene            complement(17470..17946)
                     /gene="ribH"
                     /locus_tag="ACFOCA_000490"
     CDS             complement(17470..17946)
                     /gene="ribH"
                     /locus_tag="ACFOCA_000490"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFC6987254.1"
                     /translation="MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVA
                     DENITVATVPGALEIPIALMNLASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSR
                     VALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE"
     gene            complement(17993..18316)
                     /locus_tag="ACFOCA_000491"
     CDS             complement(17993..18316)
                     /locus_tag="ACFOCA_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2185 domain-containing protein"
                     /protein_id="HFC6987255.1"
                     /translation="MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGW
                     RFFSGDETDEYTDDPDNFSIVSLADIAKTNPETAVLLSQPEGSAWELAEDGTFQTVAD
                     WQPQD"
     gene            18483..19202
                     /gene="rnc"
                     /locus_tag="ACFOCA_000492"
     CDS             18483..19202
                     /gene="rnc"
                     /locus_tag="ACFOCA_000492"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFC6987256.1"
                     /translation="MKDDVLKQQAHAAIQKKLGYAFRDISLLRQALTHRSHHAKHNER
                     FEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLG
                     AGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFADRVRRADFQNQAKD
                     GKTALQEALQARRFALPKYRIEEQIGHANDSMFVVSCDLGELGFVCRAKGTSRKAAEQ
                     EAAKEALKWLEEKLPLKKKKK"
     gene            19249..20172
                     /gene="era"
                     /locus_tag="ACFOCA_000493"
     CDS             19249..20172
                     /gene="era"
                     /locus_tag="ACFOCA_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFC6987257.1"
                     /translation="MDIETFLAGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKIS
                     ITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVV
                     VFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFA
                     AAEAVSAKHGLRIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLG
                     EELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDME
                     KLFDTKVFLKVWVKVKSGWADDIRFLRELGL"
BASE COUNT         4556 a         4934 c         5961 g         4827 t
ORIGIN      
        1 gcgggatggt aacggcttgg gtttgcgggg caacgcctgc ggcgagcagt tcgtctatca
       61 tcgcctgctg ttcggcttgg gcgaagaagt gggcaatgga atgcgccact accgtaccga
      121 tgtcgggcag gcaggcgagg acgggttcgg gggcgcggcg gacgcgttcc aatgtgccga
      181 atgcctgcgc cagcgttttg gcggtgcgtt cgccgacgtg gcggatgccg agcgcgaaca
      241 ggaagcgcgc gagttcgggc gttttgccgg attctatgcc cccgaggatg ttttccgccc
      301 acttgaccgg ttgtttttta tgtttgcccg acgcgccgac cgaactgcct tcagacggca
      361 tttgatccga ttcggcaacg gttttgtccg ccgtttcctt cattttttgc agggtcggaa
      421 tatcgaggcg gtagaggtcg gcgaagtggc ggacgaggtc ttgggcgaca agctgttcga
      481 tttgtttttc acccaagccg tcgatgtcca tggctttgcg cgaggcgaag tggattaagc
      541 cttgcgcgcg ttgtgcctga caaagcatac cgccgctgca tcgggcgacg gcttcgcctt
      601 cttcgcgttc gatttcgctg cggcagatgg ggcaatgggt cggcaggcgg tagggcttgt
      661 agagcggaac ggattgggtt tggtttgcag ccggtgcttc ggcaaacaaa tcgtcctgcc
      721 gatgcccgat gccgtctgaa acagcaacgg cggtttcctg catcgggcgg cgttcaaaaa
      781 tcacacgcac gacttcggga atcacgtctc cggcgcggcg cacgacgacg gtatcgccga
      841 cgcgcacgtc ttttcgggaa acttcgtcct gattgtgcag ggtggcgttg gtaacagtta
      901 cgccaccgac gaatacgggc tgtaatcggg caaccggcgt taccgcgccc gtcctgccga
      961 tttgcacgtc aatcgcttcg acaatggtca gggcttcttc ggcagggaat ttgtgggcaa
     1021 ccgcccaacg cggcgcgcgg gagatgaagc cgagttcgtg ctgttgcgcc aagctgttga
     1081 ctttaaccac catgccgtcg atttcgtagg gcagttcggg gcgtttttgc tgcatgtgtt
     1141 cgtaaaacgc caatacttcg tcgatatttt tgaaacagcc gaaattgcca ttgggcagac
     1201 tgaagccgag tgcttggaaa taggcgagtt cctggatgtg ttcttccgcg acgaaaccat
     1261 cttgctggcg ggcgacggag taggggaaaa agtgcagttt gcgttgcgcg gtgatgcgcg
     1321 aatcgagttg gcgtaggctg ccggcggcgg cgttgcgcgg attggcaaag ggtttttgcc
     1381 cgttttcggc ttgtctttta ttgagggcga caaaatcggc tttgagcatc agcacttcgc
     1441 cgcgtacctc gatgagttcg ggcgtatttt cgccgtgcag ccgcaagggg atgttggata
     1501 cggttttgat gttttgggta acgtcttcgc ccgtcgtgcc gtcgccgcgc gttgccgcct
     1561 gcaccaatac gccgtcgcgg tagagcaggc tgatggcgag gccgtcgaat ttgggttcga
     1621 taacgtattc gggtttgccg ccgtccaaac cgtcgcgcac gcgttggtcg aaagcgtaca
     1681 tttcggcatg gtcgaacacg ccgttttcat cttgcgggga aaaagcgttg gtcagcgaca
     1741 gcatcggcac ttcgtggcgc acttcggcaa atcccgccaa aggctcgccg ccgacgcgct
     1801 gggtcggact gtcgggcagt ttgagctcgg gatggtttaa ttccaacgct tcgagctcgc
     1861 ggaataattt gtcgtattcg gcatcgggta cgctgggcgc gtcgagggtg tagtattcgt
     1921 aggcatagcg gttgagcagg tcggtgaggt ggcggatgtg ttgtgcggca aattgtttta
     1981 tatcactatc agacggttta agaagattgg taaagttagt gttatgtttt gagtttggat
     2041 tcatgagaga aggttttcag acgacctttg tctgatacgg gatgaaacgg gcaaaggtcg
     2101 tctgaaaaat gataggttga aaacagctga attttacccg aaaaaaagcg gatatgccgt
     2161 aacgacatat ccgctttgat tgcattcgat tttaggagaa caggcgcaat gcggttttgc
     2221 cgcccggttc gataccgact ttgagcatct cggactgacg agccaataca taagtgcgca
     2281 cgtctttgag ccattgggtc gaaacttctt ccattttgtc gttgaccaga ttcaggttca
     2341 actggccgga caggcgtacc gccaaatcca taaacaaatc gtcgaaggtt ttttcgcctg
     2401 ccggagagtg cgggatgtcg agcagcatac tgaagccttt gtaggactgg ttgtccaaaa
     2461 gggcattggt aaacggctcg ttgttgagcg agcagatgga gaacatggtc gagcccgacg
     2521 tgtcggtata gtggaacgcg ccgtcgtctt ccaaaacgaa acccacgccc gttacggcgg
     2581 aacgcagttc tacgccgctg atgctggtcg gggaaaccaa atggatggcg atggtctggt
     2641 cgacgcgcgc gcagaatgcg tccagtgcgg aagccacttc gataaaggcg gcaaggtcgg
     2701 tgtgcagcgt ctgaccgccc atgctttgtg cgaatgcgtc cacctggcgg ttgaatgcgg
     2761 agagttcttc ctgcgaggca agtccgttgc ggctgactgc ctgaataccc acgataaatg
     2821 cctgatagcg gatgcccggg atgggttcgg caatctggaa atggtcgtcc atggtgcagc
     2881 cgacaatctg gtagcggcag cggttggaaa ggcgcggcag tgcgtgcagt tctttggctt
     2941 cggtcagcgc gatataggag atgaagtcga agcgcacgtc aaaccagggt aattcgactt
     3001 ttgacagttc tttgagcgta atcagcggtt ttgcaggtgt ttgcggaacg ggtgcaggtt
     3061 ttgccggcgc gtcggcaggt ttcggtgcgg aatgtccggt ttggggttcg gaaacggtgt
     3121 gggcggagtt gccgataatg ccgctttctt ccaaggcggt ttcgatttcg gttttgaacg
     3181 gggaggcttt tgcctgtttc tgcttggcga tgtagacggc atcctgttct tgcaggttgc
     3241 gcatggcggg gtcttggggt tttgccgttt ttttgaccgc cggttggggt ttcggcatca
     3301 tgactgaccc gccggacggt ttgccgtcgc ggacatggct ggttttgctg ttgagcaggg
     3361 catctttgtc ggagtgtccg aactggtcgc gcactttttt gcggtattgg ttttcctgat
     3421 acatgttgta ggcgacaacg gcgaggacga cagctagaaa cagtacgatg taaatcatgg
     3481 caatcacttg ttaaatttcg ggatgcagga tacgcaaagt gcgggtactg cggttaaatc
     3541 gggcttgcgt ttccggcagt ctgacggaac ggccgattat aacgtttgaa ttataacgaa
     3601 aattgcaggg tctgacagca gtgtgtcgaa ataagcggaa attttccgaa atgccgtctg
     3661 aaatctgtgg ttttcagacg gcatttctgt ccacgagaaa ccctttctcc cgtatccgcc
     3721 gccagtcgaa aaaatggccg gggtcggttt tgcggccggg cgcgatgtct tggtgccccg
     3781 ttaccgccgt gacggggtag tggcggcaga ttgcgtccaa caaggcttcg agcgaacggt
     3841 attgcgcttc ggcaaacggt tcgaaatcgc agccttccag ttcgatgccg attgaaaatg
     3901 cgttgcattt ttccctgccg ccgaatgaag atacgccggc atggtatgcc atattgtcgc
     3961 aggaaacgaa ctgtaccgtt ttgccgtcgc gtttgattaa gaaatggctg gatacgcgca
     4021 aagtgtgtat caatccgaaa aacgggtggt cgttcgggtc taggcgattg gcaaaaagcc
     4081 tctcaaccgc atccgtacca tattcgaacg gcggcagcga aatgttgtgc aacacaatca
     4141 gggaaaccgt ttcccccgtt tccctcgggc tgaaattggg tgacggggta tggcgtatgc
     4201 tttgaagcca gccgttttgc cagtgtgctt cggcgtgatt gtccatgatg ttcttcctgt
     4261 ccggcgggca atttgggtta tactgtcgcc cgaattttaa gacgtattcc gaatgctggg
     4321 aatcctacca tgttgagaaa attgttgaaa tggtctgccg tttttttgac cgtatcggca
     4381 gccgttttcg ccgcgctgct tttcgtccct aaagacaacg gcagggcata ccgaattaaa
     4441 attgccaaaa accagggtat ttcgtcggtc ggcaggaaac ttgccgaaga ccgcatcgtg
     4501 ttcagcaggc atgttttgac ggcggcggcc tacgttttgg gtgtgcacaa caggctgcat
     4561 acggggacgt acagactgcc ttcggaagtg tctgcttggg atatcttgca gaaaatgcgc
     4621 ggcggcaggc cggattccgt taccgtgcag attatcgaag gttcgcgttt ttcgcatatg
     4681 aggaaagtca tcgacgcaac gcccgacatc gaacacgaca ccaaaggctg gagcaatgaa
     4741 aaactgatgg cggaagttgc ccctgatgcc ttcagcggca atcctgaagg gcagtttttc
     4801 cccgacagct acgaaatcga tgcgggcggc agcgatttac ggatttacca aaccgcctac
     4861 aaggcgatgc aacgccgcct gaatgaggca tgggaaagca ggcaggacgg gctgccttat
     4921 aaaaatcctt atgaaatgct gattatggcg agcctggtcg aaaaggaaac ggggcatgaa
     4981 gccgaccgcg accatgtcgc ttccgtcttc gtcaaccgcc tgaaaatcgg tatgcgcctg
     5041 caaaccgacc cgtccgtgat ttacggcatg ggtgcggcat acaagggcaa aatccgtaaa
     5101 gccgacctgc gccgcgacac gccgtacaac acctacacgc gcggcggtct gccgccaacc
     5161 ccgattgcgc tgcccggcaa ggccgcgctt gatgccgccg cccatccgtc tggcgaaaaa
     5221 tacctttatt ttgtttctaa aatggacggt acgggcttga gccagttcag ccatgatttg
     5281 accgaacaca atgccgccgt ccgcaaatat attttgaaaa aataaaccat gccgtctgaa
     5341 aagtttgtgt tttcagacgg cataccctta ccggaactgc aagcatgaaa ccgcaattca
     5401 tcactttgga cggcatagac ggagccggaa aatccaccaa ccttgccgtc atcaaagcat
     5461 ggtttgaacg gagggggctg cccgtgctgt tcacgcgcga gccgggcgga acgccggtcg
     5521 gtgaggcctt gcgcgaaatc ctgctcaacc ctgaaaccaa agccggtttg cgtgcggaaa
     5581 cactgatgat gttcgccgcc agaatgcagc atattgaaga cgtgatattg cctgcacttt
     5641 cagacggcat ccatgtcgtg tccgaccgtt ttaccgatgc aaccttcgcc tatcagggcg
     5701 gcgggcgggg gatgccgtct gaagacattg aaattttgga acattgggtg cagggcggtt
     5761 tgcgccccga tttgaccctg ctgttggatg tgccgctgga agtgtcgatg gcgcgtatcg
     5821 ggcagacgcg cgagaaagac cgtttcgagc aggaacaggc agatttcttc atgcgtgtgc
     5881 gcagcgttta tctgaaccgt gccgccgcct gtccggaacg ttacgccgtt atcgacagta
     5941 acctcggctt ggatgaagtc agaaacagca tagaaaaagt gttggacgga catttcggct
     6001 gttaatgcgg caaatattga aacaagcgca tccgcccgcg ccgaaaatca aacggcagtg
     6061 ccgcaggtga aaatggcggt atgcgccaaa ctttcggtat gatagaatta cgctcggtta
     6121 caaggcagga tgcgtcggca atattaacga accgcccgta acatgatgac ccgaaagcgt
     6181 ttcggacagt ccgattcaaa tctttttctc gcaacaggat tgacacatgg aaaactcatt
     6241 gaaagaagcc gccctcaagt tccacgaatt acccgttccg ggcaaaattt ccgttacccc
     6301 gaccaaatct ttggcgaccg acaaagattt ggcgttggcg tactctccgg gcgtagccgc
     6361 tccttgtatg gaaatccatg ccgatccgca aaatgcctac aaatacaccg ccaaaggcaa
     6421 cttggtcgcc gtcatttcca acggtacggc cgttttgggc ttgggcgaca tcggcgcgct
     6481 ggcgggcaaa cccgtgatgg aaggtaaagg cgtattgttc aaaaaattcg ccggtgtgga
     6541 cgtgttcgac atcgaaatcg atgaaaaaga cccgcaaaaa ctcgtggaca tcatcgccgc
     6601 tttagagccg accttcggcg gcatcaacct cgaagacatc aaagcacccg agtgtttcta
     6661 catcgaacgc gaattacgca aacgctgcaa aatccccgta ttccacgacg accagcacgg
     6721 cacggccatc attaccgccg ctgccgtatt gaacgccctg cgttttaccg gccgtaaaat
     6781 cgaagaagcg accttggttt gctctggtgc gggtgcggcc gcgattgcct gcttgaacca
     6841 attgctggat ttgggcttga aacgcgaaaa cgtgaccgtt tgcgactcaa aaggcgtgat
     6901 ttacaaaacc cgcgaagaca aagatcgcat ggatgagtct aaacagttct acgccattga
     6961 agacaacggc cagcgcgtat tggccgatgc ggttaaaggc aaagacatct tcttgggtct
     7021 gtccggcgcg aacctgctga cccccgaaat gttgaacacg atgaacgaaa aacccatcgt
     7081 gttcgctatg gccaacccga atccggaaat cctgccgccg ctggcgaaag aaacccgtcc
     7141 ggacgtggtt atcggtaccg gccgctccga cttcccgaac caagtgaaca atgtattgtg
     7201 cttcccgttc atcttccgtg gcgcgttgga tgtcggcgcg acgaccatca acgaagaaat
     7261 gaaacgcgcc tgcgtgtatg ctttggcgga tttggcgatg gaagaagtaa ccgaagaagt
     7321 ggttgccgct tacggtaaga aatttgaatt cggcgcggaa tacctgattc cgactccgtt
     7381 cgattcccgc ctgctgccgc gcgttgctac ggctgccgcc aaagcagcga tggaaagcgg
     7441 cgtggcaacc cgtccgattg cagatttgga agcttacgct gccaagctga gcgaatggaa
     7501 gctgtaagcc gtttgcggtt taaaatgccg tctgaactgt tttcaggcgg cattttgctg
     7561 tcagattgat atagtggatt aacaaaaatc aggacaaagc gacgaagccg cagacagtac
     7621 aaatagtacg gaaccgattc acttggtgtt tcagcacctt agagaatcgt tctctttgag
     7681 ctaaggcgag ccaacgccgt actggttttt gttaatccac tataaatgaa agatactggc
     7741 aaatgaaaga gatgaaacct gtccgttatc atattggcga tatgcccgag acttcaaaac
     7801 aaaccgcctc ccgtcatgac gacagggcag tgggtgttga cgatgattgt tttcatgatt
     7861 cctttggtca atttttgttt gggtgttcgg cagaggcaac ccgaaccgcg ccaatttctg
     7921 taaagcgcag ttgcttattt acctgattgg ttcgcttatc ggtttggtct tcgcgttgtt
     7981 tataggtggg tctgtatcgg gtacgcatga ttaatgcccc gggctgattt tgcttcgagg
     8041 atttgtatcg aatatgccga attgtttcaa atttcatacc gttatcgaac ggcattggca
     8101 aaaaccttat ccggttttgt cttttctgct taagccgctc tccgggctgt ttgccaaaat
     8161 tgcggcaaaa cggcggacgg attttttatc gggaaaacgg caaagcgaaa agctgcccgt
     8221 gcctgtggtc gtggtcggca atattcacgc gggtgggacg gggaaaacgc cgattgttgc
     8281 cgcgctggtg tcgggtttgc aggaaaaggg cgtcaaggtc ggcatcatca gccggggcta
     8341 cgggcgcaag agcaaggcgg ttcatgtatt gaatgctgag agccgagcgg aagatgcggg
     8401 cgatgagcct ttgctgctgt tccgcaaaac cggtgcgccg acggcggtgg gcagcagccg
     8461 tgcagaggca ggcagggcgt tgctggcggc gcatcccgac atcggactga ttgtggcgga
     8521 cgacggtttg cagcattacg ccctgcggcg agatgtggaa atcgcggtgt ttccgtcggc
     8581 ggatacgggg cgcacggatt tggatttact gcccaacggc agtttgcgcg aacctttgtt
     8641 gcggctggat tcggtggatg cggtcgtcgt cagcggcggc aaggcggatg cgctgtttag
     8701 gccgtctgaa aatatgtttc acagccgtat cgaagcggga cggatttacc gtttgaacaa
     8761 tccgtccgaa atactggaca caggccgtct gaaaaatcaa accgtcgtcg ccgtggcagg
     8821 tattgccaag ccggcgcgtt ttttcgattc gttgcggaat atgggcatta ccgtgaagcg
     8881 aaccgtcgcg ctgcctgacc acgccgacat ttcggcggca gatttgcccg atgcggacgc
     8941 ggtcattatt acggagaaag atgcggtcaa attttcagac ggcatttgca ccgataatgt
     9001 ttgggtgttg cccgtttgtg cgataatcga acctgatttg gcggcgtttg tgttggagcg
     9061 gttggaagat gtaccgaagg ccgtctgaaa gcacggtttg ggcggagtga ttacggattt
     9121 gaataagaac gcctcgcgcc gtcattcccg cgcaggcggg aatctaagtc tcgaattttc
     9181 aggaatgcct aggaggcttc agaaatccca aatctccgga tttccacttg gacaggaatg
     9241 agaaaatcgg tcgtattttt tatctgcatt aatcattcgt taaagtattg aatattaaac
     9301 tgaaaacctt gttattgccc ttcgccacgc tggcattgtg caccaacgct tttgccgccc
     9361 cgcccagcga cgcgtcgttg gcgcgttggc tggatacgca gaattttgac cgggatatag
     9421 aaaaaaatat gattgagggc tttaatgccg gatttaaacc gtatgcggac aaagcccttg
     9481 ccgaaatgcc ggaagcgaaa aaagatcagg cggcaaaagc ctttaaccgc tatcgtgaga
     9541 atgttttgaa agatttgatt acgcccgaag tgaaacaggc tgtccgcaat actttattga
     9601 agaatgcccg tgagatatac acgcaagaag aaattgacgg catgattgcc ttttacggtt
     9661 cgcctgtcgg tcagtccgtc gttgccaaaa atccgcgctt aatcaagaaa tcgatgagtg
     9721 aaatagcagt atcttggact gcattgtcag ggaaaatcgc gcgacatcat ctgcccgcgt
     9781 ttacggaaga gttgcggcgc atcatctgcg gcggtaaaaa tcccgatgcg ggctgtaaac
     9841 aagccggaca ggttgggaaa aggcatcaga aataaatgat agccgtctga aatattgaag
     9901 agggcatccg attgattgaa ccatcaaacc cgaaagcaac cctatggaaa aaaaattctt
     9961 agacatcctc gtctgccccg ttaccaaagg caggctggaa tatcatcagg acaaacagga
    10021 attgtggagc cgtcaggcga agcttgccta tccgattaaa gacggcattc cctatatgct
    10081 ggaaaacgaa gcgcgagcgt tgagcgaaga ggaactcaaa gcatgactga attcgtcgta
    10141 ttgattccgg cgcggctgga ttcatcgcgc ctgcccggaa aagccttggc ggatatccac
    10201 ggtaaaccga tggtcgtgcg cgttgccgaa caggcggcaa aaagtaaagc cgtgcgcgtc
    10261 gtcgttgcca ccgaccatcc cgatattcag acggcctgtc aggcgcacgg cgtcgaagtc
    10321 gtcatgactt caaaccggca cgaaagcggc acgacgcgcc ttgccgaagc ctctgccgcg
    10381 ctgaagctgc cgccgcatct ggtggttgtc aacgtacagg gcgacgagcc gctgattgcc
    10441 cccgaactca tcgaccgcac tgccgaagtc ttggtggaaa acaacgtaca gatggcaact
    10501 gcggcacacg aattgcacga tttcgacgaa ttgatgaatc ccaatgccgt caaagtcgtc
    10561 ctcgacaaaa accgcaacgc catctacttc agccgcgccc cgattcccta tccgcgcgat
    10621 gcgatgcgtg caggaaaacg cgaaatgccg tttgaaaccg ccgtcctgcg ccatatcggc
    10681 atctacgcct accgcgtcgg cttcctgcaa cgctacaccg aaatgagcgt ttcgtcgctg
    10741 gaaaccattg aatcgctgga gcaactgcgc gtcctgtggc acggctactc gattgccgtc
    10801 gaaaccgcca aagaagcccc cgccgccggt gtggatacgc aggaagattt ggacagggtc
    10861 cgcgccgtat ttcagaccgt ataaaacagg ttcaaaggga aaagatatgc agcaacatat
    10921 tgaaaagtgg cagcacttaa gccgtgaaga acagaaaatc cttgccgaag tatggggtct
    10981 cgtgcaaaac gatgatcagg aggttcacta tgaaatgctt aaattgaacg cacccgacga
    11041 agccagcggc gaattttggt tcagaatggc agaaacactc agcaccctgc cgcccaaccg
    11101 ttccctcgac cttagaatga acggcggcag gctggcgacc gccgtatcca tcctttccgt
    11161 catgattgaa gacaatcccg acataccgca gctttgggcg caaaaaatta ccgcgctcaa
    11221 ttatagtgga ttaaatttaa accagtacgg cgttgcctcg ccttgtcgta ctatctgtac
    11281 tgtctgcggc ttcgtcgcct tgtcctgatt tttgttaatc cactatattt ggcacacggg
    11341 cacaaagccc gtgccgacgg tttggcacaa cagcccgaca aagcggcaga agccaacgag
    11401 gaggaatacc tgaccaaagc cctgtcgcaa aacctgctgt caacattgga tgccgcgctt
    11461 gcacgttttc ctgaagacgc gtggtttcag gaaatcaaac aggatgcaca aaagcatttt
    11521 gcttgaggat gtggcagtca ggaatatttc cattcaggaa gaaaagaagt gcctgattgg
    11581 gtataatcag ggtaaatctt attttatttc aaaagattaa tatttgcttt ctgtttttcc
    11641 ttgacggtat cggaaaagtt gattatagtt acagcttcct taggagtaat ggctgagagg
    11701 ctgaaggcac ttccctgcta aggaagcatg tggggtcaac ctgcatcgag ggttcgaatc
    11761 cctcttactc cgccagataa aaaatagacg ctgtgtttta cagcgtctat ttttttatgc
    11821 aattttatag cgggttggtg caaaaccagt atggtattgc cctgtcttga ttctgaattt
    11881 tgttatagtg gattaacaaa aaccagtacg gcgttgcctc gccttagctc aaagagaacg
    11941 attctctaag gtgctggagc accaagtgaa tcggctccgt actatttgta ctgtctgcgg
    12001 cttcgtcgcc ttgtcctgat ttttgttaat ccactataat ccgagatgct tgccgtttat
    12061 ttccgcctcg ttcaaacggc ggctctgatt tgcgtggttt ctgtttgccg tattcgccta
    12121 tccgtaccgc aaatgttata ctgggaaaaa tttactgatt gtgttttatg gcatatttgc
    12181 cgataggatg gaagagacaa atgagcagaa tccggcaggc ttttgccgct ttggatggcg
    12241 gaaaggcatt gattccctat attacggtgg gcgaccccga tattcggaca actttggcat
    12301 tgatgcacgg catggttgca aacggtgcgg atattttgga gttgggcgtg ccgttttccg
    12361 atccgatggc ggatggaccg gttattcagc gtgcggcgga gcgggcgttg gcaaacggga
    12421 tttcgctgcg cgatgtcttg gatgtcgtca gaaaattccg tgaaaccgac acgcaaacgc
    12481 cggttgtttt gatgggatat ttgaaccctg tacataagat gggttatcgg gagtttgctc
    12541 aggaagccgc aatggcgggt gtggacggcg tgttgacggt ggattcccct gtcgaaacca
    12601 tcgatccgct ctatcgcgag ctgaaggata acggggtcga ctgtattttc ctgattgcgc
    12661 cgacgacgac ggaagaccgt attaaaacca ttgccgagct ggcaggcgga tttgtctatt
    12721 atgtttcgct caagggcgta acgggcgcgg caagtttgga tacggatgag gtttcgcgta
    12781 aaatagagta tttgcatcag tatatcgata ttcccatcgg tgtcggtttc ggcatcagca
    12841 atgcggaaaa cgcgcgcaaa atcggccggg ttgccgacgc ggtcattgtc ggcagccgga
    12901 ttgtgaaaga gattgaaaac aatgcgggca acgaggctgc ggccgtcggt gctttggtca
    12961 aagagttgaa ggatgccgtg cgctgattct gtcacgcatt ctaaatattt taggagttgt
    13021 ccatgagctg gttagataaa atcctgccac ccaaaatcaa aaaccgcagc aaagacggtt
    13081 cttccaatgt tcccgagggt ttgtggcaca aatgtccgtc ttgttcggca accgtttatt
    13141 cgaccgagtt gcagcagaac aatcaggttt gtccgaaatg caaccaccac aatccgttgt
    13201 cggcacgaca acgcctgaat ctgcttttgg atgaggatgg cagagaggag gttgccggaa
    13261 atgtcaaacc gacagatcct ttgaagttta aagacggcaa aaaatatccg gatcgtttga
    13321 gtgcggcacg caagctgacc ggggaagatg atgctttggt ggtaatgaaa ggcaagatga
    13381 acggtctgcc cgttgtggtt gctgcgtttg agttccgctt tatcggcggt tcgatgggtt
    13441 cggttgtggg cgaacgattc gtacagggcg tccgccgggc ggttgccgac aattgtccgt
    13501 tcgtctgtgt ggcggcttcc ggcggtgcgc gtatgcagga gggtgtgaac tcattgatgc
    13561 agatgacgaa aaccagtgcc gcgctgcatt tgctgacgga aaaacgcctg ccgtttatat
    13621 cggtgttgac cgatccgact atgggcggcg tatccgccag cttcgcattt ttgggtgatg
    13681 tcgtattggc tgaacccaat gccctaatcg gttttgcggg accgcgcgtt attgaacaga
    13741 ctgtacggga aaccttgccg gaaggcttcc agcgtgctga gtttttactg gagaaaggcg
    13801 caatcgacca gattgttgac cggcgtgaga tgaagcggcg catcagtgat ttgattacgc
    13861 tgttgtgccg tcaggacaaa gtttccgccg cttgatggct gatgaatcga ataccgtctg
    13921 aaaccgatgt ttcagacggt atttttgtgt ctggttattt gttgtgcggc tttatcgacg
    13981 gggcatagcg tccggcacgt tctttcaggc gttgtaccaa acctttcgtg tcggcgggta
    14041 catcgccctc gcagaatgcc tgatacagga cggtgcgcag tgcgtcgttg cggcttaatg
    14101 taccgcctat cggtttccat tcggcgtttc ggggctgtat ccagcggcgg ttgaccgtgt
    14161 cgccgtagcc gaacacttta taggaggaag gtttgccgtt gccgaacctg atggagaagc
    14221 gggcgcagaa tatgccttcg gcagtcaggt tgtcgtagcc tttgtcggag cggatattga
    14281 gaatgtagcg gatgctgccg tcgggcgcgg gcataatttg caggctgtcg agcaggattt
    14341 tcggctgttt gccgtaattt tcatccacat aaatgtcgaa ccagccgtcc gagtgcgtat
    14401 cgggcagcgg cggcagtttg gcggtatgtt ctttaaattc gcgggcggcg gcttcttcgg
    14461 gcgtttcgcg gtagcgggtg ttgatcggcg tgtctttttg gttgaagccg gcagcaaggg
    14521 acgtgccggc ggtgagtgcg agcagcagga gggcggtgcg gcgcataagt ttctccaaat
    14581 tgaaaacggc gttattttat gggttggcaa agggggctgc aagcaactgg ggtataatct
    14641 ccccccgatt cccatttttt aaacggtaca aacgatgaac agcgaaactt tagacgtaac
    14701 cggattgaaa tgtcccctgc cgattttgcg ggcgaaaaag gctttggcgc aaatgcagca
    14761 gggcgacgtg ttgaccgttc tggcaaccga cggcggcgca ccgggggatt ttgaggcttt
    14821 ttgccgccaa accggtcatg tgctgttgga tgcttccgaa caggacggcg tgttcacgct
    14881 ggtcgtcaag cacaaataaa tgccgtctga aatgcggatg tcccgattga tgttattgct
    14941 gtcggcattt gtgcttgctg cgtgtaatgc ccaaaaccgg caatccggtg tacggcatca
    15001 ggatttcgcg cgtgtagccg tcgatttgtt tcggagtgcc tgcgtcctga ctcaaggcag
    15061 ttttgaatcg gtttccaagt ttgccgctgt cggacatttt gtccctgtcg gaaaggaaga
    15121 cctgtcccat ctgccgccca ctgttgcaga acccgatgta caggcgttgt ggacgcttga
    15181 acgcgatggc ggcatttatt atttgagcct gacgcgcgac agttgcagtg tgaaagccga
    15241 gcgggcagac agtgccgcgc tgttggaaca ttttgacgga cttgtccgac agccgccgaa
    15301 aaatgccaat atagaattga gggcggaaca gtcggtgcag gcatcatttg aaatccgcca
    15361 agtcagctat gcctggcggg aagcaggcag ctccgaagaa accgtattga ccgcacaaac
    15421 cgccgattcc ccggatttac ccgtacaggc agttttgaac ctgacgcacc gttcccacaa
    15481 cgggaaaccc ctaattctcc cctaacttca gacggcataa agtcggcatg ccgtctgaac
    15541 attcaaataa aacaaaggaa aaccatgcaa accctgacca ttatccgccc cgacgatatg
    15601 cacctgcacc tgcgcgacgg cgacgcgctc aaagccgttg ccccttatac cgcccgccaa
    15661 atggggcgcg ccgtcattat gcccaacctc aaaccgcccg tcgtcagtgt agccgacgcg
    15721 cttgcctaca aagcgcgcat tatggcggtg ttgcccgaag gcagcgcgtt tgagccgctg
    15781 atgacgcttt acctgaccga ccaagccacg cccgagctgg tgcgcgaagc caaagccgcc
    15841 ggcatcgtcg ccttcaaact ctaccccgcc ggcgcgacga ccaattccga ttccggcgta
    15901 accgacctat tcaagctcat ccccgtgttg gaagaaatgg caaaacagga catcctgttc
    15961 ctcgttcacg gcgaagtaac cgaccccgaa atcgacattt tcgaccgcga agccgccttt
    16021 atcgagcgcg tgatgaaacc cgttttggcg caagtgccga atcttaaagt cgtgtttgaa
    16081 cacattacca ccgccgaagc cgcccgcctg gttttggaag caggcgacaa cgttgccgcc
    16141 tctgtgaccc cgcaacacct cctgctcaac cgcaacgacc tcttggtcgg cggcgtgcgc
    16201 ccccatcatt tctgcctgcc cgtcctcaag cgcgaaaccc accgtcaggc attggttgcc
    16261 gccgttaccg gcgagaaggc gcacaaattc ttcctcggca ccgactccgc gccgcacgcc
    16321 aagtccgcca aagaaaacgc ctgcggctgc gccggtatgt tcagcgcgat gaccgccgtc
    16381 gagctttacg ccgaagtgtt tgaaaaagca ggcgcgttgg acaaactcga agcctttgcc
    16441 tcgaaaaatg gcgcaaggtt ttacggcatt ccggaaaacg ccggcacgat caccctcgtc
    16501 aaacaaagcc aaaccgtccc cgtaagtgtt ccctacggcg acggcgaact tgtcccgatg
    16561 cgcgcgggcg gcgaaatcgg ctggacggtg cagtattgat gggctggaaa caaaatgccg
    16621 tctgaaggga gggctttcag acggcatttg tgttgctgac tgattgatac gtcaacggcg
    16681 tttgagtttg ttacgtttcg gttatttccg ataaattccc acaattttca aatttcgcca
    16741 ttcccacgaa ggcaggaatc tggaaattcg atgcgactag agtttatcaa aaacggcagc
    16801 aactcaaaaa accggattcc cgcctgcgcg ggaatgacga gattgaagtt tcagaattta
    16861 tttgaaatac ccaaaattca aaaaaccaaa ttcccacatg cgtgggaatg acgaaacaaa
    16921 gaaagcagaa ataaggacat agaactttct ttaaatttgt gatgcatcaa cggcgtttgg
    16981 gctcgtcggg gcggatttgg gcggcgagtt tgtcgaggat gccgttgacg aatttgtgcc
    17041 cgtccgtgcc gccgaaggtt ttggtaactt cgatggcttc gttgataatg acggggtagg
    17101 gcgtttcggg catggcggac agctcgtggc aggcggtcag caggacggcg cgttcgatgg
    17161 gattgaggtc tttttcgtcg cggtcgagca gggggcggat tttttggatg tagtccgctg
    17221 cgttggtttg cgtaccgaag aaaagtttgt tgaacaattc ttcgtccgct ttggcaaagt
    17281 cgggcatttc gcggatgttt ttagcaattt cgggcgcggc ggtgcggttg ataagggatt
    17341 ggtaaacggc ttgtacggca agctcgcggg aacggcggcg ggctgttttc atgatttttc
    17401 cttgaaacgg ttgggcggca cggtatgccg tctgaaacgg aaagggcgta ttggtgtacg
    17461 ccctgtttgt tattcttcgt cttcaaactg ttcttcgagc agcaggttga cgaggttggc
    17521 gcattcgacg gcgactttgg cggcatccga ggctttttct tcaatccgtt cgattgcctg
    17581 tgcgtcgttt tcggtggtca ggacggcatt ggcaatcggg atgttgtagt cgagtgcgac
    17641 gcggctgacc cctgctccgg attcgttgga aaccagctcg aaatggtagg tttcgccacg
    17701 gataacgacg ccgatggcaa tcagtgcgtc aaatttttca gaagaggcaa ggttcatcag
    17761 cgcgatgggg atttcaagcg cgccgggtac ggtggcgacg gtaatgtttt cgtctgccac
    17821 gcccaattct tggagggtgc ggcagcagac tttgagcatt tcgctgccga tttcgttggt
    17881 gaaacgtgcc tgtacgatgc cgatgcggag gtgtttgccg tcaaggttgg gggcgatggt
    17941 gttcattggg tgtcctttgg tattcggggt ttcggaatgc cgtctgaagg tttcagtctt
    18001 gcggttgcca gtcggcgacg gtttggaatg tgccgtcttc tgccaattcc cacgcgctgc
    18061 cttcaggttg ggaaagcagt acggcggttt cagggttggt tttggcgatg tcggcgaggc
    18121 tgacgatgct gaagttgtcg ggatcgtcgg tgtattcgtc ggtctcgtcg ccgctgaaga
    18181 aacgccagcc gctgtcgttt tcaaaaacgg gggcttcgcg gtagaggaag ccgacgggcc
    18241 ggttttgttt ggcgacggtg ttggtggcga tacagcggtc gagtgccgag gaaagtgctt
    18301 gtgcaaatgc gttcattacg ggaatacgtt gggggaaaac ttacggattt taccacgatt
    18361 cgtgcgttgt cggcagacgg cggcggtttg gtggtacaat gtgcgccgtt tgcagcctta
    18421 aggtgtttct gtatttttgg agtatggaaa cgcattcggg ctgttttttg cggaagacgg
    18481 taatgaaaga cgatgttttg aaacagcagg cacacgcggc gatacagaag aaactgggct
    18541 acgcgttccg cgatatttcg cttttgcggc aggctttgac gcacaggagc catcatgcga
    18601 agcacaacga gcggttcgag tttgtcggtg attcgatttt gaattatacg gtggcgcgga
    18661 tgctgtttga cgcgtttccg aagttgaccg agggcgagtt gtcgcggttg cgggcaagtc
    18721 tggtcaatga gggcgtgctg gcggaaatgg cggcggaaat gaatgtcggc gacggcctgt
    18781 acttgggggc gggcgagttg aagagcggcg gcttcagacg gccttcgata ctggcagacg
    18841 cgatggaggc gatgtttgct gccgtcagct tcgatgccga tttcaacacg gcggaaaagg
    18901 tggtgcgcca tttgtttgcc gatcgcgtcc ggcgcgccga ttttcaaaat caggcaaaag
    18961 acggcaaaac tgctttgcag gaggcgttgc aggcacgccg ctttgctttg ccgaaatacc
    19021 gtatcgaaga gcaaatcggc catgccaacg acagtatgtt tgtggtttcc tgcgatttgg
    19081 gcgaactggg tttcgtgtgc cgtgccaaag ggacgagccg caaggcggcg gaacaggagg
    19141 cggcgaaaga ggctttgaaa tggctggaag agaagctgcc gctgaagaag aaaaagaaat
    19201 gaggcggcgc gtgaatatgc cgtctgaaat gtggatatga aagcgaatat ggatattgaa
    19261 accttccttg caggggaacg cgccgccggc ggataccgtt gcggcttcgt ggcgattgtc
    19321 ggtcgtccga acgtgggcaa atcaacgctg atgaaccatc tcatcggtca gaaaatcagc
    19381 atcaccagca aaaaggcgca gacgacgcgc aaccgcgtaa cggggattta taccgacgat
    19441 accgcgcagt tcgtgtttgt cgatacgccc ggctttcaaa ccgaccaccg caacgcgctc
    19501 aacgacaggc tgaatcaaaa cgttaccgag gcgcttggcg gcgtggatgt ggtggttttc
    19561 gtcgtggaag cgatgcgctt taccgatgcc gaccgtgtcg tgttgaaaca actgcccaag
    19621 cacacgccgg tcattttagt ggtcaacaaa atcgacaagg acaaggcgaa agaccgttac
    19681 gcgctggagg cgtttgttgc ccaagtgcgc gccgaatttg aatttgcggc ggcggaggcg
    19741 gtcagtgcga aacacggatt gcggattgcc aacctgttgg agctgctcaa gccgtatctg
    19801 cccgaaagcg tgccgatgta tcccgaagat atggttacgg acaaatcggc gcgtttttta
    19861 gcgatggaaa tcgtgcgtga aaaattgttc cgctatttgg gcgaggaatt gccttatgcg
    19921 atgaacgtcg aagtggagca gtttgaagag gaagacggtt tgaaccgcat ctatatcgcc
    19981 gttttggtcg ataaggaaag ccaaaaggcg attttaatcg gcaaaggcgg ggagcgtttg
    20041 aagaaaattt ccaccgaagc gcggttggat atggaaaaac tgtttgatac caaagtattt
    20101 ttgaaggtct gggtcaaagt caaatccggt tgggcggacg acatccgctt cctgcgcgag
    20161 ctgggtttgt agtttttctt gctgaacttt acgcaaatgc cgtccgaaca ggtttcagac
    20221 ggcattttgt ttcaatcggg aatatctttg ttaaaaacgg gttgatatta tctgtgca
//
LOCUS       DAXIFS010000017        19472 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.017, whole genome shotgun sequence.
ACCESSION   DAXIFS010000017 DAXIFS010000000
VERSION     DAXIFS010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19472
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.017"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..758
                     /gene="pglE"
                     /locus_tag="ACFOCA_000494"
     CDS             <1..758
                     /gene="pglE"
                     /locus_tag="ACFOCA_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="(galactosaminyl)2-N,
                     N'-diacetylbacillosaminyl-alpha1-diphospho-di-trans,
                     octa-cis-undecaprenol synthase PglE"
                     /protein_id="HFC6987258.1"
                     /translation="SEARNTGIKNSNGKYIVFIDSDDFINCQVLLDFLSKDDIDMPDV
                     VFLNAVKYDKGSVSYFGEDYQPEKILNQSKVEVLKGLCRFRKFPGSAWNKIIKRELII
                     KEKLFFEKGIYSEDVEWSMRLFNAATTFSYLDGCYYYYRQGREDSITGTVSEKSIKSL
                     LYILEKNAEMEFNRDISSYLYSFLSYEYLVLLFIMTSKNIACDADIKRRAYHLRFMLL
                     KSNKLIYKLIFPIITLFGVDITGRILKAIRGNI"
     gene            799..1329
                     /locus_tag="ACFOCA_000495"
     CDS             799..1329
                     /locus_tag="ACFOCA_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFC6987259.1"
                     /translation="MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVL
                     RGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNR
                     VLVGMGTTVLDDAVIEDEVMIGAGSLVPPRKRLAGGYLYVGSPVRQVRVLTDEEKAFL
                     KYSAAHYVKLSKQYGM"
     gene            complement(1346..1477)
                     /locus_tag="ACFOCA_000496"
     CDS             complement(1346..1477)
                     /locus_tag="ACFOCA_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor domain protein"
                     /protein_id="HFC6987260.1"
                     /translation="MPSKPEKRASDGIFACNSNADGQNQGASDTVIGHLVRVNLGLT"
     gene            complement(1496..3091)
                     /locus_tag="ACFOCA_000497"
     CDS             complement(1496..3091)
                     /locus_tag="ACFOCA_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HFC6987261.1"
                     /translation="MSQEILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGT
                     VKGKKTGKFATSDWMEIEKQRGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVL
                     TAVDSALMVIDAAKGVEAQTIKLLNVCRLRDTPIVTFMNKYDREVRDSLELLDEVENI
                     LQIRCAPVTWPIGMGKNFKGVYHILNDEIYLFEAGGERLPHEFDIIKGIDNPELEQRF
                     PLEIQQLRDEIELVQAASNEFNLDEFLAGELTPVFFGSAINNFGIQEILNSLIEWAPA
                     PKPRDATVRMVEPDEPKFSGFIFKIQANMDPKHRDRIAFLRVCSGKFERGMKMKHLRI
                     NREIAASSVVTFMSHDRELVEEAYAGDIIGIPNHGNIQIGDSFSEGEQLAFTGIPFFA
                     PELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQVFKPMSGADLILGAVGVLQFEVVTSR
                     LANEYGVEAVFDSASIWSARWVSCDDKKKLAEFEKANAGNLAIDAGGNLAYLAPNRVN
                     LGLTQERWPDIVFHETREHSVKL"
     gene            complement(3198..3593)
                     /gene="hisI"
                     /locus_tag="ACFOCA_000498"
     CDS             complement(3198..3593)
                     /gene="hisI"
                     /locus_tag="ACFOCA_000498"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HFC6987262.1"
                     /translation="MDKNLLEAVKFDEKGLVCAIAQDAETKRILMVAWMNAEALQKTV
                     ETGFAHYYSRSRQKQWMKGEESGHTQKVRELRLDCDGDAIVMLIAQNGGIACHTGRES
                     CFYKVWRGSAWETADAVLKDEKEIYGSTH"
     gene            complement(3624..4391)
                     /gene="hisF"
                     /locus_tag="ACFOCA_000499"
     CDS             complement(3624..4391)
                     /gene="hisF"
                     /locus_tag="ACFOCA_000499"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFC6987263.1"
                     /translation="MALAKRIIPCLDVKDGRVVKGVNFIGLRDAGDPVEAAKRYNGEG
                     ADELTFLDITASSDNRDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVS
                     INTAAVTCPDLINEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEW
                     AIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGI
                     TEGKADAVLAAGVFHFGEIAIREAKRAMREAGIEVRL"
     gene            complement(4404..5141)
                     /gene="hisA"
                     /locus_tag="ACFOCA_000500"
     CDS             complement(4404..5141)
                     /gene="hisA"
                     /locus_tag="ACFOCA_000500"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFC6987264.1"
                     /translation="MLLIPAIDLKEGRCVRLRQGLMEEATVFSDSPAETALHWFKQGA
                     RRLHLVDLNGAFAGVPQNLPAIKDILAAVAKDIPVQLGGGIRDLKTIGQYLDLGLNDV
                     IIGTAAVKNPDFVREACKAFPGRIIVGLDAKDGMAAIDGWATVTGHHVIDLAKRFEDD
                     GVNSIIYTDIGRDGMMSGVNIDATVKLAQAVRIPVIASGGLTGLDDIRALCAAEKHGV
                     AGAITGRAIYEGSIDFAQAQQLADSLD"
     gene            complement(5174..5812)
                     /gene="hisH"
                     /locus_tag="ACFOCA_000501"
     CDS             complement(5174..5812)
                     /gene="hisH"
                     /locus_tag="ACFOCA_000501"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFC6987265.1"
                     /translation="MQIAIIDYGMGNLHSVLKSVRTAGQLAGKNTEIFLSGDPERVSR
                     ADKVIFPGQGAMPDCMAALTRGGLDEAVKDALKNKPFFGICVGAQLLFDHSEEGNTDG
                     LGWFGGKVRRFERDLRDPQGCRLKVPHMGWNTVRQTQNHPLFKDIPQDTRFYFVHSYY
                     FAPENPETILGESDYPSPFACIVGKDNVFATQFHTEKSHDAGLTMLKNFLNW"
     gene            complement(5943..7445)
                     /gene="pta"
                     /locus_tag="ACFOCA_000502"
     CDS             complement(5943..7445)
                     /gene="pta"
                     /locus_tag="ACFOCA_000502"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFC6987266.1"
                     /translation="MAKVLIVPVSAGLDASAAAQAFAKALDAQIFQAVDATAETLLAQ
                     GKSDDWFDALVGKVAALDAANLVIEGIAPDADKIYLAGKNVELALSLDAAAVFAVRSD
                     NADADELANRLNLAKQFFAAAPGVLEGFVVDGAAASVAEAAAEKTGLTFFGSSDALKD
                     VSVLAGREAKRLSPAQFRYNLIDFARQADKRIVLPEGAEPRTVQAAAICHEKGIARCV
                     LLAKREEVEAVAKERGISLPDSLEIIDPASLVEQYVEPMCELRKSKGLTPEDARKQLQ
                     DTVVLGTMMMAQNDVDGLVSGAVHTTANTIRPALQLIKTAPGASLVSSVFFMLLPNQV
                     LVFGDCAVNPNPTAQQLADIAIQSADSAKAFGIDPKVAMISYSTVNSGSGPDVDTVIE
                     ATKLAREKRPDLAIDGPLQYDAATVPGVGKSKAPGSPVAGQATVLVFPDLNTGNCTYK
                     AVQRSANVLSVGPLLQGLRKPVNDLSRGALVEDIVFTIALTAVQAKQMEG"
     gene            complement(7630..8688)
                     /gene="fbpC"
                     /locus_tag="ACFOCA_000503"
     CDS             complement(7630..8688)
                     /gene="fbpC"
                     /locus_tag="ACFOCA_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein FbpC"
                     /protein_id="HFC6987267.1"
                     /translation="MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIVGASGCGKT
                     TLLRCLAGFEQPDFGEISLSGRTIFSKNTNLPVRERRLGYVVQEGVLFPHLTVYRNTA
                     YGLGNGKGKTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELI
                     LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL
                     QTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCGLGRLPVQSGAPAGTRGTL
                     LIRPEQFSLHPHSAPTASIHAVVLKTTPKARHTEISLRVGQTVLTLNLPSAPTLSDGI
                     SAVLHLDGPALFFPGNTL"
     gene            complement(8709..10226)
                     /gene="fbpB"
                     /locus_tag="ACFOCA_000504"
     CDS             complement(8709..10226)
                     /gene="fbpB"
                     /locus_tag="ACFOCA_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease FbpB"
                     /protein_id="HFC6987268.1"
                     /translation="MSPKKIPIWLTGLILLIALPLTLPFLYVAMRSWQVGINRAVELL
                     FRPRMWDLLSNTLTMMAGVTLISIVLGIACALLFQRYRFFGKTFFQTAITLPLCIPAF
                     VSCFTWISLTFRVEGFWGTVMIMSLSSFPLAYLPVEAALKRISLSYEEVSLSLGKSRL
                     QTFFSAILPQLKPAIGSSVLLIALHMLVEFGAVSILNYPTFTTAIFQEYEMSYNNNTA
                     ALLSAVLMAVCGIVVFGESIFRGKAKIYHSGKGVARPYPVKTLKLPGQIGAIVFLSSL
                     LTLGIIIPFGVLIHWMMVGTSGTFALVSVFDAFIRSLSVSALGAILTILCALPLVWAS
                     VRYRNFLTVWIDRLPFLLHAVPGLVIALSLVYFSINYTPAVYQTFIVVILAYFMLYLP
                     MAQTTLRTSLEQLPKGMEQVGATLGRGHFFIFRTLVLPSILPGITAAFALVFLKLMKE
                     LTATLLLTTDDVHTLSTAVWEYTSDAQYAAATPYALMLVLFSGIPVFLLKKYAFK"
     gene            complement(10294..11289)
                     /gene="fbpA"
                     /locus_tag="ACFOCA_000505"
     CDS             complement(10294..11289)
                     /gene="fbpA"
                     /locus_tag="ACFOCA_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     FbpA"
                     /protein_id="HFC6987269.1"
                     /translation="MKTSIRYALLAAALTAATPALADITVYNGQHKEAAQAVADAFTR
                     ATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTIN
                     ETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYAPT
                     SGAFLEQVVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYY
                     WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLASKEG
                     QRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK"
     gene            complement(11540..12010)
                     /locus_tag="ACFOCA_000506"
     CDS             complement(11540..12010)
                     /locus_tag="ACFOCA_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4375 domain-containing protein"
                     /protein_id="HFC6987270.1"
                     /translation="MTDTDTQADRFEQMMWQAVDKLFEQHDGKLESMDGREQELVLIW
                     RTEADIGNGSILQFVCNWSFPAAEKTCSVLKKIGAVHSAMLIHRAADALGKEIRHLQS
                     EGKNLKEMWDITQHLDNKTASLPNSLDEQYWQDPDKLYLPGWQYYSGNPVQTLF"
     gene            complement(12068..13444)
                     /gene="argH"
                     /locus_tag="ACFOCA_000507"
     CDS             complement(12068..13444)
                     /gene="argH"
                     /locus_tag="ACFOCA_000507"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFC6987271.1"
                     /translation="MHDKTWSGRFNEPVSELVKQYTASIGFDRRLAEWDIQGSLAHAQ
                     MLKETGVLDEGDLADIRRGMAEILEEIRSGKIEWSSDLEDVHMNIERRLTDKIGDAGK
                     RLHTGRSRNDQVATDIRLWLRDQITVIQSLIQSLQTALLDLAEQNAETVMPGFTHLQV
                     AQPVSFGHHMLAYVEMLGRDNERMADCRCRVNRMPLGAAALAGTTYPIQREITAELLG
                     FEQICQNSLDAVSDRDFAIEFTAAASLVMVHLSRLSEELILWMSPRFGFIDIADRFCT
                     GSSIMPQKKNPDVPELVRGKSGRVIGHLIGLITLMKSQPLAYNKDNQEDKEPLFDTAD
                     TLIDTLRIYADMMRGVTVKPDNMRAAVMQGFATATDLADYLVKKGMPFRDAHEVVAQA
                     VRHADQAGVDLSELPLEVLQGFSDLIADDVYGVLTPEGSLNARNHLGGTAPEQVRFQV
                     KRWREMLA"
     gene            complement(13463..14332)
                     /gene="galU"
                     /locus_tag="ACFOCA_000508"
     CDS             complement(13463..14332)
                     /gene="galU"
                     /locus_tag="ACFOCA_000508"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6987272.1"
                     /translation="MKPIRKAVFPVAGMGTRFLPATKASPKEMLPIVDKPLIQYAVEE
                     AVEAGCTEMVFVTGRNKRSIEDHFDKAYELETELEMRHKDKLLEHVRNILPPNITCLY
                     IRQAEALGLGHAVLCARAAIGDEPFAVILADDLIDAPKGALKQMIEVYERSGNSILGV
                     ETVEPSQTGSYGIVETEQLKQFQRIIGIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     NLPRGAGNEIQLTDGIAKLLDHEFVLAHPFEGTRYDCGSKLGYLEATVAYGLKHPETG
                     EPFRRLLEKYRTE"
     gene            complement(14360..14959)
                     /gene="rdgB"
                     /locus_tag="ACFOCA_000509"
     CDS             complement(14360..14959)
                     /gene="rdgB"
                     /locus_tag="ACFOCA_000509"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFC6987273.1"
                     /translation="MSEKPEKIVLASGNAGKLEEFGNLFKPYSITVLPQSAFGIPECP
                     EPYPTFVENALAKARHAAEYSGLPALADDSGICAAALNGAPGIHSARYAGDNPKSDTA
                     NNLKLAAELVGKADKSCCYVCVLVFVLHKDDPRPIIAEGVWHGQWNGVPAGENGFGYD
                     PYFYLPGHGKTAAELDSEVKNRESHRAQALAELLRKLAL"
     gene            complement(14952..15185)
                     /locus_tag="ACFOCA_000510"
     CDS             complement(14952..15185)
                     /locus_tag="ACFOCA_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO_0222 family membrane protein"
                     /protein_id="HFC6987274.1"
                     /translation="MNRRKIYLLSVALFTLAFMLLVLLGAYLLTVGSKAFAVASFFFA
                     FGALFGQIGSLALYLRHKSLRAAQSAAKENRYV"
     gene            complement(15293..15826)
                     /locus_tag="ACFOCA_000511"
     CDS             complement(15293..15826)
                     /locus_tag="ACFOCA_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFC6987275.1"
                     /translation="MADFNQILTPGDVDGGIINVVNEIPAGSNHKIEWNRKLAAFQLD
                     RVEPAIFAKPTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGE
                     VDDKIVCVPADDRNNGNAYKTLADLPQQLIKQIEFHFNHYKDLKKAGTTKVESWGDAE
                     EAKKVIKESIERWNKQA"
     gene            complement(15928..16386)
                     /gene="nudB"
                     /locus_tag="ACFOCA_000512"
     CDS             complement(15928..16386)
                     /gene="nudB"
                     /locus_tag="ACFOCA_000512"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008828 - dATP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019177 - dihydroneopterin triphosphate
                     pyrophosphohydrolase activity [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HFC6987276.1"
                     /translation="MPMAKPLKYPVSALVVLYSGDGGILLIERTHPEGFWQSVTGSLE
                     PGETVAQTARREVWEETGILLADGQLQDWHDSTVYEIYHHWRHRYPKGVFENREHLFS
                     AEIPRDTPIALQPEEHVSYGWFGLEEAAEKVFSPSNRRAILELGRFLGKR"
     gene            16597..16673
                     /locus_tag="ACFOCA_000513"
     tRNA            16597..16673
                     /locus_tag="ACFOCA_000513"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16631..16633,aa:Pro,seq:ggg)
     gene            16831..18657
                     /gene="mafB"
                     /locus_tag="ACFOCA_000514"
     CDS             16831..18657
                     /gene="mafB"
                     /locus_tag="ACFOCA_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
                     /protein_id="HFC6987277.1"
                     /translation="MGISRKISLILSILAVCLPMHAHASDLANDSFIRQVLDRQHFEP
                     DGKYHLFGSRGELAERSGHIGLGKIQSHQLGNLMIQQAAIKGNIGYIVRFSDHGHEVH
                     SPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIY
                     SYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSG
                     NAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAVMHGLGLLSTENKMARIN
                     DLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFTAVIPVKGIGAVRGKYGLGGI
                     TAHPVKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRNIRSNLEQRYGKENITS
                     STVPPSNGKNVKLADQRHPKTGVPFDGKGFPNFEKHVKYDTKLDIQELSGGGIPKAKP
                     VSDAKPRWEVDRKLNKLTTREQVEKNVQEIRNGNKNSNFSQHAQLEREINKLKSADEI
                     NFADGMGKFTDSMNDKAFSRLVKSVKENGFTNPVVEYVEINGKAYIVRGNNRVFAAEY
                     LGRIHELKFKKVDFPVPNTSWKNPTDVLNESGNVKRPRYRSK"
     gene            18660..19124
                     /locus_tag="ACFOCA_000515"
     CDS             18660..19124
                     /locus_tag="ACFOCA_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987278.1"
                     /translation="MAIWNYRYYLISSAAIRNKFNANKDIILDEYRSNGFQNFNENKS
                     FENYFIDNDVILLSIINEAKKQLKLKESWDKDAIMFCDNFGNSLTVWPDDIECELDLR
                     FDYTKFIQKTIDWAIKYNCLLVIEKTGNVVSPNINNLMYEIKAYLESKPWPI"
     gene            19349..>19472
                     /locus_tag="ACFOCA_000516"
     CDS             19349..>19472
                     /locus_tag="ACFOCA_000516"
                     /inference="COORDINATES: protein motif:HMM:NF012755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HFC6987279.1"
                     /translation="MWYEANIGLINTMSRSNQAGTRLLYSNYGLLYITTDHYISA"
BASE COUNT         4290 a         4612 c         5738 g         4832 t
ORIGIN      
        1 tgtcagaggc gagaaatacc ggaataaaaa attcaaacgg aaaatatata gtctttattg
       61 attcggatga ttttattaat tgtcaggtct tgctggattt tcttagtaaa gatgatattg
      121 atatgccgga tgtggttttt ttaaatgcag ttaaatatga taagggaagt gtttcatatt
      181 ttggcgaaga ttatcagcct gaaaaaatac tcaatcaatc caaagtcgaa gttttgaaag
      241 gattatgccg atttagaaaa tttccgggtt cggcgtggaa taagattata aaaagagaat
      301 tgattattaa agaaaaactg ttttttgaaa agggaattta ttctgaagat gtcgaatggt
      361 caatgagatt atttaatgcg gcaacaactt tttcttattt ggacggttgt tattactatt
      421 atcggcaggg aagagaagat tctattacgg gaactgtttc ggaaaaaagt ataaagtcat
      481 tattatatat tttggagaaa aatgcggaaa tggaatttaa tagggatata tcaagttatc
      541 tttattcttt tctttcctac gaatatctcg ttttgctttt tatcatgacg agtaaaaata
      601 tagcgtgtga tgctgatata aaaagaaggg cgtatcattt aaggtttatg ctgttaaagt
      661 ccaataaatt gatatataag ctgatattcc cgataatcac attattcggg gttgatatta
      721 caggcaggat tttaaaagca atcaggggga atatttaata aatcctttaa cactatacat
      781 cttaccgaag gaggaaaaat gaacgcaatc cgaactttcc aaaaccgcac gcccgaaatc
      841 cacgaaagct gtatgataga cgaagcgtgc gtcgtcatcg gcgaagtgtc gcttgccgaa
      901 gacgtttccg tgtggccgtg cgccgtgttg cgcggcgatg tgaacagcat caccgtcggc
      961 gcgcgcagca atatacagga cggcagcgtc ctgcacgttt cccacaaaac cgccgccaaa
     1021 cccgaagggt cgccgctggt tatcggcgaa gacgttaccg tggggcacaa agtgatgctg
     1081 cacggctgcc gtatcggcaa ccgcgtcctg gtcggcatgg ggacgacggt tctggacgat
     1141 gccgtgattg aggacgaagt gatgatcggc gcgggcagcc tcgttccgcc gcgcaaacgt
     1201 ttggcgggcg gctaccttta tgtcggttcg ccggtcagac aagtgcgcgt gctgaccgat
     1261 gaggaaaaag cctttttgaa atattccgcc gcgcattatg tgaagctgtc gaaacagtac
     1321 gggatgtgaa atcacatcgg cgttcctacg tcagccccaa attcacgcgg acgagatgcc
     1381 cgataacggt atccgatgcg ccttgatttt gaccgtctgc gtttgagttg caggcaaaaa
     1441 tgccgtctga agcccttttt tcgggtttag acggcatttt attgccgatt gttttttaaa
     1501 gtttgaccga atgttcgcgc gtttcgtgga acacgatgtc cggccaacgt tcttgcgtca
     1561 accccaaatt cacgcggttg ggggcgaggt aggcgaggtt gccgcccgcg tcgatggcga
     1621 ggttgcccgc gttggctttt tcaaactccg ccagtttttt cttgtcgtcg cacgataccc
     1681 agcgcgccga ccagatggat gcgctgtcga acacggcttc tacgccgtat tcgttggcga
     1741 ggcgcgaggt tacgacttca aactgcaaca cgccgaccgc acccaaaatc aaatccgcgc
     1801 cgctcatcgg tttgaacacc tgtaccgcgc cttcttcgcc aagctgttgc aaaccttttt
     1861 gcagttgctt gattttcagc gggtttttga tgcggacgct gcggaacagt tcgggcgcga
     1921 agaagggaat gcctgtaaat gccagttgtt cgccttcgga gaagctgtcg ccgatttgga
     1981 tgttgccgtg gttcgggatg ccgataatgt cgccggcgta ggcttcttca accagctcgc
     2041 ggtcgtggga catgaaggtt accacgctgg aggcggcgat ttcgcggttg atacgcaggt
     2101 gtttcatttt catgccgcgc tcgaatttgc cggagcagac gcgcaagaag gcaatacggt
     2161 cgcggtgttt cgggtccata ttggcttgga ttttgaagat aaatccggaa aacttcggct
     2221 cgtccggctc gaccatacgc acggtcgcat cgcgtggttt cggcgcgggc gcccattcaa
     2281 tcaatgaatt gaggatttcc tgaataccga agttgttaat cgcagagccg aagaatacgg
     2341 gcgtgagttc gccggcgagg aattcgtcga gattgaactc gttggaagcc gcctgcacca
     2401 attcgatttc gtcgcgcaac tgttggattt ccaatggaaa gcgttgttcc aattcgggat
     2461 tgtctatgcc tttgatgatg tcgaactcgt gcggcaggcg ttcgccgccc gcttcaaaga
     2521 gatagatttc gtcgttcagg atgtggtata cgcctttgaa gtttttgccc ataccgatcg
     2581 gccaagtaac gggcgcgcag cggatttgca ggatgttttc cacttcgtcc aagagttcca
     2641 gcgaatcgcg cacttcgcgg tcgtatttgt tcataaacgt aacaatcggc gtatcgcgca
     2701 ggcggcagac gtttaagagc ttgatggttt gcgcttccac accttttgcc gcgtcaatca
     2761 ccattaatgc gctgtccacg gcggttaaaa cgcggtaggt gtcttcggag aagtcttggt
     2821 gtcccggcgt gtccaagagg ttgacggtgt ggtctttata gtcgaactgc atcacgcttg
     2881 atgccacgga aatgccgcgc tgcttctcga tttccatcca gtcggaagtg gcgaatttgc
     2941 cggttttttt gccttttacc gtacccgcgc tttgaatcgc gcctgaaaac agcaagagtt
     3001 tttcggttag cgtggtttta cccgcgtcag ggtgggagat gatggcaaac gtgcggcggc
     3061 ggcgcacttg gtcgaggatt tcttgggaca tggttttctt tgcaaaaagg ttcaggccgc
     3121 ttttcagacg gcccggacag tgtttgagac ggcgaaattg tacaaaaaaa tgcctgataa
     3181 ttcaatgttg gaggcggtca gtgcgtgctg ccgtaaatct ctttttcgtc tttcaggacg
     3241 gcatcggcgg tttcccacgc gctgccacgc cagactttgt aaaagcagct ttctcgcccg
     3301 gtgtggcagg cgatgccgcc gttttgggcg atgagcatca caatggcgtc gccgtcgcag
     3361 tcgaggcgca gttcgcggac tttttgcgtg tgtcccgact cttcgccctt catccattgt
     3421 ttttggcgcg aacggctgta atagtgggca aagccggttt cgacggtttt ttgcagggct
     3481 tcggcgttca tccacgccac cattaaaata cgtttggttt cggcatcttg ggcgatggcg
     3541 caaaccaaac ctttttcgtc aaatttgacg gcttcaagca ggtttttatc catatttcct
     3601 ttcagacggc atggtcgggg cggtcagagg cgcacttcga tgccggcttc gcgcatagcg
     3661 cgtttggctt cgcggatggc gatttccccg aaatggaaaa cgccggcggc aagtacggca
     3721 tcggctttgc cttcggttat gccttcaatc aggtgccgga cattgccgac cccgccggag
     3781 gcgatgacgg ggatgtcgac ggcttcggca acggcgcggg tcagcggcag gttgaaaccc
     3841 tgtttcgtac cgtccctgtc cataccggta agcaggattt cgcccgcgcc gcgtttttgc
     3901 atttcgatcg cccattccac cgcatccaaa ccggtcggat tgcgcccgcc gtgggtaaag
     3961 atttcccagc gtgtgttttc ggggttgacg gctttggcat cgacggcggc gacgatggct
     4021 tgcgaaccga aaaatccggc ggcttcgtta attaaatcgg gacaggtaac ggcggcggtg
     4081 ttgatgctga ctttgtccgc gccggcattg agcaggcggc ggatgtcggc aacggtgcgt
     4141 acgccgccgc cgacggtcag cgggatgaag acttgtccgg caacctcttc gatgatgtgc
     4201 aggatggtgt cgcggttgtc ggatgaggcg gtgatgtcga ggaaggtcaa ttcgtccgcg
     4261 ccttcgccgt tgtagcgttt ggcggcttcg acggggtcgc ccgcgtcgcg caaaccgatg
     4321 aagttcacgc ctttgacgac gcgtccgtct tttacgtcga gacaggggat gatgcgtttt
     4381 gccagtgcca taatcggatg cctttagtcg agggaatctg ccagttgctg cgcttgggca
     4441 aaatcgatgc tgccctcgta aatcgcgcgg ccggtaatcg cgcctgctac gccatgtttt
     4501 tcggcggcac acagggcgcg gatgtcgtcc aagccggtca gtccgccgga ggcgatgacg
     4561 ggaatgcgga cggcttgggc gagtttgacc gtcgcgtcga tgttcacgcc gctcatcata
     4621 ccgtcgcgcc cgatgtcggt gtagatgatg ctgttgacgc cgtcgtcttc aaagcgtttt
     4681 gccaaatcaa ttacatgatg cccggttacg gttgcccagc cgtcgatggc ggccataccg
     4741 tctttggcat ccagcccgac aataatcctg ccggggaagg ctttgcacgc ctcgcgcacg
     4801 aagtcggggt ttttgaccgc cgccgtgccg ataatcacgt cgttcagacc caaatccaaa
     4861 tattgtccga tggttttcaa atcgcgtatg ccgccgccga gctgtacggg gatgtctttg
     4921 gcgacggcgg caaggatgtc tttgatggcg ggcaggtttt gcggaacgcc ggcaaacgcg
     4981 ccgttcaaat ctaccagatg caggcggcgc gcgccttgtt tgaaccagtg cagtgcggtt
     5041 tcggcgggcg aatcggaaaa gacggtcgcc tcttccatca gcccttgtct caggcggacg
     5101 cagcgtcctt ctttcaaatc gatggcgggt atcagcagca taatttttct ccttgtgcgg
     5161 ggccgtgtcc ggcttaccag tttaaaaagt ttttcaacat cgtcagcccg gcatcgtggc
     5221 ttttttcggt gtgaaattgc gtggcgaata cgttgtcttt gccgacgatg caggcaaacg
     5281 gggacgggta gtcgctttcg cccaatatgg tttcgggatt ttcgggggcg aaatagtagc
     5341 tgtggacgaa gtaaaaacgc gtgtcttggg gaatatcttt aaacagcggg tggttttggg
     5401 tttggcgcac ggtgttccag cccatatgcg ggactttcag acggcatccc tgcgggtcgc
     5461 ggaggtcgcg ctcaaagcgt ctgactttgc cgccgaacca gcccaagccg tcggtgtttc
     5521 cttcttcact gtggtcgaat aaaagttgcg cgccgacgca gattccgaaa aagggtttgt
     5581 tttttaaggc atctttgact gcctcgtcca ggccgccgcg cgtcagtgcc gccatacagt
     5641 cgggcatcgc gccctgcccg ggaaaaatga ctttgtcggc gcgggacacg cgttcggggt
     5701 cgccgcttaa aaagatttcg gtattttttc cggcaagctg ccccgccgtc cggacggatt
     5761 tcaatacgga atgcaggttg cccataccgt aatcgataat ggcgatttgc atggcttcct
     5821 cctctttttt tgcaatatgg ctgcgatttt aacaaacaaa tgtgccgtgc tgataaaaat
     5881 gccgtctgaa aacgggagtc tgtcttcaga cggcataggg tttaaacccg gaaagccgtt
     5941 tgtcagcctt ccatttgttt tgcctgaacg gcagtcaggg cgatggtgaa cacgatgtct
     6001 tccaccagcg cgccgcggga gaggtcgttg accggtttgc gcaggccttg cagcagcggg
     6061 ccgacgctta agacgttggc actgcgttgg acggctttat aggtgcagtt gccggtgttc
     6121 aggtcgggga agaccaaaac ggttgcctgt cctgccaccg ggctgcccgg agctttggat
     6181 ttgcccacac ccggcacggt tgccgcatca tattgcagcg ggccgtcgat ggcgaggtcg
     6241 gggcgttttt cccgggcaag tttggttgct tcgatgacgg tatcgacatc ggggccgctg
     6301 ccggagttga cggtggagta ggaaatcatc gccactttcg ggtcgatgcc gaaggctttt
     6361 gcggaatcgg cagactggat ggcgatgtcg gcaagctgtt gcgcggtcgg gttcggatta
     6421 accgcgcagt cgccgaagac gaggacttgg ttgggcagca gcataaagaa tacgctggac
     6481 acgaggcttg cgcccggtgc ggttttaatc agttgcaaag cggggcggat ggtgttggcg
     6541 gtggtgtgaa ccgcaccgga taccaaaccg tccacatcat tttgcgccat catcatcgta
     6601 ccgagtacca cggtgtcttg cagttgcttg cgcgcgtctt cgggtgtcag gcctttggat
     6661 ttgcgcagtt cgcacatcgg ctcgacgtat tgttcgacca atgaggcggg atcgatgatt
     6721 tccaaagagt cgggcaggct gatgccgcgt tctttggcaa cggcttcgac ttcttcgcgt
     6781 ttggcaagca ggacgcagcg ggcaatgcct ttttcgtggc agatggcggc ggcttggacg
     6841 gtgcggggtt ctgcgccctc aggcaggacg atgcgtttgt cggcttggcg ggcgaagtcg
     6901 atcaggttgt agcggaattg cgccggcgac aggcgttttg cttcgcggcc tgccaatacg
     6961 gatacgtctt tcagcgcgtc gctcgaaccg aagaaggtca ggccggtttt ttcggctgcc
     7021 gcttcggcaa cggaggctgc cgcgccgtcc acgacaaaac cttccaatac gcccggcgcg
     7081 gcggcgaaga actgtttggc aaggttcagc cgatttgcca gttcgtcggc atcggcgttg
     7141 tcggaacgga cggcgaagac ggctgccgcg tcaagggaca atgccagttc gacgtttttg
     7201 cctgcgaggt agattttgtc ggcatcgggc gcgatgcctt cgatgacgag gttggcggca
     7261 tcgagtgcgg caactttgcc gaccagtgcg tcgaaccagt cgtcgctttt gccttgcgcg
     7321 agcagggttt cggcggttgc gtcaacggct tggaaaattt gtgcgtccag tgcttttgca
     7381 aaggcttgtg cggcggcgga ggcgtccagt ccggcagata cgggtacgat gagtactttt
     7441 gccatgatat atcctttcgt atgctgcggt gtgcggcata tgtggttgga aggggcggca
     7501 tataggcaga aacggctgcc tgcgtgccgt gcgtgccgtg tttggcttga ggcgcgcagg
     7561 ttgaatatag caaacaaatt ctgtttccaa caagataaat atccgcaggc ttgtggatgc
     7621 tgccgccttt cagagggtat ttccggggaa gaacagggcg ggaccgtcca aatggaggac
     7681 ggcggaaatg ccgtctgaca gggtgggggc ggaagggagg ttgagcgtga ggacggtttg
     7741 tccgactcgg agactgattt cggtatgccg cgctttgggc gtggttttga gaaccacggc
     7801 gtgaatggag gcggtgggtg cggaatgggg gtgaaggctg aactgttccg gacggatgag
     7861 cagtgtgccg cgtgtgcctg cgggtgcgcc gctttgaacg ggcaggcggc ccaatccgca
     7921 atcggcggtg ccgtcggcgt tgagcgcggc ggggaacacg atgccttcgc cgataaacag
     7981 ggcggcatca aggtcggcag gttgtcggta caattcgtga gggcttgcag tttggaggat
     8041 gcgcccctgt ttcatcacgg caatccggtc ggcgtattgc agggcttctt cgcggtcgtg
     8101 gctgacgaaa acggcagatt tgccgttggc gcgcagggcg gcaatcatgt cttcgcgaat
     8161 ctggcggcgc aactgttcgt ccagcgcgct gaagggttcg tccaacaaaa tcagttcggg
     8221 atcgggtgcg agggcgcggg cgagggcgac gcgctgttgc tgtccgcccg aaagttcgtg
     8281 cggatagcgt ccggcaagtt cggaaatgcc ggtcaattcc aacatagctt cgatgcgctg
     8341 ccgctcttgc gccgtcttgc ctttgccgtt gcccagcccg taggcggtgt tgcggtaaac
     8401 ggtcaggtgg gggaacagta cgccttcctg tacgacataa cccaaacggc gttcgcggac
     8461 ggggaggttg gtatttttcg agaagatggt tctgccggaa agcgaaattt cgccaaaatc
     8521 gggttgttca aaaccggcaa ggcagcgtaa aagggtggtt ttgccgcagc cggacgcgcc
     8581 gacgataaag aggatttcgc ccgggtcgag gctgagcgaa atgtcgttta aaaccggggt
     8641 gttttgaaaa cttttggaca ggtgtccgat gtgcagggcg gcggtcatgg cggtacttcc
     8701 tcaagctgtt atttgaaggc gtatttcttc agcaggaata cggggatgcc ggaaaataat
     8761 accagcatca gcgcgtaagg ggtggcggcg gcgtattgtg cgtccgatgt gtattcccaa
     8821 acggcggtgg agagtgtgtg gacatcgtcg gtggtcagca gcagggtggc ggtcagctct
     8881 ttcatcagtt tgaggaagac gagtgcgaat gcggcggtaa tgccgggcag gatggacggc
     8941 agtaccaacg tcctgaaaat aaagaagtgt ccgcgcccca atgttgcgcc gacctgttcc
     9001 atccctttgg ggagttgttc caaggaagtc ctcagggtgg tttgcgccat cggcaggtaa
     9061 agcatgaaat aggcaaggat gacgacgata aaggtttggt aaacggcagg ggtgtagttg
     9121 atgctgaaat aaaccaagga tagggcgata accaaaccgg ggacggcgtg cagtaaaaac
     9181 ggcagcctgt ctatccaaac ggttaaaaaa ttgcgatagc gaaccgatgc ccaaacaagg
     9241 ggcaaggcac ataatatagt caaaatcgca cctaaagccg atacgcttaa ggaacggata
     9301 aaggcatcaa atacggatac gagcgcgaat gtgccggaag tgccgaccat catccaatgt
     9361 atcaatacgc caaaggggat aataatgccc aaagtcaaca agctgcttaa aaaaacaatc
     9421 gcgccaatct gaccgggcag tttgagggtt ttgacgggat aaggacgggc aacgcctttg
     9481 ccgctgtggt aaatcttggc tttgccgcga aatatgcttt ctccaaatac gacgatgccg
     9541 cacaccgcca ttaaaacagc ggaaagcagg gcggcggtat tgttgttgta ggacatttcg
     9601 tattcttgga aaatggcggt ggtaaaagtg gggtagttca aaatagatac cgcgccaaat
     9661 tcgaccagca tatgcagggc aatcagtaac acgctgctgc cgatggcggg tttgagctgg
     9721 gggaggatgg cggaaaaaaa ggtttgcagg cggcttttgc ccaaggacag gctgacttct
     9781 tcgtaagaca ggctgatgcg tttgagtgcc gcctcgacgg gcaggtaggc gagcgggaac
     9841 gaggacaggc tcataatcat cactgtcccc caaaagcctt cgacacggaa ggtcaggctg
     9901 atccaggtga aacagctgac aaatgcgggg atgcacaaag gcagggtgat tgccgtctga
     9961 aaaaaggttt tgccgaagaa gcggtaacgt tggaacaaaa gggcgcaggc aatgcccaaa
    10021 acaatggaaa tcagggtaac gcccgccatc atcgtcaagg tgttggagag caaatcccac
    10081 atacgcgggc ggaacaacag ttcgacggcg cggttgatgc cgacctgcca cgaacgcata
    10141 gcgacatata aaaaaggcag ggtaagcggt agggcaatca gtaggatgag gccggtaagc
    10201 caaatgggta tttttttagg agacatagtg ttttttatcg gcaaaacggg cggacagtat
    10261 aaatgtccac ccgtttgaca atccgaaaac ggcttatttc ataccggctt gctcaagcag
    10321 ccgggtggcg tgttcttttt cggaaacagt ggtggcggac acttggggtg cttccaactt
    10381 ggcgatgggt tccaaattga aagtggatac cacgtgcgga ttcaaaggat attcggcacg
    10441 gacggcggtc agggcgcgct gtccttcctt gctggcgagg aaggcgacga attttttcgc
    10501 ctcatccttg ttttgggagg attttaacac ggctgcgccg gaataggtaa cgagtgcgcc
    10561 gggatctctg tggcggacga aattcaggcg ggtgtggaca ttttgtacgc ctttttcacg
    10621 cgcaaaagcg tgccagtagt agttgttgat gagggcggca tcgatttcgc cgttttcaac
    10681 cgcttgaagg gcgacggagt ttttagcgta aggcttgccg tattctttca gacctttgag
    10741 ccatttcaat gcggccgctt cgcctttcag tttgacgatg gcgacaacct gttccaagaa
    10801 cgcgccggaa gtgggggcgt aaccgatgcg gtttttccat ttcggcgtgg cgtaattcag
    10861 gacggatttt tccaaatctt tttcagacag tttgcgggtg tcgtaaacga cgacgcgcga
    10921 acgtccgctc agtgccaccc agtctttttt ggcggcaacc ggcacgccct tgccgcgtgt
    10981 ttcgttgatg gtggaggcgg gcaggggctc taggaggttg gctgcggaaa gggtggcgag
    11041 tgccgggatt tgttcggaat agaatacgtc ggcggggctt cggctgcctt cttctttgat
    11101 ttgaccggca agctggtcgc ctttggcgct gttgagtttg actttgatgc cggtagcccg
    11161 ggtaaaggca tctgcaacgg cttgtgccgc ttctttgtgt tggccgttgt acacggtaat
    11221 gtctgccagc gcgggggttg cggcggtcag ggctgcggca agcagtgcgt atcggataga
    11281 tgttttcata tcgattttct cctaatgaat gagagtgtac accttgttaa gacataacgg
    11341 cgtgtagtgt attccttctt ctttataaat gcaaataatt attttttaaa tttgttatta
    11401 tccgatccgg ttatggtttg ttctgacttg tattttttcc gtgcatcgcg cccgtaaggc
    11461 ggaagcggcg ggcaatgcgt ggcggaatgt gggtaaaggc ggcattttga tttgtcggaa
    11521 tgcttgagaa cccctctctt taaaacagcg tctgaacagg gttgccggaa tagtattgcc
    11581 atcccggcag atacagtttg tcggggtctt gccaatattg ttcatccaga ctgttcggca
    11641 gtgaggcggt tttgttgtcg agatgttgcg ttatatccca catttctttc aggtttttac
    11701 cttccgattg gaggtggcgg atttcttttc ccaatgcgtc tgccgcccga tggatcagca
    11761 ttgcgctgtg taccgcgccg atttttttca gaacggaaca agtcttttcg gcggcgggga
    11821 aactccagtt gcagacaaat tgcagtatgc tgccgttacc gatatcggct tctgtccgcc
    11881 aaatcaaaac cagctcctgt tcccgcccgt ccatgctttc gagtttgccg tcatgctgtt
    11941 caaaaagttt gtccaccgcc tgccacatca tctgttcgaa gcggtcggct tgggtatccg
    12001 tatcggtcat cgtgttcttg ccttttaaaa atgccgtctg aacatttctt cagacggcat
    12061 ttgggggtta agccaacatt tcccgccagc gtttcacttg gaagcggact tgttccggcg
    12121 cggtaccgcc caagtggttg cgggcgttta agctgccttc gggtgtcagc acgccgtaaa
    12181 cgtcgtcggc aatcaaatcg ctgaaacctt gtaagacttc gagcggcagt tcgctcaaat
    12241 cgacgcccgc ttggtcggcg tggcgcacgg cttgggcgac gacttcgtgg gcatcgcgga
    12301 aaggcatgcc ttttttgacc agataatccg ccaagtcggt ggcggtagcg aagccctgca
    12361 tcacggcggc gcgcatattg tcgggtttga cggttacgcc gcgcatcata tcggcgtaaa
    12421 tccgcaacgt gtcgataagc gtgtcggcgg tgtcgaacaa gggttctttg tcttcctgat
    12481 tgtctttgtt gtacgccaag ggttgggatt tcatcagggt aatcagaccg ataaggtgtc
    12541 cgatgacgcg gccggatttg ccgcgcacga gttcgggcac gtcggggttt ttcttctgcg
    12601 gcatgatgga cgaacctgtg cagaaacggt cggcgatgtc gataaagccg aaacgcgggc
    12661 tcatccacaa aatcaattct tcagacaggc ggctcaggtg aaccataacc agcgaggcgg
    12721 cggctgtgaa ctcaatggcg aaatcgcggt cggatacggc atcgagcgag ttctggcaga
    12781 tttgttcaaa gcccaatagc tcggcggtga tttcgcgctg aatcgggtag gtcgtcccgg
    12841 caagggcggc tgcgccgagc ggcatacggt tgacgcggca gcggcagtcc gccatccgtt
    12901 cgttatcgcg tccgagcatt tcgacgtagg cgagcatatg gtgtccgaag ctgacgggct
    12961 gggcgacttg caggtgggta aagcctggca tgacggtttc ggcgttttgt tccgccaaat
    13021 ccagcaatgc cgtctgaagg ctttgaatca ggctttgtat aacggtaatc tggtcgcgca
    13081 gccacaggcg gatgtcggtg gcgacttggt cgttgcggct gcggccggtg tgcaggcgtt
    13141 tgcccgcgtc gccgattttg tcggtcaggc ggcgttcgat gttcatatgg acatcttcca
    13201 aatcggacga ccattcgatt ttgccgctgc ggatttcttc gaggatttcc gccatacccc
    13261 ggcggatgtc cgccaaatcg ccttcgtcca acacgccggt ttctttcagc atttgcgcgt
    13321 gtgccagcga gccttggatg tcccattcgg caagccgtcg gtcgaaaccg atggaggcgg
    13381 tgtattgttt gacgagttcg gaaacgggtt cgttgaaacg tccggaccag gttttgtcgt
    13441 gcataaggat tccttgatgg ggttattcgg tgcggtattt ttccaaaagc cggcggaagg
    13501 gttcgccggt ttcgggatgt ttcagaccgt aggcgacggt ggcttcgagg tagcccagtt
    13561 tgctgccgca gtcgtagcgc gtaccttcaa aggggtgcgc caggacaaat tcgtgatcga
    13621 gcagcttggc gatgccgtct gtaagctgga tttcgttgcc cgcgccgcgc ggaagattgg
    13681 ttaagaggtc gaaaatgcgc ggggtgagga tgtagcgtcc aacaacggca aggttggagg
    13741 gcgcgtcttc gggcttgggt ttttcgacaa tgccgataat gcgttggaac tgtttgagct
    13801 gttcggtttc gacgatgccg tatgagccgg tttgcgacgg ttcgacggtt tctacgccca
    13861 aaatgctgtt gccgctgcgt tcgtacactt caatcatttg tttgagcgcg ccttttgggg
    13921 catcgattaa atcgtcagcc aaaatcacgg caaagggttc gtcgccgatg gcggcgcggg
    13981 cgcacaagac ggcgtgtccc aagcccagtg cttccgcctg acggatgtag aggcaggtaa
    14041 tgttcggcgg caggatgttg cggacgtgtt ccaacaattt gtctttatgg cgcatttcca
    14101 actcggtttc gagttcgtat gccttgtcga aatggtcttc gatgctgcgt ttgttgcgtc
    14161 cggtaacaaa caccatttcc gtgcagccgg cttccacggc ttcttctacg gcgtattgga
    14221 tcagcggctt gtcgacgatg ggcagcattt ctttcgggct tgccttggtg gcgggcagga
    14281 agcgtgttcc catccctgcg acggggaaaa cggctttccg tatgggtttc attctttttc
    14341 ctttgtattg ttttgatgtt taaagggcga gtttgcgtaa gagttcggca agtgcctgcg
    14401 cgcggtggct ttcgcggttt ttgacctccg aatccaattc ggcggcggtt ttgccgtgtc
    14461 cgggcagata aaaatacggg tcgtaaccga aaccgttttc accggcggga acgccgttcc
    14521 attgtccgtg ccatacgcct tcggcaataa tcggacgcgg gtcgtcttta tggaggacaa
    14581 aaaccaatac gcagacgtag caacagcttt tgtcggcttt gccgacaagt tcggcggcaa
    14641 gtttcaggtt gttggcggta tcggatttgg gattgtcgcc cgcgtaacgt gcggaatgga
    14701 tgcccggcgc gccgtttagg gcggcggcac agatgccgct gtcgtcggca agcgcgggca
    14761 gcccgctgta ttcggcggca tggcgtgctt ttgccagcgc gttttcgaca aaggtgggat
    14821 agggttcggg gcattcgggt atgccgaatg cggattgcgg caatacggtg atgctgtaag
    14881 gtttgaataa gttgccgaat tcttcgagct tgccggcatt gccgcttgcc aaaacgattt
    14941 tttccggttt ttcagacata gcggttttcc tttgcggcgg attgggcggc gcgtagggat
    15001 ttgtgccgca ggtagagggc gaggctgccg atttgtccga acagtgcgcc gaatgcgaaa
    15061 aaaaaggagg cgacggcgaa ggctttgctg ccgacggtca gcagataagc acccaagagg
    15121 acgagcagca taaatgccag tgtgaagagg gcaacagaca acagatagat ttttcggcgg
    15181 ttcatggcgt tcggtcggaa acggtatgtt cggattatag ccgattggga cggtattccc
    15241 tagagcttgg aaaaatgccg tctgaagcgg cgttcagacg gcagggagag cgttatgcct
    15301 gtttgttcca acgttcgatg gattctttga tgactttttt cgcttcttcc gcatcgcccc
    15361 acgattcgac tttggtcgta cccgcttttt tcaggtcttt gtagtggttg aagtggaact
    15421 cgatttgttt gatgagctgt tgcggcaaat ctgccaaagt tttgtaggcg ttgccgttgt
    15481 tgcggtcgtc ggcaggaacg cagacgattt tgtcgtccac ttcgccgtcg tcaacgaatt
    15541 tcatcacgcc gataacgcgc gcttccaaga atacgccggt tgccaaaggt tgttcggtaa
    15601 cgagcagcac gtccaattcg tcgccgtctt cgtccaaagt ttggggaatg aagccgtagt
    15661 tggtcggttt ggcgaagatg gcgggttcga cgcggtcgag ttggaatgcg gcgagtttgc
    15721 ggttccactc gattttgtgg ttgctgccgg cggggatttc gttgacgacg ttgatgatgc
    15781 cgccgtccac atcgccgggg gtcaggattt ggttgaagtc tgccatttgg tttcctttgt
    15841 ttgggaaagt ttgaagtttg aaagtatagc acaaacgtcc ggctgaaaat gcgcccgatg
    15901 ccgtctgaaa gggtgtacgg gcgcgtgtta ccgtttgccc aaaaacctgc ccagttccag
    15961 aatcgcgcgc ctgttggacg gggaaaacac tttttccgcc gcttcttcca agccgaacca
    16021 gccgtaggag acgtgttctt cgggttgcag ggcgatgggc gtatcacgcg ggatttcggc
    16081 agagaagagg tgttcgcggt tttcaaacac gccttttgga tagcggtgcc gccagtggtg
    16141 gtagatttcg taaaccgtgc tgtcgtgcca gtcttgaagc tgcccgtccg ccagcaggat
    16201 gccggtttct tcccaaactt cgcgccttgc cgtttgggcg acggtttcgc ccggttcgag
    16261 gctgccggtt accgactgcc aaaatccttc cggatgcgtg cgttcgatga gcaggatgcc
    16321 gccgtccccg ctataaagga cgaccagtgc ggaaacgggg tatttgagcg gttttgccat
    16381 cggcatcttt cggcgggctg cggtaatgaa ggggcggatt atagcaaacg ccgcacgtta
    16441 tggcgtttat ccttttccgt atcctttttt ctgcacggat gggacgcgcc ggtgtttgcc
    16501 ggtaaatttt ccgttgtgtc aaaaagataa gggcggttgt gattttaatg cttgccaaag
    16561 cgtcgggcgg aaactataat ccgaaactta tcgagtcgga gtgtggcgca gtctggtagc
    16621 gcacttgcat ggggtgcaag gggtcgaagg ttcgaatcct ttcactccga ccaaaaattc
    16681 cgaaagccgc tttcaaaagc ggcttttttg ccgtccgtat gattatgatg tagagtacgc
    16741 ggcgacagac attcaaatgc cgtctgaaaa ccgttcagat ggcatctctt tatcttagtt
    16801 tcattccgta ccatcttaag gaacatcaaa ttgggcattt cccgcaaaat atcccttatt
    16861 ctgtccatac tggcagtgtg cctgccgatg catgcacacg cctcagattt ggcaaacgat
    16921 tcttttatcc ggcaggttct cgaccgtcag catttcgaac ccgacgggaa ataccaccta
    16981 ttcggcagca ggggggaact tgccgagcgc agcggtcata tcggattggg aaaaatacaa
    17041 agccatcagt tgggcaacct gatgattcaa caggcggcca ttaaaggaaa tatcggctac
    17101 attgtccgct tttccgatca cgggcacgaa gtccattccc ccttcgacaa ccatgcctca
    17161 cattccgatt ctgacgaagc cggtagtccc gttgacggat ttagccttta ccgcatccat
    17221 tgggacggat acgaacacca tcccgctgac ggctatgacg ggccacaggg cggcggctat
    17281 cccgctccca aaggcgcgag ggatatatac agctacgaca taaaaggcgt tgcccaaaat
    17341 atccgcctca acctgaccga caaccgcagc accggacaac ggcttgccga ccgtttccac
    17401 aatgccggta gtatgctgac gcaaggagta ggcgacggat tcaaacgcgc cacccgatac
    17461 agccccgagc tggacagatc gggcaatgcc gccgaagcct tcaacggcac tgcagatatc
    17521 gtcaaaaaca tcatcggcgc ggcaggagaa attgtcggcg caggcgatgc cgtgcagggt
    17581 ataagcgaag gctcaaacat tgctgtcatg cacggcttgg gtctgctttc caccgaaaac
    17641 aagatggcgc gcatcaacga tttggcagat atggcgcaac tcaaagacta tgccgcagca
    17701 gccatccgcg attgggcagt ccaaaacccc aatgccgcac aaggcataga agccgtcagc
    17761 aatatcttta cggcagtcat ccccgtcaaa gggattggag ctgttcgggg aaaatacggc
    17821 ttgggcggca tcacggcaca tcctgtcaag cggtcgcaga tgggcgcgat cgcattgccg
    17881 aaagggaaat ccgccgtcag cgacaatttt gccgatgcgg catacgccaa atacccgtcc
    17941 ccttaccatt cccgaaatat ccgttcaaac ttggagcagc gttacggcaa agaaaacatc
    18001 acctcctcaa ccgtgccgcc gtcaaacggc aaaaatgtca aactggcaga ccaacgccac
    18061 ccgaagacag gcgtaccgtt tgacggtaaa gggtttccga attttgagaa gcacgtgaaa
    18121 tatgatacga agctcgatat tcaagaatta tcggggggcg gtatacctaa ggctaagcct
    18181 gtgtctgatg caaaaccgag atgggaggtt gataggaagc ttaataaatt gacaactcgt
    18241 gagcaggtgg agaaaaatgt tcaggaaata aggaacggta ataaaaacag taactttagc
    18301 caacatgctc aactagagag ggaaattaat aaactaaaat ctgccgatga aattaatttt
    18361 gcagatggaa tgggaaaatt taccgatagc atgaatgaca aggcttttag taggcttgtg
    18421 aaatcagtta aagagaatgg cttcacaaat ccagttgtgg agtacgttga aataaatgga
    18481 aaagcatata tcgtaagagg aaataatagg gtttttgctg cagaatacct tggcaggata
    18541 catgaattaa aatttaaaaa agttgacttt cctgttccta atactagttg gaaaaatcct
    18601 actgatgtct tgaatgaatc aggtaatgtt aagagacctc gttataggag taaataaaaa
    18661 tggcaatttg gaattatcgg tactacctta tctcatcagc tgctatcaga aataaattta
    18721 atgcaaataa agatatcata cttgatgagt atcgatctaa tggttttcag aattttaatg
    18781 agaataaaag ttttgaaaat tactttatcg ataatgatgt tatattatta tcaataataa
    18841 atgaagcaaa aaaacagctt aaattgaaag aatcttggga taaagacgca atcatgtttt
    18901 gtgataattt tggtaatagt cttaccgttt ggccagatga tatagagtgc gaacttgatt
    18961 taagatttga ttatactaaa tttattcaga aaaccattga ttgggcaata aaatataatt
    19021 gtctacttgt aatagaaaaa acaggaaatg tagtttcccc taatataaat aatctgatgt
    19081 atgaaataaa agcatatttg gaaagcaagc cgtggcccat atgaaaccta aactcaacaa
    19141 gtaggatgtg tgcggaacgc acgtatgcgg ttctcaaggt ttgagctaag aggccgtctg
    19201 aaaacagaaa aactgtttca gacgaccttt cttttaacca gttgccacag caaccggaca
    19261 aaagcagcct acctccacat ccatataggc aatacagggg agatattttg taaattctac
    19321 gaatatttta cctgctaaac agggtaggat atggtatgaa gcgaacattg gcttaataaa
    19381 cactatgtca agatcgaatc aggctggtac tagattgttg tattccaatt atggattgct
    19441 atatataaca actgatcatt atatctctgc aa
//
LOCUS       DAXIFS010000018        17512 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.018, whole genome shotgun sequence.
ACCESSION   DAXIFS010000018 DAXIFS010000000
VERSION     DAXIFS010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17512
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.018"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(276..2204)
                     /gene="dnaK"
                     /locus_tag="ACFOCA_000517"
     CDS             complement(276..2204)
                     /gene="dnaK"
                     /locus_tag="ACFOCA_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFC6987280.1"
                     /translation="MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLD
                     GGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAW
                     VKAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGMDKGDNKDRKVAVYDLGGGTFDISIIEIANLDGDKQFE
                     VLATNGDTFLGGEDFDQRLIDHIIAEFKKEQGIDLKQDVMALQRLKEAAEKAKIELSS
                     GQQTEINLPYITMDATGPKHLAMKITRAKFESLVEDLIARSIEPCRTALKDAGLSTSD
                     IDDVILVGGQSRMPKVQEAVRDFFGKEPRKDVNPDEAVAVGAAIQGEVLSGGRSDVLL
                     LDVTPLSLGIETMGGVMTKLIQKNTTIPTKASQVFSTAEDNQSAVTIHVLQGERERAS
                     ANKSLGQFNLGDIAPAPRGMPQIEVTFDIDANGILHVSAKDKGTGKAANITIQGSSGL
                     SEEEIERMVKDAEANAEEDKKLTELVASRNQAEALIHSVKKSLADYGDKLDAAEKEKI
                     EAALKEAEEAVKGDDKAAIDAKTEALGAASQKLGEMVYAQAQAEAQAGESEQANASAK
                     KDDDVVDADFEEVKDDKK"
     gene            complement(2412..2684)
                     /locus_tag="ACFOCA_000518"
     CDS             complement(2412..2684)
                     /locus_tag="ACFOCA_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987281.1"
                     /translation="MKKTGKYLIYAAAFTAFCFAFQENRSEAKQPDITLSASLCEQFN
                     ILNAKDMDAEQVSLSKECDIIESSHDWEKEYGNLNEQEMLAGIVYE"
     gene            2870..3556
                     /locus_tag="ACFOCA_000519"
     CDS             2870..3556
                     /locus_tag="ACFOCA_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6987282.1"
                     /translation="METFKDRLVFLWKSEAKQAKIASDIEMTIAGFSRIWNEGGLPKS
                     ETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFVPRYDIRA
                     AAGYGQFVDHEEPVFTMAFRRHWIENYVTRNTKNLSVISVKGDSMEGVLNDGDSILVN
                     HSENTPRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNHPADDVEII
                     GRVEWFGRTI"
     gene            3688..4026
                     /gene="erpA"
                     /locus_tag="ACFOCA_000520"
     CDS             3688..4026
                     /gene="erpA"
                     /locus_tag="ACFOCA_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HFC6987283.1"
                     /translation="MSDESPIIFTDSCCAKVADLIAEENNPDLKLRVFVNGGGCSGFQ
                     YGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAET
                     TCGCGSSFSV"
     gene            4043..4189
                     /locus_tag="ACFOCA_000521"
     CDS             4043..4189
                     /locus_tag="ACFOCA_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987284.1"
                     /translation="MPSERSDGIFTFGKYIIGMNSHIIRLFEDESGFPKGTGGTVSGV
                     FVPL"
     gene            4186..4650
                     /locus_tag="ACFOCA_000522"
     CDS             4186..4650
                     /locus_tag="ACFOCA_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6987285.1"
                     /translation="MIEMSKDYRNDLYDVYVSYPPKVDCGLIRECLRENLGEEKAEGL
                     IESLDSKPQVLVEEKCTWEKRAELHDYFSYLGLDIITRRYMELETVVPPEEGEGEGEG
                     GDGEIPEYLELHSEWEDDISAPSQAEPPPRNIKPLVFGLLIAFLGYLLGKIF"
     gene            4685..6196
                     /gene="ubiB"
                     /locus_tag="ACFOCA_000523"
     CDS             4685..6196
                     /gene="ubiB"
                     /locus_tag="ACFOCA_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HFC6987286.1"
                     /translation="MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSK
                     LKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLS
                     REQIEKSLGQSIEKLYAEFETEPVASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQ
                     DLSLMRFGAVWVERLFADGKRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFQNS
                     NMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFR
                     DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA
                     HIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQ
                     LVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPDWAQ
                     IIPSLPRKISALIDENRQQEMRDAYIHLVKVQQRQSLWLAVIAVVLLLILLLK"
     gene            complement(6553..7371)
                     /gene="cysE"
                     /locus_tag="ACFOCA_000524"
     CDS             complement(6553..7371)
                     /gene="cysE"
                     /locus_tag="ACFOCA_000524"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFC6987287.1"
                     /translation="MKKDHLNTTGFDLWHTIREETAAAVSAEPMLASFLHQTVLRHES
                     LGSVLAYHLSSKLGSPIMDVRALFEIYQQALGSDTQIGKCVEADLKAIYERDPACDEY
                     SLPLLYFKGFHAIQAHRINHRLYLDGRKTLAYFLQNRMSEVFGVDIHPAARFGYGLML
                     DHATGFVAGETAVLGNNISILHGVTLGGSGKEGGDRHPKIGDGVMIGANASILGNIRI
                     GSNAKIGAGSVVVSDVPPSITVVGVPAKPVARSLKTPSADMDQNIQFTEIDFMI"
     gene            7555..8133
                     /gene="grpE"
                     /locus_tag="ACFOCA_000525"
     CDS             7555..8133
                     /gene="grpE"
                     /locus_tag="ACFOCA_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFC6987288.1"
                     /translation="MSEQTQQQNSEEAVENVEAVETVETVGNADGVQEQAAAEPAYED
                     LQARIAELEAQLKDEQLRALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEM
                     ALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQ
                     EPNTVVGVMKKGYTLSDRVLRPAMVTVAQKEA"
     gene            complement(8257..8472)
                     /gene="nqrM"
                     /locus_tag="ACFOCA_000526"
     CDS             complement(8257..8472)
                     /gene="nqrM"
                     /locus_tag="ACFOCA_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HFC6987289.1"
                     /translation="MKTLLLTFGIFLTVIIGMAVGYIFSKRTIKGSCGGITALGMKKM
                     CDCDTPCDTLQKKLDEEKQAGGIRVDR"
     gene            complement(8498..9553)
                     /locus_tag="ACFOCA_000527"
     CDS             complement(8498..9553)
                     /locus_tag="ACFOCA_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6987290.1"
                     /translation="MPSETRLPNFIRVLIFALGFIFLNACSEQTAQTVTLQGETMGTT
                     YTVKYLSNNRDKLPSPAEIQKRIDDALKEVNRQMSTYQPDSEISRFNQHTAGKPLRIS
                     SDFAHVTAEAVRLNRLTHGALDVTVGPLVNLWGFGPDKSVTREPSPEQIKQAASYTGI
                     DKIILKQGKDYASLSKTHPKAYLDLSSIAKGFGVDKVAGELEKYGIQNYLVEIGGELH
                     GKGKNARGEPWRIGIEQPNIVQGGNTQIIVPLNNRSLATSGDYRIFHVDKSGKRLSHI
                     INPNNKRPISHNLASISVVADSAMTADGLSTGLFVLGETEALKLAEREKLAVFLIVRD
                     TGGYRTAMSSEFEKLLR"
     gene            complement(9705..10922)
                     /gene="nqrF"
                     /locus_tag="ACFOCA_000528"
     CDS             complement(9705..10922)
                     /gene="nqrF"
                     /locus_tag="ACFOCA_000528"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HFC6987291.1"
                     /translation="MEIILGIVMFTVIVLVLALMILFAKSKLVSEGDITIKVNGEKEL
                     TMPAGGKLLGALANEGIFIPSACGGGGSCGQCRVVVKSGGGDILPTELSHISKREARE
                     GCRLSCQVNVKTDMDIEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFR
                     AGGYIQIEAPPHTVAYKDFDIPEEYHEDWDKYNLWQYVSKVDEPILRAYSMASYPEEK
                     GIIMLNVRIATPPPRVPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFI
                     GGGAGMAPMRSHIFDQLKRLNSKRKITFWYGARSKREMFYVEDFDQLAAEFPNFTWHV
                     ALSDPLPEDNWDGYTGFIHNVVYENHLKNHEAPEDCEFYMCGPPIMNQSVIKMLKDLG
                     VEDENILLDDFGG"
     gene            complement(10936..11529)
                     /gene="nqrE"
                     /locus_tag="ACFOCA_000529"
     CDS             complement(10936..11529)
                     /gene="nqrE"
                     /locus_tag="ACFOCA_000529"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HFC6987292.1"
                     /translation="MEHYLSLFIKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGVA
                     VIFVLGLSVPVNQLVYSLLKDGAIVEGVDLTFLKFITFIGVIAALVQILEMFLDKFVP
                     ALYNALGIYLPLITVNCAIFGAVSFMAQREYNFGESVVYGFGAGLGWMLAIVALAGIT
                     EKMKYSDAPKGLKGLGITFIAAGLMAMAFMSFSGIQL"
     gene            complement(11533..12159)
                     /locus_tag="ACFOCA_000530"
     CDS             complement(11533..12159)
                     /locus_tag="ACFOCA_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HFC6987293.1"
                     /translation="MADMKRLKHLMFSPFIDNNPIALQVLGICSALAVTTKLQTAIVM
                     GISVALVTGFSSFFISLVRNYIPNSIRIIVQMAIIASLVTLVDQLLQAFAYELSKQLS
                     VFVGLIITNCIVMGRAEAFAMKEPPLESLIDGIGNGAGYGIMLLVVATVRELIGSGKL
                     LGYTVFQTVQDGGWYQTNGLFLLAPSAFFIIGFLIWGLRTWKPEQAEE"
     gene            complement(12159..12935)
                     /locus_tag="ACFOCA_000531"
     CDS             complement(12159..12935)
                     /locus_tag="ACFOCA_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HFC6987294.1"
                     /translation="MAKKFDKDSFSGTLIVVLAVSLICSVIVAGAVVGLKPIQEKQKL
                     QDKQGYILSVAGLMDKDTDIGKTFAERIEQRVVDLATGEYVKDAPKDFSARVAAKDPA
                     QSIQIKPEDDLAGIKSRAKYTEVYLVKGEDGKIGQIILPMHGNGLWSVMYGFVAIQPD
                     GNTINGITYYEQGETPGLGGEIGNPLWQQKFVGKKLFDGQGKLALHVGKGAGSDKEHG
                     VDALSGASLTSKGVQGSFAYWFGENGYIPYLNKLKSAGAQ"
     gene            complement(12928..14160)
                     /locus_tag="ACFOCA_000532"
     CDS             complement(12928..14160)
                     /locus_tag="ACFOCA_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HFC6987295.1"
                     /translation="MGLKHFLEKIEPHFLPGGKHEKWYALYEAAATIFYTSGAVTRKA
                     AHVRDALDSKRMMILVWLALFPAMFYGMYNVGAQAFGALTPDLLQQSIANDWHYAFAD
                     ALGINMSSEAGVLGKMLFGAIYFLPIYATVFAVGGFWEVLFATVRKHEINEGFFVTSI
                     LFALIVPPTLPLWQAALGISFGVVVAKEVFGGTGKNFMNPALAGRAFLFFAYPANLSG
                     DAVWTAVDGYSGATALAQWAAHGADGLKNAVTGQTITWMDAFIGKLPGSIGEVSTLAL
                     LIGGAFIVFARIASWRIIAGVMIGMIAMSSLFNFIGSDTNAMFAMPWYWHLVVGGFAI
                     GMLFMATDPVSASFTNVGKWWYGALIGVMCVLIRVVNPAYPEGMMLAILFANLFAPIF
                     DYFVAQANIKRRKARSNG"
     gene            complement(14163..15506)
                     /locus_tag="ACFOCA_000533"
     CDS             complement(14163..15506)
                     /locus_tag="ACFOCA_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HFC6987296.1"
                     /translation="MIKIKKGLNLPIAGRPEQVIYDGPAITEVALLGEEYAGMRPSMK
                     VKEGDAVKKGQVLFEDKKNPGVVFTAPASGKIAAIHRGEKRVLQSVVIAVEGNDEIEF
                     DRYAPDALAKLSGKEVRRNLIQSGLWTALRTRPFSKIPAVDAEPFAIFVNAMDTNPLA
                     ADPVVVIKEAAENFRRGLLVLSRLTERKIHVCKAAGADVPSENAANIETHEFGGPHPA
                     GLSGTHIHFIEPVGANKTVWTINYQDVIAIGRLFATGRLNTGRVVALGGSQVNKPRLL
                     RTVLGAKVSQITAGELVDADNRVISGSVLNGAIAQGAHDYLGRYHNQISVIEEGRSKE
                     LLGWVAPQPDKYSITRTTLGHFLKNKLFKFNTAVNGGDRAMVPIGTYERVMPLDILPT
                     LLLRDLIVGDTDSAQALGCLELDEEDLALCSFVCPGKYEYGPLLRKVLETIEKEG"
     gene            complement(15854..17275)
                     /locus_tag="ACFOCA_000534"
     CDS             complement(15854..17275)
                     /locus_tag="ACFOCA_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HFC6987297.1"
                     /translation="MRHLPLFSLMLFPASVYAADLDGANLNLLWSLPFALILLSIALG
                     PLFFSHTWHHHYGKITAFWTLLFLIPFSLVFGASAGIHTVAHALVEEYIPFILLLLAL
                     YTISGGILVWGDLNGTPKLNTALLAVGTALASIMGTTGAAMLMIRPLLKANQNRTRRV
                     HIVIFFIFLVANIGGGLTPLGDPPLFLGFLKGVDFMWTVKHMFAPVLISTAVLLTAFY
                     FIDNRFFKQESIAQDTPAQQEKPEKIAIFGKWNFLLLSGVVGAVLMSGLWKPEHPGFE
                     ILGSRYALQNLVRDVILIALTAVSMAITPKQVRAGNEFNFEPIAEVGKLFLGIFITIF
                     PVLSILKAGEAGALGGVVSLVHDTAGHPINTMYFWMSGILSAFLDNAPTYLVFFNMAG
                     GDAQALMTGTLFHSLLAVSMGSVFMGALTYIGNAPNFMVKAIAEQRGVPMPTFFGYMM
                     WSVAFLTPVFIVHTLIFFVFKLL"
     gene            complement(17290..>17512)
                     /locus_tag="ACFOCA_000535"
     CDS             complement(17290..>17512)
                     /locus_tag="ACFOCA_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
                     /protein_id="HFC6987298.1"
                     /translation="FVLNKIIYQKEHIFPSTAIRLPAAFRFGKLVYPDYLLYNQSENF
                     FQKQTGSTVRLCPGGTVPVSLPRAAQGSA"
BASE COUNT         4062 a         4130 c         4854 g         4466 t
ORIGIN      
        1 gaagccgcag acagtacaga tagtacggaa ccgattcact tggtgcttca gcaccttaga
       61 gaatcgttct ctttgagcta aggcgaggca acgctgtact ggtttaaatt taatccacta
      121 tataaaaaat ttccagagaa ccgatacaac agttggaact tgggtttggg aatattacgg
      181 tagatgaact tggaacctct gttatgctat ggtcttttat ctcaattgaa aaaagcgcga
      241 atcaaacggt tcgcgctttt ttcagacggt attaattatt ttttgtcgtc ttttacttct
      301 tcaaagtcgg catctacgac atcatcgtct ttctttgcag aagcattggc ttgttcgctt
      361 tcgcctgctt gggcttcagc ttgtgcttga gcgtaaacca tttcccccag tttttggctg
      421 gctgcgccca gcgcctcggt tttggcatcg atagcggctt tgtcgtcgcc tttaactgct
      481 tcttcggctt ctttcagcgc ggcttcgatt ttttctttct cggctgcgtc gagtttgtcg
      541 ccgtagtcgg ccaaagattt tttcacagag tgaatcaggg cttcagcttg gttgcgggaa
      601 gcgaccaatt cagtcagttt tttatcttcc tcggcattgg cttcggcatc tttcaccatg
      661 cgttcgattt cttcttcgct caaacctgaa gaaccttgga tggtgatgtt ggctgctttg
      721 ccagtgcctt tgtctttggc ggaaacgtgc aggatgccgt tggcgtcgat gtcgaaggtg
      781 acttcgattt gcggcatacc gcgcggtgcg ggtgcgatgt cgcccaagtt gaactgaccc
      841 aaagatttgt tggcagaagc gcgttcgcgt tcgccttgca gtacgtggat ggttactgcg
      901 ctttggttgt cttcggcggt agagaacact tgcgacgctt tagtcgggat agttgtgttc
      961 ttttgaatca gcttggtcat cacgccgccc atggtttcga tacccaagga cagaggggtt
     1021 acgtccagca gcaatacgtc gctgcggccg ccgctcaata cttcgccttg gatcgctgcg
     1081 cctacggcaa cggcttcgtc agggttcacg tctttgcgcg gttctttgcc gaagaaatct
     1141 ctaacggctt cttgtacttt cggcatacgg gactgaccgc cgaccaaaat tacgtcgtcg
     1201 atgtcgctgg tgctcaagcc ggcatctttc aatgcggtgc ggcaaggctc gatagagcgg
     1261 gcaatcaggt cttcaaccag gctttcgaat ttggcgcggg taattttcat cgccaagtgt
     1321 ttcgggccgg ttgcgtccat ggtgatgtac ggcaggttaa tttcggtttg ctggccgctg
     1381 gacaattcga ttttggcttt ttcggcagct tctttcaggc gttgtagagc catcacgtct
     1441 tgtttcaaat caatgccttg ttcttttttg aactcggcga tgatgtggtc gatgaggcgt
     1501 tggtcgaagt cttcaccgcc caagaaggta tcgccgttgg ttgccaatac ttcgaattgt
     1561 ttgtcgccgt cgaggttggc gatttcgatg atggaaatat cgaaagtacc gccgcccaag
     1621 tcatatacgg ctactttgcg gtctttgttg tcgcctttgt ccataccgaa tgccaaagcg
     1681 gctgcggtcg gctcgttgat gatgcgtttc acgtccaaac cggcgatacg gcctgcgtct
     1741 ttggtggctt gacgttggct gtcgttgaag taggcaggga cggtaatcac ggcttcggtt
     1801 actttttcgc ccaagtaagc ttcggcggct tctttcattt tacgcaggac ttctgcggaa
     1861 atttgaggag gagacagctc tttgccttgt gcttttaccc atgcgtcgcc gttgttggct
     1921 ttgatgattt cgaaaggcat agattcgatg tcgcgttgga cttctttgtc ttcaaatttg
     1981 tggccgatca aacgtttggc ggcgtaaata gtgtttttgg cgttggttac cgcttggcgt
     2041 ttggcaggcg caccgacgag gatttcgccg ccgtccaaat aagcgataac ggacggcgtg
     2101 gtgcgtgcgc cttctgcgtt ttcgatcact ttggtttgac cgttttcgga aatggccaaa
     2161 caagagttgg ttgtacctaa gtcgataccg attacttttg ccatgtggat aatcctattt
     2221 gattttgctt attttgagaa atatgttgga acattttgtc ccgatgggct gtaaataggg
     2281 cgggcggcgg gctgtttcaa gctacagcat ggctataagt atataacttt atgaatatat
     2341 tggttttata tttgatttaa tacatttggc tccaatgcat tcaagcataa tgtttcaaat
     2401 ggcaggcagg tttattcata gacgatgccg gcgagcattt cctgttcgtt caagttgccg
     2461 tactcttttt cccagtcgtg tgaagactcg atgatgtcgc attctttgga aagggagact
     2521 tgttctgcat ccatatcttt ggcgttcagt atgttgaatt gttcgcatag ggatgcggat
     2581 aaagtgatgt caggctgttt ggcttcagaa cggttttctt ggaaggcaaa gcagaatgcg
     2641 gtaaatgccg cagcatagat aagatatttg ccggttttct tcattttcta tcctttttct
     2701 gtcaactcag gattaaacct atggaaaatc ttaaaaatta tgtattgagt aagaaaaatc
     2761 ataatttaaa tttagtttat catagttgtt ccgtttttgg gatagctaag gtaaaatata
     2821 tttcatgttt actttagatg attgaatgaa ggggagcgga aggatattta tggaaacctt
     2881 taaagacaga ctggtttttt tatggaaaag cgaagcgaag caggcaaaaa tcgcatccga
     2941 tattgaaatg acgattgcgg gcttcagcag gatatggaat gaaggcggtc tgccgaagtc
     3001 tgaaacatta aaaaaaatca agcagttgaa ggggtgtagt atcgattggc tgctgaccgg
     3061 ggagggtaat ccgtttccgg atgaagcccc aaaaaaatcc cttgcttacg ataccttggg
     3121 aaatgaagtc gatacggacg agtttgtctt tgtgccgaga tatgatattc gggcggctgc
     3181 gggatacggg cagtttgtcg atcatgagga accggtattt acaatggcgt tcagacggca
     3241 ttggattgag aattatgtta cccgcaatac gaaaaacctg tctgtaattt ccgtcaaggg
     3301 ggattcgatg gagggggttt tgaatgacgg cgattcgatt ttggtcaacc atagcgagaa
     3361 tacgccgagg gacggactgt atgtgttgcg gattaatgaa aatctgctgg ttaaacgttt
     3421 acagattgta ccgggcggga taatcaacgt tatttccgcc aacgaggctt accctgcttt
     3481 tgaaattaat ttgaatcatc ctgccgatga tgtggaaatc atcgggcggg tcgagtggtt
     3541 cggcaggacg atttgagttt ggggcttgaa atcgggagcg gtcaaactta tctgtaaggc
     3601 agttcctttt cagggaacaa gcccccgctt gcctttgaag ggggtttgag agagaatgca
     3661 gaaaatatta tattaaggaa taacaccatg tcggatgaaa gccctattat ttttactgac
     3721 agctgctgtg ccaaagttgc cgatttgatt gccgaagaaa acaatcccga tttgaaattg
     3781 cgggtttttg tcaatggcgg cggctgttcg ggtttccagt acggatttac ttttgatgaa
     3841 atcaaaaacg acgacgattt tgaaattgag aaaaacggtt tggtcttttt ggtcgatccg
     3901 atgagctatc aatatctggt cggcgcggaa atcgactata cggaaagttt gcagggttcg
     3961 caattcgtca tccgcaatcc gaatgcggaa acaacctgcg gttgcggatc gtcgttttcc
     4021 gtatgaccgc ttggtttgtg tgatgccgtc tgaacgttca gacggcattt ttacttttgg
     4081 aaaatatatt atcgggatga attcacatat aatccgattg tttgaagatg aatcgggttt
     4141 cccgaaagga acgggcggaa cggtatcagg cgtatttgtt cccttatgat tgagatgagt
     4201 aaagattacc gaaacgattt gtacgatgta tatgtttcct acccgcccaa agtggattgc
     4261 gggcttatcc gggagtgtct cagggagaat ctcggcgaag aaaaggcgga aggattgatt
     4321 gagtccctcg attccaaacc gcaagtgctg gttgaggaaa aatgtacctg ggaaaagcgg
     4381 gcagagttgc acgattattt cagctatttg ggtttggata ttattactcg gagatatatg
     4441 gagttagaaa cggtcgtgcc gccggaggaa ggggagggcg aaggagaagg cggggatggg
     4501 gaaatacccg aatatcttga acttcatagc gaatgggaag atgatatttc cgcaccttcg
     4561 caagccgaac cgccgccccg caatatcaaa ccgctggttt tcgggctgct gatagccttt
     4621 ttgggctatc tgctcggtaa gattttttga ttgtccgata aatgctgtat tcgggatttt
     4681 atatatgaaa tggttgaaac gcctgacggt tattgtcggg actttttacc gctatcggct
     4741 ggcaggtctg tgcgcttcgc tgatgggtag cggttggata tgcgctctgc tgaaaatgat
     4801 gccgcagtcg tccaaattga aaaacgaacc gcctgccgtc cgtctgcgcc ttgccttgga
     4861 aagcctgggg ccgattttca tcaagttcgg gcaggttttg tccacacgcc ctgatttgat
     4921 tccgcacgat tacgccgtcg aactggcaaa gctgcaagac aaagtgccgc cttttgacgc
     4981 gcggctttcg cgtgaacaaa tcgaaaaatc gttgggtcag tccatcgaaa agctgtatgc
     5041 ggaatttgaa accgagcccg tcgccagcgc gtccatcgcc caagtacaca aagcccgcct
     5101 gcattcgggc gaacgagtgg ctgtcaaagt tttgcgcccc aaccttttgc cccttatcga
     5161 acaggatttg tcgctgatgc gtttcggcgc ggtttgggtg gagcgtctgt ttgccgacgg
     5221 caagcgtctg aagccgctcg aagtggtggc ggagttcgac aaatacctgc acgacgagtt
     5281 ggatttgatg cgcgaagccg ccaatgccgg acagctcggg cgcaatttcc aaaacagcaa
     5341 tatgctgatt gtgcccaagg tgttttacga ctactgcacc agcgacgtgc tgacaatcga
     5401 atggatggac ggcacgccgg ttgccgacat cgccaaactc aaagcagacg gcatcgattt
     5461 gcacaaactc gccgattacg gcgtggaaat ctttttcacg caggtcttcc gcgacggctt
     5521 tttccacgcg gatatgcacc ccggcaatat tttggttgcc gccgacaacc gctacatcgc
     5581 cctcgatttc ggcatcgtcg gcacgctgac cgattacgac aaacgttatc tcgccatcaa
     5641 tttcctcgcc tttttcaacc gcgattaccg gcgcgtcgcc accgcccaca tcgaatcggg
     5701 ctgggtgcct gccgacacgc gtgcggaaga attggaagcc gccgtccgcg ccgtgtgcga
     5761 accggtgttc aacaaaccga tttcgcagat ttccttcggc ttggtgctga tgcgcctgtt
     5821 tgaagtcagc cgccgcttca atgtcgaaat ccaaccgcag cttgtgctgc tgcaaaaaac
     5881 gctgctcaac atcgaaggct tgggccgcca gctcgatccc gatttggact tgtggaaaac
     5941 cgccaaaccg tttttggtga aatggatgaa cgggcaggtc ggccctaaag ccctttggcg
     6001 caacctcaaa aacgaagccc ccgactgggc gcaaatcatc ccttcattgc cgcgcaaaat
     6061 cagtgcgttg attgatgaaa accgccagca ggaaatgcgt gatgcctata tccatttggt
     6121 caaagtgcag cagcggcaaa gcctgtggct ggctgtgatt gcggttgttt tgctgctgat
     6181 tttgcttttg aaataggctt tgtccgaatc atcgcccgac tccgcccgtt tataaggaaa
     6241 tcggttatag tggattaaca aaaaccagta cggcgttgcc tcgccttagc tcaaagagaa
     6301 cgattctcta aggtgctgaa gcaccaagtg aatcgattcc gtactatccg tactgtctgc
     6361 ggcttcgtcg ccttgtcctg atttttgtta atccactata tttccggttg cgtgggaatc
     6421 gggtgtattg aataaaaggc attttgtccg actggcaagt gccgacatcg gcggcatatc
     6481 aaggcgcagg cttgaagcgg gcaatgtcgt ctgaagcccg tttggcgttt cagacggcat
     6541 tggtgcggat attcaaatca taaagtcgat ttcggtaaac tggatatttt gatccatatc
     6601 cgccgacggt gttttgagcg atcgcgccac gggtttggcg ggtacgccga caaccgtgat
     6661 ggacggcggc acgtctgaaa ccacgacgct gcccgccccg attttggcat tgctgccgat
     6721 gcggatattg cccaatatcg aggcgtttgc gccgatcatc acgccgtcgc cgattttagg
     6781 gtggcggtcg ccgccttctt tgcccgaacc gccgagcgtt acgccgtgca aaatcgaaat
     6841 attgttgccc aacacggcgg tttcgccggc aacaaagccg gtggcgtggt cgagcatcag
     6901 cccgtatccg aaacgggcgg cgggatggat gtccacgccg aatacttcgg acatacggtt
     6961 ttgcaggaaa tacgccagcg ttttgcgccc gtcgagatac agccgatggt tgatgcggtg
     7021 tgcctgaatc gcgtggaagc ctttgaaata taaaagcggc agcgaatatt cgtcgcaggc
     7081 gggatcgcgt tcgtagatgg cttttaagtc tgcttcgacg catttgccga tttgggtgtc
     7141 gctgcccaac gcctgctggt agatttcaaa cagcgcgcgc acgtccataa tcgggctgcc
     7201 gagtttgctg gaaaggtggt aggcaaggac ggagccgagg gactcgtggc gcaacacggt
     7261 ttggtgcaaa aaacttgcca gcatcggttc ggcggagacc gcggccgcgg tttcttcgcg
     7321 gatggtgtgc cagaggtcga aaccggttgt gtttaaatgg tcttttttca tgagtgatga
     7381 cgtttgaaaa tcgatatggt cggcagtatc ttaccgtcta tattattttt tcggtagggg
     7441 atttgaaaat gaatttgaaa ttctctgctt ttgcttgaag tttcttgaaa atgtccttat
     7501 cttgcgcggg taataactgg attttgattt ccaatttgtt ttaagggata cgatatgagc
     7561 gaacagacac agcagcaaaa cagtgaagaa gcggttgaaa atgtggaggc ggtggaaacc
     7621 gtcgagacag taggaaatgc ggacggtgtg caggaacagg ctgccgcaga gccggcttat
     7681 gaggatttgc aggcgcggat tgccgagctg gaagcgcagt tgaaagacga gcagctgcgc
     7741 gctttggcaa acgagcaaaa cctgcgccgc cgccaccagc aggaaattgc ggatacgcac
     7801 aagttcgccg gacagaagtt tgccgtggaa atgctgccgg tcaaggatta tctggaaatg
     7861 gcgcttttgg atcagagcgg caatttcgat gcgctgaaaa tgggcgtgca gatgactttg
     7921 aacgagttgc agaaagcatt tgatgctacg caaatcaagg aaatcaatcc taaagcgggc
     7981 gataagctcg atccgaatat ccatcaggcg atgcaggcgg tggcaagcga acaggaaccc
     8041 aataccgtgg tgggcgtgat gaagaagggt tatacgctgt ccgaccgcgt gttgcgcccg
     8101 gctatggtta cggtggcaca gaaggaagcc tgaaggcgtc tggggaataa tctgatttat
     8161 ttcctgaagc gcgttttgcg tataaaccga tcgaagtaaa gcggcaatgc cgtctgaacc
     8221 cgcctgtcgg gcttcagacg gcattttgtt tcggtgttaa cggtcaaccc gtatgccgcc
     8281 tgcctgtttt tcttcatcca gtttcttttg cagggtgtcg caaggcgtgt cgcagtcgca
     8341 catttttttc atacccaagg cggtaatgcc gccgcaactg cctttgatgg tgcgtttgga
     8401 gaagatatag ccgaccgcca taccgatgat gacggtcagg aagatgccga aggtgaggag
     8461 cagggttttc atggtgtttc ctaatcggtt tgtatgttta gcggagcagt ttttcaaatt
     8521 cggaagacat ggcggtgcgg tagccgcctg tatccctgac aatcaggaaa acagcgagtt
     8581 tttcgcgctc tgccagcttt aaggcttcgg tttcgcccaa tacgaataat cctgtggaca
     8641 agccgtccgc cgtcatcgca ctgtctgcga ccacgctgat ggaggcgagg ttgtggctga
     8701 tgggtcgttt gttgttcgga ttaatgatat gggagaggcg tttgccgctt ttatcgacgt
     8761 ggaaaatacg gtaatcgccg gaagtggcaa gcgaacggtt gttcagcggg acgataatct
     8821 gcgtattgcc gccttggacg atgttgggct gttcgatgcc gatgcgccaa ggttcgccgc
     8881 gcgcgttttt gcctttaccg tgcaactcgc cgccgatttc gaccagataa ttttgaatgc
     8941 cgtatttttc cagttcgccc gcaactttat caacgccgaa gcctttggca atcgaagata
     9001 aatccaaata ggccttgggg tgggttttgc tcaaggaagc gtaatctttg ccttgtttca
     9061 aaatgatttt gtctatgccc gtataagatg ctgcttgttt gatttgttcc ggcgacggtt
     9121 cacgggtaac ggatttgtcg gggccgaatc cccaaaggtt gaccaagggg ccgacggtta
     9181 cgtccagcgc gccgtgtgtc aggcggttca ggcggacggc ttcggcagta acgtgtgcga
     9241 agtcgcttga aatgcggagg ggcttgccgg ctgtgtgttg gttgaaccgg ctgatttcgg
     9301 agtcgggctg ataggtggac atctgccggt tgacttcttt aagcgcgtca tcgatgcgct
     9361 tttgtatttc ggcaggtgag gggagtttgt cccgattatt tgaaaggtat ttgacggtat
     9421 aggtcgtgcc catcgtttcg ccttgcaggg taacggtttg cgcggtttgt tccgaacagg
     9481 cgttcaggaa gatgaaaccc agggcaaata tcaagacgcg gataaagttc ggcaggcgtg
     9541 tttcagacgg catagtgttt gacggttttg gcaaatggtt tgaattatat cgcaaaacgg
     9601 ccgatatgtt tctatgccga tgccgtctga agggggttcg ggcggcatcg gatagaaaaa
     9661 ggaagaaacc gaggtttctt ccttttgtgt ttgaagccga atatttaacc gccgaaatcg
     9721 tccaagagga tgttttcgtc ttccacgcct aagtctttaa gcattttgat gacggactgg
     9781 ttcatgatcg gaggaccaca catataaaat tcgcagtctt ccggcgcttc gtggtttttc
     9841 agatggtttt cgtaaaccac gttgtgaatg aagcctgtgt agccgtccca gttgtcttca
     9901 ggcaatgggt cggacagggc gacgtgccat gtgaagttcg ggaattctgc tgcgagttgg
     9961 tcgaagtctt cgacatagaa catttcgcgt ttggaacgtg cgccgtacca gaaggtaatc
    10021 ttacgtttgg agttcaaacg tttcaactgg tcgaaaatgt gggaacgcat cggagccata
    10081 cccgcaccgc cgccgataaa taccatttcg gcatcggtgt ctttggcgaa aaattcgccg
    10141 aacgggccgg aaatcgtaac tttgtcgccg ggtttgagcg accagatgta ggacgacatt
    10201 tgtcccggag gcgcatcagg tacgcgcggg ggcggcgtgg cgatacgcac gttcagcata
    10261 atgatgcctt tttcttcagg atacgaagcc atagagtagg cacgcaaaat cggctcgtcc
    10321 actttggaaa cgtattgcca caaattgtat ttgtcccagt cttcgtggta ttcctcggga
    10381 atgtcgaagt ctttgtaggc aacggtgtgc ggcggggctt caatttgaat gtagccgccg
    10441 gcgcggaagg ggacttcttc gccttcggga atggcaagct tgagttcttt aatgaacgtg
    10501 gctttgttat cgttggagat gacggtgcat tcccattttt tcacgccgaa cacttcttcg
    10561 gggacttcga tgtccatgtc ggttttgacg ttgacttggc acgacagacg gcagccttcg
    10621 cgtgcttcgc gtttgctgat gtgggacagc tcggtcggca ggatgtcgcc gccgccgctt
    10681 tttacgacga cgcggcattg tccgcacgaa ccgcccccgc cgcaggcgga ggggataaag
    10741 atgccttcgt tggcaagcgc gcccaagagt ttgccgccgg cgggcatcgt cagctctttt
    10801 tcgccgttga ctttgatggt gatgtcgcct tcgctgacca gtttggattt ggcaaacaga
    10861 atcatcagtg ccaaaaccaa aacgatgacg gtaaacatca cgatacctaa aataatctcc
    10921 ataccgatcc ctttcttata actggatgcc agagaacgac ataaacgcca tcgccatcag
    10981 gccggcggcg ataaaggtaa tgcccaagcc tttgaggcct ttgggagcgt ccgaatattt
    11041 cattttttcg gtaatgcccg ccaaagcgac aatcgccaac atccagccca agcccgcgcc
    11101 gaagccgtat acaacggact cgccgaagtt gtattcgcgt tgcgccataa acgatacggc
    11161 gccgaaaatc gcgcagttca cggtaatcag cggcaggtag atgcccaatg cgttatagag
    11221 ggcggggacg aatttatcca agaacatttc caaaatctgc accaaagcgg caatcacgcc
    11281 gatgaaggtg atgaatttca aaaaggtcaa atccacgcct tcgacaatcg cgccgtcttt
    11341 gagcagcgag taaacgagtt ggttgacagg gacggacagc ccgagtacga aaattaccgc
    11401 cacacccaaa ccgaatgcgg tggatacttt tttggatacc gccaaaaacg tgcacatacc
    11461 caaaaagaag gatagtgcca tattttcaat gaagacggat ttgatgaaga ggctcaaata
    11521 gtgttccata gcttattcct ccgcctgttc gggtttccag gtacgcagtc cccaaatcaa
    11581 aaagccgatg atgaagaacg cgctgggggc gagcaggaac aagccgttgg tctgatacca
    11641 gccgccgtcc tgcacggttt ggaaaacggt gtagcccaag agtttgcccg agccaatcag
    11701 ttcgcggacg gtggcgacga caagcagcat tatcccgtag cccgcgccgt tgccgatgcc
    11761 gtcgatcagg ctttccagcg gcggctcttt catcgcaaat gcttcggcgc ggcccatcac
    11821 gatacagttg gtaataatca gaccgacgaa tacggaaagc tgtttggaca attcgtaggc
    11881 aaatgcctgc aagagttggt cgaccagcgt aaccagcgac gcgataatcg ccatttgcac
    11941 gataatacgg atgctgttgg ggatgtagtt gcgtaccagc gaaatgaaga agctggaaaa
    12001 accggttacc aaagctacgg aaatacccat cacgatggcc gtctgaagtt tggtggtaac
    12061 cgccaaagcc gaacaaatac ccaaaacctg caaggcaatc gggttgttgt cgataaaggg
    12121 tgaaaacatc aaatgtttca agcgtttcat atcagccatt attgcgctcc tgctgatttc
    12181 aatttgttca ggtaggggat atagccgttt tcgccgaacc agtaggcgaa cgaaccttgc
    12241 acgcctttgg atgtcagcga tgcgccggag agggcatcta cgccgtgttc tttgtccgaa
    12301 cccgcgcctt tgccgacgtg cagggcgagt ttgccttgtc cgtcaaacag ttttttgccg
    12361 acgaattttt gctgccacaa cggattgccg atttcgccgc ccaagcccgg ggtttcgcct
    12421 tgttcgtagt aggtaatgcc gttgatggtg ttgccgtcag gttggatggc gacgaagccg
    12481 tacatgaccg accacaaacc gttgccgtgc ataggcagga tgatttgccc gattttgccg
    12541 tcttcacctt ttaccaaata aacctcagtg tatttggcac ggcttttgat gcctgccaaa
    12601 tcgtcttcgg gtttgatttg gatgctttgc gcgggatctt tggcagcaac acgcgcgctg
    12661 aagtctttcg gcgcgtcttt cacatattcg ccggtcgcca aatcgacaac acgttgctcg
    12721 atacgctcgg caaaggtttt accgatgtcg gtgtccttat ccatcaaacc ggctacgctc
    12781 aagatatagc cttgtttgtc ttggagtttt tgtttctctt ggatgggttt caagccgacg
    12841 accgcaccgg caacgatgac cgagcaaatc aggctgaccg ccaacacgac aatcagagtg
    12901 ccgctgaagc tgtctttatc gaatttctta gccattgctg cgcgcctttc tgcgtttgat
    12961 gttcgcttgt gcgacgaaat agtcgaaaat cggggcaaac aggttggcaa acagaatcgc
    13021 caacatcatg ccttcggggt aagccggatt gaccacgcgg attaacacgc acatcacacc
    13081 gatcagcgca ccgtaccacc atttgccgac attggtaaag gaagcggaaa cagggtcggt
    13141 cgccataaac agcataccga tggcgaagcc gccgacgacc aaatgccagt accaaggcat
    13201 agcaaacatg gcgttggtgt ccgaaccgat gaagttgaac agcgaagaca tcgcaatcat
    13261 accgatcatc acgccggcaa taatgcgcca agaagcgatg cgggcaaaca cgataaacgc
    13321 gccgccgatt aagagtgcca aagtggagac ttcgccgatg gagccgggca gtttgccgat
    13381 aaacgcgtcc atccaagtga tggtttgacc ggttacggcg tttttcaggc cgtctgcacc
    13441 gtgtgccgcc cattgcgcca gcgcggttgc gccggaatag ccgtcaaccg ccgtccaaac
    13501 cgcatcgccg ctcaagttgg cggggtaggc gaagaacagg aaggcgcggc ctgccagcgc
    13561 agggttcata aagtttttac ccgtaccgcc gaatacttct ttcgcaacca caacgccgaa
    13621 agaaataccc aaagccgcct gccacagcgg cagcgtgggc ggaacgatta aggcaaacag
    13681 aatcgaggta acaaagaaac cttcgttgat ttcgtgtttg cgcacggtgg cgaacaagac
    13741 ttcccagaaa ccgccgacgg caaatacggt cgcgtaaatc ggcaggaagt aaatcgcgcc
    13801 gaacagcatt ttgcccaaca cgcccgcttc agacgacata ttgatgccca aagcgtcggc
    13861 aaaggcgtaa tgccagtcgt tggcgatgct ttgttgcagc aaatcgggcg ttaaggcacc
    13921 gaatgcctgt gcgccgacgt tgtacatgcc gtaaaacatg gcggggaaca aagccagcca
    13981 caccaaaatc atcatgcgct tggagtcgag cgcgtcgcgg acgtgtgccg ctttgcgcgt
    14041 taccgcaccg gatgtgtaga aaatcgtcgc cgccgcttcg tagagggcat accatttttc
    14101 atgtttgccg cccggcagga agtgcggttc gattttttcc agaaaatgtt tcaagcccat
    14161 aatcagcctt ccttctcaat ggtttccagc actttgcgca acagcgggcc gtattcgtat
    14221 ttgcccgggc agacgaagct gcacaaagcg aggtcttctt cgtccaattc caagcaaccc
    14281 aatgcctgcg cgctgtcggt atcgccgacg attaaatcgc gcaaaagcag ggtaggcagg
    14341 atgtctagcg gcattacgcg ctcgtaagta ccaatcggca ccatggcgcg gtcgccgccg
    14401 ttgacggctg tgttgaactt gaagagtttg tttttcagga aatggccgag ggttgtacgc
    14461 gtgatggagt atttgtccgg ctgcggcgca acccagccga gcagctcttt gctgcggcct
    14521 tcttcgataa cggaaatctg attgtggtag cgtcccaaat aatcgtgcgc gccttgtgca
    14581 atcgcgccgt tcaataccga accggaaatc acgcggttgt ctgcgtcaac caattcgccc
    14641 gcagtaattt gcgatacttt cgcacccaaa acggtacgca agaggcgtgg tttgttgact
    14701 tgagaaccac ccaaggcaac cacgcgcccg gtgttcagac ggcctgttgc aaacaaacgt
    14761 ccgatggcaa ttacatcttg ataattgatg gtccaaacgg ttttgtttgc accgaccggc
    14821 tcaatgaaat gaatgtgcgt gccactcaaa ccggccggat gcgggccgcc gaattcatgt
    14881 gtttcgatgt tggcggcgtt ttcagacggc acgtctgcgc ctgctgcttt acacacatgg
    14941 attttacgct cggtcaaacg gctcaatacc agcaaacctc gtctgaaatt ctcggcggct
    15001 tctttgatca caaccacagg gtctgccgcc agcggattgg tgtccatcgc attgacgaag
    15061 atggcgaacg gctcggcatc gacggcaggg attttgctga acggacgggt acgcagcgca
    15121 gtccacaaac cggattgaat cagattgcgg cgcacttctt tgccgctcaa ttttgccaag
    15181 gcatcgggcg cgtagcggtc gaattcgatt tcgtcgttgc cttcaacggc aatcacgacc
    15241 gactgaagta cgcgcttttc gccgcgatgg atggcggcga ttttgcctga agccggcgcg
    15301 gtaaacacca cgcccggatt ctttttgtct tcaaacagca cttggccttt tttgacggca
    15361 tcgccttcct tgactttcat cgaggggcgc ataccggcat attcttcgcc aagcaacgcg
    15421 acttcggtaa tggccgggcc gtcataaatg acttgctccg gtctgcccgc gatgggcagg
    15481 tttagacctt ttttgatttt aatcatatat ttgcattact tgtgatggtt aaggtaaaaa
    15541 cggcgtgttt tgataccgtg tcgcgtggca tcaaaagcat tgaataaatt aatgtagcaa
    15601 agtgttagat tctatcagga attgtacctg tttgtcagat ttgctgcttt tttccttgcg
    15661 gaagccgttt ttacagtgga ttaaatttaa accagtacgg cgttgcctcg ccttgccgta
    15721 ctatttgtac tgtctgcggc ttcgtcgcct tgtcctgatt tttgttaatc cactataatt
    15781 gtcggaaggg gggatattga tttgattatg ccggaattta aaatgccgtc tgaatgttca
    15841 gacggcatag cgtttacagc agtttgaaaa cgaaaaagat aagggtatgt acgatgaaga
    15901 cgggtgtcag gaaggcgacc gaccacatca tatagccgaa gaaagtcggc atcggtacgc
    15961 cgcgctgttc ggcaatggcc ttgaccatga agttcggtgc gttgccgatg taggtcagtg
    16021 cgcccatgaa taccgaaccc atagaaaccg ccagcagcga atgaaacagg gtacccgtca
    16081 tcaaggcttg ggcatcgccg cccgccatat tgaaaaaaac gagataagtg ggcgcgttat
    16141 ccaagaatgc cgacaatatg ccgctcatcc aaaaatacat cgtattaatc ggatgacctg
    16201 ccgtatcgtg aaccagcgat accaccccgc ccagcgcgcc tgcctcgcct gctttcagaa
    16261 tgctcaggac gggaaagatg gtgatgaaga tgccgaggaa gagtttgccc acttcggcga
    16321 tgggttcaaa gttgaattcg ttgcctgcgc ggacttgttt gggcgtgatt gccatagata
    16381 cggcggtcaa tgcaatcagg atgacatcgc ggacgaggtt ttgcagggcg taacggctgc
    16441 cgaggatttc aaatcccggg tgttcgggtt tccaaaggcc ggacattaga accgcgccga
    16501 ccacgcccga aagcaggagg aagttccatt tgccgaagat ggcgattttt tcgggttttt
    16561 cctgttgtgc cggcgtatct tgtgcaatgc tttcctgttt gaagaaacgg ttgtcgatga
    16621 aatagaaggc ggtcaacagg acagcggtgc tgatcaggac gggggcgaac atatgtttga
    16681 ccgtccacat gaaatctacg cctttgagga agccgaggaa gagtgggggg tcgcccaaag
    16741 gggtcagacc gccgccgatg tttgcaacca ggaaaatgaa gaagatgacg atgtgcacgc
    16801 ggcgggtacg gttttggttg gctttcagca gcggacgaat catcagcatt gctgcgccgg
    16861 tcgttcccat gatagaggca agtgccgtac cgacggcaag cagggcggtg ttgagcttgg
    16921 gtgtgccgtt caagtcgccc caaaccaaaa tgccgcctga aatggtgtac agggcaagca
    16981 gcagcaggat gaaggggatg tattcttcaa cgagtgcgtg tgcgacggta tggataccgg
    17041 cggacgcgcc aaaaaccaaa ctgaacggga tgaggaagag caatgtccaa aaggcggtga
    17101 ttttgccgta atggtgatgc caggtatgcg aaaaaaacaa gggacccaat gcgatagaca
    17161 gcaaaatcag ggcaaagggc aggctccaca gcaggtttag gtttgcgccg tccaaatctg
    17221 cggcgtaaac cgatgcgggg aaaagcatta gtgaaaacag gggtaggtgg cgcatcgtgt
    17281 ttcctcgatt caagcactgc cttgcgcggc gcgtgggagt gatacaggca ccgtgccgcc
    17341 cggacatagg cggactgtgc tgcctgtttg tttttgaaaa aagttttccg attgattgta
    17401 aagtaaataa tcaggataaa ccagtttccc aaaccggaag gcggcgggaa ggcggattgc
    17461 tgtgcttggg aatatatgtt ctttttgata aataatttta tttaaaacaa at
//
LOCUS       DAXIFS010000019        17139 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.019, whole genome shotgun sequence.
ACCESSION   DAXIFS010000019 DAXIFS010000000
VERSION     DAXIFS010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17139
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.019"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(123..281)
                     /locus_tag="ACFOCA_000536"
     CDS             complement(123..281)
                     /locus_tag="ACFOCA_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987299.1"
                     /translation="MKPPLPICTLSALAACTLSGQGGTQVYGEIKARDLCVTAPILLS
                     AFCLACSR"
     gene            complement(278..1120)
                     /locus_tag="ACFOCA_000537"
     CDS             complement(278..1120)
                     /locus_tag="ACFOCA_000537"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6987300.1"
                     /translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDHRLS
                     YSKWVRPMLVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
                     QNNPADEHVMLAQAIEEKHAAEKAQEQTASGASYVLREIGADDTATAFAALSVLRSAL
                     TDINRFTEQINKVQRPQGYRLLGIFEEGKHNAVAVCGFREACTLASGRHIHIDDIVTL
                     PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
                     CDPK"
     gene            1359..2279
                     /gene="pyrB"
                     /locus_tag="ACFOCA_000538"
     CDS             1359..2279
                     /gene="pyrB"
                     /locus_tag="ACFOCA_000538"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HFC6987301.1"
                     /translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
                     IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
                     IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
                     DLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
                     WADILYMTRVQRERFDEQEFAKIQGKFNLDASMLARAKPNLRVLHPLPRVDEIHPDVD
                     ATPHAYYFEQATNGVYARMAILSLVLNEEV"
     gene            2289..2747
                     /gene="pyrI"
                     /locus_tag="ACFOCA_000539"
     CDS             2289..2747
                     /gene="pyrI"
                     /locus_tag="ACFOCA_000539"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009347 - aspartate carbamoyltransferase
                     complex [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HFC6987302.1"
                     /translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
                     FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
                     AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
     gene            2812..3477
                     /locus_tag="ACFOCA_000540"
     CDS             2812..3477
                     /locus_tag="ACFOCA_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987303.1"
                     /translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
                     SALSAVALVWLAWAFVSARSKAKAEKFYREKMIQNESIHPVLHASLQHLEHKPQMLAL
                     LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
                     IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALDLGALNQALQEISKTSEKSKR
                     IFY"
     gene            complement(3540..4757)
                     /locus_tag="ACFOCA_000541"
     CDS             complement(3540..4757)
                     /locus_tag="ACFOCA_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6987304.1"
                     /translation="MQRRIITLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLW
                     GISGKYLYSPWQWGRLWDANRDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVV
                     KMSPDKEVSGYGIPAIDVNFYRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRV
                     YTKGLKEPGRYLTYRINKNITDPDTGKFLGQEVAFSGIVRSLDYTDSVLEQRSKQAGE
                     RPKDNEYHTRTHPLITPLRTPSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEP
                     SRPVQAKIVSVFEGTRIAGQFQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFK
                     SRDTVELISTPAEEVGLAMVYRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQ
                     GRSRVKFGFDRSE"
     gene            4941..5444
                     /gene="def"
                     /locus_tag="ACFOCA_000542"
     CDS             4941..5444
                     /gene="def"
                     /locus_tag="ACFOCA_000542"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFC6987305.1"
                     /translation="MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRG
                     IGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT
                     RAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLK
                     KRQKHTI"
     gene            5531..6457
                     /gene="fmt"
                     /locus_tag="ACFOCA_000543"
     CDS             5531..6457
                     /gene="fmt"
                     /locus_tag="ACFOCA_000543"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFC6987306.1"
                     /translation="MKVIFAGTPDFAAAALKAVAAAGFEIPLVLTQPDRPKGRGMQLT
                     APPVKQAALELGLRVAQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
                     GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIQPTD
                     TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSES
                     AAVIERKIRAFNPVPAAWVEYQGKPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
                     ALKITELQPAGGRRMNIAAFAAGRHIEAGTKL"
     gene            6536..7795
                     /gene="rsmB"
                     /locus_tag="ACFOCA_000544"
     CDS             6536..7795
                     /gene="rsmB"
                     /locus_tag="ACFOCA_000544"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HFC6987307.1"
                     /translation="MSMALAQKLAADSIAAVAEGRNLQDVLAQIRTAHPDLTAQENGA
                     LQDIAYGCQRYLGSLKHMLAQMLKKPIDNPQLESLLLAALYQLHYTRNAPHAVVNEAV
                     ESIAKIGRGQYRSFANAILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKH
                     WHNITAALQSHPPMTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRL
                     PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
                     AGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDAILADVPCTASGVARRNPD
                     VKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHA
                     DAEPIESRVLLPNKHQDGFYYALIQKH"
     gene            7761..8360
                     /locus_tag="ACFOCA_000545"
     CDS             7761..8360
                     /locus_tag="ACFOCA_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HFC6987308.1"
                     /translation="MAFITRLFKSIKQWLVLLPMLSVLPDAAAEGIDVSRAEARITDG
                     GQLSISSRFQTELPDQLQQALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNID
                     YKLSFHPLTNRYRVTVGAFSTDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAE
                     IRLTLSTSKLPKPFQINALTSQNWHLDSGWKPLNIIGNK"
     gene            8360..10477
                     /locus_tag="ACFOCA_000546"
     CDS             8360..10477
                     /locus_tag="ACFOCA_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6987309.1"
                     /translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
                     LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPGVFLFGVSAQFINGTI
                     NSWFGNDTHEALERSLNLSKSALNLAADNALGNAIPVQIDLISTASLSGNMGRVLEHY
                     ANGFTQLSLYNAASGKIEKSINPHKLDQPFPDKARWEKIQQAGSVRDLESIGGVLYAQ
                     GWLSAGTHNGRDYALFFRQPVPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATLL
                     IASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTKL
                     FNHMTEQLSIAKEADERNRQREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAEQ
                     ILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKILL
                     GKATVLPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAERL
                     AWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALIG
                     DVLALYEAGPCRFAAELAGEPLMVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVKS
                     EAGQDGRIVLTVCDNGKGFGKEMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRIS
                     LSNQDAGGACVRIILPKTVKTYA"
     gene            10470..11747
                     /locus_tag="ACFOCA_000547"
     CDS             10470..11747
                     /locus_tag="ACFOCA_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HFC6987310.1"
                     /translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
                     QVRPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGALDF
                     LEKPISLQKLLSAVENALKHGAAKIETGPVFDKLGNSAAIQEMNCEVEAAAKRTSPVF
                     LTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR
                     NIQTGIAFIIGKAERCRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
                     DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
                     EIGAAAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
                     VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
     gene            11838..13031
                     /gene="dprA"
                     /locus_tag="ACFOCA_000548"
     CDS             11838..13031
                     /gene="dprA"
                     /locus_tag="ACFOCA_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFC6987311.1"
                     /translation="MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQV
                     ALAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
                     PPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPVVSGMASGIDT
                     AAHQGALQAEGGTIAVWGTGIDRIYPPSNKNLAYEIAERGLIVSEFPLDTRPFAGNFP
                     RRNRLIAALSQVTLVVEAALESGSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIK
                     DGAKLTECLDDILNECPRLLQNEGASSYSINKGMPEKRITAVQTASDQLSLPEGKMPS
                     EKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRY
                     QRIRT"
     gene            13057..13518
                     /locus_tag="ACFOCA_000549"
     CDS             13057..13518
                     /locus_tag="ACFOCA_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HFC6987312.1"
                     /translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
                     MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
                     ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
     gene            13590..15896
                     /gene="topA"
                     /locus_tag="ACFOCA_000550"
     CDS             13590..15896
                     /gene="topA"
                     /locus_tag="ACFOCA_000550"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFC6987313.1"
                     /translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
                     DPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
                     GLKNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
                     KLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
                     TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
                     SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
                     AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
                     VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
                     PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPLMDKFWKPFIKQVE
                     EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
                     AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCANYPKCKHVEPLEKPKD
                     TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAESCPKCAWPVLTIKT
                     TKRWGVEKVCPQKECGWKEQIEPPAPKE"
     gene            complement(15969..16664)
                     /locus_tag="ACFOCA_000551"
     CDS             complement(15969..16664)
                     /locus_tag="ACFOCA_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987314.1"
                     /translation="MMKDLNLSNSLFKGYNDKHGLMICGYEWGWSKADEAAYVAGEYK
                     LPENKIDHTFANKSLYFGEQAKKWRYDNTIKNWFEMWGHPLDENGLGGAFEKSLVQTN
                     WAATQGNTIDNPDKFTQPEHIDNFLYHIEKLRPKVILFMGSRLADFLNNQNVLPRFEQ
                     LVGKQTKPLETVQKEFDGTRFNVKFQSFEDCEVVCFPHPSASRGLSYDYIALFAPEMN
                     RILSDFKTTRGFK"
     gene            complement(16844..>17139)
                     /locus_tag="ACFOCA_000552"
     CDS             complement(16844..>17139)
                     /locus_tag="ACFOCA_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987315.1"
                     /translation="RAVFFYSYRDVTIIFLTPVILIALSYLIKNKEILSACILCITLI
                     AFSWAWIIIYRPNTKRFFLSLLIVWGKLLFKYYCLGNSRHITWLSCNNREQQA"
BASE COUNT         4110 a         4533 c         4875 g         3621 t
ORIGIN      
        1 tcacggtgta ctttagtgca aagcgtacaa cgcgagcctg aaccaccagc cgcaacagga
       61 aaagaaagcc gatagagtgc aatgcttgcc aacgtgcaag cgagcttgca agaacgcttg
      121 gctcaacgag agcaggcaag acagaaagca gaaagcagga taggagcggt aacgcaaagg
      181 tctcgggctt tgatttcgcc gtaaacctga gtgccgcctt gtccggaaag ggtgcaggcg
      241 gcgagtgccg acagggtgca gatggggagg gggggtttca tttggggtcg caacggaagt
      301 ggtatgcgca gatttcaaaa ccgtttttga aatacaggcg gtgcgcgtcg gcacggtcgt
      361 ggttgacgtg gacgttgagg tggattttgg ttacccctgt ttccgcgccg attttgcgga
      421 cttcttccaa aaggcgcgag gcgtagcctt tgcggcggct ttgcggcagg gtaacgatgt
      481 catcgatgtg gatgtggcgg ccgctggcga gggtgcaggc ttcgcggaag ccgcagacgg
      541 cgacggcatt gtgtttgcct tcttcaaaaa tacccagcag gcggtagcct tgggggcgtt
      601 ggactttgtt gatctgttcg gtaaagcggt tgatgtcggt cagggcggaa cgcaaaacgc
      661 tcaaggctgc aaaggcggtg gcggtgtcgt ccgcgccgat ttcgcgcaaa acgtaggatg
      721 cgcccgaggc ggtctgttcc tgtgctttct cggcggcgtg tttttcttcg attgcctgtg
      781 ccagcatgac gtgttcgtcg gcagggttgt tttgtccgcc ctgttcgcgt tcttcgagca
      841 gggctttgca gtcgatgacg cgcaggtcgt tgtcggcggc aaagtccatc aggaagcgga
      901 acatttgggg gttgtcggtt tccagttttt tatcgacggc gacgcagcgg atgttgtcca
      961 ccagcatggg gcgcacccat ttcgaatagg aaagcctgtg gtctttggtg aacgaggaca
     1021 gaatgccgca caggcgttcc gcccagtcgc tgggacggaa aatcttgccg gaactcgttg
     1081 tgccgtggat gacgacttcg taggggttgc agactaacat ggcggcttcc tgaaaagaaa
     1141 tgtctggcgc gattatacct tatgcttatg cgggcgtgtt tggatatgcc gtctgaaaag
     1201 tacgggattc gtgcggtaaa actttgcggc ggcaaatgtg cgataatacg cgccgtattg
     1261 ccgcttttgc gaagctgttc cgcaaacata cgggcggcgt ggacgacgta taaccggata
     1321 cccgcctgac gcgggttttt tacggaaggg gggcaaaaat gcctaatccg ctttacagac
     1381 agcatatcat ctccatttcg gatttgtcgc gcgaacagtt ggaatgcctg cttcagacgg
     1441 cattgaagct gaaggcgcat ccgcgcggcg atttgttgga aggcaaactt atcggttcgt
     1501 gcttctttga accgtccacg cgcacgaggc tgtcgtttga aacggcggtg cagcggctgg
     1561 gcggcaaggt catcggcttt tcggacggcg cgaataccag tgccaaaaaa ggcgagacgc
     1621 ttgccgatac cgcccgcatc atttccggct acaccgacgc aatcatccaa cgccacccca
     1681 aagacggcgc ggcgcgcgtg gcagcggagt tttcgcgcgt ccccgtcatc aacgccggcg
     1741 acggcaccaa ccagcacccc agccagacct tgttggatct ggttaccatt tatgaaacgc
     1801 agggacgttt ggacaagctc aaaatcgcca tggcgggcga cttgaaatac ggacgtaccg
     1861 tgcattcgct ttgtcaggcg ttgaaacgct ggggctgcga atttgccttt gtttcgccgc
     1921 ccagcctcgc gatgcccgac tacattaccg aagagttgga cgaagccggc tgccgatacc
     1981 gtatcctcgg tagtttggaa gaagcggcgg aatgggcgga catcctgtat atgacccgtg
     2041 ttcaacgcga acgtttcgac gaacaggaat ttgccaaaat ccaaggcaaa ttcaatctcg
     2101 acgcatccat gcttgcccgc gccaaaccga acctgcgcgt gctgcaccct ttgccgcgcg
     2161 tggacgaaat ccatcccgat gtcgatgcta cgccgcatgc ctattatttc gagcaggcga
     2221 ccaacggcgt ttatgcgcgt atggcgatat tgtcgctggt gttgaacgaa gaagtgtgag
     2281 gaaccgatat ggaaaccccg aaactcagtg tcgaagccat tgaaaaaggt acggttatcg
     2341 accatattcc cgccggcagg gggctgacca tcctgcgcca gttcaaactt ttgcactacg
     2401 gcaacgcggt aaccgtgggc ttcaacctgc ccagcaaaac ccaaggcagc aaagacatca
     2461 tcaaaatcaa aggcgtgtgc ttggacgaca aagccgccga ccgcctcgcc ctgttcgccc
     2521 ccgaagcggt ggtcaatacc atcgacaatt tcaaggtcgt gcagaagcgg catttgaacc
     2581 tgcccgatga aattgccgaa gtgttccgtt gcccgaacac gaattgcgcc ggccacggcg
     2641 agccggtcaa aagccggttt tatgttaaaa aacacaacgg gcagacgcgg ctgaaatgcc
     2701 attactgcga aaaaacctac agccgggatt cggtggcgga agcctgacgg attcccttaa
     2761 accgagcggg cggcatttcg tctgccgctt gttttgccaa tctgaaatgg aatgatgatg
     2821 cacgcttctg tccaaagccg tttcgcaccg atactttatg ttttgatttt ctttgccggt
     2881 tttttgaccg cgcaaatttg gttcaatcag aaagcctata ctgaagagct gcctccgctt
     2941 ctgtccgcat tgtccgccgt cgcgctggtg tggctggcgt gggcgttcgt gtcggcgcgt
     3001 tcaaaggcta aggcggaaaa gttctaccgc gaaaaaatga tacagaacga aagcatacac
     3061 cccgtcctgc acgcttcttt gcaacacttg gaacacaagc cgcaaatgct cgccctgctg
     3121 gtcaaaaacc acggcaaagg gatggcggaa caggtcaggt tcaaggcgga agtgctgccc
     3181 gacgacgaag acgcgcgcac gattgccgcc gagttggcaa aaatggatat gtttgcattg
     3241 gggacggacg cggtcgcctc gggcgaaacc tatggacgcg tgttcgccga tattttcgag
     3301 ttgtcggcgg ctttggaagg gcgcgcgttc aaaggaatgt tgaaactgac ggcggaatat
     3361 aaaaacatct tcggcgatgc ctgccgttcg gaaacggcgt tggatttggg cgcgctcaat
     3421 caggcgttgc aggagatttc aaaaacatcg gaaaagtcca aacggatatt ttattgaaga
     3481 tggaaaaatg ccgtctgaaa cggaaggtgt ttcagacggc atttttgtcg gatgattaat
     3541 tattcggagc ggtcgaagcc aaacttcacg cggctgcggc cctgatccgg tatattgtcc
     3601 aaatcgcgtc ccggattggc ggcggtgtcg cctacggaaa tatcggagat gttttccaaa
     3661 atgatggcgg acgacaggtg ttcggaggtg cggtaaacca ttgccaagcc cacttcttcg
     3721 gcaggagtgg aaatcagctc gacggtatcc ctgcttttga aattgttgga gaggtcgacc
     3781 tgcatcgttt tcttgcgttt gtagaggctc aaaaccgtgc ctttgtccaa accgtccgcc
     3841 tcgcctttgt cgatggtgat ggtttgaaac tggccggcaa tccttgtacc ttcaaacacg
     3901 gaaacgattt tagcctgaac cgggcgggac ggttcgtgcg gcatcatgtt gaagcggtcg
     3961 gtgtcttccg gcattttcat caggtagtcg ccctgctgta tttcggaaat ggcggtttcg
     4021 accaccagcg gctgtatcga aggggtgcgc agcggggtaa tcaaaggatg ggtgcgggta
     4081 tggtattcgt tgtctttcgg ccgttctcca gcctgtttcg agcgttgttc gaggacagag
     4141 tcggtatagt cgagggagcg cacgatgccg ctgaatgcga cttcctgccc gaggaattta
     4201 cccgtatccg gatcggtgat gtttttattg attcggtagg tcaggtagcg gcccggctct
     4261 ttcaggcctt tggtgtaaac cctggtgcct ttggtgtaca gcagcctgcc ttccgggccc
     4321 gagagcaggc gcggcgcggc agcggtttct ttgcgggaaa cgatttgcgg gtgccgcata
     4381 aagatgcggt agaagttgac atcgatggcg ggaataccgt atccggacac ttccttatcc
     4441 ggactcattt tgacgacggg gatgccgtct gtctgttcca agccgaggcg cggttcgccg
     4501 tcaacgtggc gcaacaccaa tacctggtcc ggataaatca ggtcgggatt gtggatttga
     4561 tcccggttcg cgtcccacag gcggccccat tgccacgggc tgtacaggta tttgcccgaa
     4621 atgccccaca gggtgtcgcc ctgtttgacc gtgtagcgtt ccggcgcgtt cgggcgcacc
     4681 tccaaatttg ccgccaaagt ttgtgttgag aatgccatac ctgccgcgca gagcagggtt
     4741 ataatacgac gttgcataac cgttcccctt atctgataaa tttcggtttg tcttgcttga
     4801 ttgggttgga aaaagcggcg gcagcccctc gggatgtgcc gcgtgataaa aaatgttccg
     4861 cattttaaca tcgaattatc cgcaccatca cggtaattat gaaaaacagg cggcgtatcc
     4921 gccgaaggaa agagaaaatt atggctttat tgaatatctt gcaatatccc gacgagcgtc
     4981 tgcacacggt ggcaaagcct gtcgaacaag tcgacgagcg catccggaag ctgattgccg
     5041 atatgtttga aacgatgtac gaatcgcgcg gcatcgggct ggcggcgacg caggtcgatg
     5101 tgcacgagcg cgtggtcgtg atggatttga ccgaagaccg cagcgaaccg cgcgtgttca
     5161 tcaaccccgt catcgttgaa aaagacggcg aaaccactta cgaagagggc tgcctgtccg
     5221 tgccgggcat ttacgacacc gtaacccgcg ccgaacgcgt caaggtcgag gctttgaacg
     5281 aaaaaggcga aaagttcacg ctggaggcgg acggcttgct ggcgatttgc gtgcagcacg
     5341 agttggacca cctgatgggc atcgtgtttg tcgaacgcct gtcgcagctc aagcagggac
     5401 gcatcaaaac caagctgaaa aaacgtcaga aacatacgat ttgacccttt tgccgtgccg
     5461 tctgaacgct gcaaagtttt cagacggcac ggtcttgtcc gacaacctta cgcatacgca
     5521 ggaatatgct atgaaagtca tctttgccgg cacgcccgat tttgccgccg ccgccttaaa
     5581 agccgttgcc gccgccggtt ttgaaatccc gctggtgctg acccagcccg accgtccgaa
     5641 agggcgcggt atgcaactga ccgccccgcc cgtcaaacaa gccgcgctgg aactcggttt
     5701 gcgcgtggca cagcccgaaa aactgcgtaa caacgccgaa gccctgcaaa tgctcaaaga
     5761 ggtcgaggca gacgtaatgg tggttgccgc ctacggtttg attctgccgc aggaagtgtt
     5821 ggatacgccg aaacacggct gcctcaacat ccacgcttcg ctgttacccc gttggcgtgg
     5881 cgcggcgccg attcaacgcg cgattgaagc cggcgatgcc gagacaggcg tgtgtattat
     5941 gcagatggac atcggtttgg acaccggcga tgtggtcagc gaacaccgct acgccatcca
     6001 accgaccgat accgccaacg aagtccacga cgcgctgatg gaaatcggtg cggcggcggt
     6061 tgttgccgat ttgcaacagc ttcaaagcaa aggccgtctg aacgcggtca aacagcccga
     6121 agaaggtgtt acttacgccc aaaaactaag caaagaagag gcgcgtatcg attggagcga
     6181 aagcgcggcg gttatcgaac gcaaaatccg cgccttcaac cccgtgcctg ccgcgtgggt
     6241 tgagtatcag ggcaagccga tgaaaatccg gcgggcggaa gtggtggcgc aacaaggcgc
     6301 ggcaggcgaa gtgttgtcct gttcggcgga cggtttggtc gttgcctgcg gcgaaaacgc
     6361 gctgaagatt accgaattgc agcctgccgg cggcaggcgt atgaatatcg cggcgtttgc
     6421 agcaggacgg catatcgaag cagggacgaa gctgtaaatc ccttcagacg gcattccgat
     6481 ccgcaaacgg gaatgccgcc tgaaaccatc agttgaagaa agcgaatcac ataatatgag
     6541 tatggcactt gcccaaaaac ttgccgccga cagcattgcg gcggttgccg aaggacgcaa
     6601 ccttcaggac gtgttggcgc aaatccgcac cgcgcatccc gaccttacgg cacaggaaaa
     6661 cggcgcgttg caggacatcg cctacggctg ccagcgttat ttgggcagtt tgaaacatat
     6721 gctcgcgcag atgctgaaaa agccgattga caacccgcag ctcgaaagcc tgcttttggc
     6781 ggcgttgtac caactgcatt acacgcgcaa cgcgccgcac gccgtggtca acgaagcggt
     6841 ggaaagcata gccaaaatcg gacgcgggca gtaccgttcg tttgccaacg cgattttgcg
     6901 ccgctttttg cgcgaacgcg acaagcttgc ggcttcctgt aaaaaagacg atgtggcgaa
     6961 acacaacctg ccgctgtggt gggtggctta cctgaaaaac cattatccga aacactggca
     7021 caacatcacc gccgcgctac aatcccatcc gccgatgacg ttgcgcgtca accgccgaca
     7081 cggcaatgcc gaaagctatt tggaaaaact ggctgcggaa ggtattccgg ccagggcgtt
     7141 ggacgaatat gcggttacgt tggaagaagc cgtgccggta aaccgtctgc ccggtttttc
     7201 agacggcatt gtttcggtac aggacttcgg tgcgcagcag gcggcgtatc ttcttaaccc
     7261 gaaagacggc gaacggattt tggacgcgtg cgccgcgccg ggcggcaaga cggggcatat
     7321 cttggaactg gcggattgcc gcgttaccgc cttggacatc gatgcaggcc gtctgaagcg
     7381 tgtggaggac aatatcgccc gtttgggctt tcagacggca tcggcggcgt gtgccgatgc
     7441 gcgggatttg gcggcgtggt atgatggaaa gcctttcgac gcaatccttg ccgacgtgcc
     7501 atgcaccgct tccggcgtgg cgcggcgcaa tcccgacgtg aaatggctgc gccgtccgac
     7561 cgacgcgctc aaaaccgccc gccagcagga agccctgctg gacgcacttt ggcagacgct
     7621 gaaacagggc ggcagaatgc tgcttgccac ctgttccgtg ttcgtcgaag aaaacgacgg
     7681 gcaattgcaa aaattcctca accgccatgc cgatgccgaa ccgatcgaat cgcgggtgct
     7741 tttaccgaac aaacaccaag atggctttta ttacgcgctt attcaaaagc attaaacaat
     7801 ggcttgtgct gctgccgatg ctttccgttt tgccggacgc ggcggcggag gggatagatg
     7861 tgagccgcgc cgaagcgagg ataaccgacg gcgggcagct ttccatcagc agccgcttcc
     7921 aaaccgagct gcccgaccag ctccaacagg cgttgcgccg gggcgtgccg ctcaacttta
     7981 ccttaagctg gcagctttcc gccccgataa tcgcttctta tcggtttaaa ttggggcaac
     8041 tgattggcga tgacgacaat attgactaca aactgagttt ccatccgctg accaaccgct
     8101 accgcgttac cgtcggcgcg ttttcgacag actacgacac cttggatgcg gcattgcgcg
     8161 cgaccggcgc ggttgccaac tggaaagtcc tgaacaaagg cgcgctgtcc ggtgcggaag
     8221 caggggaaac caaggcggaa atccgcctga cgctgtccac ttcaaaactg cccaagccat
     8281 ttcaaatcaa tgcattgact tctcaaaact ggcatttgga ttcgggttgg aaacctctaa
     8341 acatcatcgg gaacaaataa tgcgccgttt tctaccgatc gcagccatat gcgccgtcgt
     8401 cctgttgtac ggactgacgg cggcaaccgg cagcaccagt tcgctggcgg attatttctg
     8461 gtggatagtt gcgttcagcg caatgctgct gctggtgttg tccgccgttt tggcacgtta
     8521 tgtcatattg ctgttgaaag acaggcgcga cggcgtattc ggttcgcaga ttgccaaacg
     8581 cctttctggg atgtttacgc tggttgccgt actgcccggc gtgtttctgt tcggcgtttc
     8641 cgcacagttc atcaacggta cgattaattc gtggttcggc aacgataccc acgaggcgct
     8701 tgaacgcagc ctcaatttga gcaagtccgc attgaatctg gcggcagaca acgcccttgg
     8761 caacgccatc cccgtgcaga tagacctcat cagcaccgcc tccctatccg gcaatatggg
     8821 cagggtgctg gaacattatg ccaacgggtt tacacagttg tccctttaca atgccgcaag
     8881 cggcaaaatc gaaaaaagca tcaacccgca caagctcgat cagccgtttc cggataaggc
     8941 gcgttgggaa aaaatccaac aggcgggttc ggtcagggat ttggaaagca taggcggcgt
     9001 attgtacgcg cagggctggc tgtcggcggg tacgcacaac gggcgcgatt acgccttgtt
     9061 tttccgtcag ccggttccca aaggcgtggc agaggatgcc gtcttaatcg aaaaggcaag
     9121 ggcgaaatat gctgagttga gttacagcaa aaaaggtttg cagacctttt tcctggcaac
     9181 cctgctgatt gcctcgctgc tgtcgatttt tcttgcactg gtcatggcac tgtatttcgc
     9241 ccgccgtttc gtcgaacccg tcctatcgct tgccgagggg gcaaaggcgg tggcgcaagg
     9301 cgatttcagc cagacgcgcc ccgtgttgcg caacgacgag ttcggacgct tgaccaagtt
     9361 gttcaaccac atgaccgagc agctttccat cgccaaagaa gcagacgagc gcaaccgcca
     9421 gcgcgaggaa gccgccagac attatcttga atgcgtgttg gaggggctga ccacgggcgt
     9481 ggtggtgttt gacgaacaag gctgtctgaa aaccttcaac aaagcggcgg aacagatttt
     9541 ggggatgccg cttacccccc tgtggggcag cagccggcac ggttggcacg gcgtttcggc
     9601 gcagcagtcc ctgcttgccg aagtgtttgc cgccatcggc gcggcggcag gtacggacaa
     9661 accggtccat gtgaaatatg ccgcgccgga cgatgccaaa atcctgctgg gcaaggcaac
     9721 cgtcctgccc gaagacaacg gcaacggcgt ggtaatggtg attgacgaca tcaccgtttt
     9781 gatacacgcg caaaaagaag ccgcgtgggg cgaagtggcc aaacggctgg cacacgaaat
     9841 ccgcaatccg ctcacgccca tccagctttc cgccgaacgg ctggcgtgga aattgggcgg
     9901 gaagctggat gagcaggatg cgcaaatcct gacgcgttcg accgacacca tcgtcaaaca
     9961 ggtggcggca ttgaaggaaa tggtcgaagc attccgcaat tatgcgcgtt ccccttcgct
    10021 caaattggaa aatcaggatt tgaacgcctt aatcggcgat gtgttggcat tgtatgaagc
    10081 cggtccgtgc cggtttgcgg cggagcttgc cggcgaaccg ctgatggtgg cggcggatac
    10141 gaccgccatg cggcaggtgc tgcacaatat tttcaaaaat gccgccgaag cggcggaaga
    10201 agccgatgta cccgaagtca gggtaaaatc ggaagcgggg caggacggtc ggattgtcct
    10261 gacggtttgc gacaacggca aagggttcgg caaggaaatg ctgcacaacg ccttcgagcc
    10321 gtatgtaacg gacaaaccgg cgggaacggg attgggtctg cctgtggtga aaaaaatcat
    10381 tgaagaacac ggcggccgca tcagcctgag caatcaggat gcgggtggcg cgtgtgtcag
    10441 aatcatcttg ccaaaaacgg taaaaactta tgcgtagcag cgatatttta attgtagacg
    10501 acgaaatcgg catccgcgac ctgctgtcgg aaatcctgca ggacgaaggt tattcggtcg
    10561 cattggcgga aaacgccgaa gaggcgcgca agctgcgcca tcaggtacgc ccggcgatgg
    10621 tgttgctgga tatttggatg cccgattgcg acggcatcac ccttttgaag gagtgggcga
    10681 aaaacgggca gctcaatatg ccggtggtga tgatgagcgg gcatgccagc atcgataccg
    10741 ccgtagaagc gaccaaaatc ggcgcgctcg actttttgga aaaaccgatt tccctgcaaa
    10801 agctgctgtc tgccgtcgaa aacgcgttga aacacggtgc ggcgaaaatc gaaacggggc
    10861 ctgtattcga caagctgggc aacagtgcgg cgattcagga gatgaactgc gaagtcgaag
    10921 cggcggcaaa gcgcacgtcc cctgtatttt tgacgggcga agcgggttcg ccgtttgaaa
    10981 ccgtggcgcg ctatttccat aaaaacggta cgccgtgggt cagtccggca agggtcgaat
    11041 atctgatcga tatgccgatg gaactgttgc agaaggcgga gggcggcgtt ttgtatgtcg
    11101 gcgacatcgc ccaatacagc cgcaatatcc aaaccggcat tgcctttatc atcggcaagg
    11161 cagaacgctg ccgcgtcagg gtggtcgcat cgggcagcag ggcggcaggt tcagacggca
    11221 ttgcctgcga ggaaaagctg gcggaactgc tgtcggaatc ggtcgtccgt attccgccgc
    11281 tgcgtatgca gcatgaagat attcccttcc tgatacaggg gattgcctgc aatgtggcgg
    11341 aaagccaaaa gattgcgcct gcctcattca gtgaagaggc acttgccgca ttgacccgtt
    11401 acgactggcc gggaaatttc gaccaactgc aaagcgtcgt tgcaacgctg ttgttggagg
    11461 cggacggaca ggaaatcggc gcggcggcgg tttcttccct tttggggcag aatgtgcctg
    11521 ccgagggagc ggaagatatg gtgggcgggt ttaatttcaa cctgcccctg cgcgaattga
    11581 gggaggaggt ggagcggcgt tatttcgagt accacatcgc ccaagaaggt cagaatatga
    11641 gcaaagtggc gcagaaggtc ggtttggaac gcacgcacct ttaccgcaaa ctcaaacagc
    11701 tcggcatcgg cgtttcgcgc cgggcggggg aaaaaaccga agaataggcc cggacggccg
    11761 gttttccggc tgcgggcttt tgttttcaga cggcatttgg tgcaaatgcc gtctgaaatc
    11821 gtaaggggac ggattttatg acagaggacg aacgtttcgc gtggctgcaa ttggcgttta
    11881 cgccctatat cggcgcggaa agcttcctgc tgctgctgcg ccgtttcggc agcgcgtcaa
    11941 acgccctgtc cgcaccggcg gaacaggtcg ccctggcggt gcggcacaag caggcggccg
    12001 aggcttggcg caatgcggaa aaacgcgcct cggcgcggca ggcggcagaa gcggcgttgg
    12061 aatgggaaat gcgggacgga tgccgtctga tgctgcttca ggatgaagat ttccccgaaa
    12121 tgctgacgca ggggctgacc gcgccgccgg ttttgttttt gcgcggcaac gtgcggctgc
    12181 tgcacaagcc ttccgccgcc atcgtcggca gccgccatgc cacgccgcag gcgatgcgga
    12241 ttgccaaaga tttcggcagg gcgttgggtg ggaaaggcat tcccgtcgtg tcgggtatgg
    12301 cttcgggcat cgacaccgcc gcccatcagg gcgcgttgca ggcagaaggc ggcaccatcg
    12361 ccgtgtgggg gacgggcata gaccgcattt atccgccgtc caataaaaac cttgcttatg
    12421 aaattgccga aaggggattg attgtcagcg agttcccttt ggacacgcgt ccgtttgcag
    12481 gcaactttcc gcgccgcaac cgcctgattg ccgcactgtc gcaagtaacg ctggtggtcg
    12541 aggccgcctt ggaatccggt tcgctgatta ccgccggttt ggcggcagaa atggggcgcg
    12601 aggtaatggc ggtacccggt tcgatagaca acccgcacag caaaggctgc cacaaactga
    12661 ttaaagacgg cgcgaaactg acggaatgcc tggacgacat cctgaacgaa tgcccgcggc
    12721 tcttgcaaaa tgagggtgct tcgtcatatt ctataaataa gggaatgcct gaaaagcgca
    12781 tcactgccgt tcagacggca tccgaccagc tgtctctgcc tgaaggcaaa atgccgtctg
    12841 aaaagacgga gaaccgaccc gtcggcggca gtatcttgga caggatgggt ttcgacccag
    12901 ttcatcccga cgtgcttgcc ggacagttgg ctatgcctgc cgcagatttg tatgccgcac
    12961 tgttggaatt ggaattggac ggcagcgttg ccgcaatgcc cggcggcaga taccagcgta
    13021 tccgaacttg aacgcacttt atattaagga acacgaatga ccgaagtcat cgcctacctc
    13081 atcgaacatt tccaagattt cgatacctgt ccgccgcccg aagacttggg tatgctgctt
    13141 gaagaagcgg gtttcgatac gatggaaatc ggcaacaccc tgatgatgat ggaagtattg
    13201 ctcaacagct ccgaattttc cgccgaaccc gccgacagcg gcgcattgcg cgtgtacagc
    13261 aaagaagaaa ccgacaacct gccgcaggaa gtgatggggc tgatgcagta tctgattgaa
    13321 gaaaaagccg tcagctgcga acagcgggaa atcatcatcc acgcgctcat gcacattccg
    13381 ggcgacgaaa ttaccgtaga taccgccaaa gtgctgaccc tgctgctttt atgggcaaac
    13441 aagagcgagc tgcccgtgtt ggtcggcgac gagctgatga gcgcgctttt actcgacaac
    13501 aaacccacga tgaactgaag cggcttcaga cggcccgccc gaggccgtct gaaacgccgg
    13561 catcaaaacc accatccaga gaacgacaaa tggcgaaaaa cctattaatc gtcgaatccc
    13621 cgtccaaagc caaaaccctg aaaaaatatt tgggcggcga ttttgaaatc cttgcatcct
    13681 acggacacgt ccgcgacctc gtccccaaaa gcggcgcggt cgatcccgac aacggctttg
    13741 cgatgaaata ccaactcatc agccgcaacg gcaagcacgt cgatgccatc gtcgccggtg
    13801 ccaaagaagc tgaaaacatc tacctcgcca ccgacccgga tagggaaggc gaagccattt
    13861 cctggcatct tttggaaatc ctcaaatcca aacgcggctt gaaaaacatc aagccgcagc
    13921 gtgtcgtgtt ccacgaaatc accaaaaacg ccgtgctcga tgccgttgcc catccgcgcg
    13981 aaatcgaaat ggacttggtc gatgcgcaac aagcccgccg tgctttggac tatttggtcg
    14041 gctttaacct ttcgccattg ttatggaaaa aaatccgccg aggtttgagc gcggggcgtg
    14101 tgcaaagccc tgctttgcgc ctgatttgtg agcgcgaaaa cgagatccgc gcgtttgaag
    14161 cgcaggaata ttggacggta catcttgaca gtcacaaagg acgcagcaag ttcaccgcca
    14221 aactcgccca atacaacggc gcgaaactcg aacaattcga cctgccgaac gaagccgcgc
    14281 aagccgacgt gttgaaagaa ctcgaaggca aagaggccgt cgttaccgcc attgaaaaga
    14341 aaaagcgcag ccgcaatcct gccgcgccgt tcaccacttc taccatgcag caggatgccg
    14401 tgcgcaaact cggcttcacc accgaccgca ccatgcgtac cgcccaacag ctttatgaag
    14461 gtatagacgt agggcagggc gcgatcggtc tgattaccta tatgcgtact gacagcgtga
    14521 atttggcgga tgaagcgtta accgaaatcc gccattacat cgaaaacaaa atcggcaaag
    14581 aatatctgcc gagtgccgcc aaacaataca aaaccaaatc caaaaacgcc caagaagcgc
    14641 acgaagccat ccgtccgact tccgtgtacc gcacgcccga aagcgtcaaa cccttcctga
    14701 gcgcagacca gttcaaactc tatcaaatga tttggcagcg taccgtcgcc tgtcagatga
    14761 cgcctgccaa attcgaccaa accaccgtcg atattaccgt cggcaaaggc gtattccgcg
    14821 taaccggaca agtgcaaacc ttcgcaggct tcttgagcgt ttatgaagaa agcagcgacg
    14881 atgaagaagg cgaagacagc aaaaaactgc ccgaaatgag cgaaggcgat aaattgcccg
    14941 tggacaaact ctacggcgaa caacacttta ccactccgcc gccacgctac aacgaagcca
    15001 cgctggttaa agccctcgaa gaatacggca tcggccgccc ctcgacctac gccagcatca
    15061 tctccacgct caaagaccgc gaatacgtta cccttgagca aaaacgcttc atgcccaccg
    15121 acacaggcga catcgtcaac aaattcctga ccgaacactt cgcccaatac gtcgattacc
    15181 actttaccgc caaactcgaa gaccagcttg acgaaatcgc cggcggcaaa cgccaatgga
    15241 ttcccttgat ggacaaattc tggaaaccgt tcatcaaaca agtggaagaa aaagaaggca
    15301 tcgaacgcgc caaatttacc acgcaggaac ttgatgaaac ctgcccgaaa tgcggcgaac
    15361 acaaactgca aatcaagttc ggcaaaatgg gccgtttcgt tgcgtgtgcc ggctatcccg
    15421 agtgcagcta cacgcgcaat gtcaatgaaa ccgccgaaga agccgcagag cgcatcgcca
    15481 aagccgaagc cgaacaggca gaactcgacg gacgcgaatg tcctaaatgt ggtggacggc
    15541 tggtgtacaa atacagccgt accggcagta aattcatcgg ttgcgccaac taccccaaat
    15601 gcaaacacgt cgagccgctg gaaaaaccga aagataccgg cgtccagtgt ccgcaatgta
    15661 aaaaaggcaa cctcgtcgag cgtaaatccc gctacggcaa actgttttac agttgcagca
    15721 cctatcccga ctgtaactac gccacatgga acccacccgt tgcagaaagc tgtccaaaat
    15781 gcgcatggcc ggttttgacc atcaaaacca ccaaacgctg gggtgtagaa aaagtctgcc
    15841 cacaaaaaga atgcggctgg aaagaacaga ttgaaccgcc cgcgccgaag gagtaagatt
    15901 aggttggttt gaaagagaaa aggtcgtctg aaaaattttc agacgacctt tgcttttctg
    15961 tgattggttt atttgaatcc gcgtgttgtt ttaaagtccg ataaaatccg gttcatttca
    16021 ggcgcaaaca aggcgatgta atcgtaagat agaccgcgac tggcactggg atggggaaag
    16081 cagacgactt cgcaatcttc aaacgattgg aatttgacat tgaaacgtgt accgtcaaat
    16141 tctttttgca ccgtctccag cggtttggtc tgcttaccga ccaactgctc gaagcgtggc
    16201 agtacatttt ggttgttcag aaaatccgcc aacctgctgc ccatgaagag gatgactttc
    16261 ggacgcagtt tttcgatgtg gtagagaaaa ttatcgatgt gctcgggttg tgtgaacttg
    16321 tctggattgt cgatagtgtt gccctgtgta gcagcccagt tggtttgaac cagggatttt
    16381 tcaaatgcac cgcccaatcc attttcgtct aaggggtgtc cccacatttc aaaccaattt
    16441 tttatcgtat tatcgtaacg ccactttttt gcctgctctc cgaaatagag ggatttgttt
    16501 gcaaatgtat ggtcgatttt gttttcaggg agtttgtatt cacctgctac ataagcagcc
    16561 tcatcggctt tactccaacc ccattcatag ccacaaatca ttaagccatg tttgtcgttg
    16621 tagcctttga acaggctgtt gctcaaattc aaatccttca tcatgaactc ttccttttaa
    16681 aatttaagag cgattgactt caatgttttt agatggggtg gaaaaatcct tgtgtaggca
    16741 acataaattc aataaatttc ttgataattc gaaacctact aatagcgcac ctataaaagc
    16801 tttttcatta cgttcagcat gacggtcacg tcgttcatat tttttacgct tgctgttccc
    16861 tgttattaca gctaagccaa gtgatatggc gagaattgcc caaacaatag tacttaaata
    16921 acaattttcc ccatactatc aataaggaaa gaaaaaacct tttagtatta ggtcgataga
    16981 ttataatcca tgcccatgaa aatgcaataa gagttataca taagatacaa gctgacagga
    17041 tttctttatt tttaattaaa taacttagag cgatgaggat gacaggtgtc aagaaaataa
    17101 tagttacatc ccgatagcta taaaagaaaa ctgccctat
//
LOCUS       DAXIFS010000020        17013 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.020, whole genome shotgun sequence.
ACCESSION   DAXIFS010000020 DAXIFS010000000
VERSION     DAXIFS010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17013
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.020"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(49..1218)
                     /gene="metK"
                     /locus_tag="ACFOCA_000553"
     CDS             complement(49..1218)
                     /gene="metK"
                     /locus_tag="ACFOCA_000553"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFC6987316.1"
                     /translation="MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAET
                     LVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPD
                     IAQGVNEGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGLL
                     PWLRPDAKAQLTVVYDSESGKVKRIDTVVLSTQHDPEIGYEELKNAVIEQIIKPVLPS
                     ELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVD
                     RSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLV
                     REHFDLRPKGIVQMLDLLRPIYSKSAAYGHFGREEPEFTWERTDKAAALRAAAGL"
     regulatory      complement(1401..1511)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01725"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="SAM-I-IV-variant riboswitch; SAM riboswitches
                     modulate the expression of downstream genes in response to
                     levels of S-adenosylmethionine; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF01725"
     gene            1564..2460
                     /locus_tag="ACFOCA_000554"
     CDS             1564..2460
                     /locus_tag="ACFOCA_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6987317.1"
                     /translation="MFRLQFGLFPPLRTAMHILLTALLKCLSLLPLSCLHTLGNRLGH
                     LAFYLLKEDRARIVANMRQAGMNPDPKTVKAVFAETAKGGLELAPAFFRKPEDIETMF
                     KAVHGWEHVQQALDKHEGLLFITPHIGSYDLGGRYISQQLPFPLTAMYKPPKIKAIDK
                     IMQAGRVRGKGKTAPTSIQGVKQIIKALRSGEATIVLPDHVPSPQEGGEGVWVDFFGK
                     PAYTMTLAAKLAHVKGVKTLFFCCERLPGGQGFDLHIRPVQGELNGDKAHDAAVFNRN
                     AEYWIRRFPTQYLFMYNRYKMP"
     gene            complement(2504..3568)
                     /gene="tsaD"
                     /locus_tag="ACFOCA_000555"
     CDS             complement(2504..3568)
                     /gene="tsaD"
                     /locus_tag="ACFOCA_000555"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFC6987318.1"
                     /translation="MLVLGIESSCDETGVALYDTERGLRAHCLHTQMAMHAEYGGVVP
                     ELASRDHIRRLVPLTEGCLAQAGASYGDIDAVAFTQGPGLGGALLAGSSYANALAFAL
                     DKPVIPVHHLEGHLLSPLLAEEKPDFPFVALLVSGGHTQIMAVRGIGDYALLGESVDD
                     AAGEAFDKTAKLLGLPYPGGAKLSELAESGRPEAFVFPRPMIHSDDLQMSFSGLKTAV
                     LTAVEKVRAENGADDIPEQTRNDICRAFQDAVVDVLAAKVKKALLQTGFRTVVVAGGV
                     GANRKLRETFGNMTVQIPTPKGKPKHPSEKVSVFFPPTAYCTDNGAMIAFAGAMHLKT
                     GREAGAFNVRPRWPLSEIVK"
     gene            complement(3684..4871)
                     /gene="ccsB"
                     /locus_tag="ACFOCA_000556"
     CDS             complement(3684..4871)
                     /gene="ccsB"
                     /locus_tag="ACFOCA_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HFC6987319.1"
                     /translation="MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTR
                     SGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIF
                     LLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
                     FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVF
                     GFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAE
                     LVSLRAEEKGGKSWLPQSVLIEEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWD
                     PKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSY
                     GTL"
     gene            complement(4864..6816)
                     /locus_tag="ACFOCA_000557"
     CDS             complement(4864..6816)
                     /locus_tag="ACFOCA_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HFC6987320.1"
                     /translation="MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGF
                     LGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSL
                     LDVKIAPEVAKRYLEVQGFQGKTVSREGGSVLIAAKKGTMNKWGYIFAHVALIVICLG
                     GLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVV
                     FLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNH
                     PLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLE
                     FDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAV
                     EYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGR
                     KRLVADATKDAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYF
                     YEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGF
                     SEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSAR
                     SERDLQKEFPKHVESLQRLGKDLNHD"
     gene            complement(7093..7716)
                     /locus_tag="ACFOCA_000558"
     CDS             complement(7093..7716)
                     /locus_tag="ACFOCA_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6987321.1"
                     /translation="MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN
                     SGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAK
                     QQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLG
                     GQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR"
     gene            7922..8551
                     /gene="yihA"
                     /locus_tag="ACFOCA_000559"
     CDS             7922..8551
                     /gene="yihA"
                     /locus_tag="ACFOCA_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFC6987322.1"
                     /translation="MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLT
                     NHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQ
                     RKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVK
                     KLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPKEN"
     gene            complement(8672..11068)
                     /locus_tag="ACFOCA_000560"
     CDS             complement(8672..11068)
                     /locus_tag="ACFOCA_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFC6987323.1"
                     /translation="MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHY
                     QPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWG
                     VARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDK
                     ILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPE
                     RAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVQKIDQSALYVAEMVRQELYE
                     KYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVE
                     ETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEK
                     MGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFN
                     RAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRY
                     SGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETT
                     PLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLEAGQNAPQAIDPRNAYIM
                     YKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPK
                     SMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLT
                     LDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
                     "
     gene            11220..12335
                     /gene="pilM"
                     /locus_tag="ACFOCA_000561"
     CDS             11220..12335
                     /gene="pilM"
                     /locus_tag="ACFOCA_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HFC6987324.1"
                     /translation="MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQL
                     SGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQ
                     NLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVA
                     SRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAA
                     QTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVA
                     NYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQ
                     CVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL"
     gene            12338..12937
                     /locus_tag="ACFOCA_000562"
     CDS             12338..12937
                     /locus_tag="ACFOCA_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HFC6987325.1"
                     /translation="MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYL
                     FIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKVEELQLKRLQAA
                     KILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
                     SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN"
     gene            12938..13585
                     /locus_tag="ACFOCA_000563"
     CDS             12938..13585
                     /locus_tag="ACFOCA_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HFC6987326.1"
                     /translation="MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFK
                     SQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIP
                     NLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLS
                     RIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK"
     gene            13603..14148
                     /locus_tag="ACFOCA_000564"
     CDS             13603..14148
                     /locus_tag="ACFOCA_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HFC6987327.1"
                     /translation="MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAP
                     TLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILK
                     SGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
                     LLLNSSDKNTEQAAAPAAEQN"
     gene            14167..16452
                     /gene="pilQ"
                     /locus_tag="ACFOCA_000565"
     CDS             14167..16452
                     /gene="pilQ"
                     /locus_tag="ACFOCA_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HFC6987328.1"
                     /translation="MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKV
                     SFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLV
                     LNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQATAPSTKSAV
                     SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQTAAPAKQQAAAPAKQT
                     NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKT
                     PVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKT
                     FTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQ
                     ARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRS
                     ILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQV
                     MIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINL
                     PITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIP
                     FTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTIL
                     CISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDR
                     RELLIFITPRIMGTAGNSLRY"
BASE COUNT         4592 a         4833 c         3880 g         3708 t
ORIGIN      
        1 aatgccgtct gaactgttca gacggcattt ttgattttca aaccggaatt acagccccgc
       61 tgccgccctc aatgcagcag ctttgtcggt gcgctcccaa gtgaactcag gttcttcgcg
      121 gccgaaatgt ccgtaagcgg cggatttact gtaaatcggg cgcaagagat cgagcatttg
      181 gacgatgcct ttggggcgca ggtcgaaatg ttcgcgaact aaggtaatca gtttttcctc
      241 gctgattttg cctgtgccga aagtgtcgat ggaaatcgaa gtcggttcgg caacgccgat
      301 ggcgtaggaa acttggattt ggcattgggt tgccaaaccg gcggcgacga tgtttttcgc
      361 aacgtagcgg caggcgtaag cggcggaacg atccactttg gacgggtctt tgccggagaa
      421 cgcgccgccg ccgtgcggag ccgcgccgcc gtaggtatca acgatgattt tacggccggt
      481 caaaccgcag tcgccttgcg ggccgccgat gacgaagcgg ccggtcgggt tgatcaggta
      541 tttggtttcg tcggtcagca gttcagacgg caggacgggc ttgataatct gctcaatgac
      601 ggcgtttttc aactcttcat aaccgatttc cgggtcgtgt tgcgtagaga ggacgacggt
      661 atcaatgcgt tttactttgc cggattcgct atcgtaaacc acggtcagtt gggcttttgc
      721 gtcgggacgc agccaaggca ggaggccgtc tttgcgtaat tcgctttgac gctgcatcag
      781 gcggtggctg taatagatgg caaacggcat cagggtcggg gtttcgtcgc aggcatagcc
      841 gaacatcaaa ccttggtcgc cagcgccttg gttcaagtca atgccttcgc cttcgttcac
      901 gccttgggcg atgtccggag attgctggtc gtagtacacg ccgaccgcgc agccgttggc
      961 atcaaagccc agctcggagg agttgtagcc gatgcgtttg atggtttcgc gtgcgacttt
     1021 gatgtagtcc acttgggcgg tggtggtgat ttcgcctgcc aatacgcaca agcctgtgtt
     1081 gaccaaagtt tctgcggcga cacgcgcttt ggggtcttgc gccaagatgg catccaaaat
     1141 cgcgtcggat acttggtcgg caactttgtc cggatggcct tcggataccg attcggaagt
     1201 aaacagatat tcgctcattg agattttcct tgaaaaacaa accatcttct tcagacggca
     1261 tgttgtatga acataatgtc gacagcggga aatatagcaa aatttcccta ttcataccat
     1321 tcagttgaga aatattccca tttgaatggc actttggaat ctctgcccgt acgtttctta
     1381 caggcaaaaa aattcccgca tcaagcgggt ttggattgct ctggtgagcc acatcggctt
     1441 ttcaaccgtc caccttactt ttccttttga aaagcaggtt ggcatggaat tcccaactct
     1501 taatgcagcg cggatggtag cagaaaagcc tttccgccgc aatacttccc tttttcagac
     1561 ggcatgtttc gtttacaatt cgggctgttt ccccctttgc gaaccgccat gcacatcctg
     1621 ttgaccgccc tgctcaaatg cctctccctg ctgccacttt cctgtctgca cacgctggga
     1681 aaccggctcg gacatctggc gttttacctt ttaaaggaag accgcgcgcg catcgtcgcc
     1741 aatatgcgtc aggcaggcat gaatcccgac cccaaaacag tcaaagccgt ttttgcggaa
     1801 acggcaaaag gcggtttgga acttgccccc gcgtttttca gaaaaccgga agacatagaa
     1861 acaatgttca aagcggtaca cggctgggaa catgtgcagc aggctttgga caaacacgaa
     1921 gggctgctat tcatcacgcc gcacatcggc agctacgatt tgggcggacg ctacatcagc
     1981 cagcagcttc cgttcccgct gaccgccatg tacaaaccgc cgaaaatcaa agcgatagac
     2041 aaaatcatgc aggcgggcag ggttcgcggc aaaggaaaaa ccgcgcctac cagcatacaa
     2101 ggggtcaaac aaatcatcaa agccctgcgt tcgggcgaag caaccatcgt cctgcccgac
     2161 cacgtcccct cccctcaaga aggcggggaa ggcgtatggg tggatttctt cggcaaacct
     2221 gcctatacca tgacgctggc ggcaaaattg gcacacgtca aaggcgtgaa aaccctgttt
     2281 ttctgctgcg aacgcctgcc tggcggacaa ggtttcgatt tgcacatccg ccccgtccaa
     2341 ggggaattga acggcgacaa agcccacgat gccgccgtgt tcaaccgcaa tgccgaatat
     2401 tggatacgcc gttttccgac gcagtatctg tttatgtaca accgctacaa aatgccgtaa
     2461 cgaaaataaa aatgccgtct gaacaatttc agacggcatt ttgtcatttg acgatttccg
     2521 acagcggcca gcgcgggcgt acattaaatg caccggcttc cctacccgtt ttcaaatgca
     2581 tcgcgcctgc aaaggcaatc atggcaccgt tgtccgtgca gtatgccgtc ggcgggaaaa
     2641 acacgctgac tttttcggac ggatgtttcg gcttgccttt gggggtcggg atttgcaccg
     2701 tcatgttgcc gaaagtttca cggagtttgc ggtttgcacc gaccccgccg gcgaccacta
     2761 cggttctgaa ccctgtctgc aacagggctt ttttcacttt cgccgccaac acatcgacta
     2821 ccgcatcttg aaacgcacgg cagatgtcgt tgcgtgtctg ctcaggaatg tcatccgccc
     2881 cgttttccgc gcgcactttc tcgacggcag tcaaaacagc ggttttcaaa cctgaaaaac
     2941 tcatctgcaa atcgtcggaa tgaatcatcg ggcgcggaaa aacaaacgct tcgggcctgc
     3001 ccgattccgc aagttccgac agtttcgcac cgcccggata cggcaagccc agcagtttcg
     3061 ccgttttgtc gaatgcctcg cccgccgcat catcgacgct ctcgcccaaa agcgcgtagt
     3121 cgcctatgcc cctgaccgcc ataatctgcg tatgcccgcc cgaaaccaac agcgcgacaa
     3181 aaggaaagtc gggtttttcc tccgccaaca gcggcgacag cagatgccct tccaaatgat
     3241 ggacgggaat aacaggctta tccagcgcaa aagccaaggc attggcgtaa ctcgaacccg
     3301 ccagcaacgc gccgcccaaa ccgggcccct gcgtaaaggc aaccgcgtca atgtcgccat
     3361 acgatgcgcc tgcctgcgcc agacagcctt ccgtcaacgg aacaaggcgg cggatatggt
     3421 cgcggcttgc cagctccggc acaaccccgc cgtattcggc gtgcattgcc atctgcgtgt
     3481 gcagacagtg cgcccgcaat cctcgttcgg tgtcatacag cgcaacgcct gtttcgtcgc
     3541 aagaagattc gattcccaat accaacatgg tctgatgccg ttaaaaactg aaaaacgtat
     3601 tctagcggat ttcggcacga ctgccgtatc ccaaaaacgg aacatgccgt ctgaagccct
     3661 tcagacggca tcgtcgcacc gtatcaaagc gttccgtaag aatgcagccc gctcaaaaac
     3721 atattcacgc cgataaaggc aaatgcggtt acgaacaaac cgataatcgc ccaccacgcc
     3781 agcactttgc cgcgccaacc ggcaaccagc cgcaagtgca gccaaacggc gtaattgagc
     3841 cagacgatga acgcccacgt ctctttcggg tcccaactcc aatagcgtcc ccaagcatcc
     3901 gccgcccaca gcgcacccaa aatggtggca atggtaaaga acagaaagcc gacggcaatc
     3961 gccttataca taacttcctc aatcaacacg gattgcggca gccacgattt cccgcctttt
     4021 tcttccgcac gcagggaaac cagttcggca ataccgagca tcgcggaaat gcaaaacgcg
     4081 ccgtaaccga taaagtttgc cggaacgtgg attttcatcc accaagattg caatgccgga
     4141 atcagcggct ggatggtatg cgcctcgcgg gacacgctgt accacaagac aaatccaacc
     4201 acgaccgcca taaagccgaa cacgaagccg cccaatttct gtatggcgaa cttaccttca
     4261 taataaagat acatcagcgc ggtaatcacc aaaaacagga tgaacacttc atacaggttg
     4321 gaaaccggaa tatgccccgc atcgggacgg agcagatagc tttcgtgcca acgtaccagc
     4381 agaccggtaa agcctgctac ggcagacacc catgcaaaca cggttcccat acccaacagc
     4441 gtgttggtcg gcacattttt tacgcttgcc aaaaccgcgc ccgaaatata ggcgaacagg
     4501 gcgaagaaga caaaggcgca ctgccacata atcgccgact ggctgctgag gaaataccgc
     4561 aacaggaaaa tctctgccga tttgatgttg ccgccataca aaccgacggc ggcataggca
     4621 agcaatacgc ttaaaggaac aaaccagcgc atcggtttga aaaaccaacc caaaaacacg
     4681 gcaataccgg cacttgccca caacatgacc gtttcgtaaa tgtccatatg cataccggaa
     4741 cgggtctgta cgaaaaccgt agccgcaaaa accagcacgg caaataccca atcccaaaga
     4801 ttcagattgc tgatcaaaga cttctgaatc agcagctcgt gttccggaag ggttttatag
     4861 tgttcagtca tgattcaagt ccttgccgag ccgttgcaga ctctcgacgt gttttggaaa
     4921 ttccttctgc aaatcccgtt cgctgcgggc cgaagacatg gcaaaacgga ttttgccgtc
     4981 tgaaaacaat acccacgccc gtttttcgcg cacataaaac atcaataccg tacccaatac
     5041 caacagcacc gagccgagat agaccaaaag cgcacccggg gaacgggtca tctgcaaacc
     5101 cgacgaacgc acctcggaaa acccatcaag ttgcagcagc ataggcgcgg gatattcggt
     5161 caaacccgtg tacgcatcca tactgtgcag caggaaacgg ttccgcgctt catcctgctg
     5221 ccattcgggc aagccgtacc ggcgtatggt ttcatccaaa gcagcgttca tcacgccgta
     5281 aagcatttcg tagaaataac cctgcatctt atcctgctgc tctttcggga tattggacgt
     5341 aataaattcg tccaatccca aatagccttt ttgtgcaaag atgttcagcg tgttttccgc
     5401 agccagcatg aattgttcgc ggatttcggc aggtgcgtct ttggttgcgt cggcaaccag
     5461 acgtttgcgc ccttccccat ctttcaaaaa ctcacgcaat gccataaagg tgtccgcttt
     5521 caactgcttg tccaagggga tacgcagcca gcggtattgc tgctgcaagc cgctgcgcgt
     5581 gccggtaatc caaaaataat cctgttcctg caaaaccggc agcatatagt ttttatattc
     5641 gaccgcctgc cctgccgcat cacggatacg gtaaacaatg gaagggccga tattggtgta
     5701 ttttttacct tcctgagtaa cggcgcggac atcgttcagc gtggatttca ggcttttttc
     5761 ccgttccgcg ccctcgctca tgtcctccac attcatagaa gtgaactgat cgaactcaag
     5821 acgatatttg tgtttgccaa tttccaacgg aaactggtgt atggatgttg ccttcaacac
     5881 gacaggctcg cgcgaagcat cacccaaatt ccacgccttg aatgtcaaat ccgaaccgcc
     5941 gtcggcaaaa ctcgcctgat aaatcgtgat gccgtgcaag gtcaaaggat ggttcacgcg
     6001 gatggtgcgc tcgagtttct caccggttgc cttgtccgtc acttcaatat cgctggcgaa
     6061 atcacgcggc atacccgtat tgtaaaaatc gatatggaat tttttcagtt tgacttcaaa
     6121 aggcaagtcc tgaaccaata tcccgttgtc ggcattcagg aaaaccacat ccgcactctg
     6181 cccctcggaa atattgacgt tgcccctaaa tgagagattg gacgcactca aaatactttc
     6241 gggcttgaaa tccttggcat aaaccgcctg attgtccgga acaatccgac cggtcagcat
     6301 acccagtttc aacagcaggt tactgtctat caacccgccc aggcaaatga caatcaaagc
     6361 aacatgggca aagatatagc cccatttgtt catcgtgcct tttttggcgg caatcagaac
     6421 cgacccgccc tcacggctga cggtttttcc ctgaaaaccc tgcacctcca gataacgttt
     6481 ggcaacttcg ggggcaattt ttacatccaa cagcgaagaa tggcgcatcg ccgccagaga
     6541 tttttcttta accttttccc gaaaagactt catttcgcgc cagaacggcg gcacattgcg
     6601 aatcaggcac aaactggtag aaaccaccaa aaacatcatg ataacgacaa accatgccga
     6661 agcatagacg tcatacagtc ccagaaaacc aaaaatctgc gcccaaaaag gtccgaattt
     6721 gaccaaataa tccgtctgcg gctggttttg ctgcaacacc gtaccgataa ccgatgcaat
     6781 acccagcaga ctgagcaaag cgaccgcaaa gcgcatggag ctgaaaaaag cgaaccacgg
     6841 acgggaaaga agtgggggag atctacggga tttactcatt gtgtgtttat tccgccatca
     6901 ggaatatggg aaagcagaat tgggcaaaca gaaaacaacg tcccgattct actgtcttga
     6961 tgctttttat ttcaagacaa tgaagacagc ctgcatcgat tccaacggtt gcgattgaaa
     7021 aaacttatcg cagaattgcc tgaagccgtc tgaaaacttt tcagacggcc tctaaaacag
     7081 actattgcgg aattaacgca aaccttggat aaagttggcg accgctttca aatcttcttc
     7141 agacatacgg tttgcaatat cttccatgat ggtattttta cgctgaccgg acttgtaggc
     7201 attcatctgt tcaacaatat atgcctgatg ctgaccgccc aaacgcggat aagcctgaat
     7261 ttcgcttccg cctcccggca tacccgcacc gctcggaccg tggcaggaca tacacgccgg
     7321 cactttttta tcgctcaaac cgccgcgata gattttcgca cccaattcgg gattttcctt
     7381 aggattggct tcaccggatt tgggctgctg tttggcatag aatgcggata cgttcaaaat
     7441 atcctgatcg ctcaaattca ttaccaccgg tttcatcaca gctgccgaac cgtgggtgcg
     7501 tttaccgtcg cggatgccga tagtttgatg atagatgtaa gcagtatgct gtgccgccaa
     7561 acgcggatac atcgcaatgc cgctgttacc gtctgctgca tggcaagccg cacaaaccgt
     7621 tgcggcaacc tgtttgcctt tttccacgtc tgctttggga gaggcggaaa ccgcaccggc
     7681 agccaaaaca aaggccaata aagtcaatcg tttcatggag tgctcctgat tacagcattg
     7741 gataacgcaa caatgctctt tttatattca aatacgggat ttttgacccg attaaaaccg
     7801 atgattctgt aaacgtgtta ttctatacta aatttacatt aaattaccac tgtgtttcac
     7861 ataaaaccaa ccgcatattt ttgctgtcgg acaaacggcg gcggaaaaca aggatatgcc
     7921 catgaacctt tttcaaaacg ccaaattctt cacgacggtc aaccacctta aagacctgcc
     7981 cgacacccct ctcgaaattg cctttgtcgg caggagcaat gccggaaaat ccagtgccat
     8041 caataccctg accaaccatg tccgtcttgc ctacgtttca aaaacacccg gacggacgca
     8101 gcatatcaac ttcttcgagc tgcagaacgg caattttatg gtcgatttgc ccggctacgg
     8161 ttatgcccaa gtccccgaag cagtacgcgc acattgggtc aatctgctcg gcgactatct
     8221 gcaacagcgc aaacagctta tcgggctggt tttgattatg gatgcccgcc atcctttaaa
     8281 agaactcgac atccgtatgc tggacttttt ccacacgacc ggcagaccgg ttcacatcct
     8341 gctgtcaaaa gccgacaaat tatccaaaaa cgaacagata aaaaccctgt cccaagtcaa
     8401 aaaactgctc aaaccttatt ccgacaggca aaacatcagc gtacagctgt tttccagcct
     8461 gaaaaaacaa ggtattgacg aggccaaccg aactgtcgga agctggtttg acgcagcaga
     8521 tgccgccgct tcctctccaa aggaaaactg accccaatta tacggaaacc gtatttcccc
     8581 cacttgaccg accgcaaaca tttaaaaaat tgccactgcc aaatctaaaa tgccgtctga
     8641 aagacttttc agacggcatt ttgcggagtc tttaaaacag agaatccaac tgctgctgtt
     8701 tggaaccagt attactcgga agcaccggcg tttcctgcat atcttggcgg acttcgtcat
     8761 ccgccgcctg ccgtccgcct tctgccgcgc ccccgtcatc ttcttttgcc cgtcgggaag
     8821 gttgcggcgc aataccgctg ttgtccagcg tcaagcccgg atcggttacc atacgttcct
     8881 tcatatagta ttcgccattg ctgctgacca caccttcagg cattttcatc cccttgccct
     8941 gctttccttt caacgcaaaa cgcatatagt ccacccaaac cggcaccgca atcgtaccgc
     9001 cgtagccgac acgccccata ctcttaggtt tgtcgaagcc gatatatacg gcagtaacca
     9061 catcagggtt aaaaccgaca aaccacgcat ccttattgtc attggtcgta cccgttttac
     9121 cggcaatatc cgttcttccc aacgcagctg ccccccttgc cgtaccgaca cggaccacat
     9181 cctgcataat cttatacata atataggcat tgcgcggatc gattgcctga ggcgcatttt
     9241 gcccggcctc caaaggttgc atttgggcgc gcaacctgcc gtctctgtca taaatcttat
     9301 cgattacgtg cgaagaaacc ctatatccgc cgttcgcaaa tacgctatat gcctccgcca
     9361 ctttcaacgg cgttgtctcg cccgtaccta aagccataga caggcttgcc ggcagctcgg
     9421 acgacctgaa gccgaaacgc cggatatact gttgcgcgta accgacaccg atagacatca
     9481 aaatacggat ggaaaccata ttcttggaag ccgtcagagc ctgtctcaaa gtaatgtagc
     9541 cggaatatct gccgtctgaa tttttaggtg tccaaaccga accgttcggc cctttccccg
     9601 gcagggaaat cggcgcatcg ttaaccactg tggacgcggt catcccctta gataatgccg
     9661 ccgaatagac aaacggctta aaggtcgaac ccggctgccg cattgcctga acggcacgat
     9721 tgaatgtttt gctgtgaaaa tcataaccgc cgaccagcgc gcgcacagct ccggtttttg
     9781 catccagcga aaccaaagcc ccctgcagca acggctcttg aaccaccgcc caacgcccgc
     9841 cgttgttttt gacacggatg accgcgcccc tgcggatacg gtcctccccc attttttcat
     9901 tattgaccgc gcgggccgca aaacccaagg cgcgcctgtc aagcgtaacc cgcctgccgc
     9961 cgggcagctg tatgacgaca tttttctttt tagtcacatc caacacaacg gcgggaacca
    10021 ttttatcgac ggtatagagt cccgacagat actggctgac agtctcctcg acatcttcac
    10081 tcttactcaa atcgatatag ttttccgcac cgcggtagct gctgccgcga tcgaaattcc
    10141 gtagagcctt gcgcaatgcc tcggttgcca ccttctgatg atcagcgcgg accgtggtat
    10201 aaaccttaaa accctgcgta taggcatctt caccgtattt ctcatacagt tcctgacgca
    10261 ccatttccgc cacatataaa gcactctgat cgattttctg aacaaaccgc tcgtaatgca
    10321 gttcctcatt caacgcctga tcgcgctgtt gcacggtaat catcttctcc tcgagcatat
    10381 tgttcaaaat atacttctgg cgcaacttgg cacgttccgg attaacaatc ggattatagg
    10441 cagacggagc cttgggcagt cccgcaagca tggcggcttc cgccaaagtc aaatctcgga
    10501 cattcttatt gaaatagatt tgcgcggcag atgcaaaacc ataggcgcgc tgaccgaggt
    10561 aaatctgatt gaaatacaac tcgaggattt tgtctttgct taaagactgc tcgattttat
    10621 aggcaagcaa cacctcattg aatttgcgtg tgaacgtttt ttcactgctc aaataaaaat
    10681 ttttcgccac ctgctgcgta atcgtactcg cacccgactg cacgctgccg gacacgacat
    10741 tgccgacggc agcgcgggca acaccccaaa catccacccc ccaatgccgg taaaagcgtt
    10801 tatcctcggc ggcgataacc gcattccgca acacctctgg gaaatcgccg atttttgtaa
    10861 attcgcgccg ctgctcccca tacataccga tgacttcccc atccgccgaa taaatagtca
    10921 acggcatttt aggctggtaa tgctgcaaag aatccaaaga cggcagtttc ggatacgtta
    10981 ccaaaatagc aatggcaacc aaacccactc caaatacaca aaacccaaaa accaaaccaa
    11041 aacaagtcgt taaaatcttt ttaatcatag ctgaataata atttaccatt attggtatta
    11101 aataaagtaa aatagcaacc gatttctaca aagcacggtt tcaatgtgca aagaacaagg
    11161 aatccattac ggataccgaa acggttactc actgtacaaa taaagcagga actttcatca
    11221 tgcgcttgtt taaaagcttg aaaaacccta aaaaaacaga tgccaagctc cctaaaaaat
    11281 cttcgggact caataaccgc gcggcaatcg gcatcgatat cgaccagcat tccatcaaaa
    11341 tggtccaatt gtcaggacgt agtttaaacc aaattcaatt ggaaaaatac gtcattgcca
    11401 aattaccaaa gaatatcatt caaggcaata aagtccaaaa ttacgatcaa cttgttacat
    11461 atttgcaaca agcctatgcc aaactgggta cgtcgtgcaa aaacatcatc gcgtccgtcc
    11521 cgcaaaatct ggcaaccatc gaacaattga cctacacaga caaagatgca gaattagacc
    11581 tgcaggggtt cgtggagtcc tccatctccg aagtcagctc gatatcgctc gaagaagcca
    11641 attacgacta tcaggtcttg tcccaatcgg ccgccggcga agctgtgttg gccgtcgcat
    11701 cgagaaagga tgaaatcgaa cccctgattg acgcattcaa cgccgccggt atgaaattat
    11761 ccgcgcttga tgtggacatt ttcggacaat acaacgccta cgcgctatgg ataaaccatt
    11821 tcgcccccga gcttgcagcc gaaaaagtcg ccattttcgg cgtatatgcc gcacagacct
    11881 acgccttggt catccaagac ggaaaaatcc tatacaaaca ggaaacctcc gtcagcgaag
    11941 aacagctcaa ccaactcatc cagcgcacct atcaggtaac agaagaaaaa gcggaagaaa
    12001 tcatcaactc cccgcaaaaa ccttccgatt accaagaaag cgtggcaaac tatttcaacc
    12061 agcagattac ccaagaaata caaagggtct tgcagtttta ttacaccacg cagaccgcag
    12121 acgatatgac cgacatcaag catatcctgc tgaccgggga agcggcgcgc caggaaggca
    12181 tcgcccaaac cgtcgcctca caaaccaatg cagatgtaca atgcgtccat cccgcgcgtt
    12241 attttgcgga caacctcaaa acagacaaac aacaattcga acttgatgcg ccgacactga
    12301 ccagggcgtt cggtttggcg gtacggggat tataattatg aacaatttaa tcaaaatcaa
    12361 cctcctcccc tacagggaag agatgaacaa gcgcaaacag cagcagttta aaacgctgat
    12421 gtacggtgcc gtgctgacgg gcgttgccgc cgttgcggca acctacctgt ttatcgacaa
    12481 tatgatcaat aaccagtcgg aaagaaacac gctgctggaa acctccatcg cacacttgga
    12541 taccgagctg tcggaaatac aaaagctcaa acaggaaaaa gatgccttcc tgattaagaa
    12601 aaacaaagtc gaggagctcc agctcaaacg cctccaagcc gcaaaaatcc tcgacagcct
    12661 gaatgaggcc gtccccggaa gcacctacct gacctcgctg gatgccgtta ccgccgactc
    12721 ttatcggctc agcggcagga catccagcga caaccgcgtt gccgccatga tgagggcgat
    12781 gcccaatacc ggcatattca agcaacccga attgttaagc atcaagaaaa acaattcgca
    12841 tcaagaattt acccttcagg caacattaca acccatcgta aaggcggccg aatccaaaga
    12901 gaatccggct tcgggaaacg cacaggaggc aaactgaatg gcttctaaat catctaaaac
    12961 caacttggat ctcaacaacc ttcacctgct caaccttcct gccaggcttt ttatcgccct
    13021 gctggccgtt gccgccgtgc tggggctcgg ttatgccgga ttgttcaaaa gccagatgga
    13081 atcccttgag gaatacgaag caaaagaaac cgaactgaaa aacacctaca aacagaaaag
    13141 tatcgacgcg gccagcctga acaacctgag ggacgaactt gcctcaatcc gctctgcctt
    13201 cgatatcatg ttgaaacagc tgccgacaga tgcagaaatt cccaatctgg ttcaagagct
    13261 tcatcaggca ggttcgagca acggcctgcg cttggacagc gttatgcccc aacctcccgt
    13321 agatgacggc cccatcaaaa gattacccta ttccatttcc attaccggaa attacgaaca
    13381 gatcagccaa tttacccgcg atgtcggcag cctctcccga atcattaccc ttgagtcgct
    13441 gaaaatcgcc caatctccgg aaaacggcgg caatcctgac ggcaagagca gcatcctgaa
    13501 cctcagtgcc attgccacca cctaccaagc aaaatccgta gaagagcttg ccgcagaagc
    13561 ggcacaaaat gccgagcaaa aataacttac gttagggaaa ccatgaaaca ctatgcctta
    13621 ctcatcagct ttctggctct ctccgcgtgt tcccaaggtt ctgaggacct aaacgaatgg
    13681 atggcacaaa cgcgacgcga agccaaagca gaaatcatac ctttccaagc acctaccctg
    13741 ccggttgcgc cggtatacag cccgccgcag cttacagggc cgaacgcatt cgacttccgc
    13801 cgcatggaaa ccgacaaaaa aggggaaaat gcccccgaca ccaagcgtat taaagaaacg
    13861 ctggaaaaat tcagtttgga aaatatgcgt tatgtcggca ttttgaagtc tggacagaaa
    13921 gtctccggct tcatcgaggc tgaaggttat gtctacactg tcggtgtcgg caactatttg
    13981 ggacaaaact acggtagaat cgaaagcatt accgacgaca gcatcgtcct gaacgagctg
    14041 atagaagaca gcacgggcaa ctgggtttcc cgtaaagcag aactgctgtt gaattcttcc
    14101 gacaaaaaca ccgaacaagc ggcagcacct gccgcagaac aaaattaaga agaggattac
    14161 tccattatga ataccaaact gacaaaaatc atttccggtc tctttgtcgc aaccgccgcc
    14221 tttcagacag catcggcagg aaacattaca gacatcaaag tttcctccct gcccaacaaa
    14281 cagaaaatcg tcaaagtcag ctttgacaaa gagattgtca acccgaccgg cttcgtaacc
    14341 tcctcaccgg cccgcatcgc cttggacttt gaacaaaccg gcatttccat ggatcaacag
    14401 gtactcgaat atgccgatcc cctgttgagc aaaatcagtg ccgcacaaaa cagcagccgt
    14461 gcgcgtctgg ttctgaatct gaacaaaccg ggccaataca ataccgaagt acgcgggaac
    14521 aaagtttgga tattcattaa cgaatcggac gataccgtgt ccgcccccgc acgccccgcc
    14581 gtaaaagccg cgcctgccgc accggcaaaa caacaggcta ccgcaccgtc taccaagtcc
    14641 gcagtatccg tatccaaacc ctttaccccg gcaaaacaac aggctgccgc accgtttacc
    14701 gagtccgtag tatccgtatc cgcaccgttc agcccggcaa aacaacaggc ggcggcatca
    14761 gcaaaacaac agacggcagc accagcaaaa caacaggcgg cagcaccagc aaaacaaacc
    14821 aatatcgatt tccgcaaaga cggcaaaaat gccggcatta tcgaattggc tgcattgggc
    14881 tttgccgggc agcccgacat cagccaacag cacgaccaca tcatcgttac gctgaaaaac
    14941 cataccctgc cgaccacgct ccaacgcagt ttggatgtgg cagactttaa aacaccggtt
    15001 caaaaggtta cgctgaaacg cctcaataac gacacccagc tgattatcac aacagccggc
    15061 aactgggaac tcgtcaacaa atccgccgcg cccggatact ttaccttcca agtcctgccg
    15121 aaaaaacaaa acctcgagtc aggcggcgtg aacaatgcgc ccaaaacctt cacaggccgg
    15181 aaaatctccc ttgacttcca agatgtcgaa atccgcacca tcctgcagat tttggcaaaa
    15241 gaatccggga tgaacattgt tgccagcgac tccgtcaacg gcaaaatgac cctctccctc
    15301 aaagacgtac cttgggatca ggctttggat ttggttatgc aggcacgcaa cctcgatatg
    15361 cgccagcaag ggaacatcgt caacatcgcg ccccgcgacg agctgcttgc caaagacaaa
    15421 gccttcttac aggcggaaaa agacattgcc gatctgggcg cgctgtattc acaaaacttc
    15481 caattgaaat acaaaaatgt ggaagaattc cgcagcatcc tgcgtttgga caatgccgac
    15541 acgaccggaa accgcaatac gcttgtcagc ggcaggggca gcgtgctgat cgatcccgcc
    15601 accaataccc tgattgttac cgatacccgc agcgtcatcg aaaaattccg caaactgatt
    15661 gacgaattgg acgtacccgc gcaacaagtg atgattgagg cgcgtatcgt cgaagcggca
    15721 gacggcttct cgcgcgattt gggcgttaaa ttcggcgcga caggcaagaa aaagctgaaa
    15781 aatgatacaa gcgcattcgg ctggggggta aactccggct tcggcggcga cgataaatgg
    15841 ggggccgaaa ccaaaatcaa cctgccgatt accgctgccg caaacagcat ttcgctggtg
    15901 cgcgcgattt cctccggtgc cttgaatttg gaattgtccg catccgaatc gctttcaaaa
    15961 accaaaacgc ttgccaatcc gcgcgtgctg acccaaaacc gcaaagaggc caaaatcgaa
    16021 tctggttacg aaattccttt caccgtaacc tcaatcgcga acggcggcag cagcacgaac
    16081 acggaactca aaaaagccgt cttggggctg accgttacgc cgaacatcac gcccgacggc
    16141 caaatcatta tgaccgtcaa aatcaacaag gactcgcctg cgcaatgtgc ctccggtaat
    16201 cagacgattc tgtgtatttc gaccaaaaac ctgaatacgc aggctatggt tgaaaacggc
    16261 ggcacattga ttgtcggcgg tatttatgaa gaagacaacg gtaatacgct gaccaaagtc
    16321 cccctgttgg gcgacatccc cgttatcggc aacctcttta aaacacgcgg gaaaaaaacc
    16381 gaccgccgcg aactgctgat tttcattacc ccgaggatta tgggtacggc cggcaacagc
    16441 ctgcgctatt gatgcgtcaa aataagggca tatgttttac ggcatatgcc ctttctttat
    16501 gctttttgcc gcgaccgaaa tgccgtcatt cccgcgcagg cgggaatcca gtccgttcag
    16561 tttcggtcat ttctgataaa ttcctgttgc ttttcatttc tggattccca cttttgtggg
    16621 aatgacggcg gaaggggtaa atcctcgcaa tccaaagcct cgtcatttcc acaaaaaaca
    16681 gcaacccgga acagcaactt aaaaccccgt cattcccgcg caggcaggaa tccaacttgt
    16741 ccggttccgg ttgtttttcg tctcgtaact tttgagccgt cattcccgcg caggcgggaa
    16801 tctaggtctg tcggttcagg aacttatcgg ataaaacggt ttctccaacc ctgcgttcta
    16861 gattcccact ttcgtgggaa tgacgggata tgggtttccg tgcggacgtg ttcggatttc
    16921 cgcctgcgcg ggaatgacgg cgacagatgc ccaacggtct ttatagtgga ttaacaaaaa
    16981 tcaggacaag gcgacgaagc cgcagacagt aca
//
LOCUS       DAXIFS010000021        16661 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.021, whole genome shotgun sequence.
ACCESSION   DAXIFS010000021 DAXIFS010000000
VERSION     DAXIFS010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16661
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.021"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            119..1294
                     /locus_tag="ACFOCA_000566"
     CDS             119..1294
                     /locus_tag="ACFOCA_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFC6987329.1"
                     /translation="MLNTSLSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEF
                     AAFAGTRYAVALSNGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFA
                     DVDLNSQNISAETVKAVLTPNTKAIIVVHLAGMPAEMDGIMALAKEHDLWVIEDCAQA
                     HGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYD
                     AVYHREHAPGFRWLHESFGTNWRMMEMQAVIGRIQLKRLPEWTARRQENAAKLAESLG
                     KFASIRLVEVADYIEHAQYKFYTFVKPEHLKDGWMRDRIVNELNARKVPCYQGSCSEV
                     YLEKAFDNTPWRPKERLKNAVELGDTSLMFLVHPTLTDGEIAFCKEHIEAVLTEATR"
     gene            1342..3252
                     /gene="pglD"
                     /locus_tag="ACFOCA_000567"
     CDS             1342..3252
                     /gene="pglD"
                     /locus_tag="ACFOCA_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent dehydratase PglD"
                     /protein_id="HFC6987330.1"
                     /translation="MTLETLLALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSNEW
                     FDPANWQSFLLTAPLTIGLFVRMGLYRAVTRFISFRILSTALAGSLASAVLFFLNTLI
                     FEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEA
                     VKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQ
                     RRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMSAD
                     IEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLD
                     TEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLEC
                     ALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGN
                     VLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVL
                     DMGESVKIIDLARQMITLSGLKPNTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRK
                     TAHPRIMTADEAMLPWHELSVLLDRIRSACDRYDQQAIRTLLINAPTGFAPSDGICDL
                     LWVRETHRKNAV"
     gene            3308..4600
                     /locus_tag="ACFOCA_000568"
     CDS             3308..4600
                     /locus_tag="ACFOCA_000568"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HFC6987331.1"
                     /translation="MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARI
                     PEIDRAFADIFSKLAAEHAVENIGNYSNPQGDAALIDALTAFLNREYGWNLTADNIAL
                     TNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPK
                     IENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDSEMARLD
                     ALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAA
                     PEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLL
                     KRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTR
                     DYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV"
     gene            complement(4652..5488)
                     /locus_tag="ACFOCA_000569"
     CDS             complement(4652..5488)
                     /locus_tag="ACFOCA_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HFC6987332.1"
                     /translation="MIDLHCHSIVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIA
                     EARAEADRLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRLE
                     AIAAKLEKRGISGAYDGALALAANKEMVSRTHVAEFLIRVGHVKNKQQAFTKYLGDGK
                     SCAVRHEWATLEDCVSAVNGAGGLAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVH
                     SGNCCKNDRLNYALLAERFGMLASAGSDFHRLNDFSGGILGACPELPENCRPVWAHFS
                     RY"
     gene            complement(5798..6199)
                     /locus_tag="ACFOCA_000570"
     CDS             complement(5798..6199)
                     /locus_tag="ACFOCA_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987333.1"
                     /translation="MAIYDLNEIVTSAALGMYKGKWQNMDFEQVLQDIVQETDFTYSW
                     EYGENWAIFCLNEKSVGMLCKQIPFAIIENEKLSQKIYQEYPWILTQQVYHFDTDKIL
                     LNKYVCKLTIGIMSAISQEPISLQDLYVDTV"
     gene            complement(6304..6507)
                     /locus_tag="ACFOCA_000571"
     CDS             complement(6304..6507)
                     /locus_tag="ACFOCA_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase-like domain-containing protein"
                     /protein_id="HFC6987334.1"
                     /translation="MDTTLKNKAEAILGEPLLDEPIRPESWECCGSDCGEACIQTIYW
                     ADKARYDAQRRKLKEAGWSDDAV"
     gene            complement(6485..6718)
                     /locus_tag="ACFOCA_000572"
     CDS             complement(6485..6718)
                     /locus_tag="ACFOCA_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6987335.1"
                     /translation="MEATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNG
                     ETETRKTAKIRGGEVIEFDGARLEIADGYDPEE"
     gene            6884..10318
                     /gene="dnaE"
                     /locus_tag="ACFOCA_000573"
     CDS             6884..10318
                     /gene="dnaE"
                     /locus_tag="ACFOCA_000573"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFC6987336.1"
                     /translation="MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDL
                     MNEFGLVKFYKACRSAGIKPVGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLT
                     AAYVGKDRNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKY
                     AAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEA
                     RVCIAGGWVLTDKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITL
                     GKNFLPLFPTPDGLSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELN
                     IIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLF
                     ERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVG
                     RVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAEEADELITLAKKLED
                     LTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRN
                     LTIIEMAQNNIKNTTGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTA
                     HTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQ
                     VMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNY
                     MEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCR
                     ANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLL
                     DFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMDNADQKAANANQGGL
                     FDMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSK
                     LKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQ
                     VLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLSLALAPHHDIGGLVQLLA
                     AHQLPDTPRIPLQLSYANEKASGRLQVPPKWTVTPSSALFGELETLLGSRSVRVNW"
     gene            10361..10615
                     /locus_tag="ACFOCA_000574"
                     /pseudo
     CDS             10361..10615
                     /locus_tag="ACFOCA_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742773.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10752..11684)
                     /locus_tag="ACFOCA_000575"
     CDS             complement(10752..11684)
                     /locus_tag="ACFOCA_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6987337.1"
                     /translation="MLSQLEYGIAKENRPNRQADRFAGSVLPLAASLTHKPNIMKPIP
                     TDTFQPAILPQAFETEIKSTCTGRIYRIQTATLGEMPSEGYPVLFVLDGEAFFPALFN
                     IMQSLMPNPVTRSNAPCLIVGIGYTTGSVRDLAQRAADYTPPLGDNATADERQQFGQA
                     DRFAAFIDSELTAFLESRYTLNRNETAVFGHSFGALFGLYSLLSHRRFRRHWLVSPSI
                     WWHNRRILDFMPSENRLNGIDVCLNIGALERGSDCKRREERDMAGQAEQMAAELDRHG
                     AAVFFREYPNADHGNVPFYSLTDCVEYLRKAWQR"
     gene            complement(11754..13910)
                     /locus_tag="ACFOCA_000576"
     CDS             complement(11754..13910)
                     /locus_tag="ACFOCA_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HFC6987338.1"
                     /translation="MSVFRINMTAATVLAALSSSVFAAQTADLETVHIKGQRSYNAIA
                     TEKNGDYSSFAATVGTKIPASLREIPQSVSIITNQQVKDRNVDTFDQLARKTPGLRVL
                     SNDDGRSSVYARGYEYSEYNIDGLPAQMQSINGTLPNLFAFDRVEVMRGPSGLFDSSG
                     EMGGIVNLVCKRPAKAFQGHAAAGFGTHKQYKAEADVSGSLNSDGSVRGRVMAQTVGA
                     SPRPAEKNNRHETFYAAADWDINPDTVLGAGYLYQQRHLAPYNGLPADANNKLPSLPQ
                     HVFVGADWNKFKMNSHDVFADLKHYFGNGGYGKVGMRYSDRDADSNYAFAGSKLGMKT
                     LAGRPGCNTADDKACAVGLGTEIKQKALAFDASYSRPFRLGNTANEFVIGADYNRFRS
                     TNEQGRTTLYARGGLALNEFRSIPQVDLIANARKGVRGYSHTVATENLDEFGIYGKST
                     FHPADGLSLIGGGRLGHYKIELGEGKTLHKASKTKFTGYAGAVYDLNDNNSLYLSLSQ
                     LYTPQTNLDADGKLLKPRQGNQFEVGYKGSYMDDRLNARVSFYRMKDKNAAAPLNPNN
                     KKTRYAALGKRVMEGVETEISGAVTPKWQIHAGYSYLHSQIKTASNSRDDGIFLLMPK
                     HSANLWTTYQVTPELTIGGGVNAMSGITSSAGMHAGGYATFDAMAAYRFTPKLKLQIN
                     ADNIFNRHYYARVGGANTFNIPGSERSLTANLRYSF"
     gene            14070..14729
                     /locus_tag="ACFOCA_000577"
     CDS             14070..14729
                     /locus_tag="ACFOCA_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HFC6987339.1"
                     /translation="MTTPKLIIFDWDGTLADTTQPIIDTMRRSFAECGFPPPEAERVR
                     SLIGYSLPEIIRDLLEMPSETAVADIARTYSAHYLNPNNRNMTLFPDALPCLDKLKAQ
                     GFRLAVATGKGRAGLDNAISQTATGGYWLATACAGEYPSKPSPEMVFGICGELGFDPK
                     EALVVGDTAHDLHMAANAGAAAVGVATGAHSREQLLSAPHLAVLDGLSELPGFLARHY
                     A"
     gene            complement(14816..15784)
                     /gene="ispH"
                     /locus_tag="ACFOCA_000578"
                     /gene_synonym="lytB"
     CDS             complement(14816..15784)
                     /gene="ispH"
                     /locus_tag="ACFOCA_000578"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFC6987340.1"
                     /translation="MNEKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVH
                     NKFVVDNLREKGAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAERGFRVFDATCPLV
                     TKVHKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGKMLLVETVGDVAKLEVRNPD
                     KLAYVSQTTLSVDETKDIIAALNARFPNIRNPHKEDICYATTNRQTAVKELAEQCDIV
                     IVVGSPNSSNSNRLREVAASRGIDAYMVDNAGYLQRAWFEGKNKVGVTAGASAPEVLV
                     REVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR"
     gene            complement(15813..16340)
                     /gene="lspA"
                     /locus_tag="ACFOCA_000579"
     CDS             complement(15813..16340)
                     /gene="lspA"
                     /locus_tag="ACFOCA_000579"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFC6987341.1"
                     /translation="MVLFYRLLKNMSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQ
                     YRERVNVIPSFFDLTLVYNPGAAFSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEF
                     ATLGKTGAAMIIGGALGNVIDRLIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLA
                     VLDNIVHRKTQEEKY"
BASE COUNT         3825 a         4817 c         4333 g         3686 t
ORIGIN      
        1 acccccgtac agaccgattt tgacaacacc tgcggcgcgc gcccgattct tcggaacacg
       61 ccccccttca gacggcatag ggtcggaaat gccgtctgaa cccgacggac aaaccatcat
      121 gctgaacacc tccctttccc cgtggccctg cttcacccaa gaagaagccg atgccgtttc
      181 caaagtcctg ctgtccaaca aagtcaacta ctggacggga aacgaatgcc gcgaatttga
      241 aaaagaattt gccgcctttg ccggcacgcg gtacgccgtc gccctttcca acggcacgct
      301 ggcactcgat gtcgcgctca aagcaatggg cataggcgcg ggcgacgatg tgattgttac
      361 ttcgcgcacc ttcctcgcct ccgcctcctg catcgtgaac gcaggcgcaa accccgtgtt
      421 tgccgacgtg gatttgaaca gccaaaacat cagcgcggaa accgtcaagg ctgtgctgac
      481 cccgaatacc aaagcgatta tcgtggttca ccttgccggt atgcctgccg aaatggacgg
      541 cattatggct ttggcaaaag aacatgattt gtgggtgatt gaagactgcg cccaagcgca
      601 cggcgcaaaa tacaaaggca aatccgtcgg ctctatcgga cacgtcggcg cgtggtcgtt
      661 ctgccaagac aaaatcatga ccaccggtgg cgaaggcggt atggttacga ccaacgacaa
      721 aaccctgtgg gaaaaaatgt ggtcgtacaa agaccacggc aaaagctacg atgccgtgta
      781 ccaccgcgaa cacgcgcccg gtttccgctg gctgcacgaa agtttcggca caaactggcg
      841 tatgatggaa atgcaggcgg tcattggccg catccagctc aaacgcctgc ccgaatggac
      901 agcacgccgc caagaaaacg ctgccaaact ggctgaaagc ttgggcaagt ttgccagcat
      961 ccgcttggtt gaagtcgccg actacatcga acacgcgcaa tacaagttct acaccttcgt
     1021 caaacccgaa cacctcaaag acggctggat gcgcgaccgc atcgtgaacg aactgaacgc
     1081 gcgcaaagtc ccctgctatc aaggcagctg ctccgaagtc tatttggaaa aagccttcga
     1141 caacacacct tggcggccga aagagcgttt gaaaaacgcc gtcgaactgg gcgacaccag
     1201 cctgatgttc ttagtacatc cgacgctgac cgacggcgaa atcgcgttct gcaaagaaca
     1261 catcgaagcc gtattgaccg aagccacacg ataacccttc agacggcata tgccgcctga
     1321 aagcacatac cgccccacga tatgactctg gaaaccctgc ttgccctacc gcgcaacatc
     1381 aagaaaatct gtttcctcat acacgatttt ctgatgattt tcattgcctt ttggtttacc
     1441 caaagcctga aggccgacta ctcgaacgaa tggttcgacc ctgccaactg gcagtctttc
     1501 ctattgaccg cgccgttgac catcggcctg ttcgtcagaa tggggctcta ccgtgccgtt
     1561 acacgcttca tcagcttccg catcctctcc accgcgctgg caggcagcct cgcctccgcc
     1621 gtattgttct tcctcaacac attgattttt gaagaaaggc tgcgcctcgc cctgccgatt
     1681 gtctatttct tactgctgtt tgtttccgtg accggctcgc gtatggtttt gcgcggactg
     1741 ttgtccgaac accccaaaaa acagatgatc cctgtcatca tttacggcgc gggacggtcg
     1801 ggcagacaac tgcttgaggc cgtcaaacaa atgcgcgaat attccgccgc cgcctttgta
     1861 gacgacgacc ccaaactgtg gcacaccgtc atctacgacc ttgccgttta ccagcccgat
     1921 gccatcgcct tcctcatcga acgctacggc gtggaaaaaa tcctgctcgc catccccggc
     1981 gcgacccagg aacaacgccg ccgaatcatc aacaaactgg aagcctatcc gtgcgaagtg
     2041 ttgaccattc ccggaatgaa agacctgatg gacggaaaaa tcagcatcgg cacgctcaaa
     2101 aaaatctctg tgtccgacct gctcgggcgt gattccgtcg cgcccgacga ccgcctgatg
     2161 agtgccgaca tcgaaggcaa aaccgtcatg gtaaccggcg cgggcggctc catcggttcg
     2221 gaactctgcc gccagattat ccgccgccgc cccgaaaagc tgctgctgtt cgagttatcc
     2281 gaattcgccc tgtacgccat cgaaaaagaa ttgcgcgaaa cctgcatcca aaaacgcctc
     2341 gacaccgaaa tcctgccctt tctcggttcg gtgcaaaacc gcacgctgct cgaacacgtc
     2401 atgaccgcct tttccgttgc gaccgtctat cacgccgctg cctacaaaca cgtccccatg
     2461 gtcgagttca acaccgtcga aggcatacgc aacaacatct tcggcacact cgagtgcgcg
     2521 cttgccgcca cgacatcggg cgtaagaact ttcgtcctca tctccaccga caaagccgtc
     2581 cgccccacca acaccatggg tgccagcaaa cgcatggcgg aactctgcct tcaggcactc
     2641 gccgccgaac ccggacaaaa aacccgcttc agcatggtac gtttcggcaa tgttttaggt
     2701 tcgtccggct ccgttgtccc gctgtttgaa aaacagattg cagaaggcgg cccgcttacc
     2761 ctgacccacc ccgaaatcac acgttatttc atgaccatac ccgaagccgc ccaactcgtc
     2821 atacaggcag gcgcgatggg tacgggcggc gacgtattcg tcctcgacat gggtgaatcc
     2881 gtcaaaatca tcgaccttgc ccgccaaatg attaccctaa gcggcctcaa acccaacaca
     2941 cccgaacaac ccgacggcga catcgaaatc ctcattaccg gactgcgtcc cggcgaaaaa
     3001 ctctacgaag agctgctcat cggcgacaac gtccgcaaaa ccgcccatcc gcgcattatg
     3061 acggctgacg aggcgatgct gccgtggcac gagctctctg tcctgctcga ccgcatccgt
     3121 tcggcctgcg accgttacga ccagcaggca atccgcaccc tgctcatcaa cgccccgacc
     3181 ggctttgccc cgagcgacgg catctgcgac ctgctttggg tacgagaaac acacagaaaa
     3241 aatgccgtct gaaccttcag acggcataac gtacaaacca acctacctta cacacacgga
     3301 gtttgacatg cagttctcag cattcggcga aaaattcacg caacacagcg gcatcctcca
     3361 actgatggac gacctcggcg acgcgctcaa aagcgacaag cccgtcaata tgctcggcgg
     3421 cggcaatccg gcgcgcattc cggaaatcga tcgggcgttc gccgacatat tctccaaact
     3481 ggcggcggaa cacgctgtcg agaacatcgg caactactcc aatccccaag gcgatgccgc
     3541 gctgattgac gcgctgaccg ccttcctcaa ccgcgaatac ggctggaacc tgaccgccga
     3601 caatatcgcg ctgaccaacg gttcgcaaaa cgcgtttttc tatttattca acctcttcgg
     3661 cggcaaattc aacctttcag acggcacatc cgcagaaaaa gccattttgt tgccgctcgc
     3721 gcccgaatac atcggctatg ccgacgtgca tgtcgaaggg cagcacttcg tttccgtcaa
     3781 gcccaaaatc gaaaacgtcg aacacgaagg cgaagcaggc ttcttcaaat accgcgtgga
     3841 ctttgacgca ctggaaaacc tgcccgaact caaagcgggc aaaatcggcg cgatttgctg
     3901 ttcgcgcccg accaacccga ccggcaacgt gctgaccgac agcgaaatgg cgcggctgga
     3961 cgctttggcg cgtgaacacg ggattccgct gattatcgac aacgcctacg gaatgccgtt
     4021 ccccaacatc atttacagcg acgtaacgct gaattggcac gaaaacatca tcctctgctt
     4081 cagcctttcc aaagtcggcc tgccgggcgt tcgcaccggc atcatcgtcg ccgcgcccga
     4141 agtcgtcaaa gccgtcagca gcctgaacgc gattgtgaac cttgccccca cgcgcttcgg
     4201 cgcggccatc gccgccccgc tgctggaaag cggcgagatg aaacggcttg ccgaccaagt
     4261 catccggccg ttttaccgca atcaggcgca aaccgccgtc tcgctgctca agcgcgagct
     4321 gggcgcgtac ccgatgaaaa tccacaaacc cgaaggcgcg attttcctgt ggctctggtt
     4381 tgaaaacctg cccgtttctt cgcaaaccct gtacgaaatg ctcaaagccg aaggtacgct
     4441 gattattccg ggcgagcatt tcttcgtcgg catcgacacg cgggattacc cgcacgcggg
     4501 cgagtgcatc cgcatgagca tcgcgcagga cgctcaaacg ctggaaaaag gcatcgccgc
     4561 catcggcaaa accgtccgaa aactgtacga caacgtttaa accgcaaaaa atgccgtctg
     4621 aaaggttttc agacggcatt tttatctgca ttcaatatcg ggaaaaatgc gcccacaccg
     4681 gcctgcagtt ttccggcagt tcgggacacg cgccgagaat gccgccgcta aagtcgttta
     4741 aacggtggaa gtcgctgccc gcgctggcga gcataccgaa gcgttctgcc aaaagcgcgt
     4801 agttgaggcg gtcgtttttg cagcagttgc cgctgtggac ttcgatgcct gcgccgccga
     4861 ggtttttaaa ttcttcaaac agattgcgct tggcggtggc ggacaaatca taacgcatcg
     4921 gatgggcgat gaccgccaac ccgcccgcgc cgttgacggc ggagacgcag tcttccagcg
     4981 tcgcccattc gtggcggacg gcgcaggatt tgccgtcgcc caagtatttg gtgaacgcct
     5041 gctgcttgtt tttgacgtgt cccacccgaa tgaggaactc ggcgacgtgt gtgcggctga
     5101 ccatttcttt gtttgccgcc agcgcgagcg cgccgtcgta tgcgcccgaa atgccgcgtt
     5161 tttccagctt ggcggcgatg gcttcgaggc gtttcagacg gccttgccgc acttgcgcca
     5221 acaggttttg caggttttcg tcttgttcgt caaagtctaa gccgacaacg tgtatggtac
     5281 gcccgcgcca cgttacggag atttccacgc cgttaatcag gcgcaaaccg agcctgtcgg
     5341 cttcggcacg cgcttcggcg atgccgccgg tgtggtcgtg gtcggtcaac gccagcagcg
     5401 tgcagccgtt ttgatgcgcg aggcgcacga cttcggcggg ggaaagcata ccgtcggaaa
     5461 cgatggaatg gcagtgcagg tctatcatgg ggtgttatgt gtgtggtgaa tgaaggtcgg
     5521 gatgtttcaa tgttgttggg cagtgtggcg gcggcggtca ttttaaaaaa caggtgtatg
     5581 gcaaatgcaa aggaaaagcc gctatgccgt cattcccaac ccccaaatgt acggatagag
     5641 ccagtaggga tgggtacatt atttgtttgc attattagtt atcctgctgt atccattaaa
     5701 tcatatgctt caattaattg ttgttctagc tcttgtacca attttggatt gcgaattcct
     5761 aacgcaattt caaacagcga gttctcacta tgtacatcta cacagtatct acataaagat
     5821 cttgtaaaga tataggttct tggctgatgg cactcattat tccaatagtt aatttgcata
     5881 catatttgtt taataaaatt ttatctgtat caaaatgata aacttgttga gttagtatcc
     5941 aagggtattc ttggtatatt ttctgtgata atttttcatt ctctataatc gcgaaaggta
     6001 tctgtttaca taacatacca acagactttt cgtttagaca gaaaatagcc caattttccc
     6061 catattccca agagtatgta aaatctgttt cctgaacaat atcttgtaaa acttgctcaa
     6121 aatccatgtt ttgccattta cctttataca tacctaatgc ggcactggtt actatttcgt
     6181 ttaagtcata aatagccatt tatgttcctt gctaatttct aggtgagaca tgtataggac
     6241 tgagaccagt atgcccatta ggttcccctc tatacacatt aatagtagat gttggttccg
     6301 ttttcagacg gcatcgtccg accaacccgc ttctttcaat ttccgccgtt gcgcgtcgta
     6361 gcgggcctta tccgcccaat aaatcgtctg aatgcacgcc tcgccgcagt cgctgccgca
     6421 acattcccac gactcggggc ggataggttc gtctaaaagc ggttcgccca agatggcttc
     6481 ggctttattc ttcagggtcg tatccatcgg caatttccaa gcgtgcgccg tcaaattcaa
     6541 tcacttcgcc gccgcgtatt ttggcggttt tacgggtttc ggtttcgccg ttgcgcaaca
     6601 ccagcccttc ggcgataaac gcttttgcct gtccgccgct ttcagcaaga ccggccagtt
     6661 tcaacaggtc gcataaagcg atgtattcat tatcttcaag atagactgtt gcttccatca
     6721 ttcaatcctt ttcaataagg gcgatatttt aacatggccg tctgaaagaa agcccccttc
     6781 tgtttgattt gctttatcca accccattac atttgatttt cagacggcct ttagctgcca
     6841 accctgctac aatacgcctt ttattgttca cgccgatttt gccatgaccg agccgaccta
     6901 catccccctg cgcctgcata ccgaattttc gattaccgac ggtatggtgc ggattaaaaa
     6961 actgattgcc aaagcgcagg aatacggttt gcctgctttg ggcatcagcg atttgatgaa
     7021 cgaattcggt ttggtgaaat tttataaagc ctgccgcagc gcggggatta agcccgtcgg
     7081 cgcggcggac gtatggatag gcaatccgga tgcgcccgac aagccgttcc gtgctatgct
     7141 gattatccgc aacgatgcgg gctatctgcg cttgagcgag cttttgacgg cggcttatgt
     7201 cggcaaagac cgcaatgtcc atcatgcgga actcaatccc gaatggctgg aaaacggcga
     7261 caacagcggc ttgatttgtt tgagcggcgc gcattacggc gaagtgggcg tgaatctctt
     7321 gaacggcaac gaagacgcgg cgcgggcggc ggcgttgaaa tatgcggcgt ggtttcccga
     7381 tgcgttttat ctggagttgc aacgcctgcc cgagcgtccc gaatgggagg cttgcgtttc
     7441 gggcagcgtg aagctggcgg aggaactggg tttgccggtg gtggcgacgc atccgacgca
     7501 gtttatgagc cgcgacgatt tcaacgcgca cgaggcgcgg gtgtgtatcg caggcggctg
     7561 ggtattgacg gacaagaaac gtccgcgcga tttcacaccg agccagtttt tcattccgcc
     7621 ggaaacgatg gccgaacgtt tcgccgattt acccgaagcc ctcgaaaaca cggtggaaat
     7681 tgccaaacgc tgcaatctgc acatcacatt gggcaaaaac ttcctgcccc ttttccccac
     7741 gcccgacggt ttatcactcg atgactatct catcaaactc tccaatgagg gcttgcagga
     7801 acgcatggtt cagctttatc ccgacgaggc ggagcgtgcg gaaaaaatgc cggaatatca
     7861 ggaacgtttg gattttgagc tgaacatcat catccagatg aaattccccg gctatttcct
     7921 tatcgtacaa gactttatca actgggcgaa aacacacggc tgcccggtcg ggccgggacg
     7981 cggttcgggc gcgggttcgc tggtggcgta ttcgctgaag attaccgacc tcgatccgct
     8041 gaaatacgcg ctgctgttcg agcgtttcct aaaccccgaa cgcgtttcta tgcccgactt
     8101 cgacgtggac ttctgtcagg caaaccgcgg ccgcgtgatt gaatatgtac gcgaaaaata
     8161 cggtgcggaa gcagtcagcc agattgttac cttcggcacg atgtcgtcca aagcagtgat
     8221 tcgcgacgtg gggcgcgtac tggaactgcc gtttatgctg tgcgacaaac tgtccaagct
     8281 gattccgttg gaagccaaca aacctttggg tttggacgac gcgatgaagg cggagccgca
     8341 gattcaggaa ttaatcgaag cggaagaagc ggacgaactg attacgctgg cgaaaaagct
     8401 ggaagatttg acgcgcggtt tgggtatgca cgcgggcggc gtgttgattg cgccgggcaa
     8461 gatttccgat tacagccccg tgtatcaggc ggacgaatcc gcctcgcccg tatccatgta
     8521 cgacaagggc gacgtggaag acgtgggttt ggtgaaattc gactttttag gtctgcgcaa
     8581 cctgaccatc atcgaaatgg cgcagaacaa catcaaaaac accaccggcg acatcatcga
     8641 tgtcggcaaa attccgcttg acgaccaggt tgcctaccaa atcttccgcg atgcgaacac
     8701 caccgccgtg ttccagttcg agtcgacagg catgaagaaa atgctgaaaa cggcgcatac
     8761 gaccaagttt gaagaactga ttgccttcgt atcgctctac cgacccggcc cgatggacaa
     8821 tattcccgac ttcgtcgcgc gtatgaaagg tcaggaattc caatacatcc acccgctact
     8881 cgaaggcatc ctcgcaccaa cctacgggat tatggtgtat caggaacaag tgatgcaggc
     8941 ggcgcagatt atcggcggct actcgctcgg cggcgcggac ctgctgcgcc gcgccatggg
     9001 taagaaaaag cccgaagaaa tggtgaaaca ccgcgaaatc ttcgccgaag gcgcggcaaa
     9061 acaaggcatt tcgcgcgaaa aatccgacga aatcttcaac tacatggaaa aattcgccgg
     9121 ctacggtttc aacaaatccc acgctgccgc ctacgccctg atttcctacc agaccgcatg
     9181 gctcaaagcc cactaccccg ccgaatttat ggcggcgacc atgtcgtctg aattggacaa
     9241 caccgaccag ctcaagcatt tctacgacga ctgccgtgcc aacggcatcg agttcctgcc
     9301 gcccgacatc aacgaatcag actaccgctt cacgccgtat ccgaacatga aaatccgcta
     9361 cgcgctcggc gcgattaaag gcacgggcga agccgccgtc gaatccatca ccgccgcgcg
     9421 gcaaagcggc ggcaagttta ccggcctctt ggacttctgt gagcgcgtcg gcaaagaaca
     9481 catgaaccgc cgcaccctcg aagctctgat acgcggcggc gcattcgaca gcatcgaacc
     9541 caaccgcgcc atgctcttgg cgaacatcga cctcgctatg gacaacgccg accaaaaagc
     9601 cgccaacgcc aatcagggcg ggcttttcga catgatggaa gacgccatcg aaccggtgcg
     9661 gctcatcgac gcgccgatgt ggagcgaatc ggaaaaactc gccgaagaaa aaaccgtcat
     9721 cggcttttac ctgtccggcc acccgttcgg cccgtatgcc caagaagtcc gccaaatcgc
     9781 cccgcagaaa ctgtcgaaac tcaaaccgca agacagcgtg cgcctcgccg gattcgttac
     9841 cgccgtacgc accatgatgg gcaagcgcgg caaaatcgcc ttcgtcagcc ttgaagattt
     9901 gagcggacag gttgaaatca tggtcggcgg tcagacgttg gaaaactgcg ccgactgcct
     9961 caaagccgac caagtgctga ttatcgaatc caaagtcagc cgcgacgact acggcggcgg
    10021 cgacggactg cgtattctgg caaaccaagt catgaccctg caaacggcac gcgaacgcta
    10081 cgcccgcagc ctcagcctcg ccctcgcccc gcatcacgac atcggcggac tggtacaact
    10141 gctcgccgcc caccaactgc ccgacacgcc gcgcatcccg ctgcaactgt cgtatgccaa
    10201 cgaaaaagcg tcgggcaggc ttcaagtgcc gccgaaatgg acggttacac cgagctccgc
    10261 attgttcggc gaactggaaa cattgctcgg cagccggtcg gtgcgcgtca actggtaacc
    10321 aaaaatagaa atgccgtctg aagcccaaaa accggtttca ttcgtacttt attcgaatga
    10381 ttgaataaaa gtaactgcca agaaaaacgt attttttggt tatttcgcca gtctaaatag
    10441 agcaaccggg acgattgata tccgtgtgca tgacacagac agcaccaaag ggaaaaacgg
    10501 cattttccaa agtatcggta tcaaaaccgc cctttcactc caaaaatacc aaatcgacaa
    10561 accgggcaaa gaaatcagac cgtgccgcct gaaaaaacgc ccacccgtcc gttaaattaa
    10621 cctatccctg tttcagacgg cctgaagcag ggatttttat atcaaaataa aatgagaaag
    10681 ggagcaataa cccttaggta gctcttgtta ttttccgatg caaaacaaag cagtcatata
    10741 tttaattccc cctacctctg ccaagccttc ctcaaatatt cgacgcaatc ggtcagcgag
    10801 tagaacggga cattgccgtg gtcggcattc ggatattccc ggaaaaagac ggcggccccg
    10861 tgcctgtcta actctgccgc catttgttcg gcctgccctg ccatatcgcg ttcttccctg
    10921 cgtttacaat cgctaccccg ttctagcgcg ccgatgttga ggcagacatc gatgccgttt
    10981 agccggtttt cagacggcat aaagtcgagt atccgcctgt tgtgccacca aatcgatggg
    11041 gatacgagcc aatgccgtct gaaacggcgg tgggaaagca gggaatacag tccgaacagt
    11101 gcgccgaacg agtgtccgaa tacggcggtt tcattgcggt tgagggtgta gcggctttct
    11161 aaaaaggcgg tcagctcgct gtcgataaag gcggcgaagc ggtctgcctg tccgaactgc
    11221 tgccgttcgt ctgctgtggc gttgtctcca agcggcggcg tgtagtcggc ggcacgttgt
    11281 gccaaatcgc gcacactgcc tgtcgtgtag ccgataccga caatcaggca gggggcgttg
    11341 cttcgggtaa cggggttggg catcagcgac tgcatgatgt tgaaaagtgc ggggaaaaag
    11401 gcttcgccgt ccaaaacgaa gaggacggga tagccttcag acggcatttc gccgagtgtc
    11461 gccgtctgaa tccgatagat tcgccccgtg caggtggatt tgatttcggt ttcaaaggct
    11521 tggggcagta tggcaggttg gaatgtgtcg gtcggtatgg gtttcatgat gttcggcttg
    11581 tgggtcagac tggcggcaag cggtaaaacc gaaccggcaa agcggtctgc ctgccggttc
    11641 ggtctgtttt ccttcgcaat gccatactcc agttgtgaga gcatagggta tgcagcgcag
    11701 cttgttgtgg tttgatgatg ctgcggctgc cgtttcagac ggcatattgg tctttaaaaa
    11761 ctgtaacgca ggtttgccgt caggctgcgc tccgaaccgg gaatgttaaa ggtgttcgcg
    11821 ccgccgacgc gggcgtagta atggcggttg aagatgttgt cggcgttgat ttgcagcttc
    11881 agcttgggcg tgaagcggta tgccgccatc gcatcgaacg tggcataacc gcctgcatgc
    11941 atccctgcag atgaagtaat gccgctcatc gcgttcacgc cgccgccgat ggtcagctcg
    12001 ggcgtaactt ggtaagtcgt ccacaggttt gcgctgtgtt tgggcatcaa taggaagatg
    12061 ccgtcgtcgc gtgaattgga ggcggttttg atttggctgt gcagatagct gtaacctgca
    12121 tggatttgcc atttcggtgt aaccgcgccg ctgatttcgg tctcaacgcc ttccatcacg
    12181 cgtttgccca atgcggcgta acgggttttt ttgttgttcg ggttcaacgg tgcggcggcg
    12241 tttttgtctt tcatgcggta gaacgaaact cgggcattga ggcggtcgtc catgtagctg
    12301 cctttgtaac cgacttcaaa ctggttgcct tggcgcggtt tgagcagctt gccgtcggca
    12361 tcgaggttgg tttgcggtgt gtagagctgg gacaggctca ggtagaggct gttgttgtcg
    12421 ttcaagtcgt aaaccgcgcc tgcgtagccg gtgaacttgg ttttgctggc tttgtgcagg
    12481 gttttgcctt cgcccaactc gattttatag tgtcccaaac gtccgccgcc gataagcgac
    12541 agcccgtcgg caggatggaa ggtggatttg ccgtaaatgc cgaattcgtc gaggttttcg
    12601 gtagcgacgg tatggctgta accgcgcacg cctttgcgcg cgttggcaat caaatcaacc
    12661 tgcggtatgc tgcggaactc gtttaaagcc aggccgccgc gtgcatataa agtagtacgg
    12721 ccttgttcgt tggtgctgcg gaagcggttg taatcggcgc cgatgacaaa ttcgttggcc
    12781 gtattgccca agcggaaagg cctgctgtag ctggcgtcaa acgcgagggc tttttgtttg
    12841 atttctgtac ccaaacccac cgcgcaggct ttgtcgtcag ccgtattgca gcccgggcgg
    12901 cctgccaggg ttttcatgcc cagcttgctg ccggcaaagg catagttgga gtcggcatcg
    12961 cggtcggaat agcgcatacc gactttgccg tagccgccgt tgccgaagta atgtttcaaa
    13021 tcggcaaaca cgtcgtggct gttcatttta aatttgttcc aatccgcgcc gacaaatacg
    13081 tgttgcggca gggacggtaa tttgttattg gcatcggctg gcaagccgtt gtacggcgcg
    13141 aggtggcgtt gctggtaaag atagcccgcg cccaaaaccg tatcggggtt gatgtcccaa
    13201 tccgccgccg cgtagaaggt ttcgtgccgg ttgtttttct cggcgggacg cggagacgcg
    13261 ccgacggtct gcgccatcac gcggccgcgc acgctgccgt ctgaattgag gctgcccgat
    13321 acgtccgcct cggctttata ttgtttgtgc gtaccgaacc ctgccgcagc atgaccttgg
    13381 aacgctttgg ccgggcgttt gcacaccaga tttacgatgc cgcccatctc gccgctgctg
    13441 tcgaacaagc cgctcggccc gcgcatcact tccacacggt cgaaggcaaa cagattgggc
    13501 agcgtgccgt tgatactctg catctgcgcg ggcaggccgt cgatgttgta ttcgctgtat
    13561 tcgtaaccgc gcgcgtaaac cgaagagcgt ccgtcgtcgt tgctcaacac gcgcaggccg
    13621 ggcgttttgc gtgccaactg gtcaaacgta tcaacattgc ggtctttgac ctgttgattg
    13681 gtgatgatgc tgacagattg cggaatttcg cgcaaagaag cggggatttt tgtgccgacg
    13741 gtggcggcaa acgagctgta atcgccgttt ttctcggtgg caatcgcgtt gtacgaacgc
    13801 tgacccttaa tatggacggt ttccaaatcc gccgtttgtg cggcaaaaac cgaagacgaa
    13861 agtgctgcca aaaccgtggc ggcggtcata ttgatgcgga aaactgacat aaactgtccc
    13921 attcacataa atgataatgg ttctatttta ataaagcaca acgcggcttg ttcggaaaaa
    13981 catatcgcgc agccgacaaa ttttgtcgaa aatgcgacac gtctgcgttt tccgcataaa
    14041 atctgacttt tcaccgtaaa caacctgcca tgaccacgcc caaactcatc atcttcgact
    14101 gggacggcac gcttgccgat acgacccaac ccatcatcga caccatgcgc cgcagcttcg
    14161 ccgaatgcgg ttttccgccg cccgaagcgg aacgcgtccg cagcctgatt ggctacagcc
    14221 tgcccgaaat catccgcgac ctgctcgaaa tgccgtctga aaccgccgtt gccgacatcg
    14281 cgcgcactta ttccgcgcat tacctcaatc ccaacaaccg caatatgacg ctctttcccg
    14341 atgccctgcc ctgtctggac aagctcaaag cacaaggctt ccggcttgcc gtcgccacgg
    14401 gcaaagggcg ggcgggtttg gacaacgcca tcagccaaac cgccaccggc ggctattggc
    14461 tcgccaccgc ctgcgcgggg gaatatccct ccaaaccctc gcccgaaatg gtattcggaa
    14521 tctgcggcga actggggttc gacccgaaag aggcattggt cgtcggcgat acggcgcatg
    14581 acctgcatat ggcggcaaac gcaggcgcgg cggcagtcgg cgtggccacc ggcgcacatt
    14641 cgcgcgaaca gctccttagc gcaccgcatc tcgccgtatt ggacggtttg tccgaactgc
    14701 ccggttttct tgcacgacat tacgcctgat tggtttccgc atccggcacg cggcaaaaat
    14761 gccgtctgaa gcctgttcag acggcatttg tgttgcccaa acattcaacg cttgctcaac
    14821 gtttgcacaa atcgggtttg gtttcgccct cgcggcgcag ctctttgggc aggacgaaca
    14881 caatgctttc ttccgcaccc tcgccttcgc gtacggtttc gtgcccccat ccgcgtatgg
    14941 ttgccagtac ttcccgcacc aacacttcgg gcgcggacgc gcctgccgtt acgccgactt
    15001 tgtttttgcc ctcaaaccat gcgcgttgca ggtagcctgc attatccacc atatacgcat
    15061 cgattccgcg cgatgccgcc acttcgcgca agcggttgct gttggacgaa ttgggcgaac
    15121 cgaccacaat cacgatgtcg cactgttccg ccagctcttt gacggcggtt tgccggttgg
    15181 tcgtcgcata gcagatgtct tccttgtgcg gattgcggat attggggaaa cgcgcgttca
    15241 gcgcggcgat gatgtctttg gtttcatcga ccgagagcgt ggtttggctg acataggcga
    15301 gtttgtcggg gtttctgact tcgagttttg ccacatctcc gaccgtttcg accaaaagca
    15361 ttttgcccgg cgcaagctgc cccatcgttc cttcaacctc gacgtgcccc ttatgcccga
    15421 tcatgatgat ttcacagtct tgggcatcca gtcgggcgac ttccttatgc actttcgtca
    15481 ccagcgggca agtcgcatca aacacgcgga aaccgcgctc cgccgcttct tgccgcaccg
    15541 ccttcgatac gccgtgtgcc gaataaacca gtgtcgcgcc cggcggcact tccgccaagt
    15601 cttcaataaa caccgcacct ttttcacgca ggttgtccac gacgaatttg ttgtgaacga
    15661 cttcgtggcg cacataaatc ggcgcgccga actcttccaa agcacgttcg acaatactga
    15721 ttgcccgatc cacaccagcg cagaagccgc gcggattggc aaggatgatg gttttctcgt
    15781 tcataagccc ggtatttcgt tttcagacgg catcaatatt tttcttcttg ggttttacgg
    15841 tggacgatgt tgtccaacac cgccaacacc gcaccgacgc agataaagct gtcggcaata
    15901 ttaaaggcgg gataaaacca attttgccaa taaaacaata agaaatcgac gacatgaccg
    15961 tgtatcaggc ggtcgatgac attgcctaac gcaccgccga taatcattgc cgcacccgtt
    16021 ttgccgaggg ttgcaaactc atcgcgcaag atggcgcgta ccaaatacgc gctcaccgcc
    16081 accgccagca ccaaaaaaaa gtatttttgc cagccgccct gatcggcaag gaagctgaac
    16141 gccgcacccg ggttgtacac cagcgtcaga tcgaaaaagg aaggaatgac attgacgcgt
    16201 tcccgatact gaaacgacga cagcaccgcc cacttcgacc actggtccag cacgatggcg
    16261 gcaagtgcca atacccaata gcgcgtttta cttgaaacag atgaagacat atttttcaac
    16321 agccggtaaa agagtaccat tttacccgaa aacccccttt cctgtacccg aaacggcaaa
    16381 tgccgtaatc ttaaaacccg tcattcccga caacaccgta atctcgaaac ccgtcattcc
    16441 cgcgtaggcg ggaatccaga cctgtccgca cagaaactta tcggataaaa acagttgccc
    16501 aaaccccgcg ttctatagtg gattaaattc aaaccagtac ggcattgcct cgccttagct
    16561 caaagagaac gattctctaa ggtgctgaag caccgagtga atcggttccg tactatttgt
    16621 actgtctgcg gcttcgttgc cttgtcctga tttaaattta a
//
LOCUS       DAXIFS010000022        16643 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.022, whole genome shotgun sequence.
ACCESSION   DAXIFS010000022 DAXIFS010000000
VERSION     DAXIFS010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16643
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.022"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            241..1305
                     /locus_tag="ACFOCA_000580"
     CDS             241..1305
                     /locus_tag="ACFOCA_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-butanediol dehydrogenase"
                     /protein_id="HFC6987342.1"
                     /translation="MKAARFYDKGDIRIKDIPEPTVAPGTVGINVAWCGICGTDLHEF
                     MEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEGVDDIKVGQHVVVEPYIVHD
                     DVPTGSGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLS
                     VGHHAYVRSGAKEGDVALVGGAGPIGLLLAAVLKAKGIKVIITELSKARKDKARESGV
                     ADYILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVLDTLVEACKPAANLVIVSIWS
                     HPATVNVHSVVMKELDVRGTIAYCNDHAETIKLVEEGKINLEPFITQRIKLDELVSEG
                     FERLIHNNESAVKIIVNPNL"
     gene            1446..1769
                     /locus_tag="ACFOCA_000581"
     CDS             1446..1769
                     /locus_tag="ACFOCA_000581"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HFC6987343.1"
                     /translation="MGDSVLSTIQQTIDRRKSADPSESYVAQLLHKGEDKILKKVIEE
                     AGEVLMSSKDKDPSHLVYEVADLWFHTMILLAHHNLKAEDVLDELARRQGLSGLVEKA
                     ARTES"
     gene            1842..2165
                     /locus_tag="ACFOCA_000582"
     CDS             1842..2165
                     /locus_tag="ACFOCA_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFC6987344.1"
                     /translation="MDNCIFCKIAAKDILAQTVYEDGEMVCFKDINPAAPVHLLLIPK
                     VHFDSLAHAAPEHQPLLGKMMLKVPEIAKAAGLADGFKTLINTGKGGGQEVFHLHIHI
                     MGTPV"
     gene            2212..2415
                     /gene="tatA"
                     /locus_tag="ACFOCA_000583"
     CDS             2212..2415
                     /gene="tatA"
                     /locus_tag="ACFOCA_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HFC6987345.1"
                     /translation="MGSFSLTHWIIVLIIVVLIFGTKKLRNVGKDLGGAVHDFKQGLN
                     EGTDGKEAPKDDVIEHKKDEDKA"
     gene            2419..3105
                     /gene="tatB"
                     /locus_tag="ACFOCA_000584"
     CDS             2419..3105
                     /gene="tatB"
                     /locus_tag="ACFOCA_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFC6987346.1"
                     /translation="MFDFGLGELVFIGIIALIVLGPERLPEAARTAGRLIGRLQRFVG
                     SVKQEFDTQIELEELRKAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDGLKPWEKLP
                     EQRTPADFGVDENGNPFPDAANTLSDGISDVMPSERSDTSAETLGDSGQTGSTAEPAE
                     TDQDRAWREYLTASAAAPVVQTVEVSYIDTAVETPVPHTTSLRKQAISRKRGLRPKHR
                     AKPKLRVRKS"
     gene            3119..3889
                     /gene="tatC"
                     /locus_tag="ACFOCA_000585"
     CDS             3119..3889
                     /gene="tatC"
                     /locus_tag="ACFOCA_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFC6987347.1"
                     /translation="MSETQNEQPVQPLVEHLIELRRRLMWTVVGILVCFFGLMPFAQQ
                     LYTFIADPLMANLPKDTSMIATDVIAPFFVPVKVTLMAAFLISLPHTLYQIWAFVAPA
                     LYQNEKRLITPLVLSSVSLFFIGMAFAYFLVFPVIFKFLASVTPVGVNMATDIDKYLS
                     FILGMFVAFGTTFEVPIVVILLTKIGVVTTEQLKRARPYVIVGAFVIAAIITPPDVIS
                     QTLLAIPLILLYEAGIWFGRFFTPRSEQDGDIQPPATT"
     gene            3942..4550
                     /locus_tag="ACFOCA_000586"
     CDS             3942..4550
                     /locus_tag="ACFOCA_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HFC6987348.1"
                     /translation="MNTLYLGSNSPRRMEILTQLGYQVVKLPANIDETVRQNEDPARY
                     VQRMAEEKNRTALTLFCETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRL
                     SGKQHTVLTAVCIHYRGKTSSRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG
                     IGGIFIQSIEGSFSGIMGLPVYETVSMLQDLGYRSPLSALKP"
     gene            4559..4912
                     /locus_tag="ACFOCA_000587"
     CDS             4559..4912
                     /locus_tag="ACFOCA_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HFC6987349.1"
                     /translation="MNRQTAYFLASFSLIALIILSLSWELWIAPLRPGGSWLALKALP
                     LCLPLSGILKKKIYTYQYSSMLVLIYFAEAVMRLFDAYPAEQICAALSAVFSIIFFIS
                     CLSFVKQYKETNNAR"
     gene            4902..6716
                     /locus_tag="ACFOCA_000588"
     CDS             4902..6716
                     /locus_tag="ACFOCA_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Wzy polymerase domain-containing protein"
                     /protein_id="HFC6987350.1"
                     /translation="MPAETTVSGAHPAAKLPIYILPCFLWIGIVPFTFALRLQPSPDF
                     YHDAAAAAGLIVLLFLTAGKKLFDVKIPPISFLLFAMAAFWYLQARLMNLIYPGMNDI
                     VSWIFILLAVSAWACKSLVAHYGQERIVTLLAWSLLIGSLLQSCIVVIQFAGWEDTPM
                     LQNIIVYSGQGVIGHIGQRNNLGHYLMWGILAAAYLNGQRKIPPALGAICLIMQTAVL
                     GLVNSRTILTYIAAIALILPFWYFRSDKSNRRTMIGIAAAVFLTALFQFSMNTILETF
                     TGIRYETAVERVANGGFTDLPRQIEWNKALAAFQSAPIFGHGWNSFAQQTFLINAEQH
                     NIHDNLLSNLFTHSHNIVLQLLAEMGISGTLLVAATLLTGIAGLLKRPLTPASLFLIC
                     TLAVSMCHSMLEYPLWYVYFLIPFGLMLFLSPAEASDGIAFKKAANLGILTASAAIFA
                     GLLHLDWTYTRLVNAFSPATDDSAKTLNRKINELRYISANSPMLSFYADFSLVNFALP
                     EYPETQTWAEEATLKSLKYRPHSATYRIALYLMRQGKVAEAKQWMRATQSYYPYLMPR
                     YADEIRKLPVWAPLLPELLKDCKAFAAAPGHPEAKPCK"
     gene            6906..7583
                     /gene="misR"
                     /locus_tag="ACFOCA_000589"
     CDS             6906..7583
                     /gene="misR"
                     /locus_tag="ACFOCA_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator MisR"
                     /protein_id="HFC6987351.1"
                     /translation="MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSG
                     QYDVVVLDSMMPKMNGLDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKP
                     CTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEF
                     NLLEVLMRHAGQVVSKETLSVEALDRKLAKFDRSIDVHISSIRHKLGDASLIQTVRGL
                     GYLFVKN"
     gene            7596..9002
                     /gene="misS"
                     /locus_tag="ACFOCA_000590"
     CDS             7596..9002
                     /gene="misS"
                     /locus_tag="ACFOCA_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     MisS"
                     /protein_id="HFC6987352.1"
                     /translation="MKLFQRIFATFCAVIVCAIFVASFSFWLVQNTLAENQFNQRRTI
                     ETTLMGSIISAFRARGDAGAREILTEWKDSPVSSGVYVIQGDEKKDILNRYIDSYTIE
                     RARLFAAGHPHSNLVHIEYDRFGEEYLFFTKDWDKLQARRLPSPLLIPGLPLAPIWHE
                     LIILSFIIVVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQVDDRDDELSH
                     LAIQFDKMVEKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQPQKQEQYLKRL
                     EGELTRMDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQKNGQTVTL
                     SADGKIPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDN
                     GPGVDEMQLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKIIAENIKPNGLRM
                     RFILPKKKTGSKTEKSAN"
     gene            9120..11546
                     /locus_tag="ACFOCA_000591"
     CDS             9120..11546
                     /locus_tag="ACFOCA_000591"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6987353.1"
                     /translation="MSAQTDPGYFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGK
                     ITPVNPRHHTIAGLPAYTSLNKIPGNADLIIAVTLPDSYDTLFKTCRKKQLRHIILIQ
                     DWDSLSAAELHTAETAIRKHHGNGLNITACTTAGIQLPSLGLNISTQDGYAAGHTAIL
                     TGNAAVSRQIDNILNKLRQGTSRHISLHPGISPITSADWLNRFGHSLHTKTAVLHHNP
                     EENQRKLFSAIRQFTRHTPLILHITCRTTETDRAVLHCLARHCNFLISFNADDLEAAL
                     RAQLSDLPPLSRLDILSDTPAEWLNAHAPKTLALHFPNLPHHIRNGHLTGTPTPSICH
                     DIASRQLARPDTQAVLTILSPSGHEDYKKTARALIRLSEQSAKPLLVSSPFSDGITHF
                     DTPTQAIRTLSYRNTAAALKQAQLDIAPPQPCRLKTPQPQNIKKALEAADPALIAEAL
                     HLPPYRHTTHNAVQFQFGSHSLYGDILTARCNGQTTAVLPPFTTLDSRHLARFAELDG
                     TQTLDQFLHTLTIIPEYRQHILGITLNLNGGQYSSDFILKTPETHDTPKRKNTGKAAQ
                     TLEHAAAKMQSAAAYLKHKNPTAAEFLRHTSEAAAELLGSKTETGAAVPNVLAPYPAA
                     YPKTLSLRNNTTVTITPILPEDAEAKQQFVRSLGPEARYTRFMTHTNELPAATLARLC
                     NPDYHCEAAWTAKDADSNIVAVVRHSRLNRNECEFGITLAEHMRGSGLAQKMMELIIQ
                     TAAQQGYRTMSADILKTNTPMIKLAEKSGFTLKESDTEKNLYRAYLNLAADKTTEKTN
                     KNLRTDHKIT"
     gene            11591..11836
                     /gene="rpsP"
                     /locus_tag="ACFOCA_000592"
     CDS             11591..11836
                     /gene="rpsP"
                     /locus_tag="ACFOCA_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFC6987354.1"
                     /translation="MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVAN
                     EKQERVRLNADRLNHWIAQGAQVSDSVAKLIKEQKAA"
     gene            11852..12361
                     /gene="rimM"
                     /locus_tag="ACFOCA_000593"
     CDS             11852..12361
                     /gene="rimM"
                     /locus_tag="ACFOCA_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748672.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFC6987355.1"
                     /translation="MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV
                     KDGKTVSVTLEAGKVVNSELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTEEDEYYW
                     TDLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKI
                     ITADWGLDY"
     gene            12361..13110
                     /gene="trmD"
                     /locus_tag="ACFOCA_000594"
     CDS             12361..13110
                     /gene="trmD"
                     /locus_tag="ACFOCA_000594"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFC6987356.1"
                     /translation="MLIQAVTIFPEMFDSITRYGVTGRANRQGIWQFEAVNPRKFADN
                     RLGYIDDRPFGGGPGMIMMAPPLHAAIEHAKAQSSQAAKVIYLSPQGKPLTHQKAVEL
                     AELPHLILLCGRYEGIDERLLQSSVDEEISIGDFVVSGGELPAMMLMDAVLRLVPGVL
                     GDMQSAEQDSFSSGILDCPHYTKPLEFQGMAVPEVLRSGNHGLIAEWRLEQSLRRTLE
                     RRPDLLEKRSLIPKESRILNKILQEQREIQS"
     gene            13126..13491
                     /gene="rplS"
                     /locus_tag="ACFOCA_000595"
     CDS             13126..13491
                     /gene="rplS"
                     /locus_tag="ACFOCA_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFC6987357.1"
                     /translation="MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQA
                     YEGVVIARRNRGLNSNFIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYL
                     RGLTGKAARIKEKLPARKG"
     gene            13813..14538
                     /locus_tag="ACFOCA_000596"
     CDS             13813..14538
                     /locus_tag="ACFOCA_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010361246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFC6987358.1"
                     /translation="MSIIVENLTVSYRRRPAVHHVDITFEEHSMWAVFGPNGAGKSTF
                     LKSLMGLQPIDTGSIRLDGLTRQNIAYLPQQSDIDRSQPMTVFDLAAMGLWYEIGFFR
                     GINAVQKQRVHESLERVGMRQFAGRQIAHLSNGQFQRVLFARMLVQNAKFLLLDEPFN
                     AVDARTTYELLDVLQKCHCGGHAIIAVLHDYEQVRAYFPNTLLLAREKIAAGATETIL
                     TEPYLAQANAKMQQQESPEWCAS"
     gene            14562..15437
                     /locus_tag="ACFOCA_000597"
     CDS             14562..15437
                     /locus_tag="ACFOCA_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFC6987359.1"
                     /translation="MNLYDLLLAPFAEFDFMRYALVSVFCLSLSAAPVGVFLVMRRMS
                     LIGDALSHAVLPGAAVGYMFAGLSLPAMGLGGVAAGMLMALLAGLVSRFTTLKEDANF
                     AAFYLSSLAIGVVLVSKNGSSVDLLHLLFGSVLAVDIPALQLIAAVSSLTLITLAVIY
                     RPLVLESIDPLFLKSVGGKGGLWHVLFLVLVVMNLVSGFQALGTLMSVGLMMLPAITA
                     RLWAKHMGALILLSVLTALLCGLSGLLISYHIEIPSGPAIILCCSVLYLFSVILGKEG
                     GILTKWLKNHRHHTT"
     gene            15514..16428
                     /locus_tag="ACFOCA_000598"
     CDS             15514..16428
                     /locus_tag="ACFOCA_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HFC6987360.1"
                     /translation="MKHLKLTLIAALLTTAATAAPLPVVTSFSILGDVAKQIGGERVS
                     IQSLVGANQDTHAYHMTSGDIKKIRSAKLILLNGLGLEAADIQRAVKQSKVSYAEATK
                     GIQPLKAEEEGGHHHDHDHDHEGHHHDHGEFDPHVWNDPVLMSAYAQNVAEALIKADP
                     EGKVYYQQRLGNYQMQLKKLHSDAQAAFNAVPAAKRKVLTGHDAFSYMGKRYHIEFIA
                     PQGVSSEAEPSAKQVAAIIRQIKREGIKAVFTENIKDTRMVDRIAKETGVNVSGKLYS
                     DALGNAPADTYIGMYRHNIKALTNAMKQ"
BASE COUNT         4345 a         5311 c         3662 g         3325 t
ORIGIN      
        1 ccgtactggt ttttgttaat ccaccataaa tgccatctga agccgattcg gttttcagac
       61 ggcatcatta tttgacctga cgcaaacaga aagccttccg cgtgcttaaa cacatctctt
      121 gtagtaaaat atctaaacag attcaactgg aaacggtcag gcttcttcac gccattccca
      181 tttcaaccgc cgcctgccag attcagacgg tattcctact tgaaaacaag gagcgttaca
      241 atgaaagcag cacgttttta cgacaaaggc gacatccgca tcaaagacat ccccgaaccg
      301 accgtcgccc ccggcaccgt cggcatcaat gttgcctggt gcggcatctg cggtaccgac
      361 ctgcacgaat tcatggaagg cccgattttc attccgcctt gcggtcatcc gcacccgatt
      421 tccggcgagt ccgcacccgt cacgatggga cacgagttct ccggcgtggt ctatgccgtc
      481 ggcgaaggcg tggacgacat caaagtcggt caacacgtcg tggtcgagcc ttacatcgta
      541 cacgacgacg taccgaccgg ctcgggcagc aactaccacc tctccaaaga catgaacttt
      601 atcggcttgg gcggctgcgg cggcggcctg tccgaaaaaa tcgccgtcaa acgccgttgg
      661 gtgcatccga tttccgacaa aatcccgttg gatcaagccg ctttgatcga accgctgtct
      721 gtcggacacc acgcctatgt acgcagcggc gcgaaagaag gcgacgtcgc attggtcggc
      781 ggtgcaggtc cgatcggttt gctgttggct gccgtgttga aagccaaagg catcaaagtc
      841 atcatcaccg agttgagcaa agcacgcaaa gacaaagcgc gcgaatccgg cgttgccgac
      901 tacatcctcg acccgtccga agtcgatgtt gtcgaagagg tgaaaaaact gaccaacggc
      961 gaaggcgtgg acgtggcatt cgaatgtacc agcgtgaaca aagtgttgga tactttggtc
     1021 gaagcctgca aacctgccgc caatttggtt atcgtatcca tctggagcca ccctgcaacc
     1081 gtcaacgtcc acagcgtcgt gatgaaagag ctggatgtgc gcggcacgat tgcctactgt
     1141 aacgaccacg ccgaaaccat caaactggtc gaagaaggca aaatcaacct cgaacccttc
     1201 atcacccagc gcatcaagct ggacgaactg gtttccgaag gcttcgagcg tctgatccac
     1261 aacaacgaat ccgccgttaa aattattgtg aatccaaacc tataagcaaa ttacatttgc
     1321 aacagcacaa atgccgtctg aaacgctcag acggcatttt ccaacgaaac gcaacaggcg
     1381 tattgcccga gagcagccgt ttaacctatc attccgaaca aacagaaaca aacagaagga
     1441 aaatcatggg agattccgta ctatccacca tccaacaaac catcgaccgg cgcaaatccg
     1501 ccgatccgtc cgaatcctac gtcgcacaac tcctgcacaa gggcgaggac aaaatcctaa
     1561 aaaaagtgat tgaagaggcg ggcgaagtat taatgtcatc caaagacaaa gacccgtccc
     1621 acctggttta cgaagtcgcc gacctttggt ttcacacgat gatcctgctg gcgcaccaca
     1681 acctgaaggc ggaagacgta ttggacgaac ttgcacgccg tcaggggctg tcggggctgg
     1741 tcgaaaaagc cgcccgcaca gaatcttaaa tttatattac aatctcatcc tttccacgtt
     1801 taatccgtct gggtgcttct tcagacggca acggagccgt tatggacaac tgtattttct
     1861 gcaaaatcgc cgccaaagac attctggcgc aaaccgtcta tgaagacggc gaaatggttt
     1921 gtttcaaaga catcaacccc gctgctccgg ttcatctgct gctgattccc aaagtccatt
     1981 tcgattcgtt ggcacacgcc gcgcccgaac atcagcccct tttgggaaaa atgatgctga
     2041 aagttcccga aatcgccaaa gcggcaggac tggcagacgg cttcaaaacc ctgatcaaca
     2101 ccggaaaagg cggcggacaa gaggtcttcc acctgcatat acacatcatg ggcacacccg
     2161 tataaaccgt tatttcacaa tcaaccccta atacttactt aaggatacat catgggcagt
     2221 ttttctctga cgcactggat tatcgtactg attatcgtcg ttttgatatt cggcaccaaa
     2281 aaactgcgca acgtcggcaa agacctcggc ggtgcggttc atgacttcaa acaggggctg
     2341 aacgaaggta cagacggcaa agaagcccca aaagacgatg taatcgaaca caaaaaagac
     2401 gaagacaaag cgtaatttat gtttgatttc ggtttgggcg agctggtttt tatcggcatt
     2461 atcgccctga ttgtcctcgg ccccgaacgc ctgcccgagg ccgcccgcac cgccggacgg
     2521 ctcatcggca ggctgcaacg ctttgtcggc agcgtcaaac aggaatttga cacgcaaatc
     2581 gaactggaag aactaaggaa ggcaaagcag gaatttgaag ctgccgctgc tcaggttcga
     2641 gacagcctca aagaaaccgg tacggatatg gagggtaatc tgcacgacat ttccgacggt
     2701 ctgaagcctt gggaaaaact gcccgaacag cgcacgcctg ctgatttcgg tgtcgatgaa
     2761 aacggcaatc cctttcccga tgcggcaaac accctatcag acggcatttc cgacgttatg
     2821 ccgtccgaac gttccgatac ttccgccgaa acccttgggg acagcgggca aaccggcagt
     2881 acagccgaac ccgcggaaac cgaccaagac cgcgcatggc gggaatacct gactgcttct
     2941 gccgccgcac ccgtcgtaca gaccgtcgaa gtcagctata tcgatactgc tgttgaaacg
     3001 cctgttccgc acaccacttc cctgcgcaaa caggcaataa gccgcaaacg cggtttgcgt
     3061 ccgaaacacc gcgccaaacc taaattgcgc gtccgtaaat cataaagaga gcaatccggt
     3121 gtccgaaaca caaaacgaac aacccgtcca accgcttgtc gagcatctca tcgagctgcg
     3181 ccgccgcctg atgtggacgg ttgtcggcat cttagtctgc tttttcggcc taatgccgtt
     3241 tgcccaacaa ctctatactt ttatcgccga cccgctgatg gcaaacctgc ccaaagacac
     3301 cagcatgatt gccaccgatg tcatcgcacc gtttttcgtg ccggtcaaag ttaccctgat
     3361 ggcggcattt ttaatttcgc tgccgcatac gctctaccaa atctgggcat ttgtcgcgcc
     3421 cgcactctac caaaacgaaa aacgcctgat tacgccgctc gtcctctcca gcgtcagcct
     3481 gtttttcatc ggcatggcat ttgcctactt tttggttttc cccgtcattt tcaaattcct
     3541 tgccagcgtt acccctgtcg gtgtcaatat ggcgacagac atcgacaaat acctctcctt
     3601 catcttgggg atgtttgtcg cattcggtac aacgtttgaa gtccccattg tcgttatcct
     3661 gttaaccaaa attggtgtgg taacaaccga acagctcaaa cgcgcccgcc cctatgtgat
     3721 tgtcggcgcg tttgtcattg ccgccatcat cacgccgccc gatgtgattt cacaaaccct
     3781 gcttgccatt ccgctgattc tcttatacga agcaggtatt tggttcggac gctttttcac
     3841 gccacgttca gaacaggatg gcgacataca gccgcctgca acaacctgac actatgccgt
     3901 ccgaacctcc gcctcatacc gcaacagatt aaggaatacc tttgaatacc ctctatttag
     3961 gttcaaacag cccgcgccga atggaaatcc tgacacagtt gggctatcag gtcgtcaagc
     4021 tgcctgccaa catcgacgaa acggtcagac agaacgaaga ccctgcccgt tacgttcaaa
     4081 ggatggcaga agaaaaaaac cgaaccgccc tgaccctctt ttgcgaaacc aacggcacaa
     4141 tgcccgattt ccccctgatt accgccgaca cctgcgtcgt ttcagacggc attatattag
     4201 gcaaaccccg ctcccaagcc gaagcaatcg aatttttaaa ccgattgtcc ggcaaacaac
     4261 ataccgtcct gactgctgtc tgcattcatt atcgcggcaa aacgtcaagc cgcgtccaaa
     4321 ccaaccgcgt tgttttcaag cccctgagtt cggaagaaat ttccgcctat gtgcaaagcg
     4381 gcgaaccgat ggacaaagcc ggcgcctacg ccgtacaagg cataggcggc atctttatcc
     4441 aatctatcga aggcagcttc agcggcatta tgggactgcc cgtttatgaa accgtttcga
     4501 tgttgcagga tttgggatac cgctccccct tgtccgccct taaaccgtaa agaccgccgt
     4561 gaacagacaa accgcttact tccttgcctc cttcagcctg atcgcactga taatcctgtc
     4621 cctttcttgg gaactgtgga ttgcaccgtt acgcccgggc ggctcgtggc tcgcgctcaa
     4681 agccctcccc ctctgtctgc cgctttcagg catcttgaaa aagaaaatct atacctacca
     4741 atacagctcc atgctggttc tgatttattt tgccgaagcc gtcatgcgcc tgttcgacgc
     4801 ctatccggca gaacaaattt gcgccgcgct ttccgcagta ttcagcatca tcttcttcat
     4861 atcctgcctg tcgttcgtca aacaatacaa ggaaacaaac aatgcccgct gaaacgaccg
     4921 tatccggcgc gcaccccgcc gccaaactgc cgatttacat cctgccctgc ttcctttgga
     4981 taggcatcgt cccctttacc tttgcgctca ggctgcaacc gtcgcccgac ttttaccacg
     5041 atgccgccgc cgcagccggc ctgattgtcc tgttgttcct cacggcagga aaaaagctgt
     5101 ttgatgtcaa aatcccacct atcagcttcc ttctgtttgc aatggcggcg ttttggtatc
     5161 ttcaggcacg cctgatgaac ctgatttacc ccggtatgaa cgacatcgtc tcttggattt
     5221 tcatcttgct cgccgtcagc gcgtgggcct gcaagagttt ggtcgcacac tacggacaag
     5281 aacgcatcgt taccctgctt gcctggtcgc tgcttatcgg ctccctgctt caatcctgca
     5341 tcgtcgtcat ccagtttgcc ggctgggaag acacccccat gcttcaaaac attattgttt
     5401 acagcgggca aggcgtaatc ggacacatcg gacagcgcaa caacctcgga cactacctga
     5461 tgtggggcat actcgccgcc gcctacctca acggacaacg aaaaatcccg cccgccctcg
     5521 gcgcaatctg cctgattatg cagaccgccg ttttaggttt ggtcaattcg cgcaccatct
     5581 tgacctacat agccgccatc gccctcatcc ttcccttctg gtatttccgt tcggacaaat
     5641 ccaacaggcg gacgatgatc ggcatagccg cagccgtatt ccttaccgcg ctgttccaat
     5701 tttccatgaa caccattctg gaaaccttta ccggcatccg ctacgaaact gccgtcgaac
     5761 gcgttgccaa cggcggtttc acagacttgc cgcgccaaat cgaatggaat aaagcccttg
     5821 ccgccttcca gtccgccccg atattcgggc acggctggaa cagttttgcc caacaaacct
     5881 tcctcatcaa tgccgaacag cacaacatac acgacaacct cctcagcaac ttgttcaccc
     5941 attcccacaa catcgtcctc caactccttg cagagatggg aatcagcggc acgcttctgg
     6001 ttgccgcaac cctgctgacg ggcattgccg ggctgcttaa acgccccctg acccccgcat
     6061 cgcttttcct gatctgcacg cttgccgtca gtatgtgcca cagtatgctc gaatatcctt
     6121 tgtggtatgt ctatttcctc atccctttcg gactgatgct cttcctgtcc cccgcagagg
     6181 cttcagacgg catcgccttc aaaaaagccg ccaatctcgg catactgacc gcctccgccg
     6241 ccatattcgc aggattgctg cacttggact ggacatacac ccggctggtt aacgcctttt
     6301 cccccgccac tgacgacagt gccaaaaccc tcaaccggaa aatcaacgag ttgcgctata
     6361 tttccgcaaa cagtccgatg ctgtcctttt atgccgactt ctccctcgta aacttcgccc
     6421 tgccggaata ccccgaaacc cagacttggg cggaagaagc aaccctcaaa tcactaaaat
     6481 accgccccca ctccgccacc taccgcatcg ccctctacct gatgcggcaa ggcaaagttg
     6541 cagaagcaaa acaatggatg cgggcgacac agtcctatta cccctacctg atgccccgat
     6601 acgccgacga aatccgcaaa ctgcccgtat gggcgccgct gctacccgaa ctgctcaaag
     6661 actgcaaagc cttcgccgcc gcgcccggtc atccggaagc aaaaccctgc aaatgacccg
     6721 cgccggcgga tgcggatacc gcccgaaatg taaagctcca tgcaagacat tgcaaaaaac
     6781 agcaaaccgg tagggaaata cgctatcaaa aaacattgca gccgtgttaa gataaaccgt
     6841 caaacaatct tttcacgccc cgcccgaaac agggtcgggg cataccctta cgaaaaggaa
     6901 acaccatgag ccgcgtatta ctcgtagatg acgatgccct gctaaccgaa ctgctgaccg
     6961 aatacctgag cgccgaaggt ctgaacgtcc gcagcgttcc cgacggggaa gcaggcgtac
     7021 aggaaatcct gagcgggcag tacgatgtag tcgtattgga ttccatgatg cccaaaatga
     7081 acggcttgga tgtcttgaaa aacgtacgcg cccgaagcac cgtccccatc atcatgctga
     7141 ccgccaaagg cgacgacatc gaccgaatca tcggcttgga aatgggggcg gacgactatg
     7201 tccccaaacc ctgcacacca cgcgaactct tggcacgcat caatgctatc ctgcgccgcg
     7261 cacaacacag cggcgaacag aacaacgcac ccaacagcat ctccgtcagc gatgtcgtcc
     7321 tgtaccccgc caaacgccag gcatccgtca aagacatgcc gctcgaactg accagcaccg
     7381 aattcaacct gctcgaagtc ctgatgcgcc atgccggaca ggtagtcagc aaagaaaccc
     7441 tgtccgtcga agcactcgac cgcaagctgg caaaattcga ccgcagtatc gacgtacaca
     7501 tctccagcat ccgccacaag ttgggcgatg cctctctgat tcaaaccgta cgcggcttgg
     7561 gctacctgtt tgtcaaaaac tgaagcaacg ggcaaatgaa actgttccaa cgcattttcg
     7621 ccacattttg cgcagttatc gtctgtgcaa tctttgtggc gagtttttct ttttggctgg
     7681 tgcagaacac ccttgccgaa aaccagttca accaacgccg caccatcgaa accactttga
     7741 tgggcagcat catttccgca ttccgggcac gcggggacgc gggcgcgcgc gaaatcctga
     7801 cggaatggaa agacagcccc gtctcatcgg gcgtgtacgt tatacagggc gacgagaaaa
     7861 aagatatcct gaaccggtat atcgacagct acaccatcga acgcgcccgg cttttcgccg
     7921 ccggacaccc gcattccaac ctcgtccata tcgaatacga ccgcttcggc gaagaatacc
     7981 tgttcttcac caaagactgg gacaaactcc aagcccgccg cctgcccagc cccctgttga
     8041 tccccggtct gccgctcgcc ccgatttggc acgaactcat catattgtcc ttcatcatcg
     8101 tcgtcggact gctgatggcg tacatcctcg ccggcaatat cgccaaaccc atcagaatct
     8161 taggcaacgg catggacagg gtggcaaacg gagaacttga aacccgtatc tcccaacagg
     8221 tcgacgaccg cgacgacgaa ttgtcccatc ttgccatcca attcgacaaa atggtggaaa
     8281 aactcgaaaa actcgttgcc aaagaacgcc acctgctcca tcacgtctcc catgaaatgc
     8341 gttctcccct tgcgcgtatg caggcaattg tcggactgat tcaggcgcag ccccaaaaac
     8401 aggagcaata tctcaaacgg ctggaaggcg aactgacccg catggatacg ctggccgggg
     8461 aactgttaac cctgtcccgt ctcgaaactt ccaatatggc tttggaaaaa gaaagcctga
     8521 aactcctgcc cttcctgggc aacctggtag aagacaatca aagcattgcc cagaaaaacg
     8581 gacaaacggt taccctgtct gccgacggaa aaatccccga aaacacaacc atccttgcca
     8641 acgaaagcta cctgtaccgc gccttcgaca acgtcatccg caacgccgtc aactacagtc
     8701 ccgaaggcag caccatcctg atcaacatcg gacaagacca caaacactgg ataatcgacg
     8761 ttaccgacaa cggccccggc gtggacgaaa tgcagctccc gcacatcttc accgctttct
     8821 accgtgcaga ctccagtgcg aacaaacccg gaacaggact ggggcttgca ttgacccaac
     8881 atattattga acagcactgc ggcaaaatca tcgccgaaaa catcaaaccg aacgggctgc
     8941 ggatgcgctt catcctaccc aagaaaaaaa ccggttccaa aacagaaaaa agtgcgaact
     9001 gaccataatg ccgtctgaac cggcttcaga cggcattgca caaacagtta ccccaaaaca
     9061 aacacacagc gggtgcatct ccaaaaatca cgcacatacc gtccgcaaag gaatatatca
     9121 tgtcggcaca aaccgatccc ggctacttct tcatgcccaa ccacattatc ctgataggcg
     9181 cgagcgaacg tccgtacagc ctgggcgaac gcgtactcag caacctgctg agtacgccct
     9241 ttcaaggaaa aatcaccccc gtaaacccgc gccaccacac catagccggg cttcccgcct
     9301 acaccagcct caacaaaatc cccggcaatg cagacctgat tattgccgtt accctacccg
     9361 acagttacga caccctcttc aaaacctgcc gcaaaaagca gctccgacac atcatcctca
     9421 tacaggactg ggacagcctg tctgccgcag aactgcacac cgccgaaact gccatccgca
     9481 aacaccacgg caacggactc aacatcaccg cctgcaccac cgcaggcatc caactgccct
     9541 cactcggact taacatcagt acccaagacg gatacgccgc aggccatacc gccatactga
     9601 ccggcaatgc cgccgtcagc cgccaaatcg acaacatcct gaacaaactc cgtcaaggca
     9661 catcccgcca catcagcctg catcccggca tcagccccat cacatccgcc gattggctca
     9721 accgcttcgg acacagcctg cacaccaaaa ccgccgtcct acaccacaac cctgaagaga
     9781 atcagcgcaa actgttcagc gcaatccgcc aatttacccg ccatacgccg ctgattctcc
     9841 acatcacctg ccgcacgaca gaaaccgacc gtgccgtact gcactgcctc gcccgacact
     9901 gcaacttcct catcagtttc aacgccgacg acctcgaagc cgcactgcgc gcccaactgt
     9961 ccgaccttcc acccctgtcc cgactcgaca tcctgtccga cacgcctgcc gaatggctga
    10021 acgcgcacgc gccaaaaacc ctcgccctcc actttcccaa ccttccccac cacatccgca
    10081 acggacacct gaccggcaca cccacaccct caatctgcca cgacatcgcc tcacgtcagc
    10141 ttgcccgccc cgacacccaa gccgtcctga ccatcctcag cccctccgga cacgaggatt
    10201 acaaaaaaac agcacgcgcc cttatccgcc tgtccgaaca gagcgccaaa cccctgctcg
    10261 tcagcagccc cttttcagac ggcataacac atttcgacac ccccactcag gcaatccgca
    10321 ccctttccta ccgcaacacc gccgccgccc tgaaacaggc acagctcgac attgcaccgc
    10381 cgcagccatg ccgtctgaaa acaccgcaac cccaaaacat caaaaaagcc ctcgaagccg
    10441 ccgaccccgc cctaatcgcc gaagccctgc acctcccccc ctaccggcac accacccata
    10501 acgccgtcca attccaattc ggcagccact ccctctatgg cgacatcctg accgcacgtt
    10561 gcaacggaca aaccactgcc gtactcccgc cgtttaccac gctcgacagc cgccaccttg
    10621 cccgctttgc cgaactcgac ggcacacaaa ccctcgacca gttcctgcac acactgacca
    10681 tcattcccga ataccgccaa cacattctcg gcatcaccct caacctaaac ggcggacaat
    10741 acagcagcga tttcatctta aagacacccg aaacacacga cacgcccaaa cgcaagaaca
    10801 caggcaaagc cgcccaaacc ctcgaacatg ccgccgcaaa aatgcagagt gccgccgcat
    10861 acctgaaaca caaaaacccg acagccgccg aatttctccg ccacacaagc gaagccgccg
    10921 cagaactgct cggcagcaaa accgaaaccg gagcagccgt acccaacgta cttgccccct
    10981 atcccgcagc ataccccaaa acactgtccc taagaaacaa cacgaccgtt accattaccc
    11041 ccattttgcc cgaagacgca gaagccaaac agcagttcgt ccgcagcctc ggtcccgaag
    11101 cacggtacac acgcttcatg acccacacca acgaactgcc cgcagccacg ttggcacgcc
    11161 tgtgcaaccc cgattaccac tgtgaagccg catggacggc aaaggatgcc gacagcaaca
    11221 tcgtcgccgt cgtccgccac agccgcctga accgcaacga atgcgaattc ggcatcacac
    11281 tggcggaaca tatgcgcggc agcggactgg cacagaaaat gatggaactc atcatccaaa
    11341 ccgccgcaca gcaaggctac cggactatga gtgccgacat tctcaaaacc aataccccca
    11401 tgatcaaact tgctgaaaaa tcaggattta ccctcaagga atcggacacc gaaaaaaacc
    11461 tgtaccgcgc atatctgaac cttgcggcag acaaaacaac agaaaaaaca aataaaaact
    11521 tgcgcaccga ccacaaaata acctaaaatc ggcagtttcc atatatccga ttttctcaaa
    11581 aggactcaaa atggtagtta tccgtttggc acgcggcggc tcgaaacacc gccccttcta
    11641 caacgtcatc gttactgact cacgcagccg ccgcgacggc cgcttcatcg aacgcgtagg
    11701 cttctacaac cccgtagcca acgaaaaaca agagcgcgtc cgcctcaatg cagaccgcct
    11761 gaaccactgg attgcacaag gcgcgcaagt cagcgactcc gttgcaaaac tgattaaaga
    11821 acaaaaagcc gcctaattca catttgccgc catgacagac actcaaaacc gggtagccat
    11881 gggctacatc aaaggcgtat tcggcataaa aggctggttg aaaattgccg ccaacaccga
    11941 atattccgac agccttttgg actaccccga gtggcatttg gtcaaggacg gcaaaaccgt
    12001 cagcgttacc cttgaagccg gaaaagtcgt caacagcgaa ctccaagtca aattcgaagg
    12061 cataaacgac cgcgacttgg cattctcatt gcgcggttac accatcgaaa taccccgtga
    12121 agcattcgcc ccgacagaag aagacgaata ctactggaca gacttggtcg gcatgaccgt
    12181 cgtcaacaaa gaccataccg ttttaggcaa ggtaagcaac ctgatggaaa ccggcgcaaa
    12241 cgacgtattg atgattgacg gagaacacgg gcagattctg attccgttcg tttcccaata
    12301 tatcgaaacc gtcgataccg gcagcaagat tattactgcc gactggggtt tggactactg
    12361 atgcttatcc aggcagttac cattttcccc gaaatgttcg acagcattac ccgctacggc
    12421 gtaacgggac gcgcgaacag acagggaatc tggcagtttg aagcagtcaa tccccgaaag
    12481 tttgccgaca acagattggg ctacatcgac gaccgcccgt tcggcggcgg cccgggaatg
    12541 attatgatgg ctccgccgct tcatgcagca atagaacacg ccaaagcaca atcctcccaa
    12601 gctgcaaaag tcatctacct cagcccccaa gggaaaccgc tgacacacca aaaagcggta
    12661 gaactggcag aacttccgca tctgattctg ctgtgcggac ggtatgaggg catagacgaa
    12721 aggcttctgc aaagcagcgt cgatgaagaa atcagcatcg gagacttcgt tgtttccggc
    12781 ggagagcttc ccgccatgat gctgatggat gcggtattga ggctcgtacc cggcgtattg
    12841 ggcgatatgc agtctgccga acaagattcg ttctcaagcg gcattttgga ctgcccccac
    12901 tacaccaaac ccttagaatt tcaaggcatg gctgttccgg aagtattacg ttccggcaat
    12961 catggcttga tagcggaatg gcggttggaa caatcgctgc gccgcacctt ggagcgcaga
    13021 cccgatcttt tggaaaagcg cagtttaatc ccaaaggaat cccgcatctt gaataaaatc
    13081 ctacaagagc aacgggaaat ccaatcataa tttaggaaaa aaacaatgaa cctgattcaa
    13141 cagctcgagc aagaagaaat tgcccgcctg aacaaagaaa tccccgaatt cgcaccgggc
    13201 gacaccgtag tcgtatccgt acgcgtcgtg gaaggtaccc gcagccgtct gcaagcctac
    13261 gaaggcgttg tcattgcacg ccgcaaccgt ggtctgaaca gcaacttcat cgtccgtaaa
    13321 atttccagcg gcgaaggtgt tgaacgtact ttccaactgt actctccgac cgtcgaaaaa
    13381 atcgaagtca aacgccgtgg cgacgtacgc cgtgccaaac tgtactacct gcgcggtctg
    13441 accggcaaag ctgcacgcat caaagaaaaa ctgcctgcac gcaaaggttg attcaaaccc
    13501 gttttcccca atgccgtctg aaccttctga cggcatttct tattgccgca acatccgcaa
    13561 cggaacagca ccaagaagca caccccttcc ggcacatccc gaatccccgt ccgaaccgaa
    13621 caaaatttac agaccaaacg ttatacagta tcatatcagc catataataa taaccgcttt
    13681 accgccttcc ctttcaaaac cgcaaatcat catgacacct tcccttttac tatcaggatt
    13741 gaccttccgc ctcgtccttg ccctgattgc cgtatccctt ttatggggcg tttacttttg
    13801 ggcagtatcc gcatgagcat cattgtcgaa aacctgaccg tcagctaccg ccgccgacct
    13861 gccgtgcacc atgtggacat tacttttgaa gaacatagta tgtgggcggt tttcggtccc
    13921 aacggcgcag ggaaatccac ctttctcaaa tccttaatgg gattacagcc tatcgatacg
    13981 ggcagcatcc ggctggacgg attgacccgt cagaacattg cctaccttcc ccagcagtcc
    14041 gacatcgacc gctcgcagcc catgaccgtt ttcgacttgg cggcaatggg gctatggtat
    14101 gaaatcggtt ttttcagagg aataaatgcc gttcaaaaac aacgcgttca cgaatctttg
    14161 gaacgcgtcg ggatgcggca gtttgccggc cgccaaatcg cccacctctc aaacggacaa
    14221 ttccagcgtg tcctttttgc ccgaatgctg gttcaaaacg ccaaattcct acttctagac
    14281 gaacctttca acgctgttga tgcacggacg acctacgaac ttctcgacgt attgcagaaa
    14341 tgccattgcg gcggacacgc catcatcgcc gtactgcacg attacgaaca agtccgtgcc
    14401 tactttccca ataccctgct gctcgcccgc gaaaaaattg cggcaggcgc aaccgagacc
    14461 attctgacag aaccctacct cgcccaagcc aacgccaaaa tgcagcaaca ggaaagcccc
    14521 gagtggtgcg cgtcataaat gccgtctgaa accgaaaaac catgaacctc tacgacctgc
    14581 tccttgcccc ctttgcagaa tttgacttta tgcgctacgc cctcgtatcc gtcttctgcc
    14641 tgtccctcag tgccgcaccc gtcggcgtat tcctcgtcat gcgccgtatg agcctgatag
    14701 gcgacgcatt gagccacgcc gtcctgcccg gtgccgccgt cggctacatg tttgccggct
    14761 taagcctgcc cgccatgggt ttgggcggcg tagccgcagg tatgctgatg gcactgcttg
    14821 ccggactcgt cagccgcttc accaccctga aagaagatgc caactttgcc gccttttatc
    14881 tcagcagcct cgccatcggt gtagtcctcg tcagcaaaaa cggcagcagc gtcgatctgc
    14941 tgcatctgct tttcggctct gtacttgccg tcgatattcc tgccctgcag ctcatcgccg
    15001 ccgtatccag cctcacgctc attacccttg ccgtcatcta ccgcccgctc gtactcgaaa
    15061 gcatcgaccc cctgtttctc aaatctgtcg gcggcaaagg cgggctttgg cacgtcctct
    15121 ttctcgtcct ggtcgtcatg aacctcgtat ccggctttca agccctcggc acactcatgt
    15181 ccgtcggact catgatgctg ccagccatta ccgcccgcct gtgggcgaag cacatgggcg
    15241 cactcatcct cctatccgtt ctgacagccc tgctgtgcgg cttgagcggg ctgctcattt
    15301 cctaccacat cgaaatccct tccggccccg ccatcatcct ctgttgcagc gtcctttatc
    15361 tcttttccgt catactcggc aaagaaggcg gcattctgac caaatggctc aaaaaccacc
    15421 gccaccacac cacctgaccc cgcaagccgc ttgaacaaac aggcggcttg ttttaccata
    15481 acagatgtta cgttatatca caggagaaca gttatgaaac acctcaaact cacccttatt
    15541 gccgcattgc tgaccactgc cgcaactgcc gccccccttc cggttgtaac cagtttcagc
    15601 attttaggcg acgttgccaa acaaatcggc ggagagcgcg tatccataca aagtttggtc
    15661 ggagccaacc aagatactca tgcctatcac atgaccagtg gcgacattaa aaaaatccgc
    15721 agtgcaaaac tcatcctgct caacggctta ggacttgaag ccgccgacat ccaacgtgcc
    15781 gtcaaacaga gcaaagtatc ctatgccgaa gcgaccaaag gcatccaacc cctcaaagcc
    15841 gaagaagaag gcggacacca tcatgaccac gaccatgacc acgaaggaca ccaccatgac
    15901 cacggcgaat ttgacccgca cgtctggaac gaccccgtcc tcatgtccgc ctatgcccaa
    15961 aacgtcgccg aagccctgat aaaggccgac cccgaaggca aagtttatta tcaacaacgc
    16021 ttgggcaact accaaatgca gctcaaaaaa ctgcacagcg acgcacaagc cgcatttaac
    16081 gccgtccctg ccgccaaacg caaagtcctg accgggcacg atgccttttc ctacatgggc
    16141 aaacgttacc atatcgaatt catcgccccg caaggtgtga gcagcgaagc cgagccttca
    16201 gccaaacaag tcgccgccat catccgacaa atcaaacgcg aaggcatcaa agccgtattc
    16261 accgaaaata tcaaagacac ccgcatggtt gaccgtatcg ccaaagaaac cggtgtcaac
    16321 gtcagcggca aactgtattc cgacgcactc ggcaacgcgc ccgcagacac ctacatcgga
    16381 atgtaccgcc acaacatcaa agccttgacc aacgcgatga agcaataaaa ccgtttgatt
    16441 ggtttgaatt tgaaaaggca aaaggccgtc tgaaaattat agtggattaa caaaaatcag
    16501 gacaaggcga cgaagccgca gacagtacag atagtacggt aaggcgaggc aacgctgtac
    16561 tggtttttgt taatccacta tattgctaga agtgcaccga ttaaggttaa ttaaaatacg
    16621 acccttatcc caatattaag aaa
//
LOCUS       DAXIFS010000023        16604 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.023, whole genome shotgun sequence.
ACCESSION   DAXIFS010000023 DAXIFS010000000
VERSION     DAXIFS010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16604
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.023"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(151..573)
                     /locus_tag="ACFOCA_000599"
     CDS             complement(151..573)
                     /locus_tag="ACFOCA_000599"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HFC6987361.1"
                     /translation="MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSL
                     VRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDQARAEEAKKAA
                     EAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK"
     gene            complement(584..1981)
                     /gene="atpD"
                     /locus_tag="ACFOCA_000600"
     CDS             complement(584..1981)
                     /gene="atpD"
                     /locus_tag="ACFOCA_000600"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFC6987362.1"
                     /translation="MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQL
                     LGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDT
                     DKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRV
                     ALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTL
                     AEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLG
                     IYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDK
                     LTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYM
                     VGSIEEAVEKAKTLN"
     gene            complement(2019..2894)
                     /gene="atpG"
                     /locus_tag="ACFOCA_000601"
     CDS             complement(2019..2894)
                     /gene="atpG"
                     /locus_tag="ACFOCA_000601"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HFC6987363.1"
                     /translation="MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARP
                     YAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLA
                     QVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQR
                     YEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALA
                     VLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAA
                     ITTELSEIVAGAAAV"
     gene            complement(2919..4466)
                     /gene="atpA"
                     /locus_tag="ACFOCA_000602"
     CDS             complement(2919..4466)
                     /gene="atpA"
                     /locus_tag="ACFOCA_000602"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFC6987364.1"
                     /translation="MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGL
                     SDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRE
                     LVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVG
                     RGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAM
                     EHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGG
                     IRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWA
                     INNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFK
                     SSYAYQA"
     gene            complement(4477..5010)
                     /locus_tag="ACFOCA_000603"
     CDS             complement(4477..5010)
                     /locus_tag="ACFOCA_000603"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFC6987365.1"
                     /translation="MAEFATIARPYAKALFGLAQEKSQIESWLGGLEKLAAVVQEGKV
                     ASLIDRPETNASEKADILIDLVGLKDKELKNFVIVLAGQKRLSILPEVYAQYQDLTLS
                     FNHIKSAVIYSAYPLTDKQVGELAQMLNKRFDSELKISVEIEPELIGGIKVEVGDQVL
                     DLSVQGKLSALYTTMTN"
     gene            complement(5015..5485)
                     /locus_tag="ACFOCA_000604"
     CDS             complement(5015..5485)
                     /locus_tag="ACFOCA_000604"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFC6987366.1"
                     /translation="MNINATLFAQIIVFFGLVWFTMKFVWPPIAKALDERAAKVAEGL
                     AAAERGKSDFEQAEKKVAELLAEGRNQVSEMVANAEKRAAKIVEEAKEQASSEAARIA
                     AQAKADVEQELFRARESLREQVAVLAVKGAESILRSEVDASKHAKLLDTLKQEL"
     gene            complement(5556..5792)
                     /gene="atpE"
                     /locus_tag="ACFOCA_000605"
     CDS             complement(5556..5792)
                     /gene="atpE"
                     /locus_tag="ACFOCA_000605"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFC6987367.1"
                     /translation="MGLIAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPL
                     QTKLFLIAGLIDAAFLIGVAIALLFAFVNPFAGA"
     gene            complement(5849..6715)
                     /gene="atpB"
                     /locus_tag="ACFOCA_000606"
     CDS             complement(5849..6715)
                     /gene="atpB"
                     /locus_tag="ACFOCA_000606"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFC6987368.1"
                     /translation="MAGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDA
                     VFFAVLLGVIGSFLLWRGAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAV
                     APLGLTLFVWIFLMNAMDMLPVDLLPMVWQGITGNHHALLRVVPTADLNTTLALAVGV
                     LLICIYYNIKIKGLGGWFHELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMY
                     AGELVFLLIALLGGAWAASGSVEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMAL
                     AFVYIGQAHDAH"
     gene            complement(6705..7058)
                     /locus_tag="ACFOCA_000607"
     CDS             complement(6705..7058)
                     /locus_tag="ACFOCA_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HFC6987369.1"
                     /translation="MKQIIILQSAVLSICAAVAFAVWGFAGFLSAVGGGLSYLLPTFV
                     AVLLLKLFRGNPFLQSRMFVFGEILKVVLSLLSMLAVFAIWHQSLVFAPFLMGLLGVS
                     HLVFLVLLRVKDYGR"
     gene            complement(7426..7764)
                     /locus_tag="ACFOCA_000608"
     CDS             complement(7426..7764)
                     /locus_tag="ACFOCA_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987370.1"
                     /translation="MNTRIIVSAAFVALALAGCGSINNVTVSDQKLQERAAFALGVSP
                     NAVKISNRNNEGIRINFTATVGKRVSQCYVTSVISTIGVTTSDAICLGGGTHKGKSQC
                     NALLKAAGRC"
     gene            complement(7899..8759)
                     /locus_tag="ACFOCA_000609"
     CDS             complement(7899..8759)
                     /locus_tag="ACFOCA_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFC6987371.1"
                     /translation="MAKVKGGLGRGLDSLLANGADNSSGDRLTTVAVKDIRPGRYQAR
                     VQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGERRWRAAQIAGLTEIPAVI
                     KTISDETALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISN
                     SLRLLSLPEPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQ
                     VALQNKRPEPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGRIILHFDTPETFDHI
                     LKQLGIDYRP"
     gene            8918..9487
                     /locus_tag="ACFOCA_000610"
     CDS             8918..9487
                     /locus_tag="ACFOCA_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFC6987372.1"
                     /translation="MVRRLIIGISGASGFQYGVKALELLRAQDIETHLVVSKGAEMAR
                     ASETAYARDEVYALADFVHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDN
                     LLTRAADVVLKERRRLVLMVRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTAD
                     DIVAHSVAHALSLFGIDTPDSAEWQGMAD"
     gene            complement(9549..10412)
                     /locus_tag="ACFOCA_000611"
     CDS             complement(9549..10412)
                     /locus_tag="ACFOCA_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6987373.1"
                     /translation="MKTFFKTLSAAALALILAACGGQKDSAPAASASAAADNGAEKKE
                     IVFGTTVGDFGDMVKEQIQAELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKP
                     YLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM
                     LDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAI
                     SSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYK
                     SPAAWNEGAAK"
     gene            complement(10571..11257)
                     /locus_tag="ACFOCA_000612"
     CDS             complement(10571..11257)
                     /locus_tag="ACFOCA_000612"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFC6987374.1"
                     /translation="MADLTFQQAVSNIIGMKGEIVRALGETFVMVGLSTTFAVVFGTL
                     LGVLLFVTSSRQLHYNKPVNFLLDNLVNLMRAFPFVILMIAMIPATRAIVGSTIGPVA
                     ASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAAMGAPPVAIVRKVLLNEARTGMVSS
                     ITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQTEVIVFIVALLVLLVILIQSTG
                     NALARKLDKR"
     gene            complement(11259..11996)
                     /locus_tag="ACFOCA_000613"
     CDS             complement(11259..11996)
                     /locus_tag="ACFOCA_000613"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFC6987375.1"
                     /translation="MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAG
                     KSTLLRLINLLERPDSGKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLNNRTVAG
                     NVAFPLEIAGWPSEKIKARVAECLEIVGLTERAGHYPAQLSGGQKQRVGIARALAPKP
                     QVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKG
                     KVVEIVEVRGNQIHARSDIGRELIRED"
     gene            12373..14220
                     /gene="ltgA"
                     /locus_tag="ACFOCA_000614"
     CDS             12373..14220
                     /gene="ltgA"
                     /locus_tag="ACFOCA_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase LtgA"
                     /protein_id="HFC6987376.1"
                     /translation="MYLPSMKHSLPLLAALVLAACSSTHAPSSKTLADNIETAGLSAS
                     VPTRPAEPERKTLADYGGYPSALDAVKQKNDAAVAAYLENAGDSAMAENVRNEWLKSL
                     GARRQWTLFAQEYAKLEPAGRAQEVECYADSSRNDYTRAAELVKNTGKLPSGCTKLLE
                     QAAASGLLDGNDAWRRVRGLLAGRQTTDARNLAAALGSPFDGGTQGSREYALLNVIGK
                     EARKSPNAAALLSEMESGLSLEQRSFAWGVLGHYQSQSLNVPAALDYYGKVADRRQLT
                     DDQIEWYARAALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNTQEAEKLY
                     KQAAATGRNFYAVLAGEELGRKIDTRNNVPDAGKNSVLRMAEDGAIKRALVLFRNSRT
                     AGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAVNSAERTDRKLNYTLR
                     YISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVMGAQSRVGAQGLMQVMPATAHEIA
                     GKIGMDAAQLYTADGNIRMGTWYMADTKRRLQNNEVLATAGYNAGPGRARRWQADTPL
                     EGAVYAETIPFSETRDYVKKVMTNAAYYAALFGAPHIPLKQRMGIVPAR"
     gene            14509..14721
                     /gene="rpsU"
                     /locus_tag="ACFOCA_000615"
     CDS             14509..14721
                     /gene="rpsU"
                     /locus_tag="ACFOCA_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFC6987377.1"
                     /translation="MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTE
                     RKRKKAAAVKRLQKRLRSQQLPPKMY"
     gene            14853..15299
                     /locus_tag="ACFOCA_000616"
     CDS             14853..15299
                     /locus_tag="ACFOCA_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFC6987378.1"
                     /translation="MSLKIRLTEDMKTAMRAKDQVSLGTIRLINAAVKQFEVDERTEA
                     DDAKITAILTKMVKQRKDSAKIYTEAGRQDLADKENAEIEVLHRYLPQMLSAGEIRTA
                     VDAAVAETGAAGMADMGKVMGVLKTRLAGKADMGEVNKILKAVLTA"
     gene            15320..15469
                     /locus_tag="ACFOCA_000617"
     CDS             15320..15469
                     /locus_tag="ACFOCA_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987379.1"
                     /translation="MPSEARIAGSDSIFNVPISNRQGQHGFDTPKRVLPINGFRLRPI
                     GQNAV"
     gene            complement(15498..15890)
                     /locus_tag="ACFOCA_000618"
     CDS             complement(15498..15890)
                     /locus_tag="ACFOCA_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HFC6987380.1"
                     /translation="MPTSTKPYVLRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDN
                     EIMLNIGATATQNLQIDNDWISFSARFSGQAHDIWIPVGHVLSLFARETSEGMGFELE
                     EYRPDTPPENTPAETAPRPAKKGLKLVK"
     gene            complement(15962..16567)
                     /locus_tag="ACFOCA_000619"
     CDS             complement(15962..16567)
                     /locus_tag="ACFOCA_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HFC6987381.1"
                     /translation="MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDVDIYNKPEDLAVM
                     NPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELF
                     NYVQVLENPAATNKEQAKAREAIGNGLTMLAPSFSKSKYILGEDFSMIDVALAPLLWR
                     LDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMRK"
BASE COUNT         3992 a         4390 c         4350 g         3872 t
ORIGIN      
        1 ctatatgttt cggttaggcg gcaggctgcc ctattgaata ccttaaagca ggctatgcct
       61 gccaacgcca tatccaaaca cagtctttaa tttaaatccg gaaaataaaa agcacgacca
      121 aacggtcgtg cttttccaaa ccaaacaagt ttatttcttg tgcgaacgga tatagtccaa
      181 agttttgagc tgtgcaatcg cagcagccaa tgctttatgt gcttccgcca aagccttatc
      241 gtctttagct tgggaaatgc ccgcttctgc ggcttttttc gcctcttccg cacgtgcctg
      301 atccatctcc gcactgcgga cggcaacatc cgccaagaca gttactttat caggctgtac
      361 ttccaaaaca ccgccggaaa cagcaaccaa aacctcttta tcctcgcccg gaacggtcaa
      421 acgcaaagcc cccggccgca ccaaactcat aatcggctcg tgtcgcgggt aaataccaag
      481 ctcaccttga acggtcggaa ccactacaaa gctggcttcg cccgaataga tgttttgctc
      541 gctactgacc acctcaactt gcatgatgct catgccgacc tcctcagttt aaggttttcg
      601 ctttctcaac cgcttcttcg atgctgccga ccatgtagaa tgcctgttcg ggcagatggt
      661 cgtattcgcc gttcaagatg gctttgaagc cggcaatggt atcgcgcagg gcgacatatt
      721 tgcccggaga acctgtaaac acttcggcaa cgtggaacgg ttgggacagg aagcgttgga
      781 ttttacgcgc acgcattacg gtcagtttgt cttcgtcaga caattcgtcc atacccaaga
      841 tggcgatgat gtcgcgcaat tctttgtatt tctgcagggt ggactgtacg ccgcgcgcca
      901 cgtcgtagtg ctcttgaccc aagaccatcg gatccagttg gcgcgaagtg gaatcaagcg
      961 gatcgactgc cgggtaaata cccaaagagg caatatcgcg gctcaatacg acggttgcgt
     1021 ccaagtgggc gaacgttgtt gccggagacg ggtcggtcaa gtcgtccgca ggtacatata
     1081 cggcttggat agaagtaata gaaccggttt gggtagaggt aatacgctcc tgcaaacgac
     1141 ccatttcttc tgccaatgtc ggttggtagc ccactgcaga cggcatacgg cccaacaatg
     1201 cggatacttc ggtaccggcc agagtgtaac ggtagatgtt gtccacgaag aacaatacgt
     1261 cgcggccttt gccgttttcg tctttttcgt cacggaagta ttccgccatg gtcaaaccgg
     1321 tcaatgcgac gcgcaaacgg ttgcccggag gttcgttcat ctgaccgtaa accattgcca
     1381 ctttatccaa tacgttggaa tctttcatct cgtggtagaa gtcgttacct tcgcgggtac
     1441 gctcacccac gcctgcgaac acggacaagc cgctgtgcgc tttggcgatg ttgttgatca
     1501 attccatcat gttcacggtt ttacccacac cggcaccgcc gaacagacct actttaccgc
     1561 ctttggcaaa cggacacagc aagtcaatca ctttaatgcc cgtttcgagc aattcggttg
     1621 tggaagacag ttcgtcaaac ttaggagcgg cttggtggat ggcacgactc ttgtcggtat
     1681 cgatcggacc tgcctcgtca acaggcgttc ccaatacatc gacaatgcgt cccaacgtac
     1741 ctttacctac cggcacagta atgggcgcac cggtattgct cacagtcatg ccgcgtttca
     1801 aaccgtccga gctgcccatc gcaatggtac ggactacgcc gtcgcccaaa agctgttgga
     1861 cttccaaagt cagaccgttt tcgtctaatt tcaaagcgtc gtaaacgcgc ggaatcatgt
     1921 cgcgtggaaa ttccacgtca acaaccgcac cgataatttg tacgattttg ccttggctca
     1981 ttatcgtatc ctaatttccg tacaggattc agacggcatc agacagccgc cgcacctgct
     2041 acaatttctg acaattccgt ggtaatcgca gcttgacgcg atttgttata taccaaacgc
     2101 aactctttga tggcattgcc tgcattgtct gttgcagctt tcatggcaac catgcgggct
     2161 gcctgttcgg atgccatatt gtcgctcaac gcctgataaa ccacagactc taaatagcgg
     2221 cgaaccagat attccaacac tgcaagtgca gtcggttcgt agcggtattc ccagctgaac
     2281 ggtgatttgg gagctgaatc gccaatcacg ttctcaccga taggcagcaa tacttccatt
     2341 ctcggttcct gacgcatggt attgacaaaa cccgaataca ccagatggat tctgtcaatt
     2401 tcatgtttct cataccgttg gaagagttct gtcaaaggtc cgagcagcat ttccattttt
     2461 ggggtatcgc ccaaatttac ggcactggca accacattca gaccaatgct ctgacacgcc
     2521 atcagacctt tactgccaag gcatacgatt tcctcttcaa taccttgatt ccgatactct
     2581 tgaacttgtg ccaaaaactt tttcagcacg ttggcgttca aaccgccaca caaaccctta
     2641 tcagacgtaa tcaaaataaa accgacacgt ctgatttccc gatgagattc cagcaacgga
     2701 ataccatgat cggtattggt ttgcgcaaga tggctcatca ccatacgcac tttttcggca
     2761 tacggacgcg ccaaacgcat ccgttcctga gtcttccgca ttttagaggt tgacaccatc
     2821 tgcatcgctt tagtgatctt ttgggtattc tgaacactgc ggattttggt gagaatctct
     2881 tttcctactg ccatttcaga ctcctttcac ttcaagcctt atgcctgata ggcgtaagaa
     2941 gatttgaagg atttcatggc tgcttcaagc gttttctcgc tctcgtcgga cattgcacct
     3001 gaagcattga cggcttccaa aacttccgga tgttgggtac ggacaaagct caaaaattca
     3061 gattcaaaag ccagagcttt ggcaaccgga acatcagaat acgaaccgtt gttgattgcc
     3121 caaagggtca aagccatttc agccgtattc aacgtactga actgtttctg tttcatcagt
     3181 tcggttacga cttcgccatg ctccaattgt ttgcgcgtag cttcatccaa atcggatgca
     3241 aattgcgaga acgccgccaa ttcacgatat tgcgccaacg ccaaacggat accgccaccc
     3301 agctttttaa tcactttggt ttgtgcagca ccgcctacgc gggatacgga aataccggca
     3361 ttgattgcag gacggatacc ggcgttgaag aggtcggttt ccaagaaaat ctgaccgtcg
     3421 gtaatcgaaa tgacgttagt cggaacgaaa gcagatacgt cgcccgcttg ggtttcgata
     3481 atcggcaaag cagtcagaga accggttttg ccttttactt cgccgttggt caatttctcc
     3541 acttcgtgtt cattgacacg tgctgcacgt tccaacagac gggagtgcag gtagaacaca
     3601 tcgccgggat aggcttcgcg gccgggcgga cggcgcaaaa gcagggaaat ttgacggtaa
     3661 gccacagcct gtttggacaa atcgtcataa acaatcaagg catcttcgcc gcggtcgcgg
     3721 aagaattcac ccatcgtaca accggagtaa ggtgcgatat attgcaatgc cgccgcttca
     3781 gatgcagttg cagcaaccac aatcgtgtgt tccatcgcgc catgctcttc caatttgcgg
     3841 accacgttgg caatagaaga tgctttttga ccgatagcga cataaataca gataacgccc
     3901 gtaccttttt ggttgacgat ggcatccaat gctacggccg ttttaccggt ttgacggtcg
     3961 ccaataatca actcacgctg accgcgaccg acaggaacca tagagtcaat cgccttcaga
     4021 ccggtttgca tcggctggtc aaccgatttg cgcgcaatca cgcccggtgc gattttttcg
     4081 ataggggcgg tcaaagttgt attaatcggg cctttgccgt caatcggacg acccaatgca
     4141 tcaacgacgc gtccgaccag ttcgcgtccg accggcactt ccaagatacg accggtacaa
     4201 gtaaccgtgt cgccttcttt aatatgttcg tactcgccca acactacggc gccgacggag
     4261 tcgcgctcca ggttcatcgc caagccgaaa gtgttacccg ggaattcgag catctcacct
     4321 tgcattgcat ctgacaaacc atggatgcga acgataccgt cagttaccga aatcaccgta
     4381 ccacgggtac gcacttcggc atttacagac agattttcga tcttggcttt aatcaaatcg
     4441 ctaatttcag caggattaag ctgcatgaaa actctcctaa ttcgtcatag tcgtgtacaa
     4501 ggcactcaat ttgccttgta cagacaaatc caaaacctga tcacccactt caacttttat
     4561 gccgccaatc agctccggtt cgatttcgac agagattttc agctcgctgt cgaaacgctt
     4621 attcagcatt tgcgccaact cgccgacctg tttgtcggtc aacggatagg cactgtaaat
     4681 gacggcagat ttgatatggt tgaatgataa ggtcaagtct tgatattgag catatacttc
     4741 cggcaatatc gacaaacgtt tctgcccggc caagacgata acaaagtttt tcaactcctt
     4801 gtctttcaaa ccgaccaaat cgatgaggat atctgctttt tctgaagcat tcgtttcagg
     4861 acggtcaatc aatgaagcca ccttcccttc ctgaacaacc gccgcaagtt tttccagtcc
     4921 gcccaaccaa gactcaattt ggcttttttc ctgagccaga ccgaacaatg cctttgcata
     4981 aggtctggca atcgttgcga actctgccat aagattacag ctcctgtttc agggtatcga
     5041 gcagttttgc gtgtttggaa gcatcgactt cgctgcgcaa aatagattcg gcacctttga
     5101 cagccaacac ggcaacctgc tcgcgcaggg attcgcgtgc gcggaacaat tcctgctcca
     5161 catcggcctt tgcctgagct gcaatgcgcg ccgcctcgga agaagcctgt tctttggctt
     5221 cttcgacaat tttggcggca cgtttttcgg cgttggcaac catttcggaa acctgattac
     5281 gcccttctgc caagagttct gcaacctttt tttcagcctg ctcgaaatcg cttttaccac
     5341 gctcggcggc agccaagcct tcggcgactt ttgcggcacg ctcatccaaa gcttttgcaa
     5401 tcggcggcca cacgaatttc atggtaaacc ataccaaacc gaaaaagacg atgatttgag
     5461 cgaataatgt tgcattgata ttcacgttac ttaaccttcg tactggggtt aatcaaacag
     5521 gctgcgcctg tacggaacgg acgaatccgt cctgattatg cacctgcaaa cgggttaacg
     5581 aaggcgaaca gcagtgcaat ggcgacacca atcaagaatg cggcatcaat caaaccggca
     5641 atcaggaaca gtttggtttg cagcggaccg atcagttcgg gctgacgggc agaagactcc
     5701 aaatatttag aaccgaccat tgcgataccg atagaggcac ccaatgcacc caatgcaacg
     5761 atcaaaccac atgcgatagc aatcaaaccc attttaaact ccttaaagaa acaaaggtta
     5821 aactacaaaa acaaactact taggaaaatc agtgcgcatc atgtgcctgt ccgatataga
     5881 cgaacgccaa cgccatgaaa ataaacgcct gcagggtaat caccaaaata tggaaaatcg
     5941 cccatgccaa accggcaata atgtggaata caaacagaat cggatccatg acttcgacgc
     6001 tgccggaagc cgcccaagca ccgccaagca aggctatcaa caagaatacc aattcgcccg
     6061 catacatatt gccgaacaac cgcataccgt gggatacggt tttagaaaga aactcgacca
     6121 aattcaacag aaagttcgca ggtgcgagtt ttgcaccgaa cggcgcgctg aacaactcgt
     6181 gaaaccagcc acccaatcct ttgattttga tgttgtaata gatacaaatc agcaacacgc
     6241 cgacagcgag tgccaaagtg gtgttcaaat cggcagtcgg tacgacacgc agcagggcgt
     6301 gatggttgcc ggtaatgccc tgccatacca tcggcagcaa atcgaccggc agcatatcca
     6361 tcgcgttcat cagaaaaatc cagacaaaca gcgtcagacc caacggcgcg acggcttttc
     6421 tagacttttc gttgtgaatg atgctcttac acatatcgtc cacaaactca aacaagattt
     6481 ccactgcggc ctggaaacgt ccgggaacgc ctgccgtcgc tttttttgca ccgcgccaca
     6541 acagaaagct gccgattacg cccaacagga cggcaaaaaa gacggcatca aggttaataa
     6601 acgaaaaatc agcaatgttt ttcagtccct gaccctgagt aacatccgac aaactggtca
     6661 agctctgcaa gtggtgcttg atgtagtcgg cagcggtaat ggtttcacct gccataatct
     6721 ttcactctca acaatactaa aaaaaccaaa tggctgacac cgagcagccc catcagaaac
     6781 ggggcgaaca ccagcgattg atgccatatt gcaaatacgg caagcatgga caacagcgac
     6841 agcactactt ttaaaatctc tccgaagacg aacatcctgc tttgcaggaa ggggtttccc
     6901 ctgaaaagtt ttaaaagtaa aactgcaaca aacgtgggaa gcaggtagga caaaccgcca
     6961 ccgaccgccg aaaggaatcc ggcaaaaccc catacagcaa aggcaactgc ggcgcatatg
     7021 gacaatacgg cggattgtag gatgataatc tgcttcataa agggaatgtt tccgcctcgg
     7081 atttggggcg cggctaatat aatttagaag ccttattacg tcaagcgaca gttaatcttt
     7141 gtgaaacaac gtatcccaat ccgccgcgct cgccgcctga ataacggcga caggtgtcat
     7201 tctaacacac attacatata attacaggat attaaggagt ttgtccgcaa tttctttaca
     7261 tttttaatgt tcttacgtga tttgtttgct ttacgtggaa ataataaaaa atcaacgcga
     7321 aattgtagca gtttatcggt cggattgtcg gcagtttggg gaatttgctc aataaataaa
     7381 aggtcgtctg aaaatatttt cagacgacct tttccgaata aaggattagc aacggcctgc
     7441 cgctttaagc aaagcattgc attgactttt gcctttgtgc gttccgcctc ccaaacaaat
     7501 tgcatcggaa gtggtaacgc cgattgtgct gattacactg gtaacatagc attggctcac
     7561 gcgcttaccc acagttgcgg taaagttgat gcgtatgcct tcattgttgc ggttgctgat
     7621 ttttacggca tttgggctga cgcccaaggc aaacgcggca cgttcctgaa gtttctggtc
     7681 ggaaacggtt acattattga ttgagccgca acctgctaat gccaacgcaa cgaacgcagc
     7741 cgaaacgatg atgcgtgtgt tcataatttc ctcgaaaatt aaaaatgaaa acaggaaaac
     7801 gattcttacg tgaagcagaa aaatgtcaat agaattatat ttcccactta aaatctggaa
     7861 agctgttctc tatatttcag acggtatatc ccgcaaaatt aaggtcggta atctatgccc
     7921 aactgcttca agatatggtc gaaggtttcg ggcgtgtcga aatgcaggat gattctgcct
     7981 tttttatgat tggcggtttt gatttcggcg ttgacaccca gtttttcagt cagcaaatca
     8041 ttcaggcggc cgatgtcggc ggcggcagtc tttttgggct cgggacgttt gttttgaagg
     8101 gcgacctggc tgcggcgttc gacttcgcgc accgaccagc cgtttttgac ggccttttgc
     8161 gccaattcga gctgttcgac gacgggcagg gtcagcaatg cgcgggcgtg ccccatttcg
     8221 aggcggcgtt ggtaaagcat ttcctgcacg ggttcgggca ggcttaaaag gcgcaggctg
     8281 ttggaaatcg cgcttcggct tttaccgacg gcttgggcga tggtttcgtg ggtcagcccg
     8341 aactcgtcgg caaggcgttt caagccttgt gcttcttcga tggggttgag gttttcgcgc
     8401 tggaggtttt cgatcaaacc cattgccaac gcggtttcgt cgctgatggt tttgataacg
     8461 gcggggattt cggtcaggcc ggcaatctgt gcggcacgcc aacgccgctc ccccgcaatc
     8521 agttcgtatc gggacagtcc gtgttcgcgc acgatgacgg gctgtatcac gccttgcgcc
     8581 ttaatcgaat ccgccagctc ctgcaaggct tcgtcatcga tttgaacacg cgcctgatag
     8641 cggccgggcc ggatatcttt aaccgcaacc gtggtcaatc ggtcgccgct gctgttgtct
     8701 gcgccgttgg cgagcagcga atccaaaccg cgccccaatc cgccttttac ttttgccata
     8761 ccgccctccc gtgcctattt cagataggat gttaaatcgg atattttatc ggatattggg
     8821 tgttgccgac aatttgtatc cgtgtttatc ggatttctgt tttttcacta taatagccga
     8881 tttgccgttg caggcggttt tatgggaaag gcggatgatg gtacggcgtt tgataatcgg
     8941 catcagtggg gcgagcggtt tccaatacgg cgtgaaggct ttggaacttt tacgcgcgca
     9001 agatatcgaa acgcaccttg tggtatcgaa aggtgcggag atggcgcgcg cttcggaaac
     9061 ggcttatgcg agagatgagg tatatgcctt ggcggacttc gtgcatccga tcggcaatat
     9121 cggggcgtgc attgccagcg gtacgtttaa aacggacggg atgctggtcg ccccctgttc
     9181 gatgcggacg cttgcctcgg tcgcgcacgg cttcggcgac aacctcttga cgcgtgcggc
     9241 ggatgtggtt ttgaaggaaa ggcggcggct ggtgctgatg gtgcgcgaaa cgccgctgaa
     9301 ccttgcccat ttggacaata tgaagcgggt aacggaaatg ggcggcgtgg tgtttccccc
     9361 tgttcctgcg atgtaccgca aaccgcagac ggcggacgac atagtggcgc acagtgttgc
     9421 acacgctttg tcgctgttcg gaatcgatac gccggattcg gcggaatggc agggaatggc
     9481 ggattaaagg acaaaaatgc cgtctgaaca cggatacggt tcagacggca tcattttata
     9541 cgactgcctt atttggctgc gccttcattc catgcggcag gggatttgta gccctcgaag
     9601 cgtttgtgcg cgtaggcttt gaacgcgtcg gagttatagg cctcggttac gtctttaagc
     9661 cattggctgt ctttgtcggc ggttttgacg gcagaccagt tgacataggc aaagctcggt
     9721 tcttggaaca gggcttcggt cagcttcatg ccgctgctta tggcgtagtt gccgttgacg
     9781 acggcaaaat ccacgtcggc gcggctacgc ggcagttgcg cggcttcaag ctcgacgatt
     9841 ttgatgtttt tcaggttctc ggcgatgtcc gctttggatg cggtcagcgg attgatgccg
     9901 tctttgagtt tgatccaacc cagttcgtcg agcatcacca agacgcgggc gaagttggac
     9961 gggtcgttgg gcgcggatac ggtgctgccg tctttgactt cttccagcga tttcagcttg
    10021 cccgggtaca gtcccaaagg cgcggtcggc acttggaaga cttcggtgat gtccagattg
    10081 tgttcttttt tgaagtcgtc aagatagggt ttgtgttgga agacgttgat gtccaactcg
    10141 ccctcagcca atgccagatt cgggcgtaca tagtcggtaa actcgaccag tttgacggtg
    10201 tagccttttt tctccagctc ggcttggatt tgttctttga ccatatcgcc gaagtcgccg
    10261 acggtcgtgc cgaagacgat ttcttttttc tccgcgccgt tgtcggcggc ggcagaagcg
    10321 gatgcggcgg gcgcgctgtc tttttgaccg ccgcaggcgg cgaggatgag cgcgagtgcg
    10381 gcggcggaaa gggttttgaa gaaggttttc atattttctc ctgatgttgt ggcagtttca
    10441 aacaaaaatg acgggcaggg agtcctgccg tccggattcg gcgttcagac ggcatttgcc
    10501 gcgaacaggg ggattttata gcatttttcg gatagcggtg ggggttttgg cgttcagacg
    10561 gcattcgggt ttaacgtttg tcgagtttcc gcgccaacgc gttgccggtg ctttgaatca
    10621 ggatgaccag cagcacgagg agggcgacga tgaagacgat gacttcggtt tggtagcggt
    10681 agtagccgta gcggatggcg aggtcgccca agccgccgcc gcctatcatc cctgccgccg
    10741 cgctgtatga caaaagcccg atggcaagca cggtaatgct ggaaaccatg cccgtgcgcg
    10801 cttcgtttaa gaggactttg cggacgatgg caaccggcgg cgcacccatc gcggcggcgg
    10861 cttcaatcac gcctttgggg acttcgcgca ggttttgttc caccagtcgg gcgaagtaaa
    10921 acagaccgga cacgctcaat accagcgagg cggcaactgg accgatggtg ctgccgacaa
    10981 tggcgcgtgt ggcgggtatc atcgcaatca tcaaaatgac gaaggggaag gcgcgcatga
    11041 ggttgacgag gttgtcgagc aggaaattta ccggcttgtt gtaatgcagt tggcggctgg
    11101 aggttacgaa gagcaacacg cccagcaacg tgccgaaaac gacggcgaat gtggtggaca
    11161 aaccgaccat tacgaaggtt tcgcccaatg cgcggacgat ttcgcctttc ataccgatga
    11221 tgttggaaac ggcttgttgg aaggtcaggt ctgccatttc agtcctctct gatgagttcg
    11281 cgcccgatgt cggatcgggc gtggatttgg ttgccgcgta cttcgacgat ttcgacgact
    11341 ttgcctttat ccaacagggc ggcgcggtcg cacagtcgtc tgataacgct catttcgtgg
    11401 gttacgatga cgatggttac gttgaatcgt ttgttgatgt cttccaaaca ttccaagacg
    11461 ctgcgcgtgg tggcggggtc gagggcggaa gtgggttcgt cggcgaggat gacttggggt
    11521 ttgggcgcga gtgcgcgggc gatgccgaca cgctgtttct gcccgcctga aagctgggcg
    11581 ggatagtggc cggcgcgttc ggtcagtccg acgatttcga gacattcggc aacgcgcgct
    11641 ttgatttttt cagacggcca tccggcgatt tccaatggga aggcgacgtt gccggcgacg
    11701 gtgcggttgt tcaacaggtt gaactgctga aacaccatgc cgatattctg ccgagcctga
    11761 cgcaatgcgg cggcatcgag cgcggtcagc tcttgtccgc agacgttgac cttgccgctg
    11821 tcgggacgtt ccaacaggtt aatcaggcgc aacagggtgg atttgcctgc acccgaataa
    11881 cccatcagcc cgaagatttc accgtcgcgg atttcgaggc tggtcggctc gacggcggca
    11941 aaacgggtct tgtcgcgcgt ttggtaatgc ttggaaacct tgtccaaaat aatcattgtc
    12001 tttcccatac aacaaagccc gatgtcggac acaacgggcg cggaagataa agctgaaatt
    12061 gtcggaacgc tttagctgtt atgcccgcaa gctgtgtcaa atcggcaggt taattttcgt
    12121 aggatattat cgggaaagcg tttttttgtc aataaggcag gaagcgggca accatttcgg
    12181 acaatgccgt ctgaaacagg caaaggcagc agttcgcacc aaaacggcaa atgattgaaa
    12241 aatataaatt atgtcagaaa cattccaaag ccggtgcagt ttcggcatat aattcatgca
    12301 aacgcctgtt cagacggcat tttgtctttt ccaaccctga ccgttcaggg ttccgattct
    12361 taaggaaatc cgatgtacct accctctatg aagcattccc tgccgctgct ggcggccctg
    12421 gtgcttgccg cgtgttcttc gacacacgcg cccagcagca agaccctggc agacaatata
    12481 gaaactgccg gtctttcggc aagcgttccc acccgccctg ccgaacccga aagaaaaacg
    12541 ctggcagatt acggcggcta cccgtccgca ctggatgcag tgaaacagaa aaacgatgcc
    12601 gccgtcgccg cctatttgga aaacgccggc gacagtgcga tggcggaaaa tgtccgcaac
    12661 gagtggctga agtctttggg cgcacgcaga cagtggacgc tgtttgcaca ggaatacgcc
    12721 aaactcgaac cggcagggcg cgcccaagaa gtcgaatgct acgccgattc gagccgcaac
    12781 gactatacgc gtgccgctga actggttaaa aatacgggca aactgccttc gggctgcacc
    12841 aaactgttgg aacaggcagc cgcatccggc ttgttggacg gcaacgacgc ctggaggcgc
    12901 gtgcgcggac tgctggccgg ccgccaaacc acagacgcac gcaaccttgc cgccgcattg
    12961 ggcagcccgt ttgacggcgg tacacaaggt tcgcgcgaat atgccctgtt gaacgtcatc
    13021 ggcaaagagg cgcgtaaatc gccgaatgcc gccgccctgc tgtccgaaat ggaaagcggt
    13081 ttaagcctcg aacaacgcag tttcgcgtgg ggcgtattgg ggcattatca gtcgcaaagc
    13141 ctcaatgtgc ctgccgcctt ggactattac ggcaaggttg ccgaccgccg ccaactgacc
    13201 gacgaccaaa tcgagtggta cgcccgcgcc gccttgcgcg cccgacgttg ggacgagctg
    13261 gcctccgtta tctcgcatat gcccgaaaaa ctgcaaaaaa gcccgacctg gctctactgg
    13321 ctggcacgca gtcgcgccgc aacgggcaac acgcaagagg cggaaaaact ttacaaacag
    13381 gcagcagcga cgggcaggaa tttttatgcg gtgctggcgg gggaagagtt ggggcgcaaa
    13441 atcgatacgc gcaacaatgt gcccgatgcc ggcaaaaaca gcgtcctccg tatggcggaa
    13501 gacggcgcga ttaagcgcgc gctggtgctg ttccgaaaca gccgaaccgc cggcgatgcg
    13561 aaaatgcgcc gtcaggctca ggcggaatgg cgttttgcca cacgcggctt tgacgaagac
    13621 aagctgctga ccgccgcgca aaccgcgttc gaccacggtt tttacgatat ggcggtcaac
    13681 agcgcggaac gtaccgaccg caaactcaac tacacattgc gctatatttc gccgtttaaa
    13741 gacacggtaa tccgccacgc gcaaaatgtt aatgtcgatc cggcgtgggt ttacgggctg
    13801 attcgtcagg aaagccgctt cgttatgggc gcgcaatccc gcgtaggcgc gcaggggctg
    13861 atgcaggtta tgcctgccac cgcgcacgaa atcgccggca aaatcggtat ggatgccgca
    13921 caactttaca ccgccgacgg caatatccgt atggggacgt ggtatatggc ggacaccaaa
    13981 cgccgcctgc aaaacaacga agtcctcgcc accgcaggct ataacgccgg tcccggcagg
    14041 gcgcgccgat ggcaggcgga cacgcccctc gaaggcgcgg tatatgccga aaccatcccg
    14101 ttttccgaaa cgcgcgacta tgtcaaaaaa gtgatgacca acgccgccta ctacgccgcc
    14161 ctcttcggcg cgccgcacat cccgctcaaa cagcgtatgg gcattgttcc tgcacgctga
    14221 cgtaccgatg ccgtctgaaa cccgcccggt ctttcagacg gcatttttat cccgaacggc
    14281 attgacggcg aaccataaat ataagacaat ccgaaaattg tttttcctgc tttttcaagc
    14341 agcttgacac ggcacaagcc gacccgttag gaggtgatgt ttccgtcacg gcgcgtatcc
    14401 cgccgccgca aggcacagcg atacggtaaa ccttcaacac cgtctgccct accctttcca
    14461 ccgatatgat gggcagatga aacaaccgaa tttattaaag gaaataaaat gcctgcaatc
    14521 cgcgtaaaag agaatgaacc ctttgaagtc gctatgcgcc gtttcaaacg cgccgtagaa
    14581 aaaaccggcc tgctgaccga gctgcgcgcc cgcgaagcct acgaaaaacc gactaccgaa
    14641 cgcaaacgca aaaaagcggc agccgtaaaa cgcctgcaaa aacgcctgcg cagccaacaa
    14701 ctgccgccca aaatgtacta aacgttcaag tacagattac aggtcagccc tgtgatatga
    14761 ggacacaccg caagacctgc tctgcggtgt gttttgcttt tcagacggca tcgaaacccg
    14821 ccgtttccat ccgacatccc agcgaggaca ttatgagcct gaaaatccgc cttaccgaag
    14881 acatgaaaac cgcgatgcgc gccaaagacc aagtttccct cggcaccatc cgcctcatca
    14941 acgccgccgt caaacagttt gaagtggacg aacgcaccga agccgacgat gccaaaatca
    15001 ccgccatcct gaccaaaatg gtcaaacagc gaaaagacag cgcgaaaatc tacactgaag
    15061 ccggccgtca ggatttggca gacaaagaaa acgccgaaat cgaggtactg caccgctacc
    15121 ttccccaaat gctctccgcc ggggaaatcc gtactgcggt cgatgccgcc gttgccgaaa
    15181 ccggcgcggc aggtatggcg gatatgggca aagtgatggg cgtattgaaa acccgacttg
    15241 ccggcaaagc cgatatgggc gaagtcaaca aaatcctgaa agccgtgctg accgcctgat
    15301 tgcccgaata tcggacaaaa tgccgtctga agcccgtatc gcaggttcag acagcatttt
    15361 caatgtccca atatcgaatc ggcaggggca acacggtttc gatacaccga aacgggtttt
    15421 gccgataaac ggattccgtt tgcgccccat cggacaaaat gccgtctgaa acacgattcc
    15481 gttcagacgg catagattta tttgaccaat ttcaagcctt ttttggcggg tcggggcgcg
    15541 gtttcggcag gggtgttttc aggcggcgta tcggggcggt actcctccaa ttcaaacccc
    15601 ataccttcgc tggtctcccg tgcgaaaagg ctgaggacgt gtccgacagg tatccatata
    15661 tcgtgcgcct gtccgctgaa acgggcggaa aagctgatcc aatcgttgtc gatttgaagg
    15721 ttttgcgtgg cggttgcgcc gatattgagc ataatttcgt tgtcgcggac gtactgcatg
    15781 gggacgcgcg tgtgttcgtt gacccaaaca aggatgtgcg gtgtgaggct gttgtcgctg
    15841 caccattcgc agagagcgcg gaggacgtag ggtttggtgg aagtgggcat aatgggttcc
    15901 gtgttgtacg ccaaaatagg aaaatgcctg caaaacggtg ggttttgcaa gcatttcgga
    15961 cttatttgcg catggctttt tcggcgggtg tcagtgcttc gataaaggct tcgcgctgga
    16021 agatgcgctc ggcgtatttg agcagcggcg cggcactttt gcccagtttg acatcgtagt
    16081 ggtcgagccg ccacagcagc ggagcaaggg cgacatcaat catagaaaaa tcttcgccga
    16141 ggatgtattt gcttttgctg aacgaagggg cgagcatcgt caggccgttg ccgatggctt
    16201 cgcgcgcttt tgcctgttcc ttgttggtgg cggcggggtt ttccaaaact tggacgtagt
    16261 tgaacaattc tttttccata cggtacagca ccagccggcc cctgccgcgc ataacgggat
    16321 caccgggcat aagctgcgga tgggggaagc gttcgtcgat gtattcgttg atgatgttgg
    16381 actcgtgcag caccaaatcg cgctcgacca gtacggggac ctggttgtac gggttcatga
    16441 cggcgaggtc ttcgggtttg ttgtaaatat cgacgtcttt gatttcaaaa tccatacctt
    16501 tttcgtacaa aacgaagcgg cagcggtggc tgaaggggca ggtaatgccg gaatagaggg
    16561 tcatcataat aattgtcgct cctgtgtgat gcctacaaaa cggc
//
LOCUS       DAXIFS010000024        16545 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.024, whole genome shotgun sequence.
ACCESSION   DAXIFS010000024 DAXIFS010000000
VERSION     DAXIFS010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16545
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.024"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(227..1528)
                     /locus_tag="ACFOCA_000620"
     CDS             complement(227..1528)
                     /locus_tag="ACFOCA_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding domain-containing protein"
                     /protein_id="HFC6987382.1"
                     /translation="MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCTAVAEGLPV
                     IGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAV
                     IADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYRE
                     VWLDRFSKQPPAGPNLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRF
                     LEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFF
                     LQLALQHTDDGPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSA
                     DFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGT
                     FIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP"
     gene            complement(1518..2429)
                     /locus_tag="ACFOCA_000621"
     CDS             complement(1518..2429)
                     /locus_tag="ACFOCA_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6987383.1"
                     /translation="MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTV
                     QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
                     AGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
                     IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
                     IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGSLVRLLPEYTVPTDRLNAVYADRA
                     FLSAKVRSFIDFLNEKIASRKGCRNAV"
     gene            2537..2935
                     /locus_tag="ACFOCA_000622"
     CDS             2537..2935
                     /locus_tag="ACFOCA_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6987384.1"
                     /translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
                     GGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
                     AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
     gene            2984..3589
                     /locus_tag="ACFOCA_000623"
     CDS             2984..3589
                     /locus_tag="ACFOCA_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6987385.1"
                     /translation="MTRQSLQQAAESRRSIYSLNKNLPVGKDEIVQIVEHAVLHTPSS
                     FNSQSARVVVLFGEEHDKVWQFVEDALCAVVPADSFEPTAQKLNLFKAGAATILFYED
                     QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
                     KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
     gene            3775..5886
                     /locus_tag="ACFOCA_000624"
     CDS             3775..5886
                     /locus_tag="ACFOCA_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6987386.1"
                     /translation="MKISFHLALLPTLIIASFPVAAADTQDNGEHYTATLPTVSVVGQ
                     SDTSVLKGYINYDEAAVTRNGQLIKETPQTIDTLNIQKNKNYGTNDLSSILEGNAGID
                     AAYDMRGESIFLRGFQADASDIYRDGVRESGQVRRSTANIERVEILKGPSSVLYGRTN
                     GGGVINMVSKYANFKQSRNIGAVYGSWANRSLNMDINEVLNKNVAIRLTGEVGRANSF
                     RSGIDSKNVMVSPSITVKLDNGLKWTGQYTYDNVERTPDRSPTKSVYDRFGLPYRMGF
                     AHRNDFVKDKLQVWRSDLEYAFNDKWRAQWQLAHRTAAQDFDHFYAGSENGNLIKRNY
                     AWQQTDNKTLSSNFTLNGDYTIGRFENHLTVGMDYSREHRNPTLGYSRAFTASIDPYD
                     RASWPASGRLQPILTQNRHKADSYGIFVQNIFSATPDLKFVLGGRYDKYTFNSENKLT
                     GSSRQYSGHSFSPNIGAVWNINPVHTLYASYNKGFAPYGGRGGYLSINTSSSAVFNAD
                     PEYTRQYETGVKSSWLDDRLSTTLSAYQIERFNIRYRPDEQNDPYTWAVGGKHRSRGV
                     ELSAIGQIIPKKLYLRGSLGVMQAKVVEDKENPDRVGIHLNNTSNVTGNLFFRYTPTE
                     NLYGEIGVTGTGKRYGYNSRNKEVTTLPGFARVDAMLGWNHKNVNITFAAANLLNQKY
                     WRSDAMPGAPRTYTARVNYSF"
     gene            6089..6748
                     /locus_tag="ACFOCA_000625"
     CDS             6089..6748
                     /locus_tag="ACFOCA_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFC6987387.1"
                     /translation="MKTAILIDGAFFIKRVRSLGLSQNPHDAKRIADLAFRYSMLHLK
                     DKINGTDQMDDLYRIFFYDCVPFEKKMHNPVSHRAIDFSKTPEAIFRCNLHTELKKKR
                     KLALRLGKLSDNTAWILKPQVMKNLLKNPSTQITENDVVLDVKQKGVDMRIGLDISSI
                     TLKKQADKIILFSGDSDFVPAAKLARREGIDFILDPMWNHVPPDLMEHIDGLKTKCPK
                     P"
     gene            6919..7614
                     /locus_tag="ACFOCA_000626"
     CDS             6919..7614
                     /locus_tag="ACFOCA_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HFC6987388.1"
                     /translation="MKLKTLALTSLTLLALAACSKQAETSVPADSAQSSSSAPAAPAE
                     LNEGVNYTVLSTPIPQQQAGKIEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
                     HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
                     DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
                     LVDKVREEQKKPQ"
     gene            complement(7945..9315)
                     /gene="ffh"
                     /locus_tag="ACFOCA_000627"
     CDS             complement(7945..9315)
                     /gene="ffh"
                     /locus_tag="ACFOCA_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFC6987389.1"
                     /translation="MLDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVA
                     LPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
                     VLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
                     PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
                     FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
                     EKINGLEPFHPDRLASRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLQKGKGFDLNDF
                     KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
                     ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRMAKGMKGMK
                     GMFPGL"
     gene            9535..10341
                     /locus_tag="ACFOCA_000628"
     CDS             9535..10341
                     /locus_tag="ACFOCA_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HFC6987390.1"
                     /translation="MPTVFIFLTAVYAGLGAFAWHCQQQGRGRDYPWKTELPVLGAAL
                     TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAAL
                     MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRSF
                     SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
                     SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR"
     gene            10798..12338
                     /locus_tag="ACFOCA_000629"
     rRNA            10798..12338
                     /locus_tag="ACFOCA_000629"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            12439..12515
                     /locus_tag="ACFOCA_000630"
     tRNA            12439..12515
                     /locus_tag="ACFOCA_000630"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12473..12475,aa:Ile,seq:gat)
     gene            12521..12596
                     /locus_tag="ACFOCA_000631"
     tRNA            12521..12596
                     /locus_tag="ACFOCA_000631"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12554..12556,aa:Ala,seq:tgc)
     gene            13003..15894
                     /locus_tag="ACFOCA_000632"
     rRNA            13003..15894
                     /locus_tag="ACFOCA_000632"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            15991..16104
                     /gene="rrf"
                     /locus_tag="ACFOCA_000633"
     rRNA            15991..16104
                     /gene="rrf"
                     /locus_tag="ACFOCA_000633"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            16140..>16545
                     /locus_tag="ACFOCA_000634"
     CDS             16140..>16545
                     /locus_tag="ACFOCA_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFC6987391.1"
                     /translation="MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARC
                     GLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAE
                     YRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQAS"
BASE COUNT         4169 a         3977 c         4535 g         3864 t
ORIGIN      
        1 atccaacggg catcgctgtc cttactcggt gtggtttggc cgttgatttg tcctttttca
       61 tcgacttcta tttttgccgg cgatgggaac ggtgtcggct tgggtggcgg tgatttgggc
      121 atacctgatg attgaaagtg aaaaaaacgg aagatattga gtcattcgga cgcaatgccg
      181 tctgaaacgg aagttcagac ggcatttgtt ttaggttccg taccgcttag ggaataccgg
      241 cgacaggata ggcgggatag ccgtgggtat cgaccgaaca ggcaaaccgc caaggcgtgt
      301 ggacggtgtc ggcggacagg tgggcgagtt cgggaatgtg ccgtttgata aaagtaccgt
      361 ccgggtcggt acggtatgag gcggcggcaa tgtcggggca ggtgtgccgt gaggcggcaa
      421 gccaccagtt gccttggttg attgccgcat cgaaatcggt cagctgccgg gcaaaccata
      481 tctcgccttc gcggcggggg aggtttaaaa cgtggcagaa aaaatccgcg ctcaagcgtc
      541 tcagggcggg gtggaggctg ccggttttgt gcaaacagcg catcgcggca tcgataatcg
      601 gaatgccggt ctggccctgc tgccaaagcg tcaggcgcag ggtgtgttcc ggattgccgt
      661 ctgaagggcc gtcatccgtg tgctgcaagg caagttgaag gaaaaaatcg cggcggatga
      721 tgttgtccgc ccacgcgttc agacggcgtt cgaggctttc ccgcgcgagc aggcgcggcg
      781 agatgcagcc ggcactcaaa tacgcgccca tcagcgaagt gtgtttgcgc gaggggaaat
      841 cctttaaaac ggagtaggaa tccgcctgtt cgagaaaccg ccgccactgc cgccaagccg
      901 ccgtttcgcc gctgttttgc ggcaggaaga tgccgtctga aagggcggca ggcggcgggg
      961 cggaaaggtt ttcggggaag ggttggcggt atgccgcgaa taggttcgga ccggcggggg
     1021 gctgcttgga aaagcggtcg agccatactt cgcggtagcg gtcgaaatcg gtgtgtgccg
     1081 tgccgccgtc gggtatcagg tcggttttgc cgaaaacggc gcggtcattg acgaaggtta
     1141 acgcgatgcc gtgtttgtcc aattcatgcc aaagggcgtt gtcggcgagt ttgtcggcaa
     1201 aagtatggga ttcgtcggcg atgacggcgc ggatattgag gcggacggcg agccggacga
     1261 gctcggcagg cgatgccgcc gtgtagagcg ggatgccgcg ccctgcaagc ccttgggcga
     1321 gttcggcggc ggattggcgg tagaacgcgg cgcggcgagg gttgtctgtt tcggcatcgt
     1381 caatccaaat accgataacg ggcaaacctt cggcaacggc ggtgcataag gcggcgttgt
     1441 cgcggatgcg gaggttttgg cggaaccaga cgagcgtgtg tgcggcgcac gtgtccgcat
     1501 aaagggggcg ggcggtttca gacggcattt cggcagcctt tcctgctggc gattttttcg
     1561 ttcagaaaat cgatgaagct gcggactttc gcgcttaaga acgccctgtc cgcataaacg
     1621 gcattcaggc ggtcggtcgg gacggtatat tcgggcagca gcctcaccag cgagccgcag
     1681 cgcaaatcgt gttccgccgc ccaaagcggc tgataaccga tgcacgcgcc cgccttaatc
     1741 atttcgcgca tcatcagcgt gttgtcggta cggatgacgg gggtcagttc aagccggtat
     1801 tttttgccgt ccgatttgcg ggtgaggtcg agtttctgct ggttggtgta ggtcggcagg
     1861 acggcgggca gccccgccac ttcttccggc gtttccggta cgccgttgcg cctcaggaaa
     1921 tcgggcgagg cgagcagggc aaattcgatt tccgccagcg ggcgcgcaat cagcgacggg
     1981 gacagggttt gggaaacgcg caacgccaaa tccacgcctt cggcaatcaa atcgacgtgg
     2041 cggttgtcca aaatcagttc taatgtcact tcgggataac gttcgcggta ttccgccagc
     2101 cagttgcata tctggctgcc ggcaaaccac agtggcatcg ttacgcgcag cagcccctgc
     2161 ggtttttccg tccccccggc ggctttttgc gcggcatcgt cgagcgtgtc gagcgcgtaa
     2221 ctgcattgcc ggtagtattc ttccccggct tcggtcaggc tgaggttgcg gctgttgcgg
     2281 tgcaggagtt tggcttggac ggtgttttcc aagtggctga cgtgtttgct tgccattgcg
     2341 gtggagatgc cgagcgcgtc ggcggcgcgg gtgaagccgc cgctttggac gacttggcgg
     2401 aaaaccttga ggctgaacag ggtgtccata ttttcttgtg tggaaaagtt gtatcaataa
     2461 aagcagtata tatttgaaaa ggggaaacat ctatactcta ccgcctgaaa tgaagacaaa
     2521 tatcaaagga gcttttatgt ccgattgctg caaccgtatc caaccggttt tgctttctgt
     2581 tttgcgtatc gtaaccgctt acctgttttt gttgcacggt acgtcgaaaa tcttcgcctt
     2641 ccccattgaa atgggcagcg gttcgcccgg cgggctgttg ctgcttgccg gtattttaga
     2701 aattgtcggc ggcattttgc tggtgttggg cctgtttgcg cgccctgccg cgtttgtttt
     2761 gtccggccag atggcggttg cctattttat ggcgcacgct tccggaaatg ctttgttccc
     2821 gattgccaac ggcggcgagt ccgcagtgct gttctgcttc gtattcctct atatcgcggc
     2881 ggcgggcggc ggagcatggt cgctggacag gctgtttttc aagcgtaaag cctgaatcag
     2941 actgcctaaa gtgtattttg ttgaatgttt ttgaggaaaa gaaatgaccc gtcaatctct
     3001 gcaacaggct gccgaaagcc gccgttccat ttattcgtta aataaaaatc tgcccgtcgg
     3061 caaagatgaa atcgtccaaa tcgtcgaaca cgccgttttg cacacacctt cttcgttcaa
     3121 ttcccaatct gcccgtgtgg tcgtgctgtt tggcgaagag catgataagg tgtggcaatt
     3181 tgtcgaagac gcgctgtgtg ccgtcgtgcc tgccgacagt tttgaaccga ccgcgcaaaa
     3241 attgaacctg tttaaggcgg gtgcggcaac tattttgttt tatgaagatc aaaatgtcgt
     3301 caaaggtttg caggagcagt tccctgctta tgccgccaac tttcccgttt gggcggacca
     3361 ggcgaacgcg atggtgcagt atgccgtttg gacgacactt gccgcggtcg gcgtaggtgc
     3421 aaacctgcaa cattacaatc ccttgcccga tgcggcgatt gccaaagcgt ggaatatccc
     3481 cgaaaactgg ttgttgcgcg cacaaatggt tatcggcggt attgaagggg cggcaggtga
     3541 aaagaccttt gaaccagttg cagaacgttt gaaagtgttc ggcgcataat ttcgcggtca
     3601 aaaaaatgcc gtctgaaccc tgttcagacg gcatttttca gtatcaggcg gcgagttttc
     3661 cgcattctga gacctttgtt tacaaatatc atgttcaata tagttaaaag aaattattct
     3721 catttcctcc gtgaggcaat ataattcggt tgttttgtta aattgagtat aaaaatgaaa
     3781 atatcatttc atttagcttt attacccacg ctgattattg cttccttccc tgttgctgcc
     3841 gccgatacgc aggacaatgg tgaacattac accgccactc tgcccaccgt ttccgtggtc
     3901 ggacagtccg acaccagcgt actcaaaggc tacatcaact acgacgaagc cgccgttacc
     3961 cgcaacggac agctcatcaa agaaacgccg caaaccatcg atacgctcaa tatccagaaa
     4021 aacaaaaatt acggtacgaa cgatttgagt tccatcctcg aaggcaatgc cggcatcgac
     4081 gctgcctacg atatgcgcgg cgaaagcatt ttcctgcgcg gttttcaagc cgacgcatcc
     4141 gatatttacc gcgacggcgt gcgcgaaagc ggacaagtgc gccgcagtac tgccaacatc
     4201 gagcgcgtgg aaatcctgaa aggcccgtct tccgtgcttt acggccgcac caacggcggc
     4261 ggcgtcatca acatggtcag caaatacgcc aacttcaaac aaagccgcaa catcggtgcg
     4321 gtttacggtt cgtgggcaaa ccgcagcctg aatatggaca ttaacgaagt gttgaacaaa
     4381 aacgtcgcca tccgtctcac cggcgaagtc gggcgcgcca attcgttccg cagcggcata
     4441 gacagcaaaa atgtcatggt ttcgcccagc attaccgtca aactcgacaa cggcttgaag
     4501 tggacggggc aatacaccta cgacaatgtg gagcgcacgc ccgaccgcag tccgaccaag
     4561 tccgtgtacg accgcttcgg actgccttac cgcatggggt tcgcccaccg gaacgatttt
     4621 gtcaaagaca agctgcaagt ttggcgctcc gaccttgaat acgccttcaa cgacaaatgg
     4681 cgtgcccaat ggcagctcgc ccaccgcacg gcggcgcagg attttgatca tttctatgca
     4741 ggcagcgaaa atggcaactt aatcaaacgt aactacgcct ggcagcagac cgacaacaaa
     4801 accctgtcgt ccaatttcac gctaaacggc gactacacca tcggccgttt tgaaaaccac
     4861 ttgaccgtag gcatggatta cagccgcgaa caccgcaacc cgaccttagg ttacagccgc
     4921 gcctttactg cttccatcga tccatacgac cgagcaagct ggccggcttc gggcagattg
     4981 cagcctatcc tcacccaaaa ccgccacaaa gccgactcct acggcatctt tgtgcaaaac
     5041 atcttctccg ccacgcccga tttgaaattc gtcctcggcg gtcgttacga caaatacacc
     5101 tttaattccg aaaacaaact caccggcagc agccgccaat acagcggaca ctcgttcagc
     5161 cccaacatcg gcgcagtgtg gaacatcaat cccgtccaca cactttacgc ctcgtataat
     5221 aaaggcttcg cgccttatgg cggacgcggc ggctatttga gcatcaacac gtcgtcttcc
     5281 gccgtgttca acgccgaccc cgagtacacc cgccaatacg aaaccggtgt gaaaagcagt
     5341 tggctggacg accgcctcag cactacgttg tctgcctacc aaatcgaacg cttcaatatc
     5401 cgctaccgcc ccgacgagca aaatgatccc tacacttggg cagtcggcgg caaacaccgt
     5461 tcgcgcggcg tggaattgtc cgccatcggg caaatcatcc ccaaaaaact ctatctgcgc
     5521 ggttcgttgg gcgtgatgca ggcgaaagtc gttgaagaca aagaaaatcc cgaccgagtg
     5581 ggcatccatt tgaataacac cagcaacgtt accggcaacc tgtttttccg ttataccccg
     5641 accgaaaacc tctacggcga aatcggcgta accggtacag gcaaacgcta cggttacaac
     5701 tcaagaaata aagaagtgac tacgcttcca ggctttgccc gagttgatgc catgcttggc
     5761 tggaaccata aaaatgttaa cattaccttt gccgcagcca atctgctcaa tcaaaaatat
     5821 tggcgttcgg atgccatgcc cggcgcgccg cgcacttata cggcgcgggt taattacagt
     5881 ttctaatccc gttcgtgcaa cagaatgccg tctgaaaatc ctgataatcc gtaaattcag
     5941 cacacgaact ttttgacagg ctttatctac atcagtataa tccaaaaaga aatagcgccc
     6001 ttggcagtac gcattaccca ttaaatcata gcgggtatgc cgatcccaag ggctttttta
     6061 tatctttgac aaatataggg gaagcaatat gaaaaccgcc attttgattg acggtgcatt
     6121 ttttattaag cgggtacggt cattaggcct gtctcaaaat ccacacgatg caaaaagaat
     6181 tgctgatttg gctttccgat attcgatgct gcatctgaaa gataaaatca acggcacaga
     6241 tcaaatggat gatttatata gaattttctt ttacgactgc gtgccgtttg aaaagaaaat
     6301 gcacaatccc gtatctcatc gtgccataga tttttcaaag actccggaag ccatatttcg
     6361 ttgcaatctg cataccgaat tgaagaagaa gcgtaaatta gcgttacgtt taggcaagct
     6421 gtcggacaat acagcatgga tattaaaacc ccaagtcatg aaaaatcttc tgaaaaaccc
     6481 gtcaactcaa attacggaaa acgatgtcgt gctcgatgtt aaacaaaaag gtgtagatat
     6541 gcgtataggc ttggatattt catctattac cttaaaaaaa caagccgata aaatcatctt
     6601 gttttctggt gattccgatt ttgtcccagc agccaaatta gccagacggg aaggtatcga
     6661 ttttattctt gatcctatgt ggaatcatgt cccacctgac ttaatggaac acatcgacgg
     6721 attgaagaca aaatgtccga aaccgtaaat tactagaaca aaggccgtct gaaaataagg
     6781 ctaattatct aagccatatt tcagacggcc tttataaagg ctgaaataaa actaaacaca
     6841 ttttttcact caaatcgaac acgccttcaa taaaatgcca taaaatccgc acattaatct
     6901 gacacacaag agatacctat gaaactgaaa accttagctt tgacttcatt gaccctgttg
     6961 gcattggccg cttgtagcaa acaggctgaa accagtgttc cggcagacag cgcccaaagc
     7021 agctcatctg ctccggcagc ccctgctgag ttgaacgaag gtgtgaacta cactgtattg
     7081 tctacgccta ttccgcaaca gcaggccggt aaaatcgaag tattggaatt tttcggctac
     7141 ttctgcccgc attgcgccca tcttgagccg gtcttgagcg agcacatcaa aacgtttaaa
     7201 gacgatacct atatgcgccg ggagcatgtc gtgtggggtg atgaaatgaa acctttggca
     7261 cgtttggcgg ccgcagtgga aatggccggt gaatcagata aagccaacag ccatattttc
     7321 gatgcgatgg ttaatcaaaa aatcaatctg gccgataccg ataccctgaa aaaatggctg
     7381 tccgagcaaa cagcgtttga cggcaaaaaa gtattggctg catttgaggc tcctgaaagc
     7441 caagcgcgtg cggctcaaat ggaagagttg accaataaat tccaaatcag cggcacaccg
     7501 actgtgattg tcggcggcaa ataccaagtt gaatttaaag actggcagtc tggtatgacc
     7561 acgattgacc agttggtgga taaagtacgc gaagagcaga aaaagccgca ataagttgag
     7621 gattgaatga gtaaaggcca tctgaaaata ggatttcaga cggccttttg tatttaggct
     7681 ttatagaaga gatgattgct taaagcctta tggttttaaa tcagaatata tagcggatta
     7741 acaaaaacca gtacggcgtt ggctcgcctt agctcaaaga gaacgattct ctaaggtgct
     7801 gaagcaccaa gtgaatcggt tccgtactat ctgtactgtc tgcggctcgc cgccttgtcc
     7861 tgatttttgt taatccacta taaatcagaa tataaaacaa aaacgccgtc tgaaatttta
     7921 gacggcgttt tcggtcaaat cggcttacaa acccgggaac attcctttca ttcccttcat
     7981 tcctttcgcc atacgcatca gtttgcccaa gccgttgccg ctgaacatct tcatcatttg
     8041 ttgcatttgt tcaaactgtt tgagcaattt gttcacttcc tgtacggtcg tgcccgcacc
     8101 cattgcaata cggcgtttgc ggctggcttt gagcagggca gggttggcgc gttctttagg
     8161 ggtcatcgag ttgatgatgg cttctacttt acccatcgct ttttcagccg taccttcggg
     8221 gatttgtttc gatatttgac ccagttcgcc cggcattttc gacatcaggt tttccaaacc
     8281 gcccatattg cgcatttgct ggatttgttc tttaaagtcg ttgaggtcga agcctttgcc
     8341 tttttgcagc tttttcgcca ttttggcggc ggcttcttca tcaatacctt tttgaacgtc
     8401 ttcaatcagg gtcaatacgt cgcccatgcc gaggatacgg ctggcaagac ggtcggggtg
     8461 gaaaggttcg aggccgttga ttttttcgcc gacaccgata aatttaatcg gtttgccggt
     8521 tacatggcgt acggacaatg ccgcaccgcc gcgcgagtcg ccgtccatct tggtcaatac
     8581 gactccggtc agcggcaggg cttcattaaa tgcctgagca gtgttcaccg catcctgacc
     8641 cagcatcgca tcgatgacga acaaagtttc caccgggtta accgccgcgt gaagggcttt
     8701 gatttcgttc atcatctctt catcgattgc cagacggccg gcggtatcga ccatcaaaac
     8761 atcgtaaaaa tgttttttgg cgtaatcgac ggcggcagtt gcaatttcaa ccggtttttg
     8821 gttggtatcg gatgggaaaa agtccacgcc gacctgttcg gccaacaggc gcagttgttc
     8881 aatcgcggca gggcggtaaa cgtcggcaga tacgaccaaa acctttttct tctgatcgtt
     8941 tttcagcagg cgggcgagtt tgccggcggt cgtcgtcttg cccgcgccct gcaaacctgc
     9001 catcaacacg acggcgggcg gcgcaaccga caaatccagc gttttgtttt ccctgcccat
     9061 cagttcggtc agggctttgt tgaccacgcc gataaatgcc tgatccggcg tcaggctgcc
     9121 agccacttcc tgaccgaggg ccttttcttt gacgttgttg acgaactctt tgacgacagg
     9181 cagggcgaca tccgcctcaa gcagggcgag gcggacttcg cgcaaggcct ctttaatatt
     9241 gtcttcggtc agtttggcct gcccccggat gtttttgaag acattgctga agcggccggt
     9301 taaattgtct aacatactgg tccttggtct gaataagaat agcttgcccc atcaggggca
     9361 ttctttgtta aaataaaatc aaaataattt gatgcggctt gtgtgccgga cagcatatcg
     9421 gcaaatccgt caaggcttgc ccgaaacggg gattttacaa ttccaacgtt aaaagttcca
     9481 atatttcata agcggccgca gacggcgcaa cagtatagat agagaaagtc caccatgccg
     9541 acagttttca tctttttgac ggcggtttac gcaggattgg gtgcatttgc atggcactgc
     9601 caacagcagg ggcgcggccg ggattacccg tggaagacgg aattgccggt tttgggcgcg
     9661 gcattgaccg tccacggcgc ggcactgctt atgccggtca ttcaagacaa aatcatcatt
     9721 atgggcttcg ggtattccgg cagcctgatt gtttggatga tgctgtttat ttattttgcc
     9781 ggcagcttct tttatccgct gcgcggagtg cagttgctgc tgtatccttg cgccgcactg
     9841 atgctgctgt caggtttggt ttttcctgga aaattctcgg gatatgaaat taccgacctt
     9901 ccctttatgc tgcatatcgg aacttcgctg cttgcatacg ggctgttcgg catcgcaaca
     9961 ttattgtccg ttttgaccct gctgctgaat cggagcctgc accgcaggag cttctccaag
    10021 ctcgcaggat tcctgccgtc gctgctcagt ttggaaaaac tcatgttcca ggccatgtgg
    10081 gcaggtttca tcctgctgac ctattccgtc gtcagcggca cattcttcgc cgaagccgta
    10141 ttcggcaaac ccatgacctt tacccataaa accgtattcg gcatattgtc atggctgatt
    10201 tacggcggac tgctgctcaa gcacagcatg accgcatggc gcggtaaaaa agccgccgtg
    10261 tggaccatca tcggatttgt cagccttatg attgcctata tgggcagcaa gttcgtattg
    10321 gaaatcattc tgaaaagata agaagagcca acagatgccg tctgagtccc cgagtttcag
    10381 acggcatatt cacaaaggcg caccagccgg aggagggaga ggaaaggatt gttggaggtg
    10441 gtgcagcgtt tggcgaaaat aaaaaaacct tatccgacag cgacatgacg aatttcccca
    10501 aaaaaatccc actgaaagca ttgaccgttt ttccctgtgg gcgtatagtt cggttcttcg
    10561 ctgctgcaga agcggcggac gaactgaaaa gtatagcaca gaatgttggg gatatcgaga
    10621 gatatcttga caggcggaag aaatacttta taattcaaac gctctttaac aaaacagatt
    10681 accgataagt gtgagtgcct tgagcctcac actgtttgaa agacagacaa gataatgttt
    10741 tgaacattgt cctgttggtt tctttgaagc agaccagaag ttaaaaagtt agagattgaa
    10801 cataagagtt tgatcctggc tcagattgaa cgctggcggc atgctttaca catgcaagtc
    10861 ggacggcagc acagagaagc ttgcttctcg ggtggcgagt ggcgaacggg tgagtaacat
    10921 atcggaacgt accgagtagt gggggataac tgatcgaaag atcagctaat accgcatacg
    10981 tcttgagaga gaaagcaggg gactttcggg ccttgcgcta ttcgagcggc cgatatctga
    11041 ttagctagtt ggtggggtaa aggcctacca aggcgacgat cagtagcggg tctgagagga
    11101 tgatccgcca cactgggact gagacacggc ccagactcct acgggaggca gcagtgggga
    11161 attttggaca atgggcgcaa gcctgatcca gccatgccgc gtgtctgaag aaggccttcg
    11221 ggttgtaaag gacttttgtc agggaagaaa aggctgttgc taatatcagc ggctgatgac
    11281 ggtacctgaa gaataagcac cggctaacta cgtgccagca gccgcggtaa tacgtagggt
    11341 gcgagcgtta atcggaatta ctgggcgtaa agcgggcgca gacggttact taagcaggat
    11401 gtgaaatccc cgggctcaac ccgggaactg cgttctgaac tgggtgactc gagtgtgtca
    11461 gagggaggta gaattccacg tgtagcagtg aaatgcgtag agatgtggag gaataccgat
    11521 ggcgaaggca gcctcctggg acaacactga cgttcatgcc cgaaagcgtg ggtagcaaac
    11581 aggattagat accctggtag tccacgccct aaacgatgtc aattagctgt tgggcaactt
    11641 gattgcttag tagcgtagct aacgcgtgaa attgaccgcc tggggagtac ggtcgcaaga
    11701 ttaaaactca aaggaattga cggggacccg cacaagcggt ggatgatgtg gattaattcg
    11761 atgcaacgcg aagaacctta cctggtcttg acatgtacgg aatcctccag agacggagga
    11821 gtgccttcgg gagccgtaac acaggtgctg catggctgtc gtcagctcgt gtcgtgagat
    11881 gttgggttaa gtcccgcaac gagcgcaacc cttgtcatta gttgccatca ttcagttggg
    11941 cactctaatg agactgccgg tgacaagccg gaggaaggtg gggatgacgt caagtcctca
    12001 tggcccttat gaccagggct tcacacgtca tacaatggtc ggtacagagg gtagccaagc
    12061 cgcgaggcgg agccaatctc acaaaaccga tcgtagtccg gattgcactc tgcaactcga
    12121 gtgcatgaag tcggaatcgc tagtaatcgc aggtcagcat actgcggtga atacgttccc
    12181 gggtcttgta cacaccgccc gtcacaccat gggagtgggg gataccagaa gtaggtaggg
    12241 taaccgcaag gagtccgctt accacggtat gcttcatgac tggggtgaag tcgtaacaag
    12301 gtagccgtag gggaacctgc ggctggatca cctcctttct agagaaagaa gaggctttag
    12361 gcattcacac ttatcggtaa actgaaaaga tgcggaagaa gcttgagtga aggcaagatt
    12421 cgcttaagaa gagaatccgg gtttgtagct cagctggtta gagcacacgc ttgataagcg
    12481 tggggtcgga ggttcaagtc ctcccagacc caccaagaac gggggcatag ctcagttggt
    12541 agagcacctg ctttgcaagc agggggtcat cggttcgatc ccgtttgcct ccaccaatac
    12601 tgtacaaatc aaaacggaag aatggaacag aatccattca gggcgacatc acacttgacc
    12661 aagaacaaaa tgctgatata ataatcagct cgttttgatt tgcacagtag atagcaatat
    12721 cgaacgcatc gatctttaac aaattggaaa gccgaaatca acaaacaaag acaaagcgtt
    12781 tgttttgatt ttttattctt tgcaaaggat aaaaaatcgc tcacaagaga aaagaaaaca
    12841 aacacagtat ttgggtgatg attgtatcga cttaatcctg aaacacaaaa ggcaggatta
    12901 agacacaaca aagcagtaag ctttatcaaa gtaggaaatt caagtctgat gttctagtca
    12961 acggaatgtt aggcaaagtc aaagaagttc ttgaaatgat agagtcaagt gaataagtgc
    13021 atcaggcgga tgccttggcg atgataggcg acgaaggacg tgtaagcctg cgaaaagcgc
    13081 gggggagccg gcaataaagc aatgattccg cgatgtccga atggggaaac ccactgcatt
    13141 ctgtgcagta tcctaagttg aatacataga cttagagaag cgaacccgga gaactgaacc
    13201 atctaagtac ccggaggaaa agaaatcaac cgagattccg caagtagtgg cgagcgaacg
    13261 cggaggagcc tgtacgtaat aactgtcgag atagaagaac aagctgggaa gcttgaccat
    13321 agtgggtgac agtcccgtat tcgaaatctc aacagcggta ctaagcgtac gaaaagtagg
    13381 gcgggacacg tgaaatcctg tctgaatatg gggggaccat cctccaaggc taaatactca
    13441 tcatcgaccg atagtgaacc agtaccgtga gggaaaggcg aaaagaaccc cgggagggga
    13501 gtgaaacaga acctgaaacc tgatgcatac aaacagtggg agcgccctag aggtgtgact
    13561 gcgtaccttt tgtataatgg gtcaacgact tacattcagt agcgagctta accgaatagg
    13621 ggaggcgtag ggaaaccgag tcttaatagg gcgatgagtt gctgggtgta gacccgaaac
    13681 cgagtgatct atccatggcc aggttgaagg tgccgtaaca ggtactggag gaccgaaccc
    13741 acgcatgttg caaaatgcgg ggatgagctg tggatagggg tgaaaggcta aacaaactcg
    13801 gagatagctg gttctccccg aaaactattt aggtagtgcc tcgagcaaga cactgatggg
    13861 ggtaaagcac tgttatggct agggggttat tgcaacttac caacccatgg caaactcaga
    13921 ataccatcaa gtggttcctc gggagacaga cagcgggtgc taacgtccgt tgtcaagagg
    13981 gaaacaaccc agaccgccag ctaaggtccc caatgataga ttaagtggta aacgaagtgg
    14041 gaaggcccag acagccagga tgttggctta gaagcagcca tcatttaaag aaagcgtaat
    14101 agctcactgg tcgagtcgtc ctgcgcggaa gatgtaacgg ggctcaaatc tataaccgaa
    14161 gctgcggatg ccggtttatc ggcatggtag gggagcgttc tgtaggccga tgaaggtgca
    14221 ttgtaaagtg tgctggaggt atcagaagtg cgaatgttga catgagtagc gataaagcgg
    14281 gtgaaaagcc cgctcgccga aagcccaagg tttcctgcgc aacgttcatc ggcgtagggt
    14341 gagtcggccc ctaaggcgag gcagaaatgc gtagtcgatg ggaaacaggt taatattcct
    14401 gtacttgatt caaatgcgat gtggggacgg agaaggttag gttggcaagc tgttggaata
    14461 gcttgtttaa gccggtaggt ggaagactta ggcaaatccg ggtcttctta acaccgagaa
    14521 gtgacgacga gtgtctacgg acacgaagca accgatacca cgcttccagg aaaagccact
    14581 aagcttcagt ttgaatcgaa ccgtaccgca aaccgacaca ggtgggcagg atgagaattc
    14641 taaggcgctt gagagaactc aggagaagga actcggcaaa ttgataccgt aacttcggga
    14701 gaaggtatgc cctctaaggt taaggacttg ctccgtaagc cccggagggt cgcagagaat
    14761 aggtggctgc gactgtttat taaaaacaca gcactctgct aacacgaaag tggacgtata
    14821 gggtgtgacg cctgcccggt gctggaaggt taattgaaga tgtgagagca tcggatcgaa
    14881 gccccagtaa acggcggccg taactataac ggtcctaagg tagcgaaatt ccttgtcggg
    14941 taagttccga cccgcacgaa tggcgtaacg atggccacac tgtctcctcc tgagactcag
    15001 cgaagttgaa gtggttgtga agatgcaatc tacccgctgc tagacggaaa gaccccgtga
    15061 acctttactg tagctttgca ttggactttg aagtcacttg tgtaggatag gtgggaggct
    15121 tagaagcaga gacgccagtc tctgcggagc cgtccttgaa ataccaccct ggtgtctttg
    15181 aggttctaac ccagacccgt catccgggtc ggggaccgtg catggtaggc agtttgactg
    15241 gggcggtctc ctcccaaagc gtaacggagg agttcgaagg ttacctaggt ccggtcggaa
    15301 atcggactga tagtgcaatg gcaaaaggta gcttaactgc gagaccgaca agtcgagcag
    15361 gtgcgaaagc aggacatagt gatccggtgg ttctgtatgg aagggccatc gctcaacgga
    15421 taaaaggtac tccggggata acaggctgat tccgcccaag agttcatatc gacggcggag
    15481 tttggcacct cgatgtcggc tcatcacatc ctggggctgt agtcggtccc aagggtatgg
    15541 ctgttcgcca tttaaagtgg tacgtgagct gggtttaaaa cgtcgtgaga cagtttggtc
    15601 cctatctgca gtgggcgttg gaagtttgac gggggctgct cctagtacga gaggaccgga
    15661 gtggacgaac ctctggtgta ccggttgtaa cgccagttgc atagccgggt agctaagttc
    15721 ggaagagata agcgctgaaa gcatctaagc gcgaaactcg cctgaagatg agacttccct
    15781 tgcggtttaa ccgcactaaa gagtcgttcg agaccaggac gttgataggt ggggtgtgga
    15841 agcgcggtaa cgcgtgaagc taacccatac taattgctcg tgaggcttga ctctatcatt
    15901 tgaagaactt caagagataa aagcttactg actgattcag tcattaccga atatattgat
    15961 taaggcttta ccgatttgta acagtttaag tttggcggcc atagcgagtt ggtcccacgc
    16021 cttcccatcc cgaacaggac cgtgaaacga ctcagcgccg atgatagtgt ggttcttcca
    16081 tgcgaaagta ggtcactgcc aaacaccctt tcagaaaacc cccgattatt cgggggtttt
    16141 tgctttaccc ggaaaaaatg tcggggatgg cgggacggca tccgtacggc gtccggtcgg
    16201 gtttgcggag gaacggcttg aaactttggg atattcattt tagaatgacc cgttttatcg
    16261 tcgcaagatg cggtttattg tttgcaaccc ttaaaggaaa aaccatgaag aaaatgttcg
    16321 tgctgttctg tatgctgttc tcctgcgcct tctcccttgc ggcggtaaac atcaatgcgg
    16381 cttcgcagca ggagttggag gcgctgccgg gcataggccc tgcgaaggcg aaggccattg
    16441 cggaataccg tgcgcaaaac ggtgcgttca agtctgtgga cgatttgacc aaggtaaagg
    16501 gcatcggccc tgcggtgctg gcgaagctga aggatcaggc ttctg
//
LOCUS       DAXIFS010000025        16272 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.025, whole genome shotgun sequence.
ACCESSION   DAXIFS010000025 DAXIFS010000000
VERSION     DAXIFS010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16272
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.025"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            138..974
                     /gene="cysT"
                     /locus_tag="ACFOCA_000635"
     CDS             138..974
                     /gene="cysT"
                     /locus_tag="ACFOCA_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HFC6987392.1"
                     /translation="MLPLKTPGVLPGFKLSLGLTVLCLSLLVVLPFAMMAAKAAEIGW
                     GGFWNTIAEPNVLAAVWLSLRMSFYAMLTNVVFGTLVAWVLVRYEFPGKGLANALVDL
                     PFALPTAVTGIALATLYAPNGWIGRFFEPLGIKIAFTPVGIWIALVVVSLPFIVRAVQ
                     PVLEELSGEYEEAAATLGANRFTTFRRVLLPEITPALLTGAGMMFARATGEYGSVIFI
                     AGNIPMVSEILPLIITGKLEQFDVQGASAVALFMLLVSFVILFALNVMQWALGRRSGA
                     KG"
     gene            1226..2086
                     /gene="cysW"
                     /locus_tag="ACFOCA_000636"
     CDS             1226..2086
                     /gene="cysW"
                     /locus_tag="ACFOCA_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HFC6987393.1"
                     /translation="MKPYSANPNLTEPRRLRVLLIAAALGFLLLMLVVPLVAVFYEAL
                     KGGWDLYLKSLNDPEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTT
                     LLDLPFSVSPVVAGLMFVLLFGAHTALGGWLEAQGIQIIFAIPGIILATLFVTFPFVA
                     REIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGA
                     VSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIITKLQDK
                     KLAAAERNAV"
     gene            2083..3156
                     /locus_tag="ACFOCA_000637"
     CDS             2083..3156
                     /locus_tag="ACFOCA_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFC6987394.1"
                     /translation="MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTL
                     LRIIAGLENADGGKILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVL
                     PKSERPSKEQICTKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLL
                     DEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQT
                     GSAEAIYRKPENAFVTEFLGETDAFEGRIEKGFWHYNGFAWKLDAQYKWQEQTATGYI
                     RPHEWQIAAEHETPMICAEIEKVHAVGALTHILVKHGKQDVHITLAGSDAARYPIAEG
                     KELKLIPKQVYVFSQNELIEYSI"
     gene            complement(3213..4739)
                     /gene="ilvA"
                     /locus_tag="ACFOCA_000638"
     CDS             complement(3213..4739)
                     /gene="ilvA"
                     /locus_tag="ACFOCA_000638"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HFC6987395.1"
                     /translation="MNTPLPYSNYLIRILTASVYDVAVETPLEPARSLSVRLKNNILL
                     KREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIV
                     MPETTPKIKVDAVKSHGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQ
                     GTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQS
                     VEAGEIVHLKDVGLFSDGTAVKVVGDETFRLCKELLDEIITVDTDAVCGAVKDIFDDT
                     RSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEG
                     IFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSR
                     LDEAGLPNVDLTDDEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQG
                     GWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
                     "
     gene            4887..6056
                     /locus_tag="ACFOCA_000639"
     CDS             4887..6056
                     /locus_tag="ACFOCA_000639"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HFC6987396.1"
                     /translation="MTAHKILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETL
                     TAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPES
                     AWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEA
                     RRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQ
                     NNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSK
                     LLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQIL
                     ETIQPIPAPVKKGQILGKIKIRQNGYTIAEKEIVALENVKKRSRWQRLWARLTGQ"
     gene            complement(6181..6753)
                     /locus_tag="ACFOCA_000640"
     CDS             complement(6181..6753)
                     /locus_tag="ACFOCA_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFC6987397.1"
                     /translation="MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVD
                     HKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQPVR
                     IRVPLHIVNAENSQAVKLQGGRVSLLNTSVEVVALPANIPAFLDLDCAEVVAGDILHL
                     SDIKLPEGVESVSLKRNENLAVATVTGKKR"
     gene            complement(6820..7803)
                     /locus_tag="ACFOCA_000641"
     CDS             complement(6820..7803)
                     /locus_tag="ACFOCA_000641"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFC6987398.1"
                     /translation="MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVA
                     VELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDR
                     RPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIK
                     QQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTC
                     LIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT
                     IPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP"
     gene            complement(7970..8045)
                     /locus_tag="ACFOCA_000642"
     tRNA            complement(7970..8045)
                     /locus_tag="ACFOCA_000642"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8010..8012),aa:Gln,seq:ttg)
     gene            complement(8053..8898)
                     /gene="ispE"
                     /locus_tag="ACFOCA_000643"
     CDS             complement(8053..8898)
                     /gene="ispE"
                     /locus_tag="ACFOCA_000643"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFC6987399.1"
                     /translation="MNIADGRQAFPAPAKLNLDLRITGRREDGYHNIESIFCLIDLQD
                     TVYLKPRDDGKIILHNPVDGMPQEADLSYRAASLLQKYARNPAGVEIWLDKKIPTGAG
                     LGGGSSDAATVLLVLNRWWQCSRTTQQLIDLGATLGADVPFFIFGKNAFASGIGEKLI
                     GMDIPKQWYVIVKPPVHVSTAKIFTHEGLTRNSASSIMPTFQNLQPFRNDMQAVVFKE
                     YPEVWKAYSELSRYGFALMTGSGACVFTACQDRDSAYNIYRQVSGLYEAYLAEGLSKH
                     PLLSV"
     gene            complement(8908..9489)
                     /locus_tag="ACFOCA_000644"
     CDS             complement(8908..9489)
                     /locus_tag="ACFOCA_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HFC6987400.1"
                     /translation="MKHTVSASVILLLTACAQLPQNNENLWQPSEHISSFAAEGRLAV
                     KAEGKGSYANFDWTYQPLVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAE
                     ELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTL
                     QLNNGNLNIRLVFTEIGIPSETETPERCAARTR"
     gene            complement(9629..11467)
                     /locus_tag="ACFOCA_000645"
     CDS             complement(9629..11467)
                     /locus_tag="ACFOCA_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6987401.1"
                     /translation="MLPARFTILSVLAAALLAGQAYAAGAADAKPPKEVGKVFRKQQR
                     YSEEEIKNERARLAAVGERVNQIFTLLGGETALQKGQAGTALATYMLMLERTKSPEVA
                     ERALEMAVSLNAFEQAEMIYQKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLEEV
                     LAQADEGQNRRVFLLLAQAAVQQDGLAQKASKAVRRAALKYEHLPEAAVADVVFSVQG
                     REKEKAIGALQRLAKLDTEILPPTLMTLRLTARKYPEILDGFFEQTDTQNLSAVWQEM
                     EIMNLVSLHRLDDAYARLNVLLERNPNADLYIQAAILAANRKEGASVIDGYAEKAYGR
                     GTGEQRGRAAMTAAMIYADRRDYTKVRQWLKKVSAPEYLFDKGVLAAAAAVELDGGRA
                     ALRQIGRVRKLPEQQGRYFTADNLSKIQMFALSKLPDKREALRGLDKIIEKPPAGSNT
                     ELQAEALVQRSVVYDRLGKRKKMISDLERAFRLAPDNAQIMNNLGYSLLSDSKRLDEG
                     FALLQTAYQINPDDTAVNDSIGWAYYLKGDAESALPYLRYSFENDPEPEVAAHLGEVL
                     WALGERDQAVDVWTQAAHLTGDKKIWRETLKRHGIALPQPSRKPRK"
     gene            complement(11632..12468)
                     /gene="panC"
                     /locus_tag="ACFOCA_000646"
     CDS             complement(11632..12468)
                     /gene="panC"
                     /locus_tag="ACFOCA_000646"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFC6987402.1"
                     /translation="MQIIHTIQELRAWRKNAGTVAFVPTMGNLHEGHLALVREAKKRA
                     DNVVVSIFVNRLQFGQGEDFDKYPRTLQQDADKLEAEGVAVVFAPDEKELYPNVEQRY
                     NVEPPNLQNELCGKFRPGHFRGVATVVSKLFNIVAPDVACFGKKDYQQLAVIKGLTED
                     LNFDVEIVPVDTGRAEDGLALSSRNQYLSAAERDEAPRLYRELKAVAESLAQGSLDYA
                     GLERQAADHLTAAGWVVDYVEIRRADTLEVARAGDKKLVVLAAARLGTTRLIDNLEIK
                     LP"
     gene            complement(12591..13382)
                     /gene="panB"
                     /locus_tag="ACFOCA_000647"
     CDS             complement(12591..13382)
                     /gene="panB"
                     /locus_tag="ACFOCA_000647"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFC6987403.1"
                     /translation="MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVDVLLVGDS
                     LGMAVQGRQSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL
                     MAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA
                     LLNDAKAHDDAGAAVVLMECVPAELAKKVTESVSCPTIGIGAGVDCDGQVLVMHDMLG
                     IFPGKTVKFVKNFMQGQSSIQAAVRAYVAEVKAKTFPAAEHIFAD"
     gene            complement(13524..13599)
                     /locus_tag="ACFOCA_000648"
     tRNA            complement(13524..13599)
                     /locus_tag="ACFOCA_000648"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13564..13566),aa:Thr,seq:tgt)
     gene            13765..14556
                     /locus_tag="ACFOCA_000649"
     CDS             13765..14556
                     /locus_tag="ACFOCA_000649"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HFC6987404.1"
                     /translation="MARHPYRRLRPAKSGFPEVGISEEGNIRSLHLGSDTVQSSMNLD
                     HPSELVLSYSRAMMGWLLFTDALPQHITQIGLGGGSFARWIDTYLPDTRQTAVDINPQ
                     VIAIARNLFELPFEGEKFEIIEADGAEYIKVFRHNTDVILVDGFDGEQIIDALVEEPF
                     FRDCRNALSSDGIFVTNWWSGDKRYQRFIERLLSVFEGRVLELPAESHGNVAVMAFQS
                     SPKEQNIDKLKKRADKLSNAYGLDFHRMLAGLKASNPNNGKHFHL"
     gene            14611..15252
                     /locus_tag="ACFOCA_000650"
     CDS             14611..15252
                     /locus_tag="ACFOCA_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6987405.1"
                     /translation="MLKPETIHISGPAGILETIHIPSEQVPARGVAVINHPNPLQGGT
                     NTNKVIQTAAKALSKLGFHCYLPNLRGVGGSEGTHDYGRGETQDCLAVIDYARAQHPE
                     APEFALSGFSFGGYVATFAAQARIPDLLLLIGAAVCHYTGRPEPSAVPNVAKTLMIHG
                     AEDEVVEIGKALKWAEPQDLPVITIAGSTHFFHGKLIVLRDTILRFAPVCLNG"
     gene            complement(15330..16253)
                     /locus_tag="ACFOCA_000651"
     CDS             complement(15330..16253)
                     /locus_tag="ACFOCA_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6987406.1"
                     /translation="MKKRNNPLPLLNGVKPSYLVLPHEKQFYGLPLLHFLCIRFPFVG
                     ADDWRRRLNSGFVVGSDGATLDEHTLFEPGKVMFYYRETSSEDEPRIPFEEKILHIDE
                     HLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAGVMLL
                     SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEAEGE
                     PNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSED
                     YRKPLKLLAKKIAFADPLSGRERVFCSGFCL"
BASE COUNT         3889 a         4707 c         3900 g         3776 t
ORIGIN      
        1 aaaacatcgc gcccgcttga gaaactgcca accgctttat aacaaattcg tctttgcacc
       61 aaactttcca ttctttccgt ttttcggacg gcatcgttaa agtagtcctt ccttttcctt
      121 attttcagca ttgttttatg ttaccgctca aaacgcccgg cgtactgccc ggcttcaaac
      181 tcagccttgg tctgaccgta ttgtgcctgt cgctgcttgt ggtcttgccg tttgcgatga
      241 tggcggcgaa ggcggcggaa atcggctggg gcggcttttg gaacacgatt gccgaaccca
      301 atgtcttggc ggccgtctgg ctgagtttgc ggatgtcgtt ttatgcgatg ctgaccaatg
      361 tcgtgttcgg cacgctggtg gcgtgggtat tggtgcgtta tgaattcccg ggcaagggtc
      421 tggcgaacgc gctggtcgat ttgccgtttg cgctgccgac ggcggttacg ggtatcgcgt
      481 tggcgaccct gtatgcgccc aacggttgga taggccgttt tttcgagcct ttgggcatca
      541 aaatcgcgtt tacgcccgtc ggcatttgga ttgcgctggt cgtcgtcagc ctgcccttta
      601 tcgtccgcgc cgtgcagccg gtgttggagg aattatcggg cgaatatgag gaagcggcgg
      661 cgactttggg cgcaaaccgc tttacgacgt tccgccgcgt gctgctgccg gaaatcacgc
      721 cggcactctt gactggcgcg ggaatgatgt tcgcgcgggc aacgggggaa tacggctcgg
      781 tgatttttat cgcgggcaat attccgatgg tttctgaaat cctgccgctg attattacgg
      841 gcaagctgga acagttcgac gtacagggcg cgtcggcggt ggcgttgttt atgctgctgg
      901 tttcgtttgt gattctgttt gcgctgaacg tgatgcagtg ggcgttgggc aggcgttcgg
      961 gcgcgaaggg ttgaggtcgt ctgaaatacc tgttaccgtc attcccgcgc aggcgggaat
     1021 ccattggtga atttcggctg ccttatttat tttctgtttt cctgttgccc tgtggtggat
     1081 tcccgcctgc gcgggaatga cggtagctag acgtttttat tcccttaatc aataaaaggt
     1141 tgtctgaaaa cgaatccgct cccaaaaaca cagtttttca gacgacctcc aaacatttta
     1201 aaaccaacca gagaacacca ccgccatgaa accctattcc gccaatccca acctgaccga
     1261 accgcgtcgg ctgcgcgtgt tgctgattgc cgccgcgctg ggctttctgc tgctgatgct
     1321 ggtcgtgccg ctcgtcgccg tattttacga agccttaaaa ggcggttggg atttgtacct
     1381 gaaatcctta aacgatcccg aagcgtggtc tgccatcaaa ttgacgctga ttaccgcgct
     1441 gattgtcgtc cccgtcaatg ccgtcttggg cgtggcgatg gcgtggctgc tgacccgttt
     1501 tgattttcgc ggcaagcagt tgctgactac cctgctcgat ttgccgtttt ccgtatcgcc
     1561 cgtggtggcc ggtttaatgt tcgtcttatt gttcggcgcg cacacggcat tgggtggctg
     1621 gctcgaagcg caaggcatac agattatctt cgccatcccc ggcattattc tggcgacgct
     1681 gttcgttacc ttcccctttg tcgcgcgcga aatcatcccg ctgatgcagg ctcagggcga
     1741 cagcgaagaa caggcggcat tgatactcgg cgcaagcggc tggcagatgt tttggcgcgt
     1801 taccctgccc aacatcaaat gggcgttact ctacggcatc atcctcacca acgcccgcgc
     1861 gatgggcgag ttcggcgcgg tcagcgtggt atcgggacac atacgcggcg aaaccaacac
     1921 cgtcccgctt ttggtcgaaa tcttctacaa cgaatacaac ttcaccggcg cattcgccct
     1981 ctccggcgta ttggcacttt tggcactggc gacgctggcg gtgcagaaca tcatcaccaa
     2041 attacaagac aaaaaactcg ccgccgccga aaggaacgca gtatgagtat caccatccaa
     2101 aacttaaaca aacacttcgg caattttcac gcgctgaaaa acatcaacct caacgtcccc
     2161 accggcaaac tcgtttccct gctcggcccg tccggctgcg gcaaaaccac gcttttacgc
     2221 attatcgccg gactggaaaa cgccgacggc ggcaagattc tgtttgatgg gcaagacgta
     2281 accgccaaac acgtccgcga gcgcaaagtc ggcttcgtgt tccaacacta cgccctcttc
     2341 cgccacatga acgtgtttga caacgtcgct ttcggtttga ccgtattgcc caagtccgaa
     2401 cgcccgtcca aagaacaaat ctgcactaaa gtcgaagaat tgctgaaact cgtacaactc
     2461 tcgcatttgg caaaatccta tccgcaccaa ctctccggcg ggcaacgcca gcgcatcgcc
     2521 ctcgcccgtg cgcttgcggt cgaaccgaaa ctcctgcttt tggacgaacc cttcggcgcg
     2581 ttggacgcca aagtacgcaa agaattacgc acctggctgc gcgatatcca tcacaacctg
     2641 ggtgtaacca gcattctggt tacgcacgac caagaagaag ccctcgaagt ttccgacgaa
     2701 atcgtcgtga tgaaccacgg caaaatcgaa caaaccggca gcgccgaagc tatttaccgc
     2761 aaacccgaaa atgccttcgt taccgagttc ctcggcgaaa ccgacgcttt tgaaggacgc
     2821 atcgaaaaag gcttctggca ttataacggc ttcgcgtgga aattggacgc acaatacaaa
     2881 tggcaggaac aaaccgccac cggctatatc cgcccgcacg aatggcagat cgccgccgaa
     2941 cacgaaacac cgatgatttg tgccgaaatc gaaaaagtcc acgccgtcgg ggcattgacg
     3001 catattttgg tgaaacacgg caaacaagac gtgcatatca cgctggctgg cagcgatgcc
     3061 gcgcgttacc caatcgccga aggcaaagaa ttgaagctga ttccgaaaca ggtttatgtc
     3121 ttctctcaaa acgaactgat tgaatattcg atttaaccat gaaagcgcaa tgccgtctga
     3181 aaggctttca gacggcattg tgctttcaag cgtcaggcaa gaaacagctt gtacgcggca
     3241 ttttgcgttt cctcgtgata gctgtatccc agactttcca agaaaccgtc aaatgcggcg
     3301 gcatcgtgcg gcggcacatc gataccgacc aaaatccgcc cgtaatccgc accgtggttg
     3361 cggtaatgga agagcgtaat gttccaaccg ccctgcatat ggttcaaaaa acgcgccaac
     3421 gcccccggac gctccggaaa ctcaaaactg accaaacgct cgttttctac tttgtccgtc
     3481 cgccctccaa ccatataacg gatatggatt ttggcaatct catcatcagt caggtcgaca
     3541 ttgggcaatc ccgcctcatc caaccggctg ccgataaccg ccaaatcctg cgggcctgcc
     3601 gcttgaagtc cgacaaagat atgcgctttt tcatcgtctc cgtagcggta gttgaactcg
     3661 gtaatattcc tatttcccaa tatattgaca aacttaagga agctgccgcg ttcttcgggg
     3721 atggtaacgg caaaaatacc ttcgttgccc tcgcccaatt cactacgctc cgacacatgg
     3781 cgcaaacggt gaaaattcat attcgcaccg ctggtaacgg caatcagggt ttggttttcc
     3841 gcgccttctc gggcgatata ggctttcaga cccgccaacg ccaacgcgcc cgccggctcg
     3901 gtaatgctgc gcgtgtcatc gaaaatatcc ttgaccgcgc cgcaaaccgc atcggtatcg
     3961 actgtaatga tttcatccaa aagttctttg cagaggcgga aggtttcgtc tccgacaact
     4021 ttgaccgcag tgccgtctga aaacagcccg acatctttca aatggacgat ttcacccgct
     4081 tcgaccgact gcttcataca gcaggaatcg ttggtctgaa cgccgataac tttgatttcg
     4141 gggcggacct gcttgataaa tgccgccacg cccgccgcca aaccgccacc gcctatcggt
     4201 acgaatacgg cgcggattgg atcgggatgc tggctgacaa tttccatccc caccgtcccc
     4261 tgtcccgcaa tcacatcagg atcatcaaac ggcgcgatat aggttaaccc ttctttttcc
     4321 gccaactcca tcgcataatc gtaggcatcg ttgtatgaaa cgccccgcaa aaccacctcg
     4381 ccgccatggc ttttaaccgc atccactttg attttcggcg tagtttccgg cataacgata
     4441 acggcacggc aacccaaacg ctgtgcggac aatgccacgc cttgagcatg attgcccgcg
     4501 cttgccgcaa tcacgccgca agcgagcgca tctttcggca acttggacat tttgttgtac
     4561 gcgccgcgta ttttgaacga aaaaaccggt tgcaaatctt cgcgtttcaa aaggatgttg
     4621 tttttcaaac gtacagaaag gctgcgtgcc ggttccaaag gcgtttcgac cgcgacatca
     4681 tagacagatg ccgtcaggat gcggatgagg taattggaat aaggaagggg cgtgttcata
     4741 attcaatatg ggataatcgg tttattaaaa tcgcaaaacc caaaaccata cgcccaagac
     4801 ggcgcgaaag caagaaaaat ccgcccgatc agacacccta agcgtataat cggcagactg
     4861 aaacacgcac acaattagaa tatttcatga cagcacataa aatcctgccc gtcctgcttt
     4921 ccatcatctt aggcgtttct cacgcaacgg ccgcatcgcc cgcgcccaac aaaccggcgg
     4981 tacacgccgc ccccacgttc caaacacccg aaaccctcac agcggcacac atcgttatcg
     5041 accttcaaag caaacagatt ttatccgcca aaaacatcaa tacccctgtc gaaccggcgg
     5101 cactaaccca actgatgacc gcatatctgg ttttcaaaaa catgaaatcg ggaaatatcc
     5161 gatctgaaga aaacttaaaa atacccgaat ccgcatgggc ttcagaagga agcagaatgt
     5221 ttgtacgtcc cggcgatacg gtcagcaccg acaaactctt aaaaggcatg attgcactat
     5281 ccgcaaacga tgccgcccta acccttgccg gccggctggg caacggctcg attgaaaatt
     5341 ttgtgcaaca aatgaacaaa gaagcccgac gcttgggcat gaagaacact gtattcaaaa
     5401 atccgacagg cttgagtaga gaaggacagg tttccaccgc caaagacctc gcccagctgt
     5461 ctgaagcatt gatgcgcgac tttccggaat attacccgct gttttccatc aaatctttca
     5521 aattcaaaaa tatagagcaa aacaaccgca atatcctttt atatagggac aacaatgtaa
     5581 acggtctgaa agccggacac acagaaagcg gcggctacaa ccttgccgtg tcatactccg
     5641 gcaacggcag gcacatcctt gtcatcacat tgggttcgga atcggcggaa acacgcgcat
     5701 cagacaacag caagctgctg aactgggcat tgcaggcctt cgatacgccc aaaatatatc
     5761 cgaaaggcaa aaccgttgcc caaatccaaa tttccggagg cagcaaaaaa accgtccgcg
     5821 caggcttcct caaagaagcc tacatcactc tgccacataa ggaagcgaaa atggcagaac
     5881 agattttgga aaccatacag ccgattcccg ccccggtaaa aaaagggcaa attttaggaa
     5941 aaatcaaaat cagacaaaac ggatacacca ttgccgaaaa agaaatcgtc gcactggaaa
     6001 atgtaaaaaa aagaagccgg tggcaaaggc tttgggcgcg tctgacaggg cagtaatctg
     6061 ctatttcaaa tatcccgttt ttccaacaaa taaagaaatg ccgtctgaaa cacggttcag
     6121 acggcataaa acaacagggc ggtacgtatt gcatacgcgc cgccctgctg ctgaaatcaa
     6181 ttagcgtttc ttaccggtaa cggtagcaac agccagattt tcgttacgtt tcagggaaac
     6241 gctttctaca ccttcaggca gtttgatgtc tgacaagtgc agaatgtcgc cggcaaccac
     6301 ttcagcacaa tccaaatcca agaaagcagg gatgttggca ggcaaagcaa ctacttcaac
     6361 agaagtgttt aacagagata cgcggccgcc ttgcagtttg accgcttggg aattttcagc
     6421 gttaacgatg tgcaggggaa cgcggatgcg tacgggttgg tctgctttca cagcttggaa
     6481 gtcgatgtgt tgaacttcgc ggcggaacgg gtgcatttgg aaatcgcgga cgataacgtc
     6541 tttggtttca ccgttcagag acaacttaat caacgcagta tggaaagatt ctttttccaa
     6601 tgcgtagaat acggttttgt gatccacagc gattgcaaca ggctcttgac cttcaccgta
     6661 cagaatgccg gggatttggc cttcgcgacg caggcggcgg ctcgcaccag tgccttgtgc
     6721 ttcacgaaca gaggcttgaa tttcataagt catgttaaat actccaagtt aggtaaaatc
     6781 gccgtcatcg gccgcgacca gcttaagacg gcttcgggct tatggcagca acatgctgcc
     6841 tgtcatcact tcttcattga aaagatatga gacggattct tcattgctaa tgcggcggac
     6901 ggtttcggcc aacagaccgg caatcgttac ctgacggata cggtcgcagt ttttagccgc
     6961 ttcagacaaa ggaatggtat cggttacgac cacctggtcg atttcggatg aggcgatacg
     7021 gctgaccgcc tctccggaga atacggcgtg gctggcatag gctagaacac gttcagcccc
     7081 ccgctctttc agggcgacgg cggctttgca cagcgtattt gcagtgtcaa tcatatcgtc
     7141 cacaatcaga caggttctac cttgaatatc gccgatgatg ttcatgactt ccgccacatt
     7201 ggctttcggg cggcgtttgt cgatgattgc caagtcggca ttcagggatt ttgccacggc
     7261 gcgggcgcgg acgacaccgc cgatgtccgg gctgacgacg gtcagatttt caatccgctg
     7321 ttgtttgatg tcgttcaaca gaatcggggt ggcataaata ttgtccaccg gaatatcgaa
     7381 gaaaccttga atctggtcgg catgcaaatc gacagtcaaa acacggtcga tccctgccga
     7441 atacagcata tttgccacca gtttggcaga aatcggaacg cggacggaac gcggacggcg
     7501 gtcttggcgc gcatagccga aatacggaat ggctgtggta atacgacctg ccgaagcacg
     7561 cttcagtgca tccgccatcg tcaggatttc catcaggttg tcattggtcg gcgcacaggt
     7621 cggctgaagg atgaaaacat cgcgcccgcg tacgttttcc aacagttcga cggcaacttc
     7681 gccgtctgaa aacttggata cggaagcatt gcccaaagaa atgtccaaat gcctgacaac
     7741 acgttgtgcc aattcgggat tggcattgcc tgtaaatacc atcaaactgt cgtacgcagc
     7801 catattctca cctgatttta tgtttaactt ccgctcagaa aacacaatgc ttccctctgc
     7861 ttgtaccaag cccgacatta tacctgcaac atccgacaca aacaaaggca tttcaatatt
     7921 tttatttcta tgaaataaaa gcgtgtaagc aggcttacac gcttttattt ggctggggag
     7981 gaaggattcg aaccttcgca tgctggaatc aaaatccagt gtcttaaccg cttgacgact
     8041 ccccaacaat gtttatacgg acaacaaagg atgttttgaa agaccctctg ccaaatatgc
     8101 ctcgtacaaa cctgaaactt gtcggtatat attgtatgcg ctatccctat cttgacacgc
     8161 cgtgaataca cacgcaccag aacctgtcat taaggcaaat ccatatcggg acaattcgga
     8221 ataggctttc caaacttcag ggtattcttt aaatacaact gcctgcatat catttctaaa
     8281 cggttgcagg ttttggaaag tcggcattat gcttgaggcg gaatttcgtg tcaagccttc
     8341 gtgtgtgaaa atttttgcag tggaaacgtg gacgggcggt ttgacgatga cataccactg
     8401 tttcggaata tccattccta tcagtttttc acctatcccg cttgcaaaag cattttttcc
     8461 gaaaataaaa aatggtacgt ccgcacccaa agttgcgccc aagtcaatca gctgctgcgt
     8521 cgttcgggaa cactgccacc aacggttcaa caccagcaaa acggttgccg catccgagct
     8581 tccgccgccc aaacccgccc ctgtcgggat ttttttgtcc agccatattt ccacgccggc
     8641 ggggttgcgc gcatattttt gcagcaacga tgcggcacgg tagctcaaat cggcttcctg
     8701 cggcatgcca tcaaccggat tgtgcaggat gattttgccg tcgtccctcg gtttcaaata
     8761 tacggtatcc tgcaaatcta tcaagcagaa tatgctttcg atattgtgat aaccgtcttc
     8821 ccgcctgccg gtaatcctca aatcgagatt cagttttgca ggtgcgggaa acgcctgccg
     8881 tccgtccgca atattcatct gtccgcctta tctcgtgcgc gccgcacagc gttccggggt
     8941 ttcggtttca gacggaatac cgatttcggt gaaaaccagc ctgatgttca aatttccgtt
     9001 attcagttgc aacgttcgga cttgcccccc actgtcggcg gttctgccga cagtccaacc
     9061 gtattgttcc aatatgccgt ccggcaggat gcggtaaggc gcgcccgcca cacgcctgcc
     9121 atctgcccag atatgcagat attggattgg cagtttgaaa ccgaccagct gcctgctcaa
     9181 ttcttccgca ctttccgcct gatagacatt tcctttgccg tccactgcca atgcgccgtc
     9241 cctgtcttga cacaactgcc cgagcgtact gcccaaaggg gtattgatat tgatggtttc
     9301 cacgagcggt tggtatgtcc aatcgaaatt tgcatacgaa cctttccctt ccgctttcac
     9361 tgccaaccgc ccttctgctg caaaactgct gatgtgttcg gacggctgcc acaggttttc
     9421 gttattttga ggtaattgcg cacaagcggt caaaagcagg atgaccgatg cggatacggt
     9481 gtgtttcatc agaatttcct taacgggtgc catcctgccg gccggcgggt tcggcgtgcc
     9541 gtgcaaaacg cgtgcgaact gcgtgcggtt tgcccgaatg ccgcagcttc ccggcaaacc
     9601 ttatgccgtc tgaaaggatg gacctgcatt atttccgggg tttgcgggaa ggttggggca
     9661 atgcgatgcc gtgacgtttg agcgtttccc gccatatttt cttgtctccc gtaaggtgtg
     9721 ccgcctgcgt ccatacgtca accgcctgat cgcgttcgcc caatgcccac aacacttcgc
     9781 ccaaatgggc ggcaacttcg ggctcggggt cgttttcaaa cgaataccgc agatacggca
     9841 gcgcgctttc cgcgtcgcct ttcaggtaat acgcccagcc tatgctgtcg ttgacagcgg
     9901 tatcgtccgg gttgatttgg tatgccgtct gaagcagggc gaagccttcg tccaaacgtt
     9961 tggaatcgga aagcaggctg tagcccagat tattcataat ctgagcgtta tcgggtgcaa
    10021 gcctgaacgc cctttcaaga tctgaaatca tttttttccg cttgccaagc cgatcgtaaa
    10081 caactgaccg ctgtaccaat gcctctgcct gtaactctgt attactgccg gcaggcggtt
    10141 tttcgataat cttgtccaac cccctcaaag cctcccgttt gtcgggcagc ttcgacaggg
    10201 cgaacatctg tattttggac aaattgtctg ccgtaaaata ccgcccctgc tgttcgggaa
    10261 gtttccgcac cctgccgatc tgccgcaaag ccgccctgcc gccgtccaac tcgacagccg
    10321 ccgcagccgc cagcacacct ttgtcgaaca ggtattccgg agcggacact tttttcaacc
    10381 actgcctgac tttggtgtaa tcccttcggt cggcatatat catcgccgcc gtcattgccg
    10441 ccctgccccg ctgttccccc gtccccctgc cgtatgcctt ttcggcgtag ccgtcgataa
    10501 cggaagcacc ttcttttcgg tttgccgcca atatcgctgc ctgaatatac aggtctgcat
    10561 tcggattgcg ttccaacagc acgttcaaac gcgcataggc atcatccagc ctgtgcaggg
    10621 aaaccagatt cataatttcc atttcctgcc agacggccga aaggttttgg gtgtctgtct
    10681 gctcgaaaaa gccgtcgagt atttcgggat atttgcgtgc agtcagacgc aacgtcatta
    10741 aagtgggggg caatatttcc gtatcgagct tcgccaaacg ctgcaaagct ccgattgcct
    10801 tttccttttc gcgtccctgt acgctgaaca ccacatcggc aaccgccgct tcgggcagat
    10861 gttcatattt caacgccgca cggcgaaccg ctttcgatgc tttttgcgcc aacccgtcct
    10921 gttgcacggc ggcttgtgcc aacaataaaa acaccctgcg gttctgtcct tcgtccgcct
    10981 gagccagcac ttcttccagt ccgtctagat gctgatttcc tctttccctc agcacgttcc
    11041 gcagccaccc cgcccgtttt tgcgccttac ccggtatagg ctcaatctgc cgccatttct
    11101 gataaatcat ttccgcctgt tcaaacgcgt tcagcgacac ggccatttcc aaggcgcgtt
    11161 cggcgacttc gggggatttt gtgcgttcca acatcagcat ataggttgcc agagccgttc
    11221 ccgcctgccc cttttgcaag gcggtttccc ctcccagcaa cgtaaatatc tgattaaccc
    11281 gctcgcccac tgccgcaagc cgtgcgcgtt cgtttttgat ttcttcctcg ctgtaacgct
    11341 gctgctttct gaaaaccttt ccgacttcct tcggcggctt cgcatccgcc gcgccggcgg
    11401 catacgcctg cccggcaagc agggctgccg cgagcacaga taaaatggtg aaacgggcgg
    11461 gtaacataat cttcctttat ccgacagccg tccgaacctt cagacggcat ataatcaggc
    11521 gtaactttat cacaagcaga atcgtttgta gatttgcgaa accccgttca aaaaaataaa
    11581 tgccgtctga aacgcaaatc cgcttcagac ggcattcccg acgcttgcgg tttaagggag
    11641 ttttatttcc aaattgtcaa tcaggcgcgt cgtccccaga cgggcggcgg ccaagaccac
    11701 cagtttctta tctcccgccc gcgccacttc gagcgtatcg gcgcggcgga tttcgacata
    11761 atcgaccacc cagcccgcag cggtcaaatg gtcggcagcc tgccgctcca aacctgcata
    11821 atccaaactg ccctgcgcca aggattcggc aacagccttt aattcgcggt acaggcgcgg
    11881 tgcttcgtcg cgttccgccg cactcaaata ctggttgcgg ctggagagtg ccaaaccgtc
    11941 ttccgcgcgc cccgtatcga caggcactat ttcaacatca aaattcaaat cctcggtcaa
    12001 acctttaatc acggcaagct gctgatagtc ttttttgccg aaacaggcaa catccggcgc
    12061 gacaatattg aacagcttgg acaccaccgt cgccaccccg cggaaatgtc ccggacgaaa
    12121 cttgccgcac aactcatttt gcagattggg cggttcgacg ttgtaacgct gttccacgtt
    12181 cggatagagt tctttctcat cgggcgcgaa aacaacggca acaccctcgg cttccagctt
    12241 gtccgcatcc tgttgcaaag tacgcggata tttgtcgaaa tcctcgccct gaccgaattg
    12301 caggcggttg acgaatatgc tgacaacaac gttgtcggcg cgttttttgg cttcgcgaac
    12361 gagggcaaga tgcccttcgt gcagattgcc catggtcggc acaaatgcca ccgttcccgc
    12421 atttttacgc cacgcgcgca gttcttgaat ggtatgtatg atttgcataa cggtaatcct
    12481 tatccttcgg gcttcctgcc cgacaaaacg cgccgattat acgcgccgcg cacggcaaaa
    12541 caaaatgccg tctgaaacgg ctttcagacg gcatcggcag caaaccttgt tcagtctgca
    12601 aaaatatgtt ccgcagcagg gaaggttttg gctttgactt cggcaacata cgcccgaacc
    12661 gccgcctgaa tgctgctttg cccctgcata aagtttttga cgaatttcac cgtcttaccc
    12721 gggaaaatgc cgagcatatc gtgcatcacc aaaacctgcc cgtcgcaatc gacacccgcg
    12781 ccgatgccga tggtcggaca ggaaacggat tcagttacct tttttgccag ttccgcagga
    12841 acacactcca tcagcacgac cgccgccccc gcatcatcat gcgccttggc atcgttaagc
    12901 aacgcctgcg ccttgccgcc gcgcccctga accttgtatc cgccgaaggc aaacacggat
    12961 tgcggggtca gaccgatgtg ggcacagacc ggaataccgc gcatttgcag aaattcggtc
    13021 gtttccgcca tccacacacc gccttcgagt ttgaccatat gcgcgccggc agccatcagt
    13081 tcggcggcgg cggcaaacgc ctgctcctta ctctgctgat atgcaccaaa cggcaaatcg
    13141 ctgacaatca tcgcattttt tgcaccgcgt gctacacatt cggtgtgata acacatatcg
    13201 cgcaggctga cgggcagcgt cgactgccgc ccttgaaccg ccattcccaa agaatcccca
    13261 accagcagca catccacgcc ggcatcgtcc atcagcgcgg caaaactgga ttcgtaagcg
    13321 gtcagcatag cgattttctc gcccgccgcc ttcatttttt gcagtgtgtt cacagtaatc
    13381 atcagatatt gttaccccgc ccttttcaga cggccttttc agtttgaaac gggctattat
    13441 agtgaaatgc ccgcagccct gccaccgacc gtgccgcaaa tgcaaaacag cccgactgtt
    13501 ttacacaatc ggactgtcaa atctggtgcc ggcaccaaga gtcgaactcg ggaccccctg
    13561 attacaagtc aggtgctcta ccaactgagc tataccggca aagaaggcga attatgcagg
    13621 caacttcaca ctttggcaag gaatttatcc gaaagccccg gcaaatccga ataagtaatt
    13681 tatttgaaaa gaaattaatt tgaagcagga caagcatcgg cattctgata aaatatccgc
    13741 ctttcaaacc gaccgttcac accgatggca agacatccct accgccgcct gcgtcctgca
    13801 aaatccggct ttcccgaagt cggcatttcc gaagaaggca atatccgttc gcttcacttg
    13861 ggcagcgaca ccgttcaaag ctcaatgaac ctcgaccacc cgtccgagct ggtactctct
    13921 tacagccgcg cgatgatggg ctggctgctg tttaccgacg cacttccgca gcatatcacc
    13981 caaatcggct tgggcggcgg ctcgtttgca cgctggatag acacctacct gcccgacacg
    14041 cgccaaaccg ccgtggacat caatcctcag gtcatcgcca ttgcccgcaa cctgtttgag
    14101 ttgcctttcg agggcgagaa atttgaaatt attgaagcag acggtgcaga atatatcaaa
    14161 gtcttccgcc acaacaccga tgtgattttg gtggacgggt tcgacggcga acaaatcatc
    14221 gatgcgctgg ttgaagaacc gtttttccga gactgccgaa acgcactctc ttcagacggc
    14281 atattcgtaa ccaactggtg gagcggcgac aaacgctacc aacgcttcat cgaacggttg
    14341 ttgagcgttt ttgaagggcg cgtcttggaa cttcctgccg aaagccacgg caatgtcgcg
    14401 gtaatggcct tccaaagcag ccccaaagag caaaacatag acaaactcaa aaaacgtgcc
    14461 gacaaactga gcaacgcata cggattggac ttccaccgta tgcttgccgg cctgaaagcg
    14521 tccaacccca acaacggcaa gcatttccac ctttaagcaa ctatcttcac ggctgcattg
    14581 gaacatgcgg aaaatcaaga ggaaatcatt atgctgaaac ccgaaaccat acacatatcc
    14641 ggtcctgccg gcattttaga aaccatccat atcccgtccg aacaagtacc ggcacgcggt
    14701 gttgccgtca tcaatcatcc caaccccctc cagggcggaa caaacaccaa caaagttatc
    14761 caaactgccg ccaaagcctt aagcaaactc ggcttccact gctacctacc caaccttcgc
    14821 ggcgtaggcg gcagcgaagg cacacacgat tacggacgcg gcgaaacgca agactgcctc
    14881 gccgtcatcg actatgcccg tgcccaacat cccgaagccc ccgaatttgc cttatccggc
    14941 ttctccttcg gcggttatgt cgccacattt gccgcacaag cgcgcatacc cgatttattg
    15001 ctgctcatcg gcgcggcagt ctgccactat accggccgcc ccgagccgtc cgccgttccc
    15061 aatgttgcca aaacgctgat gatacacggc gcggaagacg aagtcgtcga aatcgggaaa
    15121 gcactgaaat gggcggaacc gcaagatttg cccgtcatta ccatcgccgg ttccacgcat
    15181 ttctttcacg gcaaactcat cgtcctgcgc gacaccatcc tccgcttcgc gcccgtatgc
    15241 ctgaacggat aaaacccctt tcagacggca tcgataatgt aaaacccgta tcggcggcat
    15301 ccgccgatac gggtttgcgt tccctctcat tataggcaaa atccgctgca aaacaccctt
    15361 tcccgacccg acaaaggatc tgcaaacgca atcttttttg ccaatagctt caaaggtttc
    15421 cgataatcct cgctgcccgc ttcagacggc acgggataga gcgcgtcatt caacagcggc
    15481 atacccaaac ccatcatatg cacgcgcaac tggtgtttct tgcccgtatg cggcgtaagg
    15541 cggtaaaggc tgaattcccc cctgttttca atcagttcga ccgtcgtatg tgcgtttggt
    15601 tcgccttccg cctcttgcgt cgtaaaaaat ttctcacccc tcaccaaacg cgaaaccaca
    15661 tcgagcggat acggcaaatc cgtccttgtc ggcgcaagcg cctcatacgt tttccatacc
    15721 gttttgtttt gaaacatcgt ctgataggct ccgcgcgtgg caggattatg cgacagcagc
    15781 atcacgcctg ccgtatcctt gtccaagcgg tgcagcggcg taatgtcctc aacattcaaa
    15841 tgctgcaatt caggccgcaa acgcaggcgc gtgagcaggg tttcccgcaa aaacctgccg
    15901 ctggggatga cgggcagaaa atgcggcttg tccaccacaa tcaaatgctc atcaatatgc
    15961 aaaatctttt cttcaaacgg aatacgcggc tcatcctcac tgctggtttc ccgataataa
    16021 aacatcacct tacccggctc gaacaaagta tgttcgtcca acgtcgcacc atccgaaccg
    16081 accacaaaac cgctgttcaa ccgcctgcgc caatcgtccg cgcccacaaa aggaaagcgg
    16141 atgcacagaa aatgcagcag cggcagcccg taaaactgct tttcatgcgg cagcaccaaa
    16201 taactgggtt tgacaccgtt caacagagga agaggattat tgcgtttttt catgcggcgg
    16261 attgtaaccg tt
//
LOCUS       DAXIFS010000026        15659 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.026, whole genome shotgun sequence.
ACCESSION   DAXIFS010000026 DAXIFS010000000
VERSION     DAXIFS010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15659
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.026"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..376
                     /locus_tag="ACFOCA_000652"
     CDS             <1..376
                     /locus_tag="ACFOCA_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6987407.1"
                     /translation="MGLLGIAYRYGGTSISTGFDCSGFMQHIFKRAMGINLPRTSAEQ
                     ARMGTPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHK
                     YWSGKYAFARRVKKNDPSRFLN"
     gene            395..613
                     /locus_tag="ACFOCA_000653"
     CDS             395..613
                     /locus_tag="ACFOCA_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987408.1"
                     /translation="MSMPEMPKWYDDDGQIVSCTEKVKVMSENMAELYQTAQDAFEDA
                     LLMGCGERQLRDYLLALIEGLENPYRKV"
     gene            758..1102
                     /locus_tag="ACFOCA_000654"
     CDS             758..1102
                     /locus_tag="ACFOCA_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HFC6987409.1"
                     /translation="MNIIRALLIILGCLAAGETAVFLAGIKLPDSIVGMGVLFALLQA
                     GWVKTSWLQQLTDALMANLTLFLVPPCVAVISYLDLIADDWFSILVSASASTLCVLLV
                     TGKVHRWIRSII"
     gene            1102..1794
                     /locus_tag="ACFOCA_000655"
     CDS             1102..1794
                     /locus_tag="ACFOCA_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HFC6987410.1"
                     /translation="MNEILRQPSVLLFLTLAVYALAIIVRTRTGNIFCNPVLVSTIVL
                     IAYLKILDIDYAVYHNAAQFIDFWLKPAVIVLAVPLYQNRRKIFNQWLPVIVSQLAGS
                     VTGIVTGMYFAKWLGAEREVVLSLASKSVTNPIAIEITRSIGGIPAITAATVIIAGLV
                     GQIAGYKMLKNTVVMPSSVGMSLGTASHAMGIAASLERSRRMAAYAGLGLTFNGVLTA
                     LIAPLLIPVLGF"
     gene            1861..3081
                     /gene="argJ"
                     /locus_tag="ACFOCA_000656"
     CDS             1861..3081
                     /gene="argJ"
                     /locus_tag="ACFOCA_000656"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HFC6987411.1"
                     /translation="MAVNLTEKTAEQLPDIDGIALYTAQAGVKKPGHTDLTLIAVAAG
                     STVGAVFTTNRFCAAPVHIAKSHLFDEDGVRALIINTGNANAGTGAQGRIDALAVCAA
                     AARQIGCKPNQVLPFSTGVILEPLPADKIIAALPKMQPAFWNEAARAIMTTDTVPKAA
                     SREGKVGDKHTVRATGIAKGSGMIHPNMATMLGFIATDAKVSQPVLQLMTQEIADETF
                     NTITVDGDTSTNDSFVIIATGKNSQSEIDNIADPRYAQLKELLCSLALELAQAIVRDG
                     EGATKFITVRVENAKTRDEARQAAYAVARSPLVKTAFFASDPNLGRLLAAIGYAGVVD
                     LDTDLVEMYLDDILVAEHGGRAASYTEAQGQAVMSKAEITVRIKLHRGQSAATVYTCD
                     LSHGYVSINADYRS"
     gene            3141..4550
                     /locus_tag="ACFOCA_000657"
     CDS             3141..4550
                     /locus_tag="ACFOCA_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6987412.1"
                     /translation="MTSTFPRRLARKIRQTRRLSRKSIAFLFLLAGSALVALTALFFA
                     HLADFALELNAKLVQQYPWFAWVALPLGLPLIAWLTRKFAPFTAGSGIPQVIASLSLP
                     YGAQKTRLIRLGQTLLKIPLTFLGMLFGVSIGREGPSVQVGAAVMGAWGAWCKKHGLA
                     FKGMQENDLMAAGAAGGLAAAFNAPLAGVIFAIEELGRGIMLRWERQILLGVLASGFI
                     QVAIQGNNPYFSGFNGGVLEHIFLWVALSGLVCGAAGGLFGRLLYRGAAAFAPRKIRG
                     FIRNRPLLLAALMGLLLALLGTFYQGKTYGTGYHEAAQALHGIYEAPFGLAAAKWLAT
                     VFSYWAGVPGGIFTPSLTIGAVLGEHIAAIADISQGANIIVLICMAAFLAGATQSPIT
                     SAVVVMEMTGGQSLLFWMLIACIFASQVSRQFSPRPFYHASGMRFRQRVLQETAAQTG
                     NAPARPQTANSKTGMPSEN"
     gene            4739..6130
                     /gene="hrpA"
                     /locus_tag="ACFOCA_000658"
     CDS             4739..6130
                     /gene="hrpA"
                     /locus_tag="ACFOCA_000658"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HFC6987413.1"
                     /translation="MFPDFSQTLSKDRHFLQSAFKNPNKYGGLSKVEEKYRKSHEIFL
                     KRLAALPKPEFDNTLPVHEKLDEIKKTVAEHQVTIICGETGSGKTTQLPKICLELGRG
                     VAGLIGHTQPRRLAARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGIL
                     LAETQTDRYLAAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAER
                     FSRHFNGAPVLEVSGRTYPVEILYRPLTGKDEDDAEVELTDAIVDAADELARHGEGDI
                     LVFLPGEREIRETAEALRKSTLRRNDEILPLFARLSHAEQHKIFHPSGAKRRIVLATN
                     VAETSLTVPGIKYVIDTGLARVKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGV
                     CIRLFSEEDFNSRPEFTDPEIVRSNLAAVILRMASLNLGDVAAFPFLEMPDSRYINDG
                     FQVLLELGAVEAV"
     gene            6231..7358
                     /locus_tag="ACFOCA_000659"
     CDS             6231..7358
                     /locus_tag="ACFOCA_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HFC6987414.1"
                     /translation="MKHLLIDFENVQPQNLDKLPTENTHIWLFIGVLHKMLPISLVQS
                     LLRFGERVHLVQLQKTGKNALDFYLSYYLGQITATDPNAQIGILSRDGGYDVLVEHIL
                     KNHQAKGIVRLANIDEVQHQKITTEPPSALLENTPQPETTLKPQQPLTSYFQAALTAL
                     RRPDAFRPCRLHNLRQNLRKHILSDLFKEKTDEECEITTANVINKLKAQNFISIDEQE
                     TVSYHLSDNDLLQRIQRHILSQRPKTYADFQAVVQNRADALHLTVGTNDIQSFARHLR
                     DQNLIRQNNGKIEYAPFTEPKPQPTPKQPKKTAWEPDEIIWKKVIAALSLKNRPNKTK
                     TLRNTIQALTKSNAQETDKLLQHLQDTQVLRIDGTKIVYIK"
     gene            7536..9113
                     /gene="lpt3"
                     /locus_tag="ACFOCA_000660"
     CDS             7536..9113
                     /gene="lpt3"
                     /locus_tag="ACFOCA_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HFC6987415.1"
                     /translation="MMKKSLFVLFLYSSLLTASEIAYRFVFGIETLPAAKMAETFALT
                     FVIAALYLFARYKATRLLIAVFFAFSIIANNVHYAVYQSWMTGINYWLMLKEITEVGG
                     AGASMLDKLWLPALWGMLEVMLFCSLAKFRRKTHFSADILFAFLMLMIFVRSFDTKQE
                     HGISPKPTYSRIKANYFSFGYFVGRVLPYQLFDLSKIPVFKQSAPSKIGQGSVQNIVL
                     IMGESESAAHLKLFGYGRETSPFLTQLSQADFKPIVKQSYSAGFMTAVSLPSFFNVIP
                     HANGLEQISGGDTNMFRLAKEQGYETYFYSAQAENQMAILNLIGKKWIDHLIQPTQLG
                     YGNGDNMPDEKLLPLFDKINLQQGRHFIVLHQRGSHAPYGALLQPQDKVFGEADIVDK
                     YDNTIHKTDQMIQTVFEQLQKQPDGNWLFAYTSDHGQYVRQDIYNQGTVQPDSYLVPL
                     VLYSPDKAVQQAANQAFAPCEIAFHQQLSTFLIHTLGYDMPVSGCREGSVTGNLITGD
                     AGSLNIRDGKAEYVYPQ"
     gene            9179..12478
                     /locus_tag="ACFOCA_000661"
     CDS             9179..12478
                     /locus_tag="ACFOCA_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HFC6987416.1"
                     /translation="MQNMKNQVRGSGMDARSNPANVSDGLQNSSGHIGTNTRYRLTKL
                     GEQMARLPIDPKIARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAAAKAHER
                     FTDKQSDFLAYLNIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQT
                     AIEMGLTTKEAAFRRLSEIKQLTSSENQGDQDLSAKRKQKQLDKKQHRAQIRAAKEAG
                     YEQIHRALLTGLIANVGMKSPDGNDYTGARGSRFHLFPASALFKAKPKWVMAAELVET
                     TKLYARDVAVIQPEWIEQEAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRP
                     VPYGKVAPEEAREIFIRSALVAQECDLKADFFVHNKKLIKEITELEHKSRKQDVLVDD
                     EALFAFYNERLPEMAWKDAQGSVWGSEDSVRIIESDKAERSSENERNEFRKNKRNGSR
                     QNENHGNTVGWVENPTSAATAKTVGFDNPTYATQQPTPSPAREGRGEGKTVAAQTNFS
                     ATAANPLPQEREQSAAASAVSNDLHPANPQQTAPSPVGEGWGEGKTVATQTNFSATTA
                     NPLPNPLPQEGEQSAAASAVSNDPQPQKQPAPQKDRLKPLPLADIRTFQAWLKTAERE
                     NPRLLFLSRDDLMQHAAAHITEEQFPKFWQTADGKFELSYRFEPHHPLDGVTLTLPLT
                     VLNRISPAALEWLVPGMLREKIQLLIKALPKQIRRICVPVPEFITQFLSQNPDRNAPI
                     LPQLAQAIAKTAGDIRIFEQINQDEWAAFRLPEHCYFNLRIIDDGGQELAIGRDLIQI
                     QQQLGQAAAVTFRDNTQEFERDNVTTWDIGILPESIKFARGKQQLTGYLGLQKEKDGR
                     IALRLFDTIEAAEQAHRQGVIELMKLQLKEQVKDLNKGIQGFTQAAMLLKHINADTLR
                     DDLTQAVCDRAFIGEDELPRNEKAFKEQIKRARSRLPAVKEALSRYLQETAAAYAELN
                     SKLGKHPLTHLLRQRLQTLLAAGFATRTPWAQWPRLPIYLKAMTLRLEKYSSNPARDA
                     AREADIQELEQMWQEKTDSLIKQGLPISDGLAAFKWMIEELRVSLFAQELKTPYPVSV
                     KRLLKMWEDLN"
     gene            complement(12501..12923)
                     /locus_tag="ACFOCA_000662"
     CDS             complement(12501..12923)
                     /locus_tag="ACFOCA_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HFC6987417.1"
                     /translation="MTDIFTTSKRSFVMSKIHSKETKPEILVRKFLFSQGFRYRKNDK
                     RYAGKPDIVLPKYKTVVFIHGCFWYGHSCNKGHIPKSNTDFWLEKITKNCERDIKNET
                     ELEKIGFKVIVVWECELKNKAIGRERLNRLVREIKDAV"
     gene            complement(12927..14573)
                     /locus_tag="ACFOCA_000663"
     CDS             complement(12927..14573)
                     /locus_tag="ACFOCA_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02391 family protein"
                     /protein_id="HFC6987418.1"
                     /translation="MSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATE
                     VEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLG
                     KLALFGLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVEPNTENGTTIT
                     LTELTKKQGYPLDNYVEHLSRLFDFPAQDFKIKVSLNGSEPKIIDGNLKYDLVTPQFE
                     WEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEF
                     FTDSESSHFYSYLTGWLSIDFIDNDDEDLIATDRTSLDWKHPKTSKLRVFLGEIVRAI
                     GQDWRKRRKKEKDDEVKGESGVDIENWKNKLPEKEREPVEVILNRLEDSELTNKEQAE
                     VISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFENKVQKQTG
                     LHSIDGRELIEQAFGSKNSILLLTNNKTKAEQNLEDGLEQLACGTWTGFRNPVQHELR
                     ANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRSKVVSSK"
     gene            complement(14587..15642)
                     /locus_tag="ACFOCA_000664"
     CDS             complement(14587..15642)
                     /locus_tag="ACFOCA_000664"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6987419.1"
                     /translation="MKNSKLKAVDFFCGGGGMSYGMQSAGIQVLAGIDYEPSCKETYE
                     ANINAKFIQADVFELQPETLEKELGLKKNDDDLILIGCSPCQYWSVIQTDKRKSEKSK
                     SLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLLEEKGFTVHFGIHNTAD
                     YGIPQSRKRFTLIANRITKEKLEPVKYSGKRLTVRDVLGMENGFPKIIAGHQDETDFM
                     HSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPA
                     PTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVP
                     PMYAEKIGRAIVDNIEC"
BASE COUNT         3965 a         4527 c         3540 g         3627 t
ORIGIN      
        1 gatgggactt ttgggtattg cctaccgcta cggcggcaca tcgatttcta ccggttttga
       61 ctgcagcggc ttcatgcagc acatcttcaa acgcgccatg ggcatcaacc tgccgcgcac
      121 gtcggcagaa caggcgcgga tgggtacgcc ggttgcccga agcgaattgc agcccgggga
      181 tatggtgttt ttccgcacgc tcggcggcag ccgcatttcc catgtcggac tttatatcgg
      241 caacaaccgc ttcatccacg cgccgcgcac ggggaaaaat atcgaaatca ccagcctgag
      301 ccacaaatat tggagcggca aatacgcgtt cgcccgccgg gtcaagaaaa acgacccgtc
      361 ccgctttctg aactgatttc ccaaggaata cgcaatgagt atgcccgaaa tgcccaaatg
      421 gtacgacgat gacggacaga tcgtgtcctg taccgaaaag gtcaaagtga tgtccgaaaa
      481 tatggccgag ctgtatcaga cggcacaaga cgcgtttgaa gacgcgctgc tgatgggttg
      541 cggcgaacgt cagttgcgcg attacctgct cgcgctgatt gaaggtttgg aaaatcccta
      601 ccgcaaagtc tgaacacgcc ccggttgctg cggcacggtt tatccgtgcc gtttttgcgt
      661 ttgtgcgcgg cttcggcttt tcagacggca tatttgacgt tatgattaaa cagttaacaa
      721 gatttatcac aacgccgtca aaagacagac acacaacatg aacatcatcc gcgcgctcct
      781 catcatcctc ggctgcctcg ccgccggcga aaccgccgtt ttcctagcag gcatcaaact
      841 gcccgacagc atcgtcggca tgggcgtgct gtttgcgctt ttgcaggcag gttgggtcaa
      901 aacgtcttgg ctgcaacagc ttaccgacgc gctgatggcg aatctgacgc tgtttctcgt
      961 gccgccctgc gtggcggtca tcagctattt ggatttgatt gccgacgatt ggttttcgat
     1021 actggtttcc gcctccgcca gcactttgtg cgtactgctg gttacaggca aggttcaccg
     1081 ctggatacgg agcattatct gatgaacgaa atcctcaggc agcccagcgt tctgcttttc
     1141 ctcacgcttg ccgtgtacgc gcttgcgatt atcgtgcgca cgcgcacggg caatatcttc
     1201 tgcaaccccg tactcgtcag cactatcgtg ctgattgcct acctgaaaat cctcgacatc
     1261 gattatgcgg tgtaccacaa cgccgcgcaa ttcattgatt tttggctgaa acccgccgtc
     1321 atcgtgcttg ccgtgccgct ctaccaaaac cgccgtaaaa tcttcaacca gtggctgccc
     1381 gtcatcgttt cacagcttgc gggcagcgtt acgggcattg ttacggggat gtattttgcc
     1441 aaatggctgg gcgcggaacg cgaagtcgtc ctctcgctcg cgtccaaatc tgttaccaac
     1501 cccatcgcca ttgaaatcac ccgctccatc ggcggcattc ccgccattac cgccgccacc
     1561 gtcatcattg ccggtctggt cggacagatt gccggttaca aaatgctgaa gaacacagtc
     1621 gtcatgccct cgtccgtggg tatgtcgctc ggcacggctt cgcacgcgat ggggattgcc
     1681 gcctcgctcg aacgcagccg ccgcatggcg gcatacgcgg gactggggct gacgttcaac
     1741 ggcgtactga ccgcgctgat tgcgccgctg ctcatccccg ttttgggatt ttgaacccgt
     1801 ttcagacggc atttcagccc atgctgtctg aacgccgaca cactcgcaag gagaaccgtt
     1861 atggctgtca acctgactga aaaaaccgcc gaacaactgc ccgacatcga cggcattgcc
     1921 ctctacaccg cccaagcagg cgtgaagaag cccgggcata ccgacctgac actgattgcc
     1981 gtagccgccg gcagcaccgt cggtgcagtc ttcacgacca accgtttctg tgccgcgccc
     2041 gtccacatcg ccaaatcgca ccttttcgac gaagacggcg tgcgcgccct catcatcaac
     2101 acgggcaacg ccaacgcggg tacgggcgca cagggcagaa tcgatgcttt ggcagtgtgt
     2161 gccgccgccg cccggcaaat cggctgcaaa ccgaaccagg tgctgccctt ctccaccggc
     2221 gtgattctcg aaccgctgcc cgcagacaaa atcatcgccg cgctgcccaa aatgcagcct
     2281 gccttctgga acgaagcggc acgcgccatc atgaccaccg acaccgtgcc caaagccgcc
     2341 tcgcgcgaag gcaaggtcgg cgacaaacac accgtccgcg ccacgggcat cgccaaaggc
     2401 tcgggcatga ttcatcccaa tatggcgacc atgctcggtt tcatcgccac cgatgccaaa
     2461 gtttcccaac ccgtcctcca actgatgacg caggaaatcg ccgacgaaac cttcaacacc
     2521 atcaccgttg acggcgacac cagcaccaac gacagcttcg tcatcatcgc caccggcaaa
     2581 aacagccaaa gcgaaatcga caacatcgcc gacccgcgtt acgcccaact caaagaattg
     2641 ttgtgcagcc tcgcgctcga actcgcccaa gccatcgtcc gcgacggcga aggtgcgacc
     2701 aagttcatca ccgtccgcgt cgaaaacgcc aaaacccgcg acgaagcccg ccaagccgcc
     2761 tacgccgtgg cacgttcgcc gctggtcaaa accgcctttt tcgcctccga ccccaacctc
     2821 ggcaggctgc tcgccgccat cggttatgcc ggcgttgtcg acctcgatac tgacctcgtg
     2881 gaaatgtatc tcgacgatat tttggttgcc gaacacggtg gacgcgccgc aagctacacc
     2941 gaagcacaag ggcaggcggt gatgtcgaag gccgaaatca ccgtccgcat caagctgcat
     3001 cgcggacaaa gtgccgccac cgtctatacc tgcgacctgt cgcacggata cgtttccatc
     3061 aacgccgact accgttcctg acccgacacg gcttcagacg gcatacataa aatgccgtct
     3121 gaaccgccgg acaacatgcc atgacctcca cattcccccg ccgcctcgcc cgcaaaatcc
     3181 gccaaacccg ccgcctgtcg cgcaaaagca tcgcctttct gttccttttg gcaggttcgg
     3241 cactcgtcgc cctgaccgcg ctgttttttg cccatcttgc cgattttgcg ctggaactga
     3301 acgccaaact ggttcaacaa tacccgtggt tcgcgtgggt cgcgcttcct ttgggtttgc
     3361 cgcttattgc gtggctcaca cgcaaattcg cccccttcac cgccggcagc ggcatcccgc
     3421 aggtcatcgc ctcactgtcg ctgccctacg gcgcacagaa aacgcggctg atccgcctcg
     3481 ggcagacgct gctgaagatt ccgctgacct ttttgggtat gctgttcggc gtgtccatcg
     3541 gacgcgaagg tccgtccgtg caggtcggcg cggcagtgat gggcgcgtgg ggcgcgtggt
     3601 gcaagaaaca cggcttggca ttcaaaggga tgcaggaaaa cgatttgatg gcggcgggcg
     3661 cggcgggcgg tttggcagcc gcgttcaacg cgccgctggc gggcgtgatt ttcgccattg
     3721 aggaactcgg gcgcggcatc atgttgcgct gggagaggca aattcttttg ggcgtgctcg
     3781 cctccggttt catacaggtc gccattcagg gcaacaaccc gtatttttcc ggcttcaacg
     3841 gcggcgtatt ggaacatatc tttctgtggg tcgcactgtc cggcctggtt tgcggcgcgg
     3901 cgggcggcct gttcggacgt ttgctctatc gcggtgcggc ggcgtttgca ccgcgcaaga
     3961 tacgcggctt catccgcaac cgtccgctgc tgctggcggc actgatgggg ctgctgctcg
     4021 ccctgctcgg cacgttctac caaggcaaaa cctacggcac cggctaccac gaagccgccc
     4081 aagccctgca cggcatctac gaagccccct tcggactcgc cgccgccaaa tggctcgcca
     4141 ccgtattcag ctattgggca ggcgttccgg gcggcatttt cactccctcg ctgaccatag
     4201 gcgcggtttt gggcgagcat atcgccgcca tcgccgacat atcgcagggt gcaaacatca
     4261 tcgtcctcat ctgcatggcg gcatttctgg cgggcgcgac acaatccccg attacttccg
     4321 ccgtcgtcgt catggaaatg acgggcggac aaagcctgct gttttggatg ctaattgcct
     4381 gcattttcgc ctcgcaggtt tcgcgccagt tttcgccgcg tccgttctac cacgcatcgg
     4441 gaatgcgctt ccgccagcgc gtgcttcaag aaaccgccgc ccaaaccggc aatgcgcccg
     4501 caagaccgca aacagcaaac agcaaaacgg gaatgccgtc tgaaaattaa aacgcccccg
     4561 atcaaacgcc ggcagccgcc ttgatttgaa taccgttccg ccgccgcttg aaatttcagc
     4621 aacaatgccg tctgaacgac agaatgcggt tttcagacgg catttcccca tcccgatatt
     4681 gcctaaacaa aaccgaagcg tttgctataa ttgcactttt taccgcacac gcacgcccat
     4741 gtttcccgat ttctcccaaa ccctctccaa agaccgccac ttcctgcaat ccgccttcaa
     4801 aaatcccaac aaatacggcg gcttgtccaa agtcgaagaa aaataccgaa aatcgcacga
     4861 aatctttttg aaacgtttgg cagccttgcc caaacccgaa ttcgacaaca ccctgcccgt
     4921 tcacgaaaaa cttgacgaaa tcaaaaaaac cgttgccgaa catcaggtaa cgattatttg
     4981 cggcgaaacc ggttcgggca aaaccacgca gttgcccaag atttgtttgg aactcgggcg
     5041 cggggtagcg ggtttgatcg ggcataccca gccgcgccgt ttggcggcgc gttcggtggc
     5101 agagcggatt gccgaagagc tgaaatccga aatcggcagc gcggtcggct ataaagtacg
     5161 cttcaccgac cacacctcgc gcgatgcctg cgtcaagctg atgaccgacg gcatcctgct
     5221 ggcggaaacg cagaccgacc gttatctcgc cgcctacgac acgattatca tcgacgaagc
     5281 gcacgagcgc agcctgaaca tcgacttcct tttgggctat ttgaaacaac tcctgccgcg
     5341 ccgccccgat ttgaaagtca tcatcacctc ggcaacgata gacgcagaac gcttctcccg
     5401 acacttcaac ggcgcgcccg ttttagaagt gagcggacgg acgtatcccg tcgaaatcct
     5461 ctaccgaccg ctgaccggca aagacgaaga cgacgcagaa gtggagttga ccgacgcgat
     5521 tgtcgatgcg gcggacgaat tagcgcgaca cggcgaaggc gatattttgg tattcctgcc
     5581 gggcgagcgc gaaatccgcg aaactgccga agccttacgc aaatctacac tgcgccgcaa
     5641 cgacgaaatc cttcccctgt tcgcacgcct gtcgcacgcc gagcagcaca aaatcttcca
     5701 cccttcaggc gcgaaacgcc gcatcgtatt ggcaaccaac gtcgccgaaa cctcgcttac
     5761 cgtgccgggc atcaaatacg tcatcgacac cggcctcgcg cgcgtcaaac gctattccgc
     5821 acgggcaaag gtggagcagc ttcatgtcga aaaaatctct caagccgccg cccgccaacg
     5881 ctccggccgc tgcggacgcg tctccgcagg cgtgtgtatc agactgtttt cagaagaaga
     5941 tttcaacagc cgccccgaat ttaccgaccc agaaatcgtc cgcagcaacc tcgccgccgt
     6001 catcctgcgc atggcatcgc tgaacctggg cgatgtggcg gcattcccat ttttagaaat
     6061 gcccgattcg cggtatatca atgacggttt tcaggtattg ctggaattgg gggcggtaga
     6121 ggccgtctga aaacaagtag gatatacact tctacctgac aaagaccaac aaacgataaa
     6181 actacggcac atctagatgc ccaacctaca acattgcaca cggtaaaaac atgaaacact
     6241 tactcatcga ttttgaaaac gtccagccgc aaaacttaga caaattacca accgaaaata
     6301 cccatatttg gctatttata ggtgtattac acaaaatgtt acctattagt ctggtgcaat
     6361 ccctactacg tttcggcgaa cgtgtccatc ttgtccagtt acaaaaaacg gggaaaaacg
     6421 cattggattt ttacctgtcc tattacctcg gacaaattac cgccacagac cccaatgccc
     6481 aaatcggcat actctcgcgt gatggaggat acgatgttct ggtcgaacat attttgaaaa
     6541 accaccaggc gaagggtatc gtgcgcctag ccaatataga tgaagtacaa catcagaaaa
     6601 ttactaccga accgccgtca gcattgctgg aaaacactcc tcagcctgaa accaccctca
     6661 aaccacagca accattaact tcctatttcc aagcagccct aactgcactg cgccgccccg
     6721 acgctttccg cccctgccgc ctgcataacc tgcgacaaaa tctgcgtaag catattttga
     6781 gtgatttgtt taaagaaaaa accgatgaag aatgcgaaat aaccactgct aacgttatca
     6841 ataaactcaa agcacaaaac ttcatcagca ttgatgaaca ggaaaccgtt tcctaccatc
     6901 tcagtgataa tgatttgtta caaagaatcc aacgccatat tttaagccaa cgtcccaaaa
     6961 cctacgctga ttttcaagcc gtcgtgcaaa accgagcaga tgcacttcac ttaacagtcg
     7021 gtaccaacga cattcaatcc tttgcgcgac atttgcgcga ccaaaacctg atccgccaaa
     7081 acaatgggaa aattgaatat gcaccgttta ctgaacctaa accacagcca acgcccaagc
     7141 agcctaaaaa aaccgcatgg gaacctgatg aaattatttg gaaaaaagtg attgccgcgt
     7201 tatcgttaaa gaaccgtcct aataaaacca aaactttacg caatacaatc caggcactca
     7261 caaaatccaa tgcacaagaa actgacaaac tgctacaaca tttacaagat acccaagtcc
     7321 tacgtattga cggtactaaa attgtgtata tcaagtagga tgggcattta tgcctgacct
     7381 acaaaaccaa aaacaaccta ccacccttaa tcaactccac aaaccctttt cagacaacct
     7441 cgttttttga aaaacaatct gtaaacagat agctgctgaa gaataccgtt gccgagcccc
     7501 aaaacccgtc ctgcaacttt tattgtgaac ttcccattat gaaaaaatcc cttttcgttc
     7561 tctttctgta ttcgtcccta cttactgcca gcgaaattgc ttatcgcttt gtattcggaa
     7621 ttgaaacctt accggctgca aaaatggcag aaacgtttgc gctgacattt gtgattgctg
     7681 cgctgtatct gtttgcgcgt tataaggcga cgcgtttgtt gattgcggtg tttttcgcgt
     7741 tcagcattat tgccaacaat gtgcattacg cggtttatca aagttggatg acgggcatca
     7801 attattggct gatgctgaaa gagattaccg aagttggcgg cgcgggggcg tcgatgttgg
     7861 ataagttgtg gctgcctgcg ttgtggggca tgttggaagt catgttgttt tgcagccttg
     7921 ccaagttccg ccgtaagacg catttttctg ccgatatact gtttgccttc ctaatgctga
     7981 tgattttcgt gcgttcgttc gacacgaaac aagagcacgg tatttcgccc aaaccgacat
     8041 acagccgtat caaagccaat tatttcagct tcggttattt tgtcggacgc gtattgccgt
     8101 atcagttgtt tgatttaagc aaaatccctg tgttcaaaca gtctgcgcca agcaaaatcg
     8161 ggcagggcag tgttcaaaat atcgtcctga ttatgggcga aagcgaaagc gcggcgcatt
     8221 tgaaattgtt tggctacggg cgcgaaactt cgccgttttt gacccagctt tcgcaagccg
     8281 attttaagcc gattgtgaaa caaagttatt ccgcaggctt tatgacggca gtatccctgc
     8341 ccagtttctt taacgtcata ccgcatgcca acggcttgga acaaatcagc ggcggcgata
     8401 ccaatatgtt ccgcctcgcc aaagagcagg gctatgagac gtatttttac agtgctcagg
     8461 ctgaaaacca aatggcaatt ttgaacttaa tcggtaagaa atggatagac catctgattc
     8521 agccgacgca gcttggctac ggcaacggcg acaatatgcc cgatgagaag ctgctgccgc
     8581 tgttcgacaa aatcaatttg cagcagggca ggcattttat cgtgttgcac caacgcggtt
     8641 cgcacgcccc atacggcgca ttgttgcagc ctcaagataa agtattcggc gaagccgata
     8701 ttgtggataa gtacgacaac accatccaca aaaccgacca aatgattcaa accgtattcg
     8761 agcagctgca aaagcagcct gacggcaact ggctgtttgc ctatacctcc gatcatggcc
     8821 agtatgttcg ccaagatatc tacaatcaag gcacggtgca gcccgacagc tatctcgtgc
     8881 cgctggtgtt gtacagcccg gataaggccg tgcaacaggc tgccaaccag gcttttgcgc
     8941 cttgcgagat tgccttccat cagcagcttt caacgttcct gattcacacg ttgggctacg
     9001 atatgccggt ttcaggttgt cgcgaaggct cggtaacggg caacctgatt acgggtgatg
     9061 caggcagctt gaacattcgc gacggcaagg cggaatatgt ttatccgcaa tgagtggcgt
     9121 aaaaaccaat aaagacaaat ttagatgatg tcggggaaga tgcccgaccg acaagactat
     9181 gcaaaatatg aaaaaccaag tacgcggatc aggcatggat gcacgatcca atccggccaa
     9241 tgtttcagac ggcctgcaaa acagttcggg tcatatcggt accaacacgc gttaccgcct
     9301 gaccaaactc ggcgaacaaa tggcgcgcct gcccatcgac ccgaaaatcg cgcgcatttt
     9361 gttggcggcg aagaagcacg actgcatggc ggaaatattg gtgatcgcgt ccgcgctgtc
     9421 gattcaagac ccgcgcgagc ggccgctgga agcgcgcgat gccgccgcca aggcgcacga
     9481 gcgttttacc gacaagcaat ctgactttct tgcctatctg aacatttggg acagcttcca
     9541 gcgcgagcgc gacaagggct tgtccaacaa gcagttggtg cagtggtgcc gtcaatattt
     9601 cctgtcgcac ctgcggatgc gcgagtggcg cgagctgcac caccagcttg cccaaaccgc
     9661 gattgaaatg ggtttgacca ccaaggaagc ggctttcaga cgactttccg aaatcaagca
     9721 gcttacgtcg tctgaaaacc aaggcgatca agacttatcc gccaaacgca aacaaaaaca
     9781 actggataag aaacaacacc gcgcccaaat ccgcgccgcc aaagaagcgg gctacgaaca
     9841 aatccaccgc gccctgctca ccggccttat cgccaacgtc ggcatgaaat cgcccgacgg
     9901 caacgactat accggcgcgc gcggcagccg tttccacctt ttccccgcct ccgccctgtt
     9961 caaagccaaa cccaaatggg tgatggcggc agaactcgtt gaaacgacaa aactttatgc
    10021 gcgcgacgtc gccgttatcc agcccgaatg gattgagcag gaagccccgc acctcgtccg
    10081 ctaccactat ttcgagccgc actgggaaca aaaacgcggc gaagtcgtcg ccagcgaacg
    10141 cgtgacgctt tacggcctga ccgtattgcc gcgccgcccc gtgccttacg gcaaagttgc
    10201 gcccgaagaa gcacgtgaaa tctttatccg cagcgcgttg gtggcgcagg aatgcgattt
    10261 gaaagcggat ttttttgtcc acaataaaaa gctgattaaa gaaattaccg aactcgaaca
    10321 caaatcgcgc aagcaagacg tattggtcga cgacgaagcc ctgtttgcgt tttataacga
    10381 acgcctgccc gaaatggctt ggaaagacgc gcaaggcagc gtttggggaa gtgaagattc
    10441 cgtacggatt attgaatctg acaaagccga gaggtcgtct gaaaatgagc gcaacgagtt
    10501 tcgtaaaaac aagcgtaatg ggtctcgcca aaatgaaaat cacggcaaca ccgtaggttg
    10561 ggttgaaaac ccaacatcag ccgcaactgc aaaaactgtt gggtttgaca acccaaccta
    10621 cgctactcag caacccaccc cctcccccgc gagggagggt cggggagagg gcaaaacagt
    10681 tgccgcacaa accaactttt ccgcaaccgc agcaaaccct ctcccgcagg agagggagca
    10741 gagtgccgca gcttcagcgg tttcaaacga cctgcatcct gcaaatcccc aacaaaccgc
    10801 cccctccccc gtgggggagg gctggggaga gggcaaaaca gttgccaccc aaaccaactt
    10861 ctccgcaacc acagcaaacc ctctccctaa ccctctccca caggaggggg aacagagtgc
    10921 cgcagcttca gcggtttcaa acgaccctca accccaaaag cagccagcac cccaaaaaga
    10981 ccgtctgaaa cccctccccc tcgccgacat ccgcaccttc caagcctggc tcaaaaccgc
    11041 cgaacgcgag aacccgcgcc tgctgttcct cagccgcgac gatttgatgc aacacgccgc
    11101 cgcacacatt accgaagaac aattccccaa attctggcaa accgcagacg gcaagttcga
    11161 actcagctac cgcttcgagc cgcaccaccc gctcgacggc gttaccctca ccctgccgct
    11221 taccgtgctc aaccgcatca gccccgccgc cctcgaatgg ctcgtgcccg gtatgttgcg
    11281 cgagaaaatc cagctgctga ttaaagcact gcccaagcaa atccgccgca tctgcgtgcc
    11341 cgtgcccgaa ttcatcaccc aatttttaag ccaaaacccc gaccgcaacg cccccatcct
    11401 gccccaactc gcccaagcca tcgccaaaac cgcaggcgac atccgcatat tcgagcaaat
    11461 caaccaagac gaatgggccg cgttcaggct gcccgaacac tgctatttca acctccgcat
    11521 catcgacgac ggcggacaag aattagccat agggcgcgat ttaatccaaa tccaacaaca
    11581 actcggccaa gccgccgccg ttaccttccg cgacaacacc caagaattcg agcgcgacaa
    11641 cgtgaccaca tgggacatcg gcatcctgcc cgaatccatc aaattcgcac gcggcaaaca
    11701 acagcttacc ggctatctcg gcctgcaaaa agaaaaagac ggccgcatcg ccctgcgcct
    11761 gttcgacaca atagaagccg ccgaacaggc acaccgtcaa ggcgtgatag aactcatgaa
    11821 actacaacta aaagaacaag ttaaagacct gaacaaaggc atccaaggct tcacccaagc
    11881 cgccatgctg ctcaaacaca tcaacgccga caccctgcgc gacgacctca cccaagccgt
    11941 ctgcgaccgc gcctttatcg gcgaagacga gctgccgcgt aacgaaaaag cctttaaaga
    12001 gcaaatcaaa cgcgcccgca gccgcctgcc tgccgtcaaa gaagccctca gccgctacct
    12061 gcaggaaacc gcagccgcct acgccgaact caacagcaaa ctcggcaaac acccattgac
    12121 ccacctccta cgccaacgcc tgcaaaccct gctcgccgcc ggcttcgcca cccgcacccc
    12181 gtgggcacaa tggccgcgcc tccccatcta cctcaaagcc atgaccctgc gcctcgaaaa
    12241 atacagcagc aaccccgccc gcgacgcagc ccgcgaagcc gatatccaag agctggaaca
    12301 aatgtggcag gaaaaaacag acagcctgat taaacaaggt ctccccattt cagacggcct
    12361 cgccgcgttt aaatggatga ttgaagaatt gagggtgtcg ctgttcgcgc aggaattgaa
    12421 gacaccgtat ccggtgtcgg tgaagcggtt gttgaagatg tgggaggatc ttaattaaag
    12481 gaagatgccg tctgattttt tcagacggca tcttttattt ccctgaccaa ccgatttaat
    12541 cgctccctac caatagcttt attttttaat tcgcactccc aaacgacaat cactttgaaa
    12601 ccgatctttt ccagctcggt ttcattttta atatcacgtt cgcaattttt tgtgattttt
    12661 tccaaccaaa aatccgtatt gcttttcggg atatgtcctt tattacaaga atgcccgtac
    12721 caaaaacagc cgtgtataaa cacgactgtt ttatatttcg gcaaaacgat atccggtttg
    12781 cctgcatagc gtttatcgtt tttccgataa cgaaaacctt gggagaaaag aaatttcctt
    12841 accaatattt ccggtttggt ttctttgcta tggatttttg acatcacgaa agaacgtttg
    12901 gatgtagtga aaatatcggt cataaattac ttggaagata ccaccttcga tcgttttttt
    12961 gtctgttcca cttttcttaa caaatacgaa accaagctta ttaaatccaa agcatcctta
    13021 tcattaaaaa tactaggaga taaatttgct cttaactcat gttgtacagg atttctaaat
    13081 ccagtccatg ttccgcatgc aagctgttca agaccatctt ctaaattttg ttccgccttc
    13141 gttttgttat tcgttaatag aagtatagaa tttttactcc cgaaagcttg ttcaatcaat
    13201 tctcttccgt ctatgctatg aagacctgtt tgcttctgaa ccttattttc gaaaacttta
    13261 actgcctcga ttgcagcact taaataatcc ttcttttcat tgtaaaaatc attacaggca
    13321 gtatgcaaat cctgatgcaa atgccgccaa tgatagtaag gatattctgg aataatacta
    13381 tgtaaggcag agattacttc cgcttgctct ttatttgtaa gctccgaatc ttccaaacga
    13441 ttcaaaataa cttctactgg ttccctttcc ttttctggca atttgttttt ccaattttcg
    13501 atatcaaccc cgctttcacc tttcacttcg tcatcttttt ctttttttct tctttttctc
    13561 caatcttgcc cgatggctcg aacgatttcc ccaaggaaaa cccgtaactt tgaagtttta
    13621 ggatgcttcc aatccaatga tgtcctatct gtagcaatta aatcttcatc atcattatct
    13681 ataaaatcaa tacttaacca tcctgtcaga taggaataga aatggctgga ttcgctatca
    13741 gtgaaaaact cgggcatatt taccattctg ccgttggcaa acaaggtaat acctttcata
    13801 ttattcttta aaggtttttc cgttgtaatg aacttacctt gtattaatcc gctgtattca
    13861 tactgttcga attttgaaga taacgatgaa atattggttg ctagatcctg gtattcccat
    13921 tcgaattgtg gggtaacaag atcatatttt agatttccat caatgatttt gggttccgag
    13981 ccgttcaagc ttactttgat tttaaaatcc tgagccggaa aatcaaacaa gcgggaaaga
    14041 tgctccacat aattatctaa cgggtatcct tgttttttcg tcagttcggt taaagttatg
    14101 gttgttccgt tttcggtatt gggttcaaca gattctttct gaaactccgg ttgataaata
    14161 cgctcacttt ttttaatctc tgcataatcc aaagtaaaag taacccgttc gtttccttgg
    14221 atagtagaaa tttcaatttt gttgccaagc ccgaataatg ccaatttacc aaggcctttt
    14281 ttacccgttg gaattcttcc gcacggggag gcttgttttt cttcccttct gttccgaccg
    14341 attctcaaat aaaaatcatt gatttcatcg aagctcattc ctataccatt atctttaata
    14401 acgattttat gctccggttt atcgaataac ctaacttcca cttccgtagc acatgcatcg
    14461 taggcattcg ctatcaactc ggcaatcgca ggaacagtgt gcgaatacat ctttacaccc
    14521 aaatgttcga ttacggttgg ctcgaaactc attttcaatt tttcttcaga catgttttct
    14581 ccttttctaa cattcgatat tatcaacaat tgccctgcct attttttccg catacatcgg
    14641 aggaacggca ttaccaatca aacgggctat cttgtccctg ctgcccgctt taaagacata
    14701 gttacgaggg aacgattgca atgttgcacc ttcgcgcagt gataacgccc tatcttcttc
    14761 aggatgggca aacctcccgt tggaaatact aaagaatttg gtcgttatgg taggtgcggg
    14821 cttatcccac catagcctac caaacgtgtc tttaaaacta ttgtcttttc cgataaaaca
    14881 ttccagctgt aattcgggaa tatgcgcaaa agccaaacgg tttcctccgt ttttaggtat
    14941 caaagccaat cgtttcaagt tgatatcaga taatcccgca cagctatgca taaaatccgt
    15001 ttcgtcttgg tgtcctgcaa taattttggg aaagccattt tccattccca aaacatcgcg
    15061 taccgtaagc cgtttgcccg aatacttgac tggttccagc ttttctttgg ttattctgtt
    15121 tgcaattaac gtaaatcttt tacggctttg gggaattccg taatcagccg tattgtgaat
    15181 accgaaatgg acggtaaatc ctttttcttc caataacttt atgaaattat caagcctgct
    15241 ttctttcatt ctgctcagaa ttcccggtac gttctctaca acaacatatc cgggattgaa
    15301 atattctaca aaccgctgaa actccaaaag caaactcttg gatttttccg attttctttt
    15361 gtctgtttga ataacactcc aatattgaca aggactacaa cctataagaa tcaaatcatc
    15421 atcattcttt tttaacccga gttctttttc caaggtttca ggctgcaatt caaaaacatc
    15481 agcctgtata aatttggcat ttatattggc ttcatatgtt tctttgcagc tgggttcgta
    15541 atctatcccg gctaaaacct gaataccggc ggattgcatt ccatagctca ttccacctcc
    15601 gccacagaaa aaatcaaccg cctttaactt actgtttttc atttctattt aaataatta
//
LOCUS       DAXIFS010000027        15326 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.027, whole genome shotgun sequence.
ACCESSION   DAXIFS010000027 DAXIFS010000000
VERSION     DAXIFS010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15326
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.027"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            316..1191
                     /gene="prpB"
                     /locus_tag="ACFOCA_000665"
     CDS             316..1191
                     /gene="prpB"
                     /locus_tag="ACFOCA_000665"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HFC6987420.1"
                     /translation="MSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIYL
                     SGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIRN
                     FERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTDA
                     LAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTPL
                     YTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEHL
                     NYHAFEQKLDKLFQK"
     gene            1277..2431
                     /gene="prpC"
                     /locus_tag="ACFOCA_000666"
     CDS             1277..2431
                     /gene="prpC"
                     /locus_tag="ACFOCA_000666"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HFC6987421.1"
                     /translation="MTETTQTPTFKPKKSVALSGVAAGNTALCTVGRTGNDLSYRGYD
                     ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKTKLKSMRGLPIRVIKVLESLPAHTHP
                     MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
                     DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
                     ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
                     DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
                     TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEER"
     gene            2524..3246
                     /locus_tag="ACFOCA_000667"
     CDS             2524..3246
                     /locus_tag="ACFOCA_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HFC6987422.1"
                     /translation="MDKDKGSYAGIPVQNTKELVWQKIQDIPISECGEPLVSVGNTGR
                     IRVNPVYFSQGIEGAINSVLLRRSVADRLTQVVSLLPEVYGLEIFDGWRPVIVQRALR
                     ENMKQEIEKRHPEYDEVQVREALDCFAADPDRAGMPLPHLTGGSVDVGLFDIKSGKSL
                     DMGSEFDATGHLSYSDALEKEGEYFSSARNLRRILIHAMKEAGFSNLPTEWWHFDYGN
                     QNWAYFTQQSNAVFGAVEEQDT"
     gene            3272..4477
                     /locus_tag="ACFOCA_000668"
     CDS             3272..4477
                     /locus_tag="ACFOCA_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF819 family protein"
                     /protein_id="HFC6987423.1"
                     /translation="MQTLISADNHLLLWAFVMLAAAAAIFIEQNSRLAGKVPGAVLAL
                     LIALIASNLGVIPTDAPVFDAVWSYIVPLAIPLLLFQLDLHALFKESGRMLFIFLISS
                     LGTVIGTLVSFALLKNYIPELDKVAGMISASYTGGGVNFAAMSAKLNPAKDVIAATIV
                     ADNLMMACYFFILIGISSSYWVRKVWGSPYQDKLEQEYHDPSVNKAAEYWKPKSISLQ
                     SIALSLAASILLVAVSFSLSSFLQNHFQSVDGVALKMLTGLISDKYLLLTTFTLAVVL
                     FFRKGIQKLDGSQELGTYCIYLFFVVIGVPASIPLIIKTAPLLFVFTLIIAVLNLLLT
                     LVLGKLFKFSIEEIVLACNANIGGPTTAAALAISKGWRDLVGAILLIGTVGYIIGNYI
                     GSFVYALLS"
     gene            4580..7186
                     /gene="acnD"
                     /locus_tag="ACFOCA_000669"
     CDS             4580..7186
                     /gene="acnD"
                     /locus_tag="ACFOCA_000669"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047456 - 2-methylisocitrate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HFC6987424.1"
                     /translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
                     ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
                     IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNREIEDRRNEDRFHFINWT
                     KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDALGVIS
                     VGVGGLEAETVMLGRASMMRLPDIVGVELNGKRKAGITATDIVLALTEFLRKERVVGA
                     FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
                     TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATVDLAAKGLAKPYE
                     EPSDGQMPDGAVIIAAITSCTNTSNPRNVVAAALLARNANRFGLKRKPWVKTSFAPGS
                     KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
                     GNRNFDGRVHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGKEIRLKDIWPA
                     DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
                     GERTLSGMRPLAILPDNITTDHLSPSNAILASSAAGEYLAKMGLPEEDFNSYATHRGD
                     HLTAQRATFANPKLFNEMVRNEDGSVRQGSLARVEPEGQTMRMWEAIETYMNRKQPLI
                     IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPGTNRH
                     TLQLDGTETYDVVGERKPRCDLTLVIHRKNGETVEVPVTCRLDTAEEVLVYEAGGVLQ
                     RFAQDFLEGNAA"
     gene            7539..8708
                     /gene="prpF"
                     /locus_tag="ACFOCA_000670"
     CDS             7539..8708
                     /gene="prpF"
                     /locus_tag="ACFOCA_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HFC6987425.1"
                     /translation="MPQIKIPAVYYRGGTSKGVFFKRSDLPEAAREAGSARDKILLRV
                     LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
                     NLTAAVGAFAIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
                     LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTVFLN
                     AADLGYTGKELQDDINNDAAALEKFEKIRAYGALKMGLISDVSEAAARAHTPKVAFVA
                     PAADYTASSGKTVNAADIDLLVRALSMGKLHHAMMGTASVAIATAAAVPGTLVNLAAG
                     GGTRKEVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRMPEDCF"
     gene            9122..10321
                     /locus_tag="ACFOCA_000671"
     CDS             9122..10321
                     /locus_tag="ACFOCA_000671"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6987426.1"
                     /translation="MSDQLILVLNCGSSSLKGAVIDRKSGSVVLSCLGERLTTPEAVI
                     TFNKDGNKRQVPLSGRNCHAGAVGMLLNELEKHGLHDRIKAIGHRIAHGGEKYSESVL
                     IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
                     AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
                     GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGMDVAQVDEMLNKKSGLLGIS
                     ELSNDCRTLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
                     RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
                     AELAGIL"
     gene            10429..11049
                     /locus_tag="ACFOCA_000672"
     CDS             10429..11049
                     /locus_tag="ACFOCA_000672"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6987427.1"
                     /translation="MAQFFAVHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKL
                     GDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQ
                     ATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
                     RERLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
     gene            complement(11176..11619)
                     /locus_tag="ACFOCA_000673"
     CDS             complement(11176..11619)
                     /locus_tag="ACFOCA_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HFC6987428.1"
                     /translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKV
                     VTALVKGGFLHSVRGKGGGLRLAAPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
                     CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
     gene            11793..12161
                     /locus_tag="ACFOCA_000674"
     CDS             11793..12161
                     /locus_tag="ACFOCA_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6987429.1"
                     /translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFS
                     ELETHFREEEAKFAPIWQNVAPELKQRFEKDHARLRQMMASPEYGNAAWNTAFATTLR
                     DHARFEERELFPAAEPFLPA"
     gene            12206..13360
                     /locus_tag="ACFOCA_000675"
     CDS             12206..13360
                     /locus_tag="ACFOCA_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6987430.1"
                     /translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
                     YWHAHEMIWGYAGLVVIAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIAAFIPGWG
                     ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
                     GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
                     MAHGVMPWLSAAFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
                     SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKSVPFAFWLMMAAT
                     AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
     gene            complement(13417..14289)
                     /locus_tag="ACFOCA_000676"
     CDS             complement(13417..14289)
                     /locus_tag="ACFOCA_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFC6987431.1"
                     /translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
                     ALERGVIDRASVAIDADSIGGADLVLIATPVATFPAILTALRPVLPEHTWISDVGSTK
                     SSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
                     ALVEELWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
                     TGFRDFTRIASGHPAVWADICIANKDSLLQLVQGLGKQLDVLADILTADDREALYRYF
                     EEAKTTRDRWLDGN"
     gene            14374..15186
                     /locus_tag="ACFOCA_000677"
     CDS             14374..15186
                     /locus_tag="ACFOCA_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFC6987432.1"
                     /translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGVDWVLLPEY
                     WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEAGKVMNTLL
                     VYGRDGKRTGLYHKMHLFGFSGLGERYAEADTIRAGGDVPHLSAEGVSVAAGICYDVR
                     FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
                     TFGHSMIVDPWGDVLDVLPEGEGVVTADIDANRLNSVRNRLPALKYRVLDAV"
BASE COUNT         3575 a         3943 c         4197 g         3611 t
ORIGIN      
        1 tcagtcttgt gttttagatt atcgaaaaat aaaactacat aacactacaa aggaacatta
       61 ctatgaaacc aattcagatg ttttcccctt ttctgaataa tccccttgtt ttcttcttgt
      121 ctgcggtttt gccgcataat tccgaacggt ctgctgtttt tctttgattc gttttaaata
      181 tcaataagat aatttttccc atatattttt aatgattgga ttgggatgcc cgacgcgtcg
      241 gatggctgtg ttttgccgtc cgaatgtgat ggaagcctgt ccatactgaa aaaaagtcta
      301 taaaggagaa atatgatgag tcaacactct gccggagcac gtttccgcca agccgtgaaa
      361 gaatcgaatc cgcttgccgt cgccggttgc gtcaatgctt attttgcacg attggccacc
      421 caaagcggtt tcaaagccat ctatctgtcc ggcggcggcg tggcagcctg ttcttgcggt
      481 atccctgatt tgggcattac cacaatggaa gatgtgctga tcgacgcacg acgcattacg
      541 gacaacgtgg atacgcctct gctggtggac atcgatgtgg gttggggcgg tgcattcaat
      601 attgcccgta ccattcgcaa ctttgaacgc gccggtgttg cagcggttca catcgaagat
      661 caggtagcgc aaaaacgctg cggccaccgt ccgaacaaag ccattgtatc taaagatgaa
      721 atggtcgacc gtatcaaagc tgccgtagat gcgcgcgttg atgagaactt cgtgattatg
      781 gcgcgtaccg atgcgctggc ggtagaaggt ttggatgccg ctatcgaacg cgcccaagct
      841 tgtgtcgaag ccggtgcgga catgattttc cctgaagcca tgaccgattt gaacatgtac
      901 cgccaatttg cagatgcggt gaaagtgccc gtgttggcga acattaccga gtttggttcc
      961 actccgcttt atacccaaag cgagctggct gaaaacggcg tgtcgctggt gctgtatccg
     1021 ctgtcatcgt tccgtgcagc aagcaaagcc gctctgaatg tttacgaagc gattatgcgc
     1081 gatggcactc aggcggcggt ggtggacagt atgcaaaccc gtgccgagct gtacgagcat
     1141 ctgaactatc atgccttcga gcaaaaactg gataaattgt ttcaaaaatg atttaccgct
     1201 ttcagacggt ctttcaacaa atccgcatcg gtcgtctgaa aacccgaaac ccataaaaac
     1261 acaaaggaga aataccatga ctgaaactac tcaaaccccg accttcaaac ctaagaaatc
     1321 cgttgcgctt tcaggcgttg cggccggtaa taccgctttg tgtaccgttg gccgtaccgg
     1381 caacgatttg agctatcgcg gttacgacat cttggatttg gcacaaaaat gcgagtttga
     1441 agaagtcgcc cacctgctga ttcacggtca tctgcccaac aaattcgagc tggccgctta
     1501 taaaaccaag ctcaaatcca tgcgcggcct gcctatccgt gtgattaaag ttttggaaag
     1561 cctgcctgca catacccatc cgatggacgt aatgcgtacc ggcgtatcca tgctgggctg
     1621 cgttcatcct gaacgtgaaa gccatccgga aagtgaagcg cgcgacatcg ccgacaaact
     1681 gatcgccagc ctcggcagca tcctcttgta ctggtatcaa tattcgcaca acggcaaacg
     1741 cattgaggtt gaaagcgacg aagagaccat cggcggtcat ttcctgcaac tgttgcacgg
     1801 caaacgccca agcgaatcac acatcaaagc catgcacgtt tcactgattc tgtatgccga
     1861 acacgagttc aacgcttcta cctttaccgc ccgcgtgatc gccggtacag gctctgatat
     1921 gtactccagc attaccggag caatcggcgc gttgaaaggt ccgaaacacg gcggcgcgaa
     1981 cgaagtggct tacgatattc aaaaacgcta ccgcaatgcc gacgaagctg aagccgacat
     2041 ccgcgaacgc atcggccgca aagaaatcgt gatcggtttc ggtcatccgg tgtataccat
     2101 ttccgacccc cgcaacgttg tcattaaaga agtggcacgc ggtttgagca aagaaaccgg
     2161 cgatatgcgc ctctttgaca ttgccgaacg tttggaaagc gtgatgtggg aagagaaaaa
     2221 aatgttcccg aatctggact ggttctctgc cgtttcctac caaaaattgg gcgtaccgac
     2281 cgctatgttc acaccgctgt tcgtaatttc ccgtacaacc ggttggagcg cacacgttct
     2341 tgagcaacgc aaagacggca aaatcatccg tccgagcgca aactacacgg gccctgaaga
     2401 tttggcgttt gtggagattg aagaacgctg atgattttca gacgaccttg tttgtacaag
     2461 gtcgtctgaa aaaagaaatt taatgaattt attggcacac taattattaa tgcggaacat
     2521 ttgatggata aggacaaggg gtcttatgcg ggtattcctg tacaaaatac caaagagtta
     2581 gtttggcaga aaatacaaga catacctatt tctgaatgtg gggaaccgtt ggtcagtgtt
     2641 ggtaataccg gacgcattcg tgtcaatcct gtttattttt ctcagggtat tgaaggggcg
     2701 ataaatagtg ttttattgcg tagaagtgtt gctgataggc tgactcaggt tgtctctttg
     2761 ctgccggaag tgtacgggtt ggaaattttt gatggttggc gtcctgtcat agtgcaaaga
     2821 gcattacgag aaaatatgaa gcaagaaatt gaaaaacgcc atccggaata tgatgaagtt
     2881 caagttagag aagcactgga ctgttttgct gctgatccag atcgggcagg aatgcctctg
     2941 ccccatttga caggcggatc tgttgatgtc ggattgtttg atataaaaag tggcaaaagt
     3001 ttggatatgg gaagtgagtt tgatgcaact ggacatttat cttatagcga tgctttagag
     3061 aaagaaggtg agtatttctc ctctgctcgt aatttacgcc ggattttgat tcatgcgatg
     3121 aaagaggcag gatttagtaa tttgccaacc gaatggtggc atttcgatta tggcaaccaa
     3181 aattgggctt attttaccca acaaagcaac gcagtttttg gggcggtaga agagcaggat
     3241 acttaaatta aaataaaaat tgggaggaaa aatgcaaact ttaatttcag cagataatca
     3301 tttgctgctg tgggcttttg ttatgttagc tgccgctgct gcgattttta ttgagcaaaa
     3361 cagtcgcttg gctgggaaag tccctggtgc agtattagct ttattgattg cgttgattgc
     3421 ttctaatttg ggtgttattc cgacggatgc tccagtattt gatgctgtat ggtcttatat
     3481 tgtacctctt gctattccgt tgttattgtt tcaattagat cttcatgctc tatttaagga
     3541 aagtggacgt atgctgttta ttttcctgat tagttcacta gggacggtca ttggaacgct
     3601 tgtctcattt gcactattga aaaactatat tcctgaacta gataaggtag ctggcatgat
     3661 ttcagcatct tatacgggag gtggtgttaa ttttgcagct atgtcagcta agcttaaccc
     3721 tgctaaagat gttattgcag caacaattgt tgctgataat ttgatgatgg cttgttactt
     3781 ttttattttg attggtatct cttcctcata ttgggtcaga aaagtttggg gaagtccata
     3841 tcaggataaa ttggagcagg aatatcatga tccgagtgtg aataaggctg ccgagtattg
     3901 gaaacctaaa tccatttcgc tacagagtat agccttatct ttggctgcct cgattttgtt
     3961 ggtcgcagtt tcattctcat tatccagttt tttgcaaaat cattttcaaa gtgttgatgg
     4021 tgttgcatta aaaatgctga caggtttaat tagtgacaaa tatttgctgt taacgacatt
     4081 tacattggca gttgttttat ttttccgtaa aggcattcaa aaactagatg gcagtcaaga
     4141 attagggaca tattgtattt atctgttttt tgttgtgatt ggtgttcctg cctctatacc
     4201 gttaattatt aaaacagcac cattactctt tgtttttact ttgattattg cggtattgaa
     4261 tttgttactg acgttagtgt taggcaagct gttcaaattc agtattgaag aaattgtatt
     4321 ggcttgtaat gccaatattg gagggccgac tactgcagca gccttagcca tcagtaaagg
     4381 ttggcgtgat ttagtcggtg caattttgtt aattggtact gtaggctaca ttatcggtaa
     4441 ctatataggt tcgtttgtat atgccctatt gagctgaaga ctaatctaac aatccatgaa
     4501 cattttcaga cgaccccctt ccaaaaacgt cggctgaaac ctcaaaccac aagaaaaaca
     4561 gatccccagg agaaccgaca tggctgccaa ccaacgttac cgcaaaccgc tgcccggtac
     4621 ggatttggaa tactacgacg cgcgtgcggc gtgtgaggac atcaagcccg gctcttacga
     4681 caagctgcct tatacaagcc gtatcttggc tgagaacttg gtcaaccgcg cggacaaagt
     4741 cgatttgccg acgctgcaaa gctggctggg ccagttgata gaagggaagc aggaaatcga
     4801 ctttccgtgg tatcccgcgc gggtggtgtg ccacgatatt ctggggcaga ccgcgctggt
     4861 ggatttggcg ggcttgcgcg atgcgattgc cgaaaaaggc ggcgatcctg ccaaagtgaa
     4921 tccggtggtg caaacccagc ttatcgtcga ccactctctg gcggtggagt gcggcggtta
     4981 cgatcctgat gccttccgca aaaaccgcga aatcgaagat cgacgcaacg aagaccgttt
     5041 ccacttcatc aactggacaa aaaccgcgtt tgaaaatgtg gacgtgattc cggcgggcaa
     5101 cggcatcatg caccaaatca atctagaaaa aatgtcgccg gttgttcaag ttaaaaacgg
     5161 cgtggctttc cccgatacct gcgtcggcac ggattcgcac acgccgcacg tcgatgcgct
     5221 gggcgtgatt tccgtgggcg tgggcggatt ggaagcggaa accgtaatgc tgggacgcgc
     5281 gtccatgatg cgcctgcccg atattgtcgg cgttgagctg aacggcaaac ggaaggcggg
     5341 cattacggcg acggatattg tgttggcact gaccgagttt ctgcgcaaag aacgcgtggt
     5401 cggggcgttt gtcgaattct tcggcgaggg cgcgagaagc ctgtctatcg gcgaccgcgc
     5461 gaccatttcc aacatgacgc cggagttcgg cgcgactgcc gcgatgttcg ctattgatga
     5521 gcaaaccatt gattatttga aactgaccgg acgcgacgac gcgcaggtga aattggtgga
     5581 aacctacgcc aaaaccgcag gcttgtgggc agatgccttg aaaaccgccg tttatcctcg
     5641 cgttttgaaa tttgatttga gcagcgtaac gcgcaatatg gcaggtccaa gtaacccgca
     5701 tgcccgtttt gccaccgtcg atttggcggc gaaagggctg gcgaagcctt acgaagagcc
     5761 ttcagacgga caaatgcccg acggcgcggt catcatcgcc gcgattacca gttgcaccaa
     5821 cacttccaac ccgcgcaacg tcgttgccgc cgcgctcttg gcgcgcaacg ccaaccgctt
     5881 cgggctgaaa cgcaaaccgt gggtcaaaac ctcgtttgcc cccggttcga aagtggcgga
     5941 aatttatttg aaagaagcag gcctgctgcc cgaaatggaa aaactcggct tcggtatcgt
     6001 cgccttcgcc tgcaccacct gcaacggcat gagtggcgcg ctggatccga aaatccagaa
     6061 agaaatcatc gaccgcgatt tgtacgccac cgccgtatta tcaggcaacc gcaacttcga
     6121 cggccgtgtc catccgtatg cgaaacaggc tttcctcgct tcgcctccgt tggtcgttgc
     6181 ctacgcgctg gcaggcagta tccgtttcga tattgaaaac gacgtactcg gcgttgcaga
     6241 cggcaaggaa atccgcctga aagacatttg gcctgccgat gaagaaatcg atgccgtcgt
     6301 tgccgaatat gtgaaaccgc agcagttccg cgatgtgtat gtaccgatgt tcgacaccgg
     6361 cacagcgcaa aaagcaccta gtccgctgta cgattggcgt ccaatgtcca cctatatccg
     6421 ccgcccacct tactgggaag gcgcattggc aggggagcgc acattgagcg gtatgcgtcc
     6481 gctggcgatt ttgcccgaca acatcaccac cgaccacctc tcgccatcca atgcgatttt
     6541 ggcaagcagt gccgcaggcg aatatttggc gaaaatgggt ttgcctgaag aagacttcaa
     6601 ctcttacgca acccaccgcg gcgaccactt gaccgcccaa cgcgcaacct ttgccaatcc
     6661 gaaactgttt aacgaaatgg tgagaaacga agatggcagt gtacgccaag gttcgctggc
     6721 acgcgttgaa cccgaaggcc aaaccatgcg catgtgggaa gccatcgaaa cctatatgaa
     6781 ccgcaaacag ccgctcatca tcattgccgg tgcggactac ggtcaaggct caagccgcga
     6841 ctgggctgca aaaggcgtac gcctcgccgg tgtggaagcg attgttgccg aaggcttcga
     6901 gcgtatccac cgtaccaact tgatcggtat gggcgtattg ccgctgcagt tcaaaccggg
     6961 taccaaccgc cacaccttgc aactggacgg tacggaaacc tacgacgtgg tcggtgaacg
     7021 caaaccgcgc tgcgatctga ccctcgtgat tcaccgtaaa aacggcgaaa ccgtcgaagt
     7081 tcccgttacc tgccgcctcg atactgcaga agaagtattg gtatatgaag ccggcggcgt
     7141 gttgcaacgg tttgcacagg attttttgga agggaacgcg gcttagaggt cgtctgaaaa
     7201 gcaagacgta gcgtgggtcg ggttcaacat tttgctcatt cacgtaattc tcgatatggc
     7261 aggcatctac tgtaaatcgt cattcccgcg caggcgggaa tccagaaagt ggaattgagg
     7321 aaaccttatt tatccgatga gtttctgtgc ggacaaattt ggattcccgc ctgcgcggga
     7381 atgacggggt ttaataatct gccgtatcac aacacagtag ccgtagattg tggcgaaccc
     7441 cgacagtttg cggaatcaaa cggctttggt cggagtggca gcctaatcca ctataaaaat
     7501 cgtgggcaga gcccacgcta cataaggaga atctagaaat gccgcaaatt aaaattcccg
     7561 ccgtttacta ccgtggcggt acatcaaaag gcgtgttttt caaacgttcc gacctgcccg
     7621 aggcggcgcg ggaagcgggc agcgcacgcg acaaaatcct cttgcgcgta ctcggcagcc
     7681 cggatcccta cggcaagcag atagacggtt tgggcaacgc cagctcgtcc accagcaagg
     7741 cggtgatttt ggacaagtcc gaacgcgccg atcacgatgt cgattacctt ttcgggcaag
     7801 tttccatcga caaacctttt gtcgattgga gtggcaactg cggcaacctc accgccgccg
     7861 tgggcgcatt tgccatcgag caaggcttgg tcgataaagg caagattcct tcagacggca
     7921 tctgcacggt caaaatctgg cagaaaaaca tcggcaaaac cattattgcc catgtaccga
     7981 tgcaaaacgg cgcagttttg gaaacaggcg attttgagct cgacggcgta acgttcccgg
     8041 cagccgaagt acaaatcgaa tttcttgatc cagccgacgg tgaaggcagt atgttcccaa
     8101 ccggcaattt ggtcgatgaa attgatgtgc cgaatatagg ccgtttgaaa gccacgctca
     8161 tcaacgcggg cattccgacc gttttcctga atgccgccga cttgggctac acgggcaaag
     8221 agttgcaaga cgacatcaac aacgatgccg cggctttgga aaaattcgag aaaatccgcg
     8281 cttacggtgc gctgaaaatg ggtctgatca gcgacgtatc cgaagctgcc gctcgcgcgc
     8341 acacgccgaa agtcgccttc gtcgcgcccg ccgccgatta caccgcctcc agtggcaaaa
     8401 ccgtgaatgc cgccgacatc gatttgctgg tacgcgccct gagcatgggc aaattgcacc
     8461 acgcgatgat gggtaccgcc tctgttgcca ttgcgaccgc cgccgccgtg cccggtacgc
     8521 tggtcaacct tgccgcaggc ggcggaacgc gtaaagaagt gcgcttcggg catccttccg
     8581 gcacattgcg cgtcggtgca gccgccgaat gtcaggacgg acaatggacg gccaccaaag
     8641 cggttatgag ccgcagcgca cgcgtgatga tggaaggttg ggtcaggatg ccggaagatt
     8701 gtttttaaat tgacgtagca tgggtttgcc cgcgagccat aaacaggtcg tctgaaaaac
     8761 aagtaaacat caaatcactg accattcctt tcccttgccc tgtggcggaa ggcggcaaat
     8821 cacaaggaag aacacggaaa ccccgataaa agacagcttc ccgtattacc gtcattcccg
     8881 cgcaggcggg aatctagacc tgtcaatatg gaggattggt aggggaaaac aggtttcgtg
     8941 agttctacat tctggattcc cgccacagcc tgtcctcgcg taggcgggga cggaataacg
     9001 atagaaaatg cggcatacgc tttgcccaaa gaggccgtct gaaacacctt gcgcctgatg
     9061 tctgcctttt tcagacgacc ccacaccaaa aaaacaacca caaactacaa ggagaaacat
     9121 catgtccgac caactcatcc tcgttctgaa ctgcggcagt tcatcgctca aaggcgccgt
     9181 tatcgaccga aaaagcggca gcgtcgtcct aagctgcctc ggcgaacgcc tgaccacgcc
     9241 cgaagccgtc attacgttca acaaagacgg caacaaacgc caagttcccc tgagcggccg
     9301 aaattgccac gccggcgcgg tgggtatgct tttgaacgaa ctggaaaaac acggtctgca
     9361 cgaccgcatc aaagccatcg gccaccgcat cgcccacggc ggcgaaaaat acagcgagtc
     9421 tgttttgatc gaccaggccg taatggacga actcaatgcc tgcattccgc ttgcgccgct
     9481 gcacaacccc gccaacatca gcggcatcct tgccgcacag gaacatttcc ccggtctgcc
     9541 caatgtcggc gtgatggata cttcgttcca ccaaaccatg ccggagcgtg cctacactta
     9601 tgccgtgccg cgcgagttgc gtaaaaaata cgctttccgc cgctacggtt tccacggcac
     9661 cagtatgcgt tacgttgccc ctgaagccgc acgcatcttg ggcaaacctt tggaagacat
     9721 ccgcatgatt attgcccact taggcaacgg cgcatccatt accgccatca aaaacggcaa
     9781 atccgtcgat accagtatgg gtttcacgcc gatcgaaggt ttggtaatgg gtacacgttg
     9841 cggcgacatc gatccgggcg tatacagcta tctgacttcc cacgccggga tggatgttgc
     9901 ccaagtggat gaaatgctga acaaaaaatc aggtttgctc ggtatttccg aactttccaa
     9961 cgactgccgc accctcgaaa tcgccgccga cgaaggccac gaaggcgcgc gcctcgccct
    10021 cgaagtcatg acctaccgcc tcgccaaata catcgcttcg atggctgtgg gctgcggcgg
    10081 cgttgacgca ctcgtgttca ccggcggtat cggcgaaaac tcgcgtaata tccgtgccaa
    10141 aaccgtttcc tatcttgatt tcttgggtct gcacatcgac accaaagcca atatggaaaa
    10201 acgctacggc aattcgggca ttatcagccc gaccgattct tctccggctg ttttggttgt
    10261 cccgaccaat gaagaactga tgattgcctg cgacactgcc gaacttgccg gcatcttgta
    10321 gccaaaaaag ggacgagtcc gcaaaaatgc cgtctgaaat tttcagacgg cattttgttt
    10381 ggcgtttggg cgtacaatac ggaaaacatg acgataagga aacaaaccat ggcacagttt
    10441 ttcgccgttc atcccgacaa cccccaagaa cgcctcatca agcaggcggt cgaaatcgtc
    10501 aataaaggcg gcgtggtcgt ttatccgacc gattcctgtt atgccttggg ctgcaaactc
    10561 ggcgataagg cggcgatgga acgcatactc tccatccgca aaatcgattt gaaacaccac
    10621 ctgaccctga tgtgcgcaga tttgagcgag ttgggcacat acgccaaagt cgacaacgta
    10681 cagtttcgtc agcttaaagc cgccacaccc gggccttata cttttatttt acaggcgacg
    10741 aaggatgtgc cggcgcgcac gctgcacccg aaacgcaaaa ccatcgggct gcgtattccc
    10801 gataatgcca ttgcacaagc cctgctgggg gaattgggcg agccgctttt aagctgcacc
    10861 ctgatgctgc ccgaagacgg cgaaccattg accgatcctt atgaaatccg cgagcgtttg
    10921 gaacacgccg tcgatttggt gattgacggc ggctggtgcg gaaccgagcc gaccaccgtc
    10981 gtcgatatga ccgacggcac ggaattggtg cgccaaggtt gcggcgatac ggcggtgttc
    11041 ggtttgtagg gaaaccgatg ccgtctgaag catcggctgt tcagacggca ttgcgcgcct
    11101 tgccggcggc agtccgaaat gccggcgcgt atcgcgctcg gtcggaatat ccgtttgaaa
    11161 cggcattttg atgcattact gcaccgcaat cggaattctc ggttcgtaga gcaggtcgta
    11221 ggtcggcttg ttgagcaggt cttggagcgt gaaaccgtcc agatacgtga aaaacgactt
    11281 catcgcgccg ccgagtatgc ccgtcagccg gcaggacggt gtaatcaggc attcgttgtt
    11341 ctcgcccatg cactcgacca gctgcatcgg ttcgaggtgg cggacaaccg agccgatgtt
    11401 gatgcggtcg ggcggtgcgg caagccgcag accgccgcct tttccgcgca cactgtggag
    11461 gaagccgcct ttgaccagcg cggtaacgac cttcatcaga tggcttttgg aaatgccgta
    11521 ggttacggcg atggtactga tgttgaccag cgcatcgtcg ttgatggcag tgtagataag
    11581 gacgcgcagc ccgtagtccg tatgttgtgt caaatacatg attttctcgg tatggattgt
    11641 tattcttatc ggtacggttt aaggttcacg gacaatacct taatggttga aaccctgtcc
    11701 gtcggggcgg tagaatgcag cctgtctgcg gcggtatgcc gtctgaaaca tccgcgctac
    11761 cgtttgataa tttgttattg taactcaaaa tcatgaaacc gttgaaacga catcccgccc
    11821 ttatcgggct ttcgcgtgac caccaccatt cgctttccct gtgcgtgcgt ctgttgcgga
    11881 cgccggaaga aaggcatcgg gacgaactcg aaccgcattt ttccgaattg gaaacccatt
    11941 ttcgcgaaga agaagccaag tttgccccaa tttggcagaa tgtcgccccc gaattgaaac
    12001 aacgtttcga gaaagaccac gcccgactgc ggcagatgat ggcaagcccc gaatacggta
    12061 acgcggcgtg gaataccgct tttgccacaa ccctgcgcga ccacgcgcgc tttgaagaac
    12121 gcgagctgtt tcccgccgcc gaaccgtttt tgccggcatg attccgtttt gcggcaaata
    12181 tattaatgat aaacaaggaa cacacatgaa atttaccaag caccccgtct gggcaatggc
    12241 gttccgccca ttttattcgc tggcggctct gtacggcgca ttgtccgtat tgctgtgggg
    12301 tttcggctac acgggaacgc acgagctgtc cggtttctat tggcacgcgc atgagatgat
    12361 ttggggttat gccggactgg tcgtcatcgc cttcctgctg accgccgtcg ccacttggac
    12421 ggggcagccg cccacgcggg gcggcgttct ggtcggcttg actatctttt ggctggctgc
    12481 gcggattgcc gcctttatcc cgggttgggg tgcgtcggca agcggcatac tcggtacgct
    12541 gtttttctgg tacggcgcgg tgtgcatggc tttgcccgtt atccgttcgc agaatcaacg
    12601 caattatgtt gccgtgttcg cgctgttcgt cttgggcggt acgcacgcgg cgttccacgt
    12661 ccagctgcac aacggcaacc taggcggact cttgagcgga ttgcagtcgg gcttggtgat
    12721 ggtgtcgggt tttatcggtc tgattggtac gcggattatt tcgtttttta cgtccaaacg
    12781 gttgaatgtg ccgcagattc ccagtccgaa atgggtggcg caggcttcgc tgtggctgcc
    12841 catgctgacc gccatgctga tggcgcacgg cgtgatgcct tggctgtcgg cggctttcgc
    12901 gtttgcggca ggtgtgattt ttaccgtgca ggtgtaccgc tggtggtata agcctgtgtt
    12961 gaaagagccg atgctgtgga ttctgtttgc cggctatctg tttaccggat tggggctgat
    13021 tgcggtcggc gcgtcttatt tcaaacccgc tttcctcaat ctgggtgtgc atctgatcgg
    13081 ggtcggcggt atcggcgtgc tgactttggg catgatggcg cgtaccgcgc tcggtcatac
    13141 gggcaatccg atttatccgc cgcccaaatc cgttccgttt gcgttttggc tgatgatggc
    13201 ggcaaccgcc gtccgtatgg ttgccgtatt ttcttccggc actgcctaca cgcacagcat
    13261 acgcacctct tcggttttgt ttgcactcgc gcttttggtg tatgcgtgga agtatattcc
    13321 ttggctgatt cgtccgcgtt cggacggcag gcccggttga gacaaaccgc cgcagatttc
    13381 gggtctgggc ggtttgcttt tcagacggca gggcggtcag ttgccgtcca gccagcggtc
    13441 gcgtgtggtt ttggcttctt caaaatagcg gtacagggct tcgcggtcgt cggcggtcag
    13501 gatgtctgcc aaaacgtcca actgtttgcc caagccttga accagttgca gcaggctgtc
    13561 tttgttggca atgcagatgt ccgcccacac ggcgggatga ccggaggcga tacgggtgaa
    13621 gtcccgaaag cccgtggcgg cgaatttcag atattcctgt ccgtcggggt ggtcgagaat
    13681 ctggtggaca taggcgaagg cggtcaggtg gggcatatgg gagacggcag cgaaaaccgc
    13741 gtcgtggcgt tgcgcgtcca tcgtataaat ttccgcaccg accgcgtgcc acagttcttc
    13801 taccaaggca atgccgtctg aatgttcgcc gccgtgtggc gtgatgatga gttttctgtg
    13861 gcggaacagc ccgaactgcg cggcttgcgc accgcttctg tccgaaccgg caatcgggtg
    13921 ggcggcgatg cagcggtgca ggcggtcggg cagacagcgg cggaaggctt cgatgaccga
    13981 agatttggtg ctgccgacat cggaaatcca agtgtgttcc ggcaaaacgg ggcgcagcgc
    14041 ggtcaaaatg gcgggaaagg tggcgacggg cgtggcaatc agtaccaagt ccgcaccgcc
    14101 gatgctgtcc gcgtcgatgg caacggacgc acggtcaatc acgccgcgtt ccaatgcacg
    14161 ttcgaggttg tcgcggtcgg tgtcgatacc ggtaacggtg cggacgagtc cctgcctttt
    14221 gaggtcgaga acgaacgaac cgccgatcag ccctacaccg atgagggcaa tatggttcaa
    14281 aatgggcatt tgtgtaaacg gttttcgcaa agtaccgtca tggtagccta tcggcggaat
    14341 atgccgcaag gtcggcagga aaaaggagaa gaaatggaca aaatcagagt tgccgccgtg
    14401 cagatggtgt cgggcgtgtc gccggaaacc aacgtcgccg ccatgaaacg cctggtcgca
    14461 cgggcggcgg agcagggtgt ggattgggtg ctgctgcccg aatattgggt gctgatgggc
    14521 gcaaacgata ccgacaaact cgcgcttgcc gagcctttgg gcggcggacg ctttcagacg
    14581 gcattgagcg aaacggcgaa agaatgcggc gtggtgctgt tcggcggaac cgtgccgctg
    14641 caaagccccg aggcgggcaa ggtcatgaat actttattgg tgtacgggcg cgacggcaaa
    14701 cggacggggc tgtaccacaa aatgcacctc ttcggctttt ccggtttggg cgaacgctat
    14761 gccgaagccg ataccatccg cgcgggcggg gatgtgccgc acttgtcggc agaaggcgtg
    14821 tcggtggcgg cgggcatttg ttacgatgtc cgctttcccg aatttttccg ccgccagctg
    14881 ccgtttgacg tattgatgct gcccgctgcg tttacgcaca cgacgggcaa ggcgcattgg
    14941 gagctgctgc tgcgcgcgcg tgccgtcgaa aaccaatgtt acgtcgtggc ggcggcacag
    15001 ggcggtttgc acgaaaacgg acggcgcacg ttcggacaca gcatgattgt cgatccgtgg
    15061 ggcgacgtgt tggacgtatt gcccgaaggc gaaggcgttg ttacggcaga catcgatgcc
    15121 aaccgcctga acagcgtccg caaccgcctg cccgccttga aataccgggt tttggatgcc
    15181 gtctgaaggt tcagacggca tcggtgccgg ggaatcagcg ggctgtagga tgggcttcag
    15241 cctgccattt ccatcaatcc cacatttcta ccgttttcat cgaatccatc gaatccgccc
    15301 ctttcgacga cccagtccta cgcaac
//
LOCUS       DAXIFS010000028        15205 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.028, whole genome shotgun sequence.
ACCESSION   DAXIFS010000028 DAXIFS010000000
VERSION     DAXIFS010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15205
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.028"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(275..2746)
                     /locus_tag="ACFOCA_000678"
     CDS             complement(275..2746)
                     /locus_tag="ACFOCA_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6987433.1"
                     /translation="MKKTCFHCGLDVPEHLHLTVRYENEDRETCCAGCQAVAQSIIDA
                     GLGSYYKQRTADAQKTELPPQEILDQIRLYDLPEVQSDFVETHGGTREAVLMLGGITC
                     AACVWLIEQQLLRTDGIVRIDLNYSTHRCRVVWDDGKIRLSDILLKIRQIGYTAAPYD
                     AQKIEAANQKERKQYIVRLAVAGLGMMQTMMFALPTYLYGGDIEPDFLQILHWGGFLM
                     VLPVVFYCAVPFYQGALRDLKNLRAGMDTPIAVAIIMTFIAGVYSLATNAGQGMYFES
                     IAMLLFFLLGGRFMEHIARRKAGDAAERLVKLIPAFCHRMPGYPAVQDVREAAVVKLQ
                     AGDVVLVKPGETIPVDGTVLEGSSAVNESMLTGESLPVAKMPSEKVTAGTLNTQSPLI
                     IRTDRTGGGTRLSHIVRLLDRALAQKPRTAELAEQYASSFIFGELLLAVPVFIGWTLY
                     ADAHTALWITVALLVITCPCALSLATPTALAASTGTLAREGILIGGKQAIETLAQTTD
                     IIFDKTGTLTQGKPAVRRISLLRGTDEAFVLAVAQALEQQSEHPLARAILNCRISDGS
                     VPDIAIKQRLNRIGEGVGAQLTVNGETQVWALGRASYVAEISGKEPQTEGGGSAVYLG
                     SQSGFQAVFYLTDPLKDSAAEAVRQLAGKNLTLHILSGDRETAVAETARALGVAHYRA
                     QAMPEDKLEYVKALQKEGKKVLMIGDGINDAPVLAQADVSAAAAGGTDIARDGADIVL
                     LNEDLRTVAHLLDQARRTRHIIRQNLIWAGAYNIIAVPLAVLGYVQPWIAALGMSFSS
                     LAVLGNALRLHKRGKMQSEKMPSEQ"
     gene            complement(2743..3921)
                     /gene="hflX"
                     /locus_tag="ACFOCA_000679"
     CDS             complement(2743..3921)
                     /gene="hflX"
                     /locus_tag="ACFOCA_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HFC6987434.1"
                     /translation="MTGRTGGNGSTQAQPERVMLVGVMLDKDGTGSSATRLNGFQTAL
                     AEAVELVKAAGGDSVRVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELT
                     PTQERNLEKELKCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHL
                     QSQRGGIGMKGPGETKLETDRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFA
                     LVGYTNVGKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDL
                     PHKLISAFSATLEETAQADVLLHVVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYN
                     KTDLLPSEEQNTGIWRDAAGKIATVRISVAENTGIDALREAIAEYCATAPNTDETEMP
                     "
     gene            complement(3926..5206)
                     /locus_tag="ACFOCA_000680"
     CDS             complement(3926..5206)
                     /locus_tag="ACFOCA_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HFC6987435.1"
                     /translation="MKSLFIRLLLLGSAAGVFYHTQNQSLPAGELVYPSAPQIRDGGD
                     ALHYLNRIRAQIGLHKLAHAPVLENSARRHARYLTLNPEDGHGEHHPDNPHYTAQKLT
                     ERTRLAGYLYNGVHENISTEEEAAESSDSDIRTQQRQVDGLMSAIYHRLSLLDRHTDE
                     AGAAFVRENGKTVLVFNQGNSRFERHCAQGRNQPEAGRKYYRNACHNGAVVYTDEAMP
                     AQELLYTAYPVGSGALPYFHGERPDPVPEYEITGNPASIDFSEAAGKITMKSFKLYQG
                     KNEIRPVRVLTAGNDPNGRLTAYQFALFPLKPLEYGTLYTAVFDYVRNGRRAQAKWQF
                     RTRKPDYPYFEVNGGETLAVRKGEKYFIHWRGRWCLEACTRYTYRQRPGSRLSIGRHE
                     AGGIVFSVDGMAGSRITLAPEGETERGVTLYLQD"
     gene            5208..5336
                     /locus_tag="ACFOCA_000681"
     CDS             5208..5336
                     /locus_tag="ACFOCA_000681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987436.1"
                     /translation="MPSSRRGNGVFYQNGKLANAVSDCRLPNRQTFPRADAEPDAV"
     gene            complement(5359..6084)
                     /locus_tag="ACFOCA_000682"
     CDS             complement(5359..6084)
                     /locus_tag="ACFOCA_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFC6987437.1"
                     /translation="METQNKPTVTDIDRPILVPPGGHKKVLLHSCCAPCSGEVMEAML
                     ASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGIPFIDKDDDYENDRKEWFAKAK
                     GMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSLGISRWKNMAQINDCGHRAA
                     APYDDVVYWDFNWRKGGGSARMIEISKRENFYQQEYCGCAYSLRDSNAHRKSQGRIPI
                     KLGVLYYGDESTQYEPAPIRVDK"
     gene            complement(6157..6834)
                     /gene="radC"
                     /locus_tag="ACFOCA_000683"
     CDS             complement(6157..6834)
                     /gene="radC"
                     /locus_tag="ACFOCA_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HFC6987438.1"
                     /translation="MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAV
                     DLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIV
                     LSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
                     ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVRSF
                     RQLGLMP"
     gene            6861..6983
                     /locus_tag="ACFOCA_000684"
     CDS             6861..6983
                     /locus_tag="ACFOCA_000684"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987439.1"
                     /translation="MPSETNVPTRQISEMPSEPDFRFRRHLYFKTVLRRFFQLD"
     gene            complement(6957..8306)
                     /gene="gshA"
                     /locus_tag="ACFOCA_000685"
     CDS             complement(6957..8306)
                     /gene="gshA"
                     /locus_tag="ACFOCA_000685"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HFC6987440.1"
                     /translation="MKLPMMSPEHSAQLQAFEAKILSNHAKIEAWFRTQWSVHRPPFY
                     GSVDIRNAGYKISSIDMNLFPGGFNNLNPNFIPLAAVAAQDAVQRACETAKSVLIIPE
                     NHTRNTFYLQNVYALGEILCSAGYEVRLGSLNPEVTEPTEFETALGDKILLEPLLRTR
                     DRVHLADGFSPCVVLLNNDLSAGIPDILKGISQTVLPPLHGGWTTRRKTNHFGAYNQV
                     AAEFAKLIGIDEWQINPYFEKIGGLDFQGREGEDALAEAVERVLAKIQAKYDESGITD
                     KPFVIVKADAGTYGMGVMSVKSADEVRGLNRKNRNKMAKVKEGLEVSEVIVQEGIYTY
                     ETLNSAVCEPVVYMMDRFVIGGFFRVHEGRGADENLNAGGMVFVPLSNSIPTGNGDNS
                     QEAPEACKRVFEQWDSLGMPRSEKDCDVDNEHNRLYVYGVMARLSLLAASIELEETA"
     gene            8566..9975
                     /gene="leuC"
                     /locus_tag="ACFOCA_000686"
     CDS             8566..9975
                     /gene="leuC"
                     /locus_tag="ACFOCA_000686"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HFC6987441.1"
                     /translation="MTAQTLYDKLWNSHVVREEEDGTVLLYIDRHLVHEVTSPQAFEG
                     LKMAGRKLWRIDSVVSTADHNTPTGDWDKGIQDPISKLQVDTLDKNIKEFGALAYFPF
                     MDKGQGIVHVMGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHTMATQCI
                     TAKKSKSMLIAVDGKLKAGVTAKDVALYIIGQIGTAGGTGYAVEFGGEAIRSLSMEGR
                     MTLCNMAIEAGARSGMVAVDQTTIDYVKDKPFAPEGEAWDKAVEYWRTLVSDEGAVFD
                     KEYRFNAEDIEPQVTWGTSPEMVLDISSKVPNPAEETDPVKRSGMERALEYMGLEAGT
                     PLNEIPVDIVFIGSCTNSRIEDLREAAAIAKDRKKAANVQRVLIVPGSGLVKEQAEKE
                     GLDKIFIEAGFEWREPGCSMCLAMNADRLTPGQRCASTSNRNFEGRQGNGGRTHLVSP
                     AMAAAAAVTGRFTDIRMMA"
     gene            10072..10326
                     /locus_tag="ACFOCA_000687"
     CDS             10072..10326
                     /locus_tag="ACFOCA_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987442.1"
                     /translation="MNKLFITALSALALSACAGTWEGAKQDTARNLDKTQAAAERAAE
                     QTGNAVEKGWDKTKEAVKKGGNAVGRGISHLGGKIENATE"
     gene            10388..11029
                     /gene="leuD"
                     /locus_tag="ACFOCA_000688"
     CDS             10388..11029
                     /gene="leuD"
                     /locus_tag="ACFOCA_000688"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFC6987443.1"
                     /translation="MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFD
                     EWRYLDHGEPGMDNSKRPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDY
                     GFRAVIAPSFADIFFNNCYKNGLLPIVLTEEQVDRLFKEVEANEGYQLSIDLAEQTLT
                     TPGGETFTFDITEHRKHCLLNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFNG"
     gene            11199..12468
                     /locus_tag="ACFOCA_000689"
                     /pseudo
     CDS             11199..12468
                     /locus_tag="ACFOCA_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223735.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
     gene            12484..13215
                     /locus_tag="ACFOCA_000690"
                     /pseudo
     CDS             12484..13215
                     /locus_tag="ACFOCA_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229413.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0090304 - nucleic acid metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
     gene            13249..14319
                     /gene="leuB"
                     /locus_tag="ACFOCA_000691"
     CDS             13249..14319
                     /gene="leuB"
                     /locus_tag="ACFOCA_000691"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFC6987444.1"
                     /translation="MTKHIAILRGDGIGPEIVAETVRVLDKLIAQGLDAGYEYAPLGG
                     EAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFA
                     NLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNT
                     MKYSESEIRRIAHVAFQSAQKRSKKVCSVGKANVLETTELWREIFEEIGKQYPDVELS
                     HMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLY
                     EPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTSD
                     IYEEGTKLVSCSEMGDAVLAAL"
     gene            14482..15045
                     /locus_tag="ACFOCA_000692"
     CDS             14482..15045
                     /locus_tag="ACFOCA_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFC6987445.1"
                     /translation="MKKIIFAALAAAAVGTASAATYKVDEYHANARFAIDHFNTSTNV
                     GGFYGLTGSVEFDQAKRDGKIDITIPVANLQSGSQHFTDHLKSADIFDAAQYPDIRFV
                     STKFNFNGKKLVSVDGNLTMHGKTAPVKLKAEKFNCYQRPMEKTEVCGGDFSTTIDRT
                     KWGVDYLVNVGMTKSVRIDIQIEAAKQ"
BASE COUNT         3663 a         4095 c         3895 g         3552 t
ORIGIN      
        1 tgccaccgtc atacacagag ccagtatttg gaaaaaaatg atccatattg acatcattat
       61 tccatttgtc gcataaatcc actttttaat tttttccaca ttaatataat ctcttattta
      121 ataaaatcaa aataaaaatc aaatgcctaa caattcgatc tcaaattttg aacgccaacg
      181 tgtttgagcg gtaacaatac atactttaag tttgcaatcc ttcatcgtct tatttttgtt
      241 ttcatcaact atacgtctaa agcaacgccg tccgtcattg ttcggacggc attttttcag
      301 actgcatttt cccccgtttg tgaaggcgca gggcgttgcc caaaaccgcc agcgaactga
      361 agctcatacc cagtgcggct atccacggtt ggacatagcc caaaacggca agcggtacgg
      421 caatgatatt gtacgcgccc gcccatatca ggttttgccg gataatatgg cgggtgcgcc
      481 gcgcctgatc gagcaggtgg gcgacggtac gcaaatcttc gttcaataac acaatgtccg
      541 cgccgtccct cgcaatatcc gtcccgcccg ctgcggcggc ggatacgtct gcctgcgcca
      601 aaacgggcgc gtcgttgatg ccgtcgccta tcatcagcac ttttttccct tctttttgca
      661 aggctttgac gtattccagc ttgtcctcgg gcatggcttg ggcgcggtag tgcgcgacac
      721 ccagggcacg ggcggtttcg gcaacggcgg tttcgcggtc gccgctgagg atgtgcaggg
      781 tcaggttttt gcctgccaac tgccgcaccg cctccgccgc gctgtctttc aaggggtcgg
      841 tcaggtagaa cacggcttgg aaaccgcttt gactgccgag gtaaaccgcg ctgccgccgc
      901 cttctgtttg cggttcttta cctgaaattt cggcgacata ggatgccctg cccaatgccc
      961 aaacctgtgt ttcgccgttg acggtcagtt gcgcgcccac gccttcgccg atgcggttga
     1021 ggcgttgttt aatagcgatg tcggggacgc tgccgtctga aatgcggcag ttgaggatgg
     1081 cgcgggcaag gggatgttcg gactgttgtt ctaaagcctg cgccaccgcg agaacaaagg
     1141 cttcgtctgt gcctctcaac aatgagatac ggcggacggc gggtttgcct tgggtcagcg
     1201 tgccggtttt gtcgaagatg atgtcggtgg tttgggcgag ggtttcgatt gcctgctttc
     1261 cgccgattaa aataccttcg cgcgccagcg taccggtaga agctgccagc gcggtcggcg
     1321 tggcaagcga taaggcgcag gggcaggtaa tgaccagcag ggcgacggta atccacaatg
     1381 cggtgtgcgc gtcggcgtac agcgtccagc cgatgaagac ggggacggca agcaggagtt
     1441 cgccgaatat gaaagacgag gcgtattgtt ccgccaactc ggcagtgcgc ggtttttgcg
     1501 ctaaggcgcg gtcgagcagg cggacgatgt gcgacagtcg cgtgccgccg ccggtgcggt
     1561 cggtgcgtat aatcaggggg ctttgcgtgt tgagtgtgcc ggcggttact ttttcagacg
     1621 gcattttggc gacgggcagg ctctcgccgg tcagcataga ttcgttgacg gcactgcttc
     1681 cttccagcac cgtgccgtca acggggatgg tttcgcccgg tttgaccagt accacatcgc
     1741 ctgcttggag cttgacgacg gcggcttcgc ggacatcctg tacggcagga tagccgggca
     1801 tccggtggca gaaggcgggt atcagtttca ccagcctttc ggcagcatcg cctgccttgc
     1861 gccgggcaat gtgttccata aagcgtccgc ccagcaggaa aaacagcagc atggcgatgg
     1921 attcgaaata catcccctgc cccgcattgg tcgcaaggct gtaaacgccg gcgataaagg
     1981 tcatgatgat ggcgacggca atcggcgtat ccatgccggc gcggaggttt ttcaggtcgc
     2041 gcaacgcgcc ttgataaaac gggacggcgc aatagaatac gacgggcagc accattaaaa
     2101 agccgcccca atggaggatt tgcaggaaat cgggttcgat gtcgccgccg taaaggtagg
     2161 tcggcagcgc gaacatcatc gtctgcatca tccccagccc ggcaacggcg aggcggacga
     2221 tgtattgttt tcgttctttt tggttggcgg cttcgatttt ttgcgcgtca tagggtgcgg
     2281 cggtgtagcc tatctgcctg attttcaaca gaatgtcgga aaggcggatt ttgccgtcgt
     2341 cccagacgac gcggcagcgg tgcgtgctgt aattgaggtc gatgcggacg atgccgtctg
     2401 tacgcaaaag ctgctgttcg atcagccaga cgcaggcggc gcaggtgatg ccgccgagca
     2461 ttaaaaccgc ctcgcgcgtg ccgccgtggg tttccacaaa gtcggactgg acttcgggca
     2521 ggtcgtacag gcggatttgg tcgaggattt cttggggcgg cagctcggtt ttttgcgcgt
     2581 cggcggtgcg ttgtttgtaa taactgccca agcccgcgtc aataatgctt tgtgcgaccg
     2641 cctgacaacc ggcgcagcag gtttcgcggt cttcgttttc gtaacggaca gtcaggtgga
     2701 ggtgttcggg aacatccaga ccgcagtgga aacaggtttt tttcatggca tttcggtttc
     2761 gtctgtgttt ggtgcggtgg cacaatactc ggcaatggct tcgcgcagtg cgtctatacc
     2821 ggtattttca gcaacggaaa tgcggacggt ggcaattttt cccgcagcgt cgcgccatat
     2881 gcccgtgttt tgttcttcag acggcagcag gtcggttttg ttgtacacct tgatgcacgg
     2941 aatatcgccg gcatggattt cttgcagtac gttttccacg tcttcaatct gctgtccgct
     3001 gttcggggcg gcggcatcga cgacgtgcag cagcacatcg gcttgcgcgg tttcttccag
     3061 cgtggcggaa aatgccgaaa tcagtttgtg cggcaaatca ctgacgaatc cgacggtatc
     3121 ggtcaggata atgctgcatt cgggactgat gtacagccgc cgcgccgtgg tgtcgagtgt
     3181 ggcgaaaagc tggtctttcg catatatgcc cgacttggtc agccggttga acaggctgga
     3241 tttgccgaca ttggtatagc cgaccagcgc aaacgttttg attgtgcccg attcgcgggg
     3301 cttgcggcgc agggcgcgct gttttttgag gttgacaagc tgttttttca aggcattgat
     3361 ccgatgggcg atcaatcggc ggtcggtttc cagtttggtt tcgccggggc ctttcatgcc
     3421 gataccgccg cgctggctct gcagatggcc gtaaccgcgt atcaagcgtc ccgccaaatg
     3481 gctcaattgc gccaactcga cttgcagcct gccttcctgc gtgcgggcgc ggcgggcgaa
     3541 aatcgccaga atcagcccta ccctgtccaa tacgcggcat ttcagttctt tttcaaggtt
     3601 gcgttcctgc gtgggcgtga gttcgtggtt gaatacgacc aaatcgatgc cgtctgcggc
     3661 aactgcttct gacagctccg ccgccttgcc cgtgccgaca aacagcgcgg tgtgcggacg
     3721 gtcgcgtttg gcagtctcca cgcgcacgga atcgccgccc gccgctttga ccagctcgac
     3781 agcttccgcc aatgccgtct gaaaaccgtt cagacgggtg gcactgctgc ccgtaccatc
     3841 tttgtccaac attacgccca ccagcatgac gcgttcgggt tgcgcttggg tactgccgtt
     3901 gccgcctgtt ctgcctgtca tgtattcaat cctgtaaata aagggttacg cctcgttccg
     3961 tttctccttc cggtgcaagc gtgatgcggc tgcccgccat tccgtcaacg ctgaagacga
     4021 tgccgcccgc ctcgtgcctt cctatggaca ggcggctgcc gggtcgctgc cggtaggtat
     4081 aacgggtaca cgcttccaaa caccagcgtc cgcgccagtg gatgaaatat ttttcgcctt
     4141 ttctaaccgc aagtgtctcg ccgccgttta cctcaaaata agggtaatcg ggttttcggg
     4201 ttctaaactg ccatttcgcc tgcgcgcgcc gtccgttgcg gacatagtcg aataccgccg
     4261 tataaagcgt gccgtattcc aaaggcttga gcggaaaaag cgcgaattgg tacgcggtca
     4321 gcctgccgtt ggggtcgttg ccggcggtta aaaccctgac ggggcggatt tcgtttttac
     4381 cctgatacag cttgaaactt ttcatcgtaa ttttgcctgc cgcctcggaa aaatcaatgc
     4441 tggcaggatt gcccgtgatt tcatattccg gcacggggtc tggacgctcg ccgtggaaat
     4501 aaggcagtgc gccgctgccg acgggatagg ctgtatagag cagctcctgt gcgggcatgg
     4561 cttcgtcggt gtacacgacc gcaccgttat ggcaggcgtt gcggtaatat ttccgtcctg
     4621 cttccggctg atttctgcct tgggcgcaat gccgctcaaa cctgctgttg ccctgattga
     4681 atacgagaac ggttttaccg ttttcgcgca caaatgccgc tcctgcctca tccgtatggc
     4741 ggtcaagtag ggaaaggcgg tggtagattg cgctcattaa tccgtccact tggcgttgct
     4801 gcgtgcggat gtcgctgtcg gacgattcgg cggcttcctc ttccgtgctg atgttttcat
     4861 gcacgccgtt gtagagatac ccggcaaggc gtgtgcgttc ggtcagcttt tgtgcggtgt
     4921 agtgcggatt gtcgggatgg tgttcgccgt gtccgtcttc gggattgagc gtgagatagc
     4981 gtgcgtgcct gcgggcggaa ttttccaaaa ccggcgcgtg tgccagcttg tgcaaaccga
     5041 tttgggcgcg gatgcggttg aggtagtgca gcgcatcgcc gccgtccctg atttgcggtg
     5101 cggacggata gacaagttcg cccgcgggca gggattggtt ttgggtatga tagaaaacgc
     5161 ctgccgccga acccaacagg agcagccgaa taaaaaggga tttcataatg ccgtcctccc
     5221 gacgcggcaa cggggtgttt tatcaaaacg gcaaacttgc caatgcggtt tccgattgca
     5281 gattgccaaa ccggcaaacc tttccccgtg ccgatgccga acctgatgcc gtctgaacct
     5341 tcagacggca tcggatgttt atttgtccac ccggatgggt gcaggttcat attgtgtcga
     5401 ttcgtcgccg taatacagca cgccgagttt gatggggatt ctgccctgcg atttgcggtg
     5461 ggcattggaa tcgcgcaagg aataggcgca accgcaatat tcctgctggt agaagttttc
     5521 acgtttgctg atttcaatca tgcgcgcgct gccgccgcct ttgcgccagt tgaaatccca
     5581 atacaccaca tcatcgtaag gcgcggcggc gcggtgtccg cagtcgttga tttgcgccat
     5641 atttttccag cgtgaaatgc ccagcgaact ggtaaagacg gggaacccgt gttcatgcgc
     5701 gtattgcgcc gccttttcaa aacgcatatc gaaacacatg gtgcagcgga tgccgcgttc
     5761 cggctcaaac tccatgcctt tggctttggc aaaccattct ttgcggtcgt tttcgtagtc
     5821 gtcgtcttta tcgatgaaag gaatgccgaa cttttccgca aagcgcacgt tttcctcttt
     5881 tcggagcata tactctttgt gcggatggat attgggattg taaaaataaa tggtgtagtc
     5941 gatgccggag gcaagcatcg cctccatcac ttcgccgctg cacggggcgc agcaggaatg
     6001 cagcaagact tttttatgtc cgccgggcgg gacgagtatg gggcggtcaa tgtcggtaac
     6061 ggtaggtttg ttttgtgttt ccattaactt aacaatatct gttgaatacg gttgaagcgg
     6121 ctattttatc agagccgccg catgtaaaac agagtgtcag ggcatcaacc cgagctgtct
     6181 gaacgaacgg acgctttgcg aggtaacgat aaaatggtcg agcagcgaca catcgaccag
     6241 cgacattgcc tgtgccagcc gccttgtgaa catgatgtct tcctgcgaag gttcgggcga
     6301 gccgcccgga tggttgtgcg cgataatcag gctgtcggca tattcgtcca atgccagttt
     6361 gacgatttcg cggatgtaaa tcgtgttttc cgcaaccgta ccgcgcgaca gctctctgac
     6421 cgcaatcagt tggttttggc ggttcagcag cagcgcgacg ctgacttcga ctttttcctg
     6481 ccccaaatga aagcgtaaat aatcggccac cgtatccgga tcggacagga cgatgctctc
     6541 ctgcaattct tccgccaata tccgccgccc gatttccctg accacggcaa actgtgtgaa
     6601 acttgccgtc cccatccctt tgtatgccga cagtttgccg acctccgcgc tcatcagcct
     6661 ccccaaactg ccgaactcct gcagcaaata acgcgccaaa tcaaccgcac tcattccgcg
     6721 cgtgccgacg cgcagcagga ttgccaaaag ttcggcatca ctcaaagccg ccgccccgcg
     6781 ttccaacagc ttttccctgg gcctttcccc ctccggccat tgcttgatgc tcatgttttc
     6841 ccttttttaa atagtctgag atgccgtctg aaacaaatgt tcccacacgc caaatatccg
     6901 aaatgccgtc tgaaccggat ttccgcttca gacggcatct gtatttcaaa acagtcttac
     6961 gccgtttctt ccaactcgat tgaagccgcc agaagcgaca ggcgtgccat tacgccgtaa
     7021 acgtagaggc ggttgtgttc gttgtccacg tcgcagtctt tttcagagcg cggcataccc
     7081 agcgagtccc attgttcgaa tacgcgcttg caggcttcgg gcgcttcttg ggaattatcg
     7141 ccgttaccgg taggaatgct gttagacagc ggaacaaaca ccataccgcc ggcgttgagg
     7201 ttttcgtccg caccgcgccc ttcgtgtacg cggaaaaagc cgccgatgac gaagcggtcc
     7261 atcatataca cgacgggttc gcacaccgcg ctgtttaagg tttcataagt ataaatccct
     7321 tcttggacaa tcacttcgct gacttccaaa ccttctttga ctttcgccat tttattgcgg
     7381 tttttacggt tcaatccgcg cacttcgtcg gcggatttga cgctcatcac gcccatgccg
     7441 taagtgccgg catcggcttt gacgatgacg aaaggtttgt cggtaatgcc cgattcgtcg
     7501 tatttggctt gaattttcgc cagcacacgt tctaccgcct ccgccaacgc gtcttcgcct
     7561 tcacgccctt ggaagtccaa accgccgatt ttttcaaaat aagggttaat ttgccattcg
     7621 tcgatgccga ttaacttggc aaattcggcg gcaacttggt tgtacgcgcc gaaatgattt
     7681 gttttgcggc gcgtcgtcca accgccgtgc aacggcggca aaacggtttg gctgatgcct
     7741 ttgaggatgt cgggaatacc ggcggacaaa tcgttgttca acaaaaccac gcaaggcgaa
     7801 aagccgtctg caagatggac gcggtcgcgg gtacgcaata aaggttccaa caggattttg
     7861 tcgcccaatg cggtttcaaa ttcggtcggt tcggttactt ccggattcag gctgcccaag
     7921 cgcacttcat accctgccga acacaaaatc tcgccgaggg cgtaaacgtt ttgcaggtaa
     7981 aacgtattgc gcgtgtggtt ttcgggaata atcaatacgg atttcgccgt ttcacaggcg
     8041 cgttgcaccg catcttgcgc ggcaaccgcc gccagcggga taaagttggg attcagatta
     8101 ttgaagccgc cggggaacaa attcatatcg atagacgaaa ttttgtaacc ggcattgcgt
     8161 atatcgaccg aaccgtaaaa cggcgggcgg tgtacgctcc actgcgtgcg gaaccacgcc
     8221 tcgattttgg cgtgattgga caggattttt gcctcaaacg cctgaagttg cgccgaatgt
     8281 tcgggcgaca tcatcggtaa tttcatcttt cgtctgcctc tgtgtgtttt ttgacaagat
     8341 gcagatgata atgcctttga aagaatgacg acaagtattc tttcgtatcg aatcatgctt
     8401 tagatataac tgtttactga aatggacaat atgtctaatt ttttcgttaa aattgtttgc
     8461 aaaataacac cggctcaaaa attagacaaa atttgttgcg cggtataaag aatacgtcta
     8521 aaatccgccc aatccgcatt accatttatc caaaagaaca acatcatgac agcacaaacc
     8581 ctctacgaca aactttggaa cagccacgtc gtccgcgaag aagaagacgg caccgtcctg
     8641 ctctacatcg accgccattt ggtgcacgaa gttaccagcc ctcaggcatt tgaaggcttg
     8701 aaaatggcgg ggcgcaagct gtggcgcatc gacagcgtcg tctccaccgc cgaccacaac
     8761 accccgaccg gcgattggga caaaggcatc caagacccga tttccaagct gcaagtcgat
     8821 actttggaca aaaacattaa agagtttggc gcactcgcct attttccgtt tatggacaaa
     8881 ggtcagggca tcgtacacgt tatgggcccc gaacaaggcg cgaccctgcc cggtatgacc
     8941 gtcgtctgcg gcgactcgca cacttccacc cacggcgcat tcggcgcact ggcgcacggc
     9001 atcggcactt ccgaagtcga gcacacgatg gcgacccagt gcattaccgc gaaaaaatcc
     9061 aaatccatgc tgattgccgt tgacggcaaa ttaaaagcgg gcgttaccgc caaagacgtg
     9121 gcactttaca tcatcgggca aatcggcacg gcgggcggta caggctacgc cgtcgagttt
     9181 ggcggcgaag ccatccgcag cctttctatg gaaggccgca tgactttatg caatatggcg
     9241 atcgaagccg gtgcgcgctc aggcatggtt gccgtcgacc aaaccaccat cgactatgta
     9301 aaagataaac ccttcgcacc cgaaggcgaa gcgtgggaca aagccgtcga gtactggcgc
     9361 acgctggtgt ctgacgaagg tgcggtattc gacaaagaat accgtttcaa cgccgaagac
     9421 atcgaaccgc aagtcacttg gggtacctcg cctgaaatgg ttttagacat cagcagcaaa
     9481 gtgccgaatc ctgccgaaga aaccgatccg gtcaaacgca gcggtatgga acgggccctt
     9541 gaatacatgg gcttggaagc cggtacgcca ttaaacgaaa tccccgtcga catcgtattc
     9601 atcggctctt gcaccaacag ccgcatcgaa gacttgcgcg aagccgccgc catcgccaaa
     9661 gaccgcaaaa aagccgccaa cgtacagcgc gtgttaatcg tccccggctc cggtttggtt
     9721 aaagaacaag ccgaaaaaga aggcttggac aaaattttca ttgaagccgg ttttgaatgg
     9781 cgcgaaccgg gctgttcaat gtgtctcgcc atgaacgccg accgcctgac cccggggcaa
     9841 cgctgcgcct ccacctccaa ccgcaatttt gaaggccgtc aaggcaacgg cggacgtacc
     9901 cacctcgtca gccccgctat ggcagccgcc gccgccgtta ccggccgctt taccgacatc
     9961 cgcatgatgg cgtaagtatt ttcaggcggt ctttaagaat ttgacgcggc cgtctgaaat
    10021 atgtcccgta aggcagaaac acctttaata ttcaaaccaa ggagtttaac catgaacaaa
    10081 cttttcatta ccgccctgtc cgccctcgcc ttgtccgcct gcgccggcac ttgggagggc
    10141 gcgaaacaag acaccgcccg caaccttgac aaaacacagg ccgccgccga acgcgccgcc
    10201 gaacaaacag gcaacgccgt cgaaaaaggc tgggacaaaa ccaaagaagc cgtcaaaaaa
    10261 ggcggcaatg ccgtcggacg cggcatttcc catctcggcg gaaaaatcga aaacgccacc
    10321 gaataaccga ttcgcgatgc cgtctgaaac cgcttcagac ggcatcgtca gcacaagacg
    10381 caaacccatg aaagccttta ccaaaattac cgccatcgtc gccccgctcg accgcagcaa
    10441 cgtcgatacc gacgccatca tccccaaaca atttctgaaa tccatcaaac gcagcggttt
    10501 cggccccaat gcctttgacg aatggcgtta cctcgaccac ggcgaaccgg gcatggacaa
    10561 cagcaaacgc ccgttgaacc ctgatttctc gctgaaccag ccgcgttacc aaggcgcgca
    10621 aatcctgttg acgcgtaaaa acttcggttg cggctcttca cgcgaacacg ccccttgggc
    10681 attggacgac tacggcttcc gcgccgtcat cgcccccagc ttcgccgaca tcttcttcaa
    10741 caactgctac aaaaacggcc ttttacctat cgtgttgacc gaagaacaag tcgatcggct
    10801 tttcaaagaa gttgaagcca acgaaggcta tcagctctcc atcgaccttg ccgaacaaac
    10861 cctgaccacc cctggcggcg aaacattcac attcgacatt accgaacacc gcaaacactg
    10921 cctcttaaac ggcttggacg aaatcggact gaccctgcaa catgccgatg aaattcacgc
    10981 ctttgaagaa aaacgccgcc aaagccagcc ttggctgttt aacggttaaa acctatgccg
    11041 tctgaaggcc gttcagacgg catttctgat aacatataat tgctgcaact gatgtaaaca
    11101 gagggattat caattgcttt catctttcaa gcgggcttag caacgctcta aattaatgca
    11161 atacaactct atttcaaata aatttttaga tttttaatat gcaacaaatt aaatttattg
    11221 acttattttc cggaatgagt ggcatcagga aaggattcga acaagcctgt cggaaacagt
    11281 cggttgcttg cgaatgtgtt tttacttcag aaatcaaacc ggcagctttg gaagtattga
    11341 agcaaaacta ccctgatgaa gtgccgtatg gagacataac gaaaattgaa acaggggata
    11401 ttcccgattt tgacattctg ttggcaggct tcccttgtca ggctttttct ttcgccggaa
    11461 aaagattggg ctttgaagat acacggggaa cgcttttctt tgatgtggca aggattttaa
    11521 aagcaaaaaa accaaaaggt tttattttgg aaaatgtgga aggattggtg acacacgata
    11581 gaaaagattc gacacaaaaa tagggcgcac cctgaccgtt attttggaaa ccttggaagc
    11641 attgggctac tatgtttctt ggaaagtttt aaatgcaaaa gatttcggca ttccccaaaa
    11701 caggaagcgc atttatctga caggcagttt gaaatccaaa cccgacttat ctttcgaaac
    11761 aagcccaagt ccgaaattaa aaaatatttt ggaatcggga ctgcctactg aaagcagccc
    11821 tttcatcaag aaattgctaa aaaaatttcc cccgtccgaa ctgtacggaa aatcagtaaa
    11881 agacaaacgg ggagggaaaa acaatattca cagttgggat attgaattaa aaggcgcagt
    11941 aaccgaagaa gagaagcaat tgttaaatat ccttctaaaa gaacggagga aaaaaaatgg
    12001 gcttcagaaa tcggcataga ttggatggat gggatgcctt tgacaaaagc gcaaatttca
    12061 actttctata aacaccccga tctccaaaat attttggaca gcctgacaga taaaggctat
    12121 ttggttttag agcatccgaa acaaaaaatt ggcgggcaaa gaatcaaaga tgaatccctg
    12181 cccaaaggct acaatattgt ttcaggtaaa aaatcttttg aaatcaataa aatattagat
    12241 ccaaacgatg ttgcgccaac cttggttgca atggatatgg agcacctttt cgtcgttgac
    12301 aacggcggtt tgcgtacact taccggaaaa gaagggttgc gcttattcgg ctatccggac
    12361 gattattcgt ttgatattcc caaaaaagac agatgcgatt tattgggtaa taccgttgcc
    12421 gtccctgtga ttaaggcggt atctgaaaga cttctgcata ctttataaac cgacagggat
    12481 aaaatgataa aacttactgc acaacaaata tttgataagt tgctggatga agaaaaaatc
    12541 ttatcggcca atggtcaaat tagatttttc ttgggcgatg tggatattat cgtcaaacaa
    12601 aaagatgttg tcggcaacat cattcaggaa tggctcggcg gatgattgag aaaaagggaa
    12661 attgaatttg atgtttcaac caatacccaa atgcctcccg atttcttttt aaataaaaaa
    12721 gaccgcagca gagaattgtt ggaagtaaag gcgttcaacc gaaataccgg cccgggtttt
    12781 gatattgcag attttaaaat gtattctgat gaaatcattc ataagcccta tatgctggat
    12841 gtagactatt taatattcgg ttacgatatg gacgacaacg gcaatgtaac catcaaggat
    12901 ttatggctta aaaaagtatg gcaaattacg agaagcatgg atgggtgggc aattaatctt
    12961 caagtcaaaa aaggcgtggt gcataaaatc cgcccgggtg tttggtacag cataaataaa
    13021 aagaatatgc ctatgtttga atgcttggaa gattttgttt ccgcaattga agaaaccgtt
    13081 tatcaaaacc cggcaacacg gcataacgca tccttatgga aaaagaaatt tgaggaagcc
    13141 tataaaaaac actacaaccg atcgatttcc atacctcgtt ggcacgaaat tgcacacaaa
    13201 tacaaaaaga aataaccctt caaccatcaa cccataagga aacttgaaat gaccaaacat
    13261 atcgccatcc tccgaggtga cggcatcggt cccgaaatcg tcgccgaaac cgtccgcgta
    13321 ctcgacaaac tcatcgccca aggtttggat gccggctacg aatacgcccc attgggcggc
    13381 gaagcctatg acgaatacgg tcatccttat cccgaattta cgcaaaacct ctgccgcaaa
    13441 gccgatgccg tcctgcttgg tgcagtcggt tctcctcaat acgacaacct cgaccgtccg
    13501 ttgcgccctg agcgcggcct gttggcaatc cgtaaggatt tgaacctgtt tgccaatttg
    13561 cgtcctgctg ttttatatcc cgaattagcc aacgcctcca cgctgaagcc tgaaatcgtt
    13621 gccggtttgg atattttgat tgtgcgcgaa ctcaccggcg acatctattt cggcgaaccg
    13681 cgcggcatcc gcgttctgga aaacggcgaa cgcgaaggct acaacaccat gaaatacagc
    13741 gaaagcgaaa tccgccgtat cgcccacgtc gctttccaat ccgcccaaaa acgcagcaaa
    13801 aaagtctgct ccgtcggcaa agccaacgtt ttggaaacca ccgaactgtg gcgcgaaatt
    13861 tttgaagaaa tcggcaaaca ataccctgat gtcgagcttt cccatatgta tgtggacaat
    13921 gccgctatgc agttggtacg cgcgcccaaa caatttgacg tgattgccac cggcaacatc
    13981 ttcggcgata ttttatcgga cgaggcctct atgctgaccg gctccatcgg tatgctgcct
    14041 tctgcttctt tggacgaaaa cggcaaaggc ctgtacgaac cgtctcacgg ctccgctccc
    14101 gacatcgccg gacaaaacaa agccaacccg ctggccacca tcctctcgct cgcaatgttg
    14161 ctgcgttaca gcctgaacga cgaagcgcgc gcgcaacaag ttgaaaacgc cgtccaaaaa
    14221 gtgctgcaac aaggcttgcg taccagcgac atttacgaag aaggcacaaa actcgtttcc
    14281 tgctccgaaa tgggcgatgc ggtactcgcc gccttgtaaa aaaacaaagc gcggatcaca
    14341 ccgcgctttt tcatctgccc ttttccgctc gccccgttcg tcaaccgcct gcaaagccac
    14401 cgtttaccgg caggaaatgc cataaatccc cgcctatgtt aggataaacg cctttactgg
    14461 ctcacacaaa ggattatcat catgaaaaaa atcatcttcg ccgcactcgc agcggcagcc
    14521 gttggcactg cctccgccgc cacctacaaa gtggacgaat atcacgccaa cgcccgtttc
    14581 gccatcgacc atttcaacac cagcaccaac gtcggcggtt tttacggtct gaccggttcc
    14641 gtcgagttcg accaagcaaa acgcgacggt aaaatcgaca tcaccatccc cgttgccaac
    14701 ctgcaaagcg gttcgcaaca ctttaccgac cacctgaaat cagccgacat cttcgatgcc
    14761 gcccaatatc cggacatccg ctttgtttcc accaaattca acttcaacgg caaaaaactg
    14821 gtttccgttg acggcaacct gaccatgcac ggcaaaaccg cccccgtcaa actcaaagcc
    14881 gaaaaattca actgctacca acgcccgatg gagaaaaccg aagtttgcgg cggcgacttc
    14941 agcaccacca tcgaccgcac caaatggggc gtggactacc tcgttaacgt tggtatgacc
    15001 aaaagcgtcc gcatcgacat ccaaatcgag gcagccaaac aataaatctt gatgcgaatc
    15061 agcacaaatg ccgtctgaac gtccttcaaa cggcatttgt gccgtcttca tcaaaccgcc
    15121 ccgccaacgg taagccgata tggcggagca caatccgccg aaagatattt cagcggcagg
    15181 cagggcttgc cggaaagtcc ggaaa
//
LOCUS       DAXIFS010000029        14623 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.029, whole genome shotgun sequence.
ACCESSION   DAXIFS010000029 DAXIFS010000000
VERSION     DAXIFS010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14623
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.029"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(287..4456)
                     /locus_tag="ACFOCA_000693"
     CDS             complement(287..4456)
                     /locus_tag="ACFOCA_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HFC6987446.1"
                     /translation="MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLS
                     VLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEG
                     ADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPA
                     AVYLDRFETGKISMGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSAS
                     VGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHP
                     FAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENT
                     KAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLN
                     IGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPAN
                     GQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNING
                     SINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKT
                     DGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARN
                     LHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQH
                     RIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAG
                     AERVAASAANWQAMGGSLNLQHFSWDRKTGISAKGGARGLHIAELHNFFKPPFEHNLV
                     LNGDWDVAYGRNARGYLNINRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGA
                     RFGRINADLDIGNAFGGNMANAPLGGRITASLPDLGTLKPFLPAAAQNITGSLNAAAQ
                     IGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFL
                     PVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRK
                     WVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRY
                     SPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLN
                     DGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFV
                     GPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGS
                     GSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQ
                     LTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGRRSSGGELTYTIRFDRFSGSD
                     KKDSAGNGKGK"
     gene            complement(4511..6358)
                     /locus_tag="ACFOCA_000694"
     CDS             complement(4511..6358)
                     /locus_tag="ACFOCA_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex family protein"
                     /protein_id="HFC6987447.1"
                     /translation="MHDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFK
                     NKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAP
                     DNVKTMLHSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEY
                     YRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKAYPLAKLGNTRAAVNPDTATADL
                     NVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHY
                     SGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKG
                     YIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVR
                     DRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDG
                     KIGTTLGAFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNANVPSGLM
                     FRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDA
                     AANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF"
     gene            6770..7999
                     /gene="sstT"
                     /locus_tag="ACFOCA_000695"
     CDS             6770..7999
                     /gene="sstT"
                     /locus_tag="ACFOCA_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFC6987448.1"
                     /translation="MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLF
                     GSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGM
                     VFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGA
                     ALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKL
                     LAVLLGCMAFIALVVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMA
                     LAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAYTQGIQVDFATALLLSLVA
                     TVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTD
                     VLFTAAADLGRQRNRAE"
     gene            8111..9604
                     /locus_tag="ACFOCA_000696"
     CDS             8111..9604
                     /locus_tag="ACFOCA_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6987449.1"
                     /translation="MFKRSVIAMACIVALSACGGGGGGSPDVKSADTLSKPAAPVVTE
                     DVGEEVLPKEKKDEEAVSGAPQADTQDATAGKGGQDMAAVSAENTGNGGAATTDNPEN
                     KDEGPQNDMPQNAADTDSSTPNHTPAPNMPTRDMGNQAPDAGESAQPANQPDMANAAD
                     GMQGDDPSAGENAGNTADQAANQAENNQVGGSQNPASSTNPNATNGGSDFGRINVANG
                     IKLDSGSENVTLTHCKDKVCDRDFLDEEAPPKSEFEKLSDEEKINKYKKDEQRENFVG
                     LVADRVEKNGTNKYVIIYKDKSASSSSARFRRSARSRRSLPAEMPLIPVNQADTLIVD
                     GEAVSLTGHSGNIFAPEGNYRYLTYGAEKLSGGSYALSVQGEPAKGEMLAGTAVYNGE
                     VLHFHMENGRPSPSGGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAVIDGNGFKGT
                     WTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD"
     gene            complement(9680..9895)
                     /locus_tag="ACFOCA_000697"
     CDS             complement(9680..9895)
                     /locus_tag="ACFOCA_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987450.1"
                     /translation="MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGL
                     FVIILAALLVFGQYFSEKKMKDDGFIN"
     gene            complement(9888..10103)
                     /locus_tag="ACFOCA_000698"
     CDS             complement(9888..10103)
                     /locus_tag="ACFOCA_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HFC6987451.1"
                     /translation="MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVV
                     TMEKDLRRMLLFFKREAYVVILERDRV"
     gene            complement(10178..11521)
                     /gene="argG"
                     /locus_tag="ACFOCA_000699"
     CDS             complement(10178..11521)
                     /gene="argG"
                     /locus_tag="ACFOCA_000699"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFC6987452.1"
                     /translation="MSQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAY
                     TANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAY
                     FNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPW
                     LDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIK
                     IVKPIMGVAFWDENVEVSPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGL
                     GMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLL
                     YQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSM
                     EKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKK"
     gene            11646..12446
                     /locus_tag="ACFOCA_000700"
     CDS             11646..12446
                     /locus_tag="ACFOCA_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HFC6987453.1"
                     /translation="MNAFNLIIIGDEILHGSRQDKHFAFFKSLLESKGLKLNQVQYLP
                     DEPDLLVRQLRRSFSDGIPTFVTGGIGATPDDHTRQAAAAALELPVVRHPEAAGFIEG
                     ITQKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNIAGFSIREHYFFPGFPVMAHPM
                     AEWVLDTYYAGRFNQTQRGSRSVYVFEQPESRITPIMEHIEQTYPGVRSYSLPSVGWT
                     HSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN"
     gene            12486..13472
                     /locus_tag="ACFOCA_000701"
     CDS             12486..13472
                     /locus_tag="ACFOCA_000701"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HFC6987454.1"
                     /translation="MQYRIRRENEAPEAKNAGETLWERDMMREVLLSAYQDRRRERMW
                     KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKD
                     GMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASG
                     CYYIAAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFS
                     PETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLV
                     DGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKAGVREALQAVR"
     gene            14130..14392
                     /locus_tag="ACFOCA_000702"
                     /pseudo
     CDS             14130..14392
                     /locus_tag="ACFOCA_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(14430..>14623)
                     /locus_tag="ACFOCA_000703"
     CDS             complement(14430..>14623)
                     /locus_tag="ACFOCA_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987455.1"
                     /translation="RNSILPDLNLIPFASNGEWEAYFDGNDVTGNSRVIVINLDNIEN
                     HEFFNSFEDWLELAIKDTW"
BASE COUNT         3163 a         3697 c         4337 g         3426 t
ORIGIN      
        1 acctgtgtat cgctgtaaat cttagagatg gcggaatata gcggattaac aaaaaccggt
       61 acggcgttgc ctcgccttgg ctcaaagaga acgattctct aaggtgctca agcaccgagt
      121 gaatcggttc cgtactattt gtactgtctg cggcttcgtc gccttatcct gatttttgtt
      181 aattcactat atcgattctg ttcccttgca ggcggacggc ggcggcggac ggtggaaaag
      241 caggttttca aatgtccggt ttggcggcgc gccgtctgaa aaccgcttat tttcctttgc
      301 cgtttccggc ggagtctttt ttgtccgaac cggagaagcg gtcgaaacgt atggtgtatg
      361 tcagctcgcc gcccgacgaa cgtctgccga tacgggcaac cgcctgtatg gcgcgggtca
      421 gccggtaaat cagtttgacg gactgttccg cgctggagat gctgtattcg tagccgatgt
      481 agagtttgcc ggtcagttgt ttgccgacgg tcagcacctg ttcggcgggg ttgagttcgc
      541 cggtttgcgc gttgcggctg cgcttgctgg taaagcccaa atcatccacc agcccgatgc
      601 ggtcgttgat ttgcccggca agcagcgcgc ctgcggctgc ggacagggcg gcattgtcgc
      661 cgctgctgcc actgccggcg cggttgagga tgagccagga gagcttgtct ttttcactca
      721 tcggttcgtt tgccgtcagc gtaatgcgcg gactgttgag gctgcccaat atttccacgc
      781 ccgcaccgac gggggaaagg cggcgttcgg cgcggatgtt gaggttgggg tcgttgagcg
      841 ggccgacaaa ggagaccgtg cctttggtaa tgtccaaatc ctgcccgtat gccttataac
      901 gccctttgat gacgcggacc gtgcccacgc cccgcacgct tccgcccgat tgggcggtca
      961 gggtcagttt gccgcctatg gtaacgtccg cgccgtagcc ggcgaagcgg atgccgtcat
     1021 tgaggtctaa agtcaggttc atattgacgg ggagcggtgc cgccgcctct tttttaactt
     1081 cgcctaatac gacgacatcg tcgccgacgg acggcatcga ggatttttgc gaaccgaaca
     1141 gcccctgatc cgttttaatc atcccggtaa cggatatgcc tttttgcggc gaatagcgca
     1201 ggcgggtgtt gccggaaacc gtcaggcggc ggttagggcg ggacaggatg cggtatttgt
     1261 cgaacaccgc gccgatatcg acatcgggtc cgctgttttc cataccgacc gtgccggaga
     1321 gttccgccgt tccttcgtgc cggaatttca ggctgtcgat tacccatttt ctgcccgcga
     1381 tatgcgaacg cagcgagccg ttgtccaaga tgatgccttg ggtttggttg cggtaataga
     1441 gcttgtcgcc gttgatgctg ccgcccaagt gcgggtcggc gatgctgccg ccgagggtta
     1501 cggcggcatt caggctgcct ttgacggttt gtccgacggg caggaagttg cggaatactt
     1561 cggcatcggc aacggtcagg ttgagcctgc cgcccaaagg cgcggtatcg aaagagcggc
     1621 tttgcccgac ggtgatgttg ccgttgattt tcccgtagtt gctgctgccg ttgacggcgg
     1681 cattgacgga cggagagccg acccgtccgc cgatttgcgc ggcggcattc aggctgccgg
     1741 taatgttttg cgcggcggcg ggcagaaagg gcttcaatgt gcccaagtcg ggaagggagg
     1801 cggtaatcct gccgccgagc ggtgcatttg ccatattgcc gccgaaggcg ttgccgatgt
     1861 ccaaatcggc gttaatccgc ccgaaacgtg cgccgccgtc aagcaggatt ccgatacggt
     1921 cgttttgaaa gcgcgttttc agggaaaatg cgttcaaacc caaagcctgc ccgccgggca
     1981 atacggcatc gccgctttgc cgattgatat tgaggtagcc gcgcgcgttg cgcccgtagg
     2041 cgacatccca gtcgccgttt aaaaccagat tgtgttcgaa gggcggtttg aagaaattgt
     2101 gcaactcggc gatatgcaga cctcgtgcgc cgccttttgc cgatatgccg gttttcctgt
     2161 cccaggaaaa gtgttgcagg ttgaggctgc cgcccatagc ctgccaattt gccgcacttg
     2221 ccgccacacg ttccgcaccg gcttcgagcg tcatacggtt ttgcagtttt aggttgaatg
     2281 cgccgccgat gtcgaggatg ccgatgctgc ccttccatag ggtaagttcc ctgttgatgc
     2341 cgcctgaagc gtccaaatcg aatttgaacg gtttgccatc cagcgtcatg gcggcgtgtg
     2401 tgcggatgcg gtgctgcacg cccgtgccgt ccagcatcag gtcggcggta tcgacaaccg
     2461 ccgctccgcc cgacagcgaa aggcggctgc ctttgatgtc ggcgcgtatc gggcggcttg
     2521 tgtcgggcga acctttgagc gtgaaatcga gcgaacggat gtctgccgcc ttgccgatgt
     2581 gcaggttgcg cgccgcgccg gaaaggtcgg tttcaaaggt tcggatgccg ccgtccaaat
     2641 cgccggaaag gtgtccgcgt acatttaaag accccgcgag tccgaaaccg aaacgggata
     2701 aatcgggtgc ggtgatgttg aggttgagcc ggtcgccttt tttgccgaag ccgccgtctg
     2761 ttttaataat gttccgcccc agccgcaaat cgacggcggc acgcggaagg tggcgggact
     2821 cgtaaacaat gtcggcactg ccggcaatcg gtacgccgtt gaacgtgccg ggtaaaaacc
     2881 gcattttgcc tgtgaatttc tcttttgcca gttcgccggc aaggtttatt gagccgttga
     2941 tattgcctgc cggaagttgc ggattgatgc gcgaagggtc gaatgcgcgg gaacggatgt
     3001 ccagcttgag caggcggtct ttaaacagct cgagatagcc ttgcgcggtc aggctgcctt
     3061 gcccggcggc gatgttgacg gtgtcgagca ccagtttccg ctgtccgttt gcggggtcgc
     3121 ttgcaatggc gaggctgccg tccgtgcgcg ccgtgccgat gccgagttgc caagagattt
     3181 tgggcgaggc ggtcgtgcca ccgatgccga tgctgccgtc caacctgcct ttgaacgcgg
     3241 tttgcagtac gtcttccgcg ccgacggagt tgatgcctat atttaaatcg aggatgtctt
     3301 tttcggtgtc gattttgccc gacagcctga tgccgccccg tccgagcagg gcggcggacg
     3361 tattgccgat atgcaccgtg ccgtcctgcc ggatgacaaa gccgcctaaa acctgacgga
     3421 cggggatgcc gttgcggtcg gcaaagccgg ctttggtgtt ttccaaatcg agcgaacctt
     3481 ccagcgcgat gccgtctgaa aacgacggga tggcggtcag gtcgaaattc agcccggcat
     3541 cgggcaggga gggcacgaag gcggccgggt tgatgttgaa ccctttgacc agcacttctt
     3601 ccaatgtttt atccaatgat tcggcaaacg ggtggatgac ggattttccc gagaggcgga
     3661 tattgccgcc gtcgatcgcc agttcggcgc gcacatcctt caggctgccg ctcagccgag
     3721 ccgtactgtg tatggttttg ccttcgagtc cgcctttggt gtaaatggcg gtatcgaggg
     3781 caaacggttt tttcaagccg accgaggctg accccgacga actgctccac ggcgtgtcgg
     3841 cagccttcag gtcgaggcgg tgtcctttgc ggtcgtaacg gtatgaagca tccagccgtt
     3901 cgagatagac ggtttgtttg tcaaaggctt tgcccatgct gattttgccc gtctcgaagc
     3961 ggtcgagata gacggcggca ggcaggtcta tgctgtcggg aaggctgagc ggcgggcgtt
     4021 cttctttagg cggagtcggt ttggtaacga tggcgatgtc gccggcggaa atttcggtaa
     4081 tgtgcaggct gcggcgcatc agttcggacg gtttccacgc gaagcggaag cggctgattt
     4141 taaggtctgc cccctcggtt tctatcgacc agttgtcgcc gtcgaagccg tcgagcagcg
     4201 tgcctttgag gttttgggag gaaatgttta cgccgaacca agacgggatt tggtacagcc
     4261 cgaagcgcaa acccgcttcc gtgccggcga gccagccgag gaaacatact gccaaaatca
     4321 gaacagacag cagtgccgcc gacagcttca gcagcgggcg gcgttttttt gccggcgggg
     4381 tagggcggtg ttcagacggc attttgcgcg tgccgttttc ggtcggatcg gtatctgtcg
     4441 gtgcggtatc ggtcataatg tctgtttcaa aatggtttgc tgcaatgccg tctgaagcgg
     4501 ccgtatcggt ttagaagcgc gttcccaagc tgatgtgcca gcggattttc ttgtcgctgt
     4561 gcccgtaggc gatgtcgaag gaaaacggcg cgagcgggct gaaccagcgc acgcccagtc
     4621 ccgaaccgtg tttcagcttc atacgtttga aattggcggc ggcgtcgccc atatcgtgga
     4681 acaccgcgcc ggaaagggtg cgcgtaaacg gcagttggta ttccaggctg cccaccaaga
     4741 gggcgcgttc gggcaggacc gatccgttcg ggccggcaag cccgatgctg tcgagttcgt
     4801 aaccgcgcac ggaagacgcg ccgccgctgc ggaacatcag ccctgaagga acgttggcat
     4861 tgtcgcgggc aacggtgtaa cccgcttgtc cgcgtatgat gaacgtgccg agttttttgt
     4921 tttcgggcgt gaagaaataa cctgcgcggg cagaggtgcg gatcagcgcg gtggaggaca
     4981 ggaatgcgcc caaagtcgta ccgattttgc cgtcgaggta atggccgttt tcgggatgca
     5041 gcacgttgtt gagcagctgg cgtttccaag aggcggtcag catcgtggcg tggctgttgc
     5101 ccaaatcgat atccgagccg gggattttcc ggccttctgc gagaaactcc gcccccagcc
     5161 tggcatcgat gcccgcgcgg tcgcgcacat accagatgcc gccggagaag gcgcgttttt
     5221 cgaggttttg ggtggtcgaa cggttgtagg aaacgttgct tgtccagtag ttgccccgat
     5281 agttgcgcgg ctggctgatg ccggcggcaa gcgtggtttc gtatttgtcc atatcccaga
     5341 cgaccgaacc gatatagcct ttgttgaaga ggttgtaata gtcgtaggcg attttgccgc
     5401 ccaaaccgta ttccgaatcg aggcggatgc cggtttcgag cttgtggcgt ttgacctcgg
     5461 ttacgctgac tttgacgggg acgcggtcgc cttggaggcg gtcgaagtcg gcttgtacgg
     5521 acgcgccgga ataatgcccg ttttgttcga gcgcctgttg gaagtcgagc agcaggtcga
     5581 ggtcgtaggg cgtgcccggt tggaagcgcg ccaagccgga gacgatttgt tcggggtaac
     5641 gctgcgtgcc ggtaatttca aagtcgccga aggcgatggg gcggccgctg tccacgacga
     5701 cgttcaaatc ggcggtggcg gtatcggggt tgacggccgc ccgggtgttg ccgagcttgg
     5761 caagcgggta ggctttgcgc gttaccgcgc cgaggacgga agttttgctg ttttcccaac
     5821 tgtcctgatc gaaatcactg cctaccggct gctgccagtt ttccagcgcg ttgcggtagt
     5881 attcggcgag gttgccgtct gaaaggatgt cgccgaggat ggcgacgccg acgttggcga
     5941 ttttggtgcg cgggcccggt gtgatgtgta ccgtataagc tccgtctttt tccgtcaggc
     6001 tgactttgct gctgaaatag cctttgctgt ggagcattgt tttaacgttg tccggtgctt
     6061 cttcggcgag gaagcccgtc tgttccttgt ccaatacttc ttcctgctgc tgcgtgatga
     6121 gcggcaggtg ttcttcgacc atatctttga tttcactatc ctgcgtgtcg atgcggacgg
     6181 ggaatttggg ttttaattta actgattcgg tgtcggggct tttgtttttg aacaatgcga
     6241 aacccgccgc cttgttttcg gaaaggtcgg cggcaggcgc gtatgcgtgc ggaaagaaaa
     6301 ataaagccgg caggagcagg gcggtcggtt taatcatcat ggtacgggtg tcgtgcatcg
     6361 gtgtggcggt tttcgattct aacactgttc ggacagggtt tcgaacggcc gtttttgtgt
     6421 tgttcgtacg gggcgggacg cttcagacgg catactgccg ccggtatttc ggaggttgcg
     6481 gcccgccgga aatgtatctg cttgttttaa ggtattttgt ttctaatccg catatggaaa
     6541 acaggctgcg tttcggaata gtgccggaaa ataggcagga ttaaataaat ttattttcgt
     6601 tcaataaatt aaaccgttgc gccgaatgat aaagcaaagc ctgtccggca ctgcataggg
     6661 caaatcaacg caaccttaaa acacagccga aaaataaaaa aaaacacaga gaatgagttt
     6721 tcttttaaaa tacaacattt tttaacatat cacaacataa ggaagaatta tggcgttcgg
     6781 caaatcctta tttcatgcga tcggccgcgt cagcctggtc aggcagattg ccgccggttt
     6841 ggcgttgggc atcgtaatcg gttcggtttc cccgcaactg ggcttggcgg caggcttgtt
     6901 cggcagcctg tttgtcggcg cgctcaaagc ggtcgcgccg gttttggtat ttattttggt
     6961 ggcggccaca atcgcgcagc accaaaaagg caacaaggcg catatcaggc cgattatcgt
     7021 cctttacctc atcggtacgt tttccgcagc cctgaccgcc gtcatcgccg gtatggtttt
     7081 cccgacgcac attgttttgg cgggcgcggg cgatgtgtcc gccgcgccgc cttccggcat
     7141 tgtggaagta ttgaaatcgc tgctgatgaa cctggtcgcc aacccgatta acgcgattgc
     7201 caatgccaac tatatcggca ttttggcttg ggctttggtt ttgggcgcgg cgttgcggaa
     7261 tcacggttcg gacgttacgc ggcaggtcgt tgccgatttg gcggaagcgg tttccaccgt
     7321 cgtgaaatgg attatccgtt ttgccccttt gggcattttc gggctggtgt cgtccacaat
     7381 cgcggagacg ggtttcggcg cgctggcggg ttatgcgaag ctgcttgcgg tactgttggg
     7441 ctgtatggcg tttatcgcgc tggtggtcaa tcccgccatc gtgtggtgga aaatccgccg
     7501 caacccttat ccgctggtgt ttacctgcct gcgcgaaagc ggcgtgtatg ccttctttac
     7561 ccgttcttcc gccgccaata tccccgtgaa tatggctttg gcgaaaaaac tggggctgca
     7621 cgaagacact tattcgattt ccatcccgtt gggggcgacc gtcaatatgg gcggcgcggc
     7681 gattacgatt accgttttgg ctatggcggc ggcgtacacc caaggcatac aggttgattt
     7741 tgccaccgcg ctgctgttga gcctggtggc gacggtcagc gcgtgcggcg cgtctggtgt
     7801 ggcgggcggt tcgctgctgc tgattccgct ggcgtgcagc ctgttcggca tcagcaacga
     7861 tgtcgctatg caggtggtcg ccgtcggctt tatcatcggc gtgattcagg attcggcgga
     7921 aacggcgttg aattcttcaa ccgatgtttt gtttaccgcc gccgccgatt tgggcagaca
     7981 gagaaaccgg gcggaataaa ccaagctatg ccgtctgaag cccttttggc gttcagacgg
     8041 catattttta caattttatg ggcatatggc ggaaacaata ccggctgcct tgaatatgaa
     8101 ggagatgatg atgtttaaac gcagtgtgat tgcaatggct tgtattgttg ccctttcagc
     8161 ctgtgggggc ggcggtggcg gatcgcccga tgttaagtcg gcggacacgc tgtcaaaacc
     8221 tgccgcccct gttgttactg aagatgtcgg ggaagaggtg ctgccgaaag aaaagaaaga
     8281 tgaggaggcg gtgagtggtg cgccgcaagc cgatacgcag gacgcaaccg ccggaaaagg
     8341 cggtcaagat atggcggcag tttcggcaga aaatacaggc aatggcggtg cggcaacaac
     8401 ggataatccc gaaaataaag acgagggacc gcaaaatgat atgccgcaaa atgccgccga
     8461 tacagatagt tcgacaccga atcacacccc tgcaccgaat atgccaacca gagatatggg
     8521 aaaccaagca ccggatgccg gggaatcggc acaaccggca aaccaaccgg atatggcaaa
     8581 tgcggcggac ggaatgcagg gggacgatcc gtcggcaggg gaaaatgccg gcaatacggc
     8641 agatcaagct gcaaatcaag ctgaaaacaa tcaagtcggc ggctctcaaa atcctgcctc
     8701 ttcaaccaat cctaacgcca cgaatggcgg cagcgatttt ggaaggataa atgtagctaa
     8761 tggcatcaag cttgacagcg gttcggaaaa tgtaacgttg acacattgta aagacaaagt
     8821 atgcgataga gatttcttag atgaagaagc accaccaaaa tcagaatttg aaaaattaag
     8881 tgatgaagaa aaaattaata aatataaaaa agacgagcaa cgagagaatt ttgtcggttt
     8941 ggttgctgac agggtagaaa agaatggaac taacaaatat gtcatcattt ataaagacaa
     9001 gtccgcttca tcttcatctg cgcgattcag gcgttctgca cggtcgaggc ggtcgcttcc
     9061 ggccgagatg ccgctgattc ccgtcaatca ggcggatacg ctgattgtcg atggggaagc
     9121 ggtcagcctg acggggcatt ccggcaatat cttcgcgccc gaagggaatt accggtatct
     9181 gacttacggg gcggaaaaat tgtccggcgg atcgtatgcc ctcagtgtgc aaggcgaacc
     9241 ggcaaaaggc gaaatgcttg cgggcacggc cgtgtacaac ggcgaagtgc tgcatttcca
     9301 tatggaaaac ggccgtccgt ccccgtccgg aggcaggttt gccgcaaaag tcgatttcgg
     9361 cagcaaatct gtggacggca ttatcgacag cggcgatgat ttgcatatgg gtacgcaaaa
     9421 attcaaagcc gttatcgatg gaaacggctt taaggggact tggacggaaa atggcggcgg
     9481 ggatgtttcc ggaaggtttt acggcccggc cggcgaagaa gtggcgggaa aatacagcta
     9541 tcgcccgaca gatgcggaaa agggcggatt cggcgtgttt gccggcaaaa aagagcagga
     9601 ttgatgctga tgccgcctga agcgggggcg ttcagacggc attgtgatgt ttgggttgcg
     9661 ggtccggttc aagtccgcat cagttgataa acccgtcgtc tttcattttc ttttcggaaa
     9721 aatactggcc gaataccagc aaggcggcga ggatgatgac aaacagcccc gccatagtca
     9781 gtgtgatttt gaagaacaat tccgcttcga gaaaagaaaa ccaaagttgc acaatcagca
     9841 gcagcaccca gccggcaaac agtccgagac aggcataaac gccaagctta aacacggtcc
     9901 cgctccaaaa tgacgacgta ggcctcgcgt ttgaaaaaca acagcatacg gcgcaaatct
     9961 ttttccatcg ttacaacccg ccagccttcg ggggtttgtt tgttgaggaa cgcgctgaaa
    10021 ttgacggggt tgacctttgc cgcgccgaaa aacaggctgg acaactggct ttcctgataa
    10081 atgacgactt tgtattcttt cataggattc cttttaacat aagggatcat cttttcagac
    10141 gaccccttaa gttgctaatg atgcaaaaca gcaaacctta tttcttattg cccaactgcg
    10201 gtaataccga gccttcgccc agcgacagca aaccgctttg cgagtagatg cccagtttgg
    10261 cgcgggtgtc ggtgatgtcg aggttgcgca tcgtgagctg tccgatgcgg tcgagcgggg
    10321 taaacgccgc accttcgact ttttccatac tcaggcgttc gggttggtag gtcaggttgg
    10381 gcgattcggt gttcagaatc gagtagtcgt tgccgcgccg cagttcgagg gtaacttcgc
    10441 cggtaacggc tttggcgacc cagcgttggg cggtttcgcg caacatcaag gcttggctgt
    10501 cgaaccagcg gccttggtag agcaaacggc cgaggcgcag gccgttgatg cggtattgtt
    10561 cgatggtgtc ttcgttgtgg atgccggtca ccaagcgttc gtaggcgatg tggaacaacg
    10621 ccatacccgg ggcttcgtag atgccgcgcg atttggcttc gatgatgcgg ttttcgattt
    10681 ggtcgctcat acccaagccg tggcggccgc cgatgcggtt ggcttcgagg aagagttcga
    10741 cggggtcggc gtattctttg ccgttcagtg caaccggcac gccttcttca aagcgcacgc
    10801 tgacttcttc ggggctgact tcaacgtttt cgtcccaaaa ggcaacgccc ataatgggtt
    10861 tgacgatttt gatgcccgag ttcaaaaatt ccaagtcttt ggcttcgtgg gtcgcgccga
    10921 gcatattgga atcggtggag taggcttttt caaccgacat tttgtagttg aagccgttgg
    10981 caatcagaaa ttcgctcatt tcgtgacggc cgccgagttc gtcgataaat tgctggtcga
    11041 gccagggttt gtagattttc agcgcgggat tggtgagcaa accgtagcgg tagaaacgct
    11101 cgatgtcgtt gcctttgtag gtgctgccgt cgccccagat gtttacgtcg tcttctttca
    11161 ttgcggaaac aagcatcgtg ccggttacgg cgcggcccag aggcgtggtg ttgaaatagg
    11221 cgatgccgcc ggtggaaacg tggaacgcgc cgcattggat ggcggcgatg ccttcgtgtg
    11281 ccaactgcgc gcggcagtcg attaagcggg cgttttccgc accgtattcc atcgcttttt
    11341 tgggaatggc gttgtagtcg tcttcatcgg gctgaccgag gttggcagtg taggcataag
    11401 gcagtgcgcc tttgagtttc atccacaaca gcgcggcgga ggtatcaagt ccgccggaga
    11461 aggcgatgcc gactttctga ccgacgggga ggttttgtaa aatagtatgg ttttggctca
    11521 tgaaaaaatc ctcggtagct tgaaaaatca aagccattat cttataaata ggaaatattg
    11581 tcagccatca tgccgtctga acgggtattc cgccgtttca ggcggtattt aaaaccgaaa
    11641 acattatgaa tgcgttcaac ctcatcatca tcggcgacga aatcttacac ggcagccgcc
    11701 aagacaagca tttcgccttt ttcaaatccc tgctcgaatc caaagggctg aagctcaatc
    11761 aggtgcaata tctgcccgac gaacccgatt tgctggtcag gcaactgcgc cgcagctttt
    11821 cagacggcat accgacgttt gttaccggcg gcatcggcgc cacgcccgac gatcataccc
    11881 gccaagcggc cgccgccgct ttggagttgc ccgtcgtccg ccatcctgaa gccgccgggt
    11941 ttatcgaagg cataacccag aaacgcggcg agccgcttga ttcgccggaa cacgcccaac
    12001 gcctgaaaat ggcagatttc cccgaaggcg cggaattggt gcccaatccg tttaataata
    12061 tcgccggatt ttccattcgc gagcattatt tcttccctgg ttttcctgtg atggcgcacc
    12121 cgatggcgga atgggttttg gatacttatt acgccggccg cttcaaccaa acccaacgcg
    12181 gcagccgcag cgtgtatgtg ttcgagcagc ccgaatcgcg cattacgccg attatggagc
    12241 atatcgagca aacttatccc ggcgtgcgtt cgtacagcct gcccagcgtc ggttggacgc
    12301 attcagacgg cacgcaggtc aaaccgcaca ttgagttcgg catcaaagcc gaaggagaag
    12361 ccgtcaacct tttggacgcg gcgtgggcgg aagtgttgca cagcttggac ggattgggag
    12421 cagagctgaa aaatcgggta aactgaaaac cgtttgccca aatcggacga tatttaagga
    12481 aaaccatgca ataccgaatc agaagagaaa acgaagcacc cgaagcaaaa aatgcggggg
    12541 aaaccttatg ggagcgcgat atgatgcgcg aagtgctgtt gtccgcctat caggacaggc
    12601 gcagggagcg gatgtggaaa aacatctggc gcgccgtcag caccctgatt ctggttgccc
    12661 tgattgcagg cattttccaa aaagacgaag ccgcattgca gttggcgggc aacacgccgc
    12721 ataccgcagt cgtcaacctg tacggcgaaa tcggcaacgg tgtagaagac caggtcaaaa
    12781 aactcaaaga cggtatggag gccgcctaca aaaacccgca ggcaaaagcc atcgtcatcc
    12841 gcgccaacag ccccggcggt tcgcccgtcg tctccaacac cgcttttgaa gaaatacgcc
    12901 gtctgaaagc gcaacatccc gacattcccg tttatctcgt ggcggaggat atgtgtgcat
    12961 ccggctgcta ctatattgcg gcggcggcag acaaaattta tgcggactcg tccagcatcg
    13021 tcggcagcat cggcgttatc ggcagcagtt ttgatgctac tgaattaatg gaaaaaatcg
    13081 gcgtgaaacg cagggttaaa attgcaggca gcaacaaagg catgggcgat ccgttttcgc
    13141 ccgaaacgcc cgaacagtcg aaaatctggg aagaaatgct gaccggcata cacggcgagt
    13201 tcatcaaagc cgtcaaaacc ggacgcggcg gccgcctcaa attccgacaa tatcccgacg
    13261 tgttcagcgg tcgcgtgtac acaggcgcgg atgcgctgaa agtcgggctg gtggacggac
    13321 tcggcaatat ttacagcgtg gcgcgagacg tggtcaaagc ccccgatgtg gtggattaca
    13381 ctccgaagga cgatttcggc agaatcttgg gcagacgctt cggcgcagaa ctcaaagccg
    13441 gcgtgcgcga agccctgcag gccgtccggt agcgttgttt acagtatttc taagggaata
    13501 ccaaaataaa aatatacaca aaaacactca cctccccagt atgctgccac taagtcagcc
    13561 gcgtcactat ttaccgtgca cttaaagccg taaaaggcag gttgtccccg ggaggttttg
    13621 tgcatcctga taccgatcgg ttgttgttgc tcaaaggaca gaaggccgct gataaacgag
    13681 attacctgtt tgtcgctatt gacgattttt atactctgcc actttgccgg acaaaaccgc
    13741 agacagtgct gccaagtttc tgaccgaaca tctggccgac ccctgcttgt acctgattga
    13801 gtacgtttac tctgacaatg ataggtaata taaagagccg tccaacatgc tttcggtgca
    13861 gcttgttatg ataacgggat tggttggagg cttgcccgat ttgcttgtcc gcagaccaac
    13921 ggtaaggcgg agcgggttat ccgtaccttg atggagatgt ggcatgagga acagtcgttt
    13981 gacagtccgg aacatcggca aaaggagttg tgctgcttta ttaatttagg ggctgcccta
    14041 gatcactagg gaaattcaaa ttaagttaga attatcccta tgagagaaag tcgtctaagc
    14101 cggtaataaa caaaataaac tcattttgtt atcgtggcta tgatgtattg gatgcgggcg
    14161 aatttagcca tttccgtatc aatcacagca cacattttgc cgaacgacaa aaccatatta
    14221 atggaactga gaacttttgg aatcaagcaa aatgtcattt acgcaagttt aacggcattc
    14281 ccaaagcgca ttttgagctg tatttaaagg agtgcgaatg gcgttttaac aacagtgaaa
    14341 taaaagttct tgttccattt taaaacaatt agtaaaatcg agtttatcct agttgtccag
    14401 ggcagcctca tctctttata gatagctgct taccaagtat ccttaattgc taattcaagc
    14461 caatcttcaa aactattaaa aaattcatgg ttttctatat tatctaaatt aatgacaata
    14521 accctagaat ttcctgttac atcattacca tcaaaataag cttcccattc tccattacta
    14581 gcgaatggga taagatttaa atcaggcagg atagaatttc taa
//
LOCUS       DAXIFS010000030        14577 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.030, whole genome shotgun sequence.
ACCESSION   DAXIFS010000030 DAXIFS010000000
VERSION     DAXIFS010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14577
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.030"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            116..1333
                     /locus_tag="ACFOCA_000704"
     CDS             116..1333
                     /locus_tag="ACFOCA_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HFC6987456.1"
                     /translation="MKHFPSKVLTTAILATFCSGALAATNDDDVKKAATVAIAAAYNN
                     GQEINGFKAGETIYDIDEDGTITKKDATAADVEADDFKGLGLKKVVTNLTKTVNENKQ
                     NVDAKVKAAESEIEKLTTKLADTDAALADTDAALDATTNALNKLGENITTFAEETKTN
                     IVKIDEKLEAVADTVDKHAEAFNDIADSLDETNTKADEAVKTANEAKQTAEETKQNVD
                     AKVKAAETAAGKAEAAAGTANTAADKAEAVAAKVTDIKADIATNKDNIAKKANSADVY
                     TREESDSKFVRIDGLNATTEKLDTRLASAEKSITEHGTRLNGLDRTVSDLRKETRQGL
                     AEQAALSGLFQPYNVGRFNVTAAVGGYKSESAVAIGTGFRFTENFAAKAGVAVGTSSG
                     SSAAYHVGVNYEW"
     gene            complement(1399..1737)
                     /locus_tag="ACFOCA_000705"
     CDS             complement(1399..1737)
                     /locus_tag="ACFOCA_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HFC6987457.1"
                     /translation="MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTE
                     IYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRI
                     RTGERSDAAV"
     gene            1888..5850
                     /gene="purL"
                     /locus_tag="ACFOCA_000706"
     CDS             1888..5850
                     /gene="purL"
                     /locus_tag="ACFOCA_000706"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HFC6987458.1"
                     /translation="MSVVLPLRGVTALSDFRVEKLLQKAAALGLPEVKLSSEFWYFAG
                     SEKALDAATVEKLQALLAAQSVEQTPKAREGLHLFLVTPRLGTISPWASKATNIAENC
                     GLAGIERIERGMAVWLEGALTDEQKQQWAALLHDRMTESVLPDFQTASKLFHHLESET
                     FSTVDVLGGGKEALVKANTEMGLALSADEIDYLVENYQALQRNPSDVELMMFAQANSE
                     HCRHKIFNADFILNGEKQPKSLFGMIRDTHNAHPEGTVVAYKDNSSVIEGAKIERFYP
                     NAAENQGYRFHEEDTHIIMKVETHNHPTAIAPFAGAATGAGGEIRDEGATGKGSRPKA
                     GLTGFTVSNLNIPGLKQPWEQDYGKPEHISSPLDIMIEGPIGGAAFNNEFGRPNLLGY
                     FRTFEEKFDGQVRGYHKPIMIAGGLGSIQAQQTHKDEIPEGALLIQLGGPGMLIGLGG
                     GAASSMDTGTNDASLDFNSVQRGNPEIERRAQEVIDRCWQLGDKNPIISIHDVGAGGL
                     SNAFPELVNDAGRGAVFELREVPLEEHGLTPLQIWCNESQERYVLSILEKDLDTFRAI
                     CERERCPFAVVGTATDDGHLKVRDDLFANNPIDLPLNVLLGKPPKTTRTDKTVTPSKK
                     PFHADDIDITEAAYRVLHLPAVAAKNFLITIGDRSVGGMTHRDQMVGKYQTPVADCAV
                     TMMGFNTYRGEAMSMGEKPTVALFDAPASGRMCVGEAITNIAAVNIGDIGNIKLSANW
                     MAACGNEGEDEKLYRTVEAVSKACQALDLSIPVGKDSLSMKTVWQDGEEKKSVVSPLS
                     LIISAFAPVQDVRKTVTPELKNVEDSVLLFVDLGFGKARMGGSAFGQVYNNMSGDAPD
                     LDDTGRLKAFYNVIQQLVAEDKLLAYHDRSDGGLFAVLVEMAFAGRCGLDIDLNLLLA
                     QTFITNHTALSQSLRTEEVKALAEWQETIARTLFNEELGAVIQVRKQDVADIINLFYQ
                     QQLHHNVFEIGTLTDENTLIIRDGQTHLISDNLIKLQQTWQETSHQIQRLRDNPACAD
                     SEFALIGDNDRSALFANLKFDVNEDIAAPFINSGAKPKIAILREQGVNGQIEMAAAFT
                     RAGFDAYDVHMSDLMAGRFRLADFKMLAACGGFSYGDVLGAGEGWAKSILFHPALRDQ
                     FAAFFADPDTLTLGVCNGCQMVSNLAEIIPGAEAWPKFKRNLSEQFEARLSMVHVPKS
                     ASLILNEMQGSSLPVVVSHGEGRADFALHGGNISADLGIALQYVDGQNQVTQTYPLNP
                     NGSPQGIAGVTNADGRVTIMMPHPERVYRAAQMSWKPEDWTELSGWYRLFAGARKALG
                     "
     gene            5945..6703
                     /gene="gloB"
                     /locus_tag="ACFOCA_000707"
     CDS             5945..6703
                     /gene="gloB"
                     /locus_tag="ACFOCA_000707"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HFC6987459.1"
                     /translation="MKITPVKALTDNYIWMIQHGNHAVCVDPSEPSPVLEFLVRNRLM
                     LAQTWVTHPHPDHEGGAAALWRGYMESPVYGESDIEAATHTVTAGTQFTFGDGQVTVW
                     ATPGHTDRHTSYLLETSDGIHVFCGDTLFSAGCGRVFTGTIEQLYDSFQRFNRLPENT
                     LFYPAHEYTAANLDFAAHIEPDNADIQTALKAAAHTPTLPVTLAHERRVNPFLRVDLP
                     HVRDRAEALSGKTLNSSLDTFVALRELKNQYRTK"
     gene            7017..11491
                     /locus_tag="ACFOCA_000708"
                     /pseudo
     CDS             7017..11491
                     /locus_tag="ACFOCA_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678286.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family peptidase"
     gene            11723..13177
                     /gene="mgtE"
                     /locus_tag="ACFOCA_000709"
     CDS             11723..13177
                     /gene="mgtE"
                     /locus_tag="ACFOCA_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HFC6987460.1"
                     /translation="MSIEHTPPTHDGETGQNHAERPSADFDRVHSLCEILEPAFEQIE
                     NGTPLEDAPLRDKLTELTVLLSELHPADVAAVLESLPPRERNIVWILVKPEDDGEVLL
                     EVSDAVRETLIESMDKDELLAAVDDLDADELAELADDLPHQVVYEALQTRDEEERAQV
                     KAAMSYEDNQVGAIMDFELVSIRADVACEVVLRYLRRFDSLPDHTDKIFVVDENDVLQ
                     GVLPIRKLLVADPEDLVENVMAKDVVRFRAEDDVEEAAQAFERYDLVTAPVVDENKKL
                     IGRVTVDEMVDVIREESEADMLNMAGLQEEEDLFAPVLDSVKNRWMWLAVNLCTAFLA
                     SRVIGAFEGSIEKIVALAALMPIVAGIGGNSGNQTITMIVRAMAMGQLTGMQAGRLLK
                     KEVGVALVNGIIWGTVMGAVSWLLYGSLGIGLVMIAAMTLNLLLAATVGVLIPVVMEK
                     FGRDPALGSSVLITAVTDSGGFLIFLGLATLFLL"
     gene            complement(13263..14171)
                     /gene="hslO"
                     /locus_tag="ACFOCA_000710"
     CDS             complement(13263..14171)
                     /gene="hslO"
                     /locus_tag="ACFOCA_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HFC6987461.1"
                     /translation="MNQTAINRADVRTRFIFDDMPVRGLHVRLENEWQHIVKQKNYPA
                     AIRRALGELLAAGVLLSGNLKNEGTLIVQVQGQGRLKMLVAEATSDRTVRATARWDEA
                     AEIGEDESLVDLLGEGGVFVLTLQPKDGEPWQGVVPLEGDGIAQMLMNYMKRSEQLDT
                     HIVLSASDEAAGGLLVQRLPEEVLDEEAWEHVSTLARTLTAGELAELDAQHVLYRLFH
                     ETPPRVFEPETFEFSCTCSRGKVSDMLLMLGGEEVGGVVVEQGSIEVDCDFCHSKYVF
                     DETDVNALFGEDVVGVAKGLPRHTVQ"
     gene            14416..>14577
                     /locus_tag="ACFOCA_000711"
     CDS             14416..>14577
                     /locus_tag="ACFOCA_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan endopeptidase"
                     /protein_id="HFC6987462.1"
                     /translation="MDSFFKPAVWAVLWLMFAVRPALADELTNLLSSREQILRQFAED
                     EQPVLPINRA"
BASE COUNT         3800 a         4470 c         3522 g         2785 t
ORIGIN      
        1 attgtatata tgcctccttt catatatact ttaatatgta aacaaacttg gtggggataa
       61 aatacttaca aaagatttcc gccccatttt ttatccactc acaaaggtaa tgagcatgaa
      121 acactttcca tccaaagtac tgaccacagc catccttgcc actttctgta gcggcgcact
      181 ggcagccaca aacgacgacg atgttaaaaa agctgccact gtggccattg ctgctgccta
      241 caacaatggc caagaaatca acggtttcaa agctggagag accatctacg acattgatga
      301 agacggcaca attaccaaaa aagacgcaac tgcagccgat gttgaagccg acgactttaa
      361 aggtctgggt ctgaaaaaag tcgtgactaa cctgaccaaa accgtcaatg aaaacaaaca
      421 aaacgtcgat gccaaagtaa aagctgcaga atctgaaata gaaaagttaa caaccaagtt
      481 agcagacact gatgccgctt tagcagatac tgatgccgct ctggatgcaa ccaccaacgc
      541 cttgaataaa ttgggagaaa atataacgac atttgctgaa gagactaaga caaatatcgt
      601 aaaaattgat gaaaaattag aagccgtggc tgataccgtc gacaagcatg ccgaagcatt
      661 caacgatatc gccgattcat tggatgaaac caacactaag gcagacgaag ccgtcaaaac
      721 cgccaatgaa gccaaacaga cggccgaaga aaccaaacaa aacgtcgatg ccaaagtaaa
      781 agctgcagaa actgcagcag gcaaagccga agctgccgct ggcacagcta atactgcagc
      841 cgacaaggcc gaagctgtcg ctgcaaaagt taccgacatc aaagctgata tcgctacgaa
      901 caaagataat attgctaaaa aagcaaacag tgccgacgtg tacaccagag aagagtctga
      961 cagcaaattt gtcagaattg atggtctgaa cgctactacc gaaaaattgg acacacgctt
     1021 ggcttctgcc gaaaaatcca ttaccgaaca cggtacgcgc ctgaacggtt tggatagaac
     1081 agtgtcagac ctgcgtaaag aaacccgcca aggccttgca gaacaagccg cgctctccgg
     1141 tctgttccaa ccttacaacg tgggtcggtt caatgtaacg gctgcagtcg gcggctacaa
     1201 atccgaatcg gcagtcgcca tcggtaccgg cttccgcttt accgaaaact ttgccgccaa
     1261 agcaggcgtg gcagtcggca cttcgtccgg ttcttccgca gcctaccatg tcggcgtcaa
     1321 ttacgagtgg taagcagcat ctcccgataa agaaaccgca gccctgcaag gctgcggttt
     1381 ttattttcta tccggccgtc aaaccgccgc gtccgaacgt tcgcccgtgc ggatacggat
     1441 tgcctcctcg accggcagca caaaaatctt gccgtcgccg atttttcccg aacgcgccac
     1501 ctcgacaatc acgtcaatcg cgcgttccac agcatcatcc gccaacacca gctcgatttt
     1561 gaccttgggc aggaaatcga cagcgtattc cgcgccccgg taaatctccg tatgcccctt
     1621 ctgcctgccg aaccctttga cctcgctgac ggtcataccc gtaatgccga tttccgtcaa
     1681 cgcctcgcgc acgtcgtcga gtttgaacgg tttgacaatc gcctcgattt ttttcataaa
     1741 atttcctttg aacaaacaat acaaacacat ccgaaaaacg ggaacctccc gtcagattgt
     1801 caacatttta agccaaaata cccaagcaat acagccccgt tgcgcgtata atgacagatt
     1861 ttccaaccgc atttgagagc cgaatccatg tctgtcgttt tgcccttgcg cggcgttacc
     1921 gccctttccg atttccgtgt cgaaaaactc ttgcaaaaag ccgccgcact cggactgccc
     1981 gaagtcaaat taagcagcga attttggtat ttcgccggca gcgagaaagc attggatgcc
     2041 gcgactgtcg aaaaactgca agccttgttg gcggcgcaaa gcgttgaaca aacgccaaaa
     2101 gcgcgcgagg gcttgcattt gtttttggta acgccccgtt tgggtacgat ttcgccgtgg
     2161 gcttccaagg cgaccaatat cgcggaaaac tgcggtttgg caggcatcga gcgcatcgag
     2221 cgcggcatgg cggtgtggct ggaaggtgcg cttaccgatg aacagaaaca gcaatgggcg
     2281 gcgttgctgc acgaccgcat gaccgaatcc gtgctgcccg attttcagac ggcatccaaa
     2341 ttattccacc atctcgaatc cgaaaccttt tccaccgttg atgttttagg cggcggtaaa
     2401 gaggctttgg tcaaagccaa taccgaaatg ggtttggcac tctccgccga cgaaatcgat
     2461 tatctggttg aaaactatca ggctttgcaa cgcaatccgt ccgatgtgga gctgatgatg
     2521 ttcgcgcagg caaacagcga acactgccgc cacaaaatct tcaacgccga cttcatcctc
     2581 aacggcgaaa aacaaccgaa atcccttttc ggcatgatac gcgacacgca caacgcgcat
     2641 cccgaaggca cggtcgtcgc ttataaagac aattcgtccg tgatcgaagg cgcgaaaatc
     2701 gagcgtttct atccgaatgc ggcggaaaac caaggctacc gtttccacga ggaagacacg
     2761 catatcatca tgaaagtgga aacgcacaac cacccgaccg ccatcgcgcc gtttgcaggc
     2821 gcggcaacgg gcgcgggcgg cgaaatccgc gacgaaggcg caacgggcaa aggttcgcgt
     2881 ccgaaagcag gcttgaccgg ctttaccgtg tccaacctca acatccccgg cctcaaacag
     2941 ccgtgggaac aagattacgg caagccggaa catatttcct cgccgctgga catcatgatt
     3001 gaaggcccga tcggcggcgc ggcgttcaac aacgaattcg gccgccccaa cctcttgggc
     3061 tacttccgca cttttgaaga aaaatttgac ggtcaggttc gcggctacca caaaccgatt
     3121 atgattgccg gcggcttggg cagcattcag gcgcagcaga cgcataaaga cgaaatcccc
     3181 gaaggcgcgt tgctgatcca actgggcggc ccgggcatgc ttatcggctt gggcggcggc
     3241 gcggcttctt cgatggatac cggcacgaac gacgcttctt tagacttcaa ctccgtacaa
     3301 cgcggcaacc ccgaaatcga acgccgcgcg caggaagtca tcgaccgctg ctggcagctc
     3361 ggcgacaaaa acccgattat ctccatccac gacgtgggcg caggaggttt gtccaacgcc
     3421 ttccccgaac tggtcaacga tgccggacgc ggcgcggtat tcgagctgcg cgaagtgccg
     3481 ttggaagaac acggtttaac gcctttgcaa atctggtgca acgaatcgca agagcgttat
     3541 gtgttgtcga ttttggaaaa agatttggat accttccgcg ccatctgcga acgcgaacgc
     3601 tgcccgtttg ccgtggtcgg tacagcgacc gacgacggtc atttgaaagt gcgcgacgat
     3661 ttgttcgcca acaaccccat cgatttgccg ttgaacgtct tgctcggcaa accgcccaaa
     3721 accacgcgta ccgacaaaac agttacgcca tctaaaaaac cgtttcacgc cgacgatatc
     3781 gacatcaccg aagccgccta ccgcgttttg cacctgcctg ccgtagccgc caaaaacttc
     3841 ctgattacca tcggcgaccg cagcgtcggc ggcatgaccc accgcgacca aatggtcggc
     3901 aaataccaaa cccccgtagc cgactgcgcc gttaccatga tgggcttcaa tacctatcgc
     3961 ggcgaagcaa tgtctatggg cgaaaaaccg accgtcgccc tgtttgacgc gcctgcttcg
     4021 ggcagaatgt gcgtcggcga agccatcacc aacatcgcgg cggtcaacat cggcgacatc
     4081 ggcaacatca agctctccgc caactggatg gcggcgtgcg gcaacgaagg cgaagacgaa
     4141 aaactctacc gcaccgtcga agcggtttcc aaagcctgtc aggcattgga tttgagcatt
     4201 cccgtgggca aagacagcct gtcgatgaaa accgtatggc aggatggcga agagaaaaaa
     4261 tccgtcgttt cgccgttgag cctgattatc tccgcgttcg cgccggttca agacgtacgc
     4321 aaaaccgtta cgcccgaatt gaaaaacgtc gaggacagcg tattgctgtt tgtcgatttg
     4381 ggcttcggca aagcgcgtat gggcggctct gcattcggtc aggtatacaa caacatgagc
     4441 ggcgacgcgc ccgatttgga cgacacaggc cgtctgaaag cgttttacaa cgtgattcaa
     4501 cagcttgtcg ccgaagacaa actcttggca taccacgacc gcagcgacgg cggcttgttt
     4561 gccgttttgg tagaaatggc gtttgcaggg cggtgcggct tggatataga tttaaattta
     4621 ttgcttgcac aaacatttat taccaaccat accgctctgt ctcaatcatt gcggactgaa
     4681 gaggtaaaag cgttggctga atggcaagaa accattgccc gcacattatt taatgaagag
     4741 ttgggtgctg ttatccaagt tagaaaacaa gatgttgccg atattatcaa tttattctat
     4801 caacaacagc tgcatcataa tgtctttgaa atcggtacgt taactgatga gaacacgtta
     4861 atcatccgcg acgggcaaac gcaccttatt tctgacaacc taatcaaact gcaacaaacc
     4921 tggcaagaaa ccagccatca aatccaacgc ctgcgcgaca accctgcctg cgccgacagc
     4981 gagtttgccc tgattggcga caacgaccgc agcgcattgt ttgccaacct gaaattcgac
     5041 gtgaacgaag acatcgccgc gccgtttatc aacagcggcg cgaaacccaa aatcgccatc
     5101 ctgcgcgaac agggcgtgaa cgggcaaatc gaaatggccg ccgccttcac ccgcgccgga
     5161 ttcgatgctt acgacgtgca tatgtccgac ctgatggcag gccgcttccg ccttgccgac
     5221 ttcaaaatgc tggcggcgtg cggcggcttc agctacggcg acgtactcgg cgcgggcgaa
     5281 ggctgggcga aatccatcct gttccaccct gccttgcgcg accaatttgc cgccttcttt
     5341 gccgatccgg acacgctgac attgggcgtg tgcaacggct gccagatggt cagcaacctc
     5401 gccgagatta tcccgggtgc agaggcatgg cctaaattca aacgcaacct gagcgaacag
     5461 tttgaagcac gcctgagcat ggttcacgtt ccgaaatcag cgtcgctgat tctgaacgaa
     5521 atgcaaggct ccagcctgcc tgtcgtggtc agccacggcg aaggccgcgc cgacttcgcg
     5581 cttcacggcg gcaatatttc cgccgatttg ggcatcgcgc tgcaatatgt ggacggtcaa
     5641 aaccaagtga cccaaaccta cccgctcaac cccaacggct cgccgcaagg catcgccggc
     5701 gttaccaacg ccgacggccg cgtgaccatc atgatgccgc atccggaacg cgtgtaccgt
     5761 gccgcacaaa tgagctggaa accagaagac tggacggaat tgtccggctg gtaccgcctc
     5821 tttgccggcg cacgtaaagc cttgggctaa ccgccctact caaaccaatg ccgtctgaag
     5881 aatatttcag acggcgttcc ggcataccat cctttaaacg gtatccgtcc accgaggaac
     5941 actcatgaaa atcacccccg tcaaagccct aaccgacaac tacatctgga tgatacagca
     6001 cggcaaccat gccgtctgcg tcgacccttc cgaaccctcg cccgtcttgg aattcctcgt
     6061 ccgcaaccgc ctcatgcttg cccaaacatg ggtaactcac ccccaccccg accacgaggg
     6121 cggtgcggcg gcactctggc gcggctacat ggaatcgccc gtttacggcg aatccgacat
     6181 cgaagcagca acccacaccg taaccgccgg cacccaattc accttcggcg acggacaggt
     6241 taccgtttgg gcaacacccg gccacacaga ccgccacacc agctaccttc tcgaaacttc
     6301 agacggcata cacgttttct gcggcgacac cctgttttcc gccggctgcg gacgcgtgtt
     6361 taccggcaca atcgaacagc tttacgacag cttccaacgc ttcaaccgcc tgcctgaaaa
     6421 caccctgttc tacccggcac acgaatacac cgccgccaac ctggattttg ccgcccatat
     6481 cgagccggac aacgccgaca ttcagacggc actgaaagcg gcggcgcata cgcctaccct
     6541 gcccgttacc ctcgcgcacg aacgccgcgt caatccgttt ttgcgcgtcg acctgccgca
     6601 cgtcagagac cgcgccgagg cattgagcgg gaaaacgtta aacagcagcc tcgatacctt
     6661 tgtcgcgctg cgtgaactta aaaaccaata ccggacgaaa taaaacaacg ggaaaacgca
     6721 gccattccta ggatttttat taaaatctta aataaaatca tacaatcatc gccaatagac
     6781 gaaaggacac cgttgcctta taatcaaaca aaaacaaaat atataatata gtggattgaa
     6841 tttaaatcag gacaaggcga cgaagccgca gatagtacgg caaggcgagg caacgctgta
     6901 ctggtttttg ttaatccact atattgttaa tccactatat aaatccagca caaaacggga
     6961 tcggtgattc ttgtccgcaa gaatcgttga ttttctctat tacacggata atcatcatgc
     7021 gcttcacaca caccacccca ttttgttccg tattgtccac cctcggtctt tttgccgttt
     7081 cccctgctta ctcatccatt gtccgcaacg atgtcgatta ccaatatttt cgcgactttg
     7141 ccgaaaataa aggcgcgttc gccgtaggtg caagcaatat ttccatccaa gacaagcaag
     7201 gcaaaatatt aggcagggtt ctcaacggca tccccatgcc cgacttccga gtcagcaacc
     7261 ggcaaaccgc catcgccacc ctgattcacc cccaatacgt caacagtgtc aaacacaacg
     7321 tcggctacgg ttccatacaa ttcggcaacg acacccaaaa tccagaagaa caagcctata
     7381 cctaccgcct cgtatcacgc aacccgcacc cggactacga ctaccacctt ccccgcctca
     7441 acaaactggt taccgaaatc tcacctgccg cactcagcag cgtacccttg cttggaaacg
     7501 gccagccaaa ggccaatgcc tacctcgata ccgaccgctt cccctacttt gtacgactcg
     7561 gctcaggcac gcaacaagtc cgcaaagcag acggcacgcg tacacgaacc gccccggcat
     7621 accaatacct gaccggcggc acgccgctga aagtattggg gttccaaaac cacggcttac
     7681 tcgtcggcgg cagcctgacc gaccaacccc ttaacaccta cgcaatcgcc ggagacagcg
     7741 gttcccccct gtttgccttc gacaagcatg aaaaccgctg ggtgcttgcg ggcgtactca
     7801 gcacctacgc cggcttcgat aatttcttca acaaatacat cgtcacgcaa cccgaattca
     7861 tccgttccac catccgccaa tacgaaaccc ggctggatgt cgggctgacc accaacgaac
     7921 tcatatggcg cgacaacggt aatggcgaca gcaccctgca agggctcaac gaacgcatca
     7981 ccctgcccat tgcaaaccct tcgcttgccc cacaaaacga cagcaggcac atgccgtctg
     8041 aagatgccgg caaaacgctc atcctatcca gcaggttcga caacaaaaca ctgatgctgg
     8101 cagacaatat caaccaaggc gcaggcgcat tgcagttcga cagcaacttc accgtcgtcg
     8161 gtaaaaacca cacatggcaa ggtgcaggcg ttatcgtagc cgacggcaaa cgcgtcttct
     8221 ggcaagtcag caaccccaaa ggcgaccggc tctccaaact gggcgcaggc acgcttatcg
     8281 ccaacggaca aggcatcaac cagggcgaca tcagcatcgg ggaaggcact gtcgtactcg
     8341 cccaaaaagc tgcttcagac ggcagcaaac aagcattcaa ccaagtcggc atcaccagcg
     8401 gcaggggtac ggccgtcctc gccgacagcc agcaaatcaa atccgaaaac ctctatttcg
     8461 gcttcagggg cggacggctc gacctcaacg gcaacaacct tgcctttacc catatccgcc
     8521 atgcggacgg cggcgcgcag atcgtcaacc acaaccctga ccaagccgcg acactgacgc
     8581 tgaccggcaa ccccgtcctc agtcctgagc atgtcgagtg ggtgcaatgg ggcaaccgtc
     8641 cgcaaggcaa cgcggcggtt tacgaataca tcaacccgca ccgcaaccgt cggaccgact
     8701 acttcatact caaacccggc ggcaacccgc gcgaattttt cccgttaaat atggaaaact
     8761 caacaagctg gcaatttatc ggcaacaaca ggcaacaggc cgccaaacaa gtcgcccaag
     8821 ccgaaaatgc ccgccccgac ctaattacct tcggcggata cttgggtgag aacgcgcaaa
     8881 cgggcaaagc cgcaccgagt tacagcaaaa ccaatatcga atgggtgaat ggtccaaaca
     8941 ccccacacaa gccctcgccc tatacgaata cgccaacccg cacaggggca ggcgtaccga
     9001 cgattaccgc ctcaaagaag gcggcaaccc cggcgcctac ttcccatgga atgcctacag
     9061 cacccaagac tgggaatttc tcggacatga ccggcgaagc agccatagaa aaaaaccgcc
     9121 atatcgcaaa tgccgccgta tacggccggc ccgaataccg ttacaacggc gcactcaacc
     9181 tgcactatcg tcccaaacgc accgacagca cgctgttgct caacggcggc atgaacctta
     9241 acggggaagt cttgattgag ggcggcaata tgattgtgtc aggcaggccc gtaccccatg
     9301 cctacgacca ccaggccaaa cgcgaacccg ttcttgaaaa cgaatggacc gacggcagct
     9361 tcaaggctgc acggttcacc ctacgaaacc atgcccgact gacagcaggg cgcaataccg
     9421 cgcatctgga cggcgacata accgcataca atctgtccgg catcgacctc ggctttatcc
     9481 aaggcaaaac accggaatgc taccgctcct accatagcgg cagcacccac tgcacaccca
     9541 acgccgtttt aaaagccgaa aactatcgtg cactacctgt aacgcaagta cgcggcgaca
     9601 ttacccttaa cgaccgttca gagctccgcc tgggcaaagc acacctgtac ggcagcatcc
     9661 gtgccggcaa agacaccgca gtccgcatgg aagcagacag caactggaca ctttcccagt
     9721 ccagccacac cggcgcactg acgcttgacg gcgcacaaat taccctgaac cccgatttcg
     9781 ccaataatac acacaacaac cgcttcaaca cactgaccgt caacggcaca cttgacgggt
     9841 tcggcacatt ccgattcctg accggcatcg tccgaaaaca aaatgccccc ccctcaaact
     9901 ggaaggggac agccgcggcg cattccaaat ccacgtcaaa aacaccggac aagaacctca
     9961 aacaaccgaa tcgcttgcac ttgtgagcct caatccgaaa cacagccacc aagcccgatt
    10021 caccctccaa aacggctatg ccgatttggg tgcctaccgc tacatcctcc gcaaaaacaa
    10081 caacggatac agcctgtaca acccgctcaa agaggccgaa cttcaaattg aagccacgcg
    10141 tgcggaacat gagcgcaacc aacaggcata caaccaatta caggcaaccg acatcagcag
    10201 acaggttcaa catgactctg acgcgaccag gtaggcacta caggcctggc agaacagtca
    10261 aaccgaactt gcccgcatcg acagccaagt ccaatatctg tccgcccaat tgaaacagac
    10321 agacccgctg accggcattc tgacgcgtgc ccaaaacctg tgtgccgcac aaggatacag
    10381 tgtcgatatc tgccgtcagg ttgccaaagc cgccgacacg aacgacctga cactcttcga
    10441 aaccgaactg gatacgtata tagaacgtgt agaaatggcc gaatccgaac ttgacaaagc
    10501 acggcaaggc ggcgatgcgc aagccgtcga aacagcccgg cacgcctacc tgaacgcact
    10561 caaccgtctg tcccgacaaa tccacagttt gaaaaccggc gttgccggca tccgtatgcc
    10621 gaacctggcc gaactgatca gccggtcggc caacaccgcc gtttccgaac aggccgccta
    10681 caataccggc cggcaacagg cgggacgccg catcgaccgc caccttaccg atccgcagca
    10741 gcaaaacatc tggctggaaa ccggtacgca acaaaccgac taccatagcg gcacacaccg
    10801 tccctaccaa caaactacca actatgcaca tatcggcatc caaaccggca tcaccgaccg
    10861 tctcagtgtc ggtacgattt taaccgatga gcgcacaaac aaccgttttg atgaaggcgt
    10921 atccgcccga aaccgcagca acggcgcaca tctgttcgtc aaaggggaaa acggcgcact
    10981 ctttgccgcg gcagatttag gctacagcaa cagccgtacc cgatttaccg attatgacgg
    11041 ggctgccgtc cgccgccacg catgggatgc aggcatcaac accggcatca aaatcgatac
    11101 cggcatcaac ctcagaccct atgccggcat ccgtataaac cgcagcaacg gcaaccggta
    11161 cgtactcgac ggcgcagaga taaacagccc ggcgcaaatc caaaccacat ggcatgccgg
    11221 catccgtctc gataaaaccg tcgaactggg tcaagccaag ctgacccccg ctttcagcag
    11281 cgattactac catacccgcc aaaacagcgg ttccgccctc agcgtcaacg accgtacctt
    11341 actgcagcaa gccgcccacg gcacactgca taccctgcaa atcgacgccg gatacaaagg
    11401 ctggaacgcc aaacttcatg ccgcttacgg caaagacagc aacaccgccc gccacaaaca
    11461 ggcaggaatc aaaataggct acaactggta acaagccgat aaaaatgccg tctggaaccc
    11521 gcgtttcaga cggcatttgc gttaaaaata gtaaaccgtt ccaaaaggga gtagaatagt
    11581 gccgtttcca accctgcgcc tgtaccgtca ggcttttatt atggaccttc ccagttcgtt
    11641 tttactgaac gccccttccg attccaaacg acaataacca tcccgccgga atgcctcccc
    11701 gcacacgacg ggcggagcat ttatgagcat cgaacacact cctccgacac acgacggcga
    11761 aaccggtcaa aaccatgccg aacgcccttc cgctgatttc gaccgtgtcc actccctctg
    11821 cgaaatcctc gaacctgcct ttgaacaaat cgaaaacggc acaccgctcg aagacgcgcc
    11881 gctgcgcgac aagctgaccg agctgaccgt cctcttgagc gagctgcacc ctgccgacgt
    11941 ggcggcagtg ttggaatcgc tgccgccgcg cgaacgcaat atcgtctgga ttctggtcaa
    12001 accggaagac gacggcgaag tcttgctgga agtgtccgat gcggtgcgcg aaacgctgat
    12061 cgagtcgatg gacaaagacg aattgttggc ggcggtcgat gatttggacg cggacgaatt
    12121 ggcggagctg gcagacgatt tgccgcacca agtggtttat gaagccttgc agacgcgcga
    12181 cgaggaagag cgcgcacaag tcaaagcggc aatgtcctac gaagacaacc aagtcggtgc
    12241 gattatggac ttcgagttgg tcagcatccg cgccgatgtc gcctgtgaag tggtgctgcg
    12301 ctatctgcgc cgcttcgaca gcctgcccga ccataccgac aagatttttg tggtcgatga
    12361 aaacgacgta ctgcaaggcg tgctgcccat ccgcaaactt ttggtcgccg atcccgaaga
    12421 tttggtggaa aacgtgatgg cgaaagatgt cgtgcgtttc cgcgccgaag acgacgtgga
    12481 agaagcagcg caggcattcg aacgctatga cttggttacc gcgcccgtcg tcgatgaaaa
    12541 caaaaagctc atcggcaggg tgaccgttga cgaaatggtg gacgtgatcc gcgaagaatc
    12601 cgaagcggat atgttgaaca tggcaggttt gcaggaagag gaagacctgt tcgcccccgt
    12661 cttggattcc gtcaaaaacc gctggatgtg gctcgccgtc aacctctgca ccgccttcct
    12721 cgccagccgc gtcatcggcg cgtttgaagg cagcatcgaa aaaatcgtcg cactcgccgc
    12781 gctgatgccc atcgtcgccg gcatcggcgg caactcgggc aaccagacga ttaccatgat
    12841 tgtccgcgcg atggcgatgg ggcaactgac aggcatgcag gcaggcaggc tgttgaaaaa
    12901 agaagtcggt gtcgccttgg tcaacggcat catttgggga acggtcatgg gcgcagtatc
    12961 ttggctgctt tacggcagcc tcggcatcgg gctggttatg attgccgcga tgacgctcaa
    13021 cctcctgctg gcggcaaccg tcggcgtatt aattcccgtg gtaatggaaa agttcggacg
    13081 cgatcccgca ctgggcagct cggtgctgat taccgccgtt accgactccg gcggcttcct
    13141 gattttcttg gggctcgcca ccctattcct gctttaaatg ccgtctgaac ccgcgcaaaa
    13201 atgccgtctg aagcggaagc tgcttcagac ggcatttgac tatttatcct tgttgcacaa
    13261 gattattgga cggtatgccg gggcagccct ttggcaacgc cgaccacatc ctccccgaac
    13321 agcgcgttga catcggtttc gtcaaacaca tatttgctgt ggcagaaatc gcaatcgact
    13381 tcgatgctgc cttgttccac caccacgccg ccgacttctt ccccgcccag catcaacagc
    13441 atatcgctga ctttgccgcg cgaacaggtg catgaaaatt caaacgtttc cggctcgaac
    13501 acgcgcggcg gcgtttcgtg gaacaagcgg tacaaaacat gttgcgcatc caattctgcc
    13561 aactcgcccg ccgtcagcgt gcgcgccagc gtactgacgt gttcccatgc ctcttcatcc
    13621 aacacctctt caggcagacg ctgcaccagc agaccgcccg ccgcttcatc gcttgcagac
    13681 aggacgatgt gcgtatcaag ctgttcggaa cgtttcatat agttcatcaa catttgcgcg
    13741 ataccgtcgc cttccaaagg cactacgccc tgccagggtt cgccgtcttt gggctgcagc
    13801 gtcagcacga atacgccgcc ctcgcccaaa agatcgacca aactttcatc ttcaccgatt
    13861 tctgcagcct cgtcccaccg cgcggtcgca cggacggtac ggtcggaagt cgcttccgca
    13921 accagcattt tcagccgccc ctgcccctga acctgcacaa tcagcgtgcc ttcgtttttg
    13981 aggttgcccg acagcagaac accggcagcc aacagctcgc ccaaggcgcg gcggatggcg
    14041 gcgggatagt ttttctgttt tacaatgtgc tgccactcgt tttccagacg gacgtgcagc
    14101 ccgcgcacgg gcatatcgtc gaagataaag cgggtacgca catcggcgcg gttgatggcg
    14161 gtttgattca tgattttctc tgactgattg ttcggatggc ggctatatgg ttgcggtcgg
    14221 cgcgaaaaca agacggacgg cggatgcgct tcccaaatta tcaataaatt atataaaaat
    14281 caacatatta actcaatcta acaagccgtt ttttgccaaa cagccgtttt tttatataca
    14341 atcaacaaga tattttcgac tgatacagca taacatcgca cggcggcacg atgcctcctg
    14401 cgcggaaaca ccgatatgga ttcttttttc aaaccggcag tttgggcggt tttgtggctg
    14461 atgtttgccg tccgccccgc ccttgccgac gagttgacca acctgctcag cagccgcgag
    14521 cagattctca gacagtttgc cgaagacgaa cagcccgttt tacccatcaa ccgagcc
//
LOCUS       DAXIFS010000031        14567 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.031, whole genome shotgun sequence.
ACCESSION   DAXIFS010000031 DAXIFS010000000
VERSION     DAXIFS010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14567
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.031"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..165
                     /locus_tag="ACFOCA_000712"
     CDS             <1..165
                     /locus_tag="ACFOCA_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
                     /protein_id="HFC6987463.1"
                     /translation="IFVNPLYNVGIGGGALLGHWVTQYSGISCIGVAGMLTAAAGLWV
                     CLNLNRHIRT"
     gene            294..1730
                     /locus_tag="ACFOCA_000713"
     CDS             294..1730
                     /locus_tag="ACFOCA_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFC6987464.1"
                     /translation="MPLLSVEFALFFLAFLPIYWGLAKYPSVQNLLLLAAGMGWLYHI
                     GPVFAAIIVLYSSCVYLLGELLRSDRENTRRFWLGCGIAASLTVLGFFKYFDFFRPMI
                     AQYAGKGGAIDILMPLGLSYYTFQSLAYLVYCFRAPHAARFSWHELLLHLSFFPTVTS
                     GPIIRAAAFKSADGEQAGALAQIRTRRARSPVRPALAVSLILLGIAKKWWLAGMLAEN
                     WVSPVFENPAQFDGWGVLGGVYGYTFQLFLDFSGYSDLVIGMAMLLGFRLPKNFSAPL
                     RALNIRAFWDKWHISLSTWIRDYIYIPLGGSKKGFLRTQLNLMAAMVLSGIWHGYGWN
                     FLIWGALHGTALVLLNTGDRYFGRNALCRLKYLAPLSWFVTFHFVCLSFVVFNTASPD
                     DAGAVFNALFANANGWNAPQQANMLLLASFASVMLLYPYLQRAFDGAVKGLEKIPMWL
                     WFIPISIILLLIIVLAPSGIPGFIYANF"
     gene            1741..2727
                     /gene="patB"
                     /locus_tag="ACFOCA_000714"
     CDS             1741..2727
                     /gene="patB"
                     /locus_tag="ACFOCA_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase PatB"
                     /protein_id="HFC6987465.1"
                     /translation="MKHFLSLFASILMSALIAAWFAQNPINAYWQQTYHRNSPLEPLA
                     AYGWWRSGAALQENAYTLSDGIKAFLSGETPPTAQDGGSADMPPEAAASEAAPQTGEI
                     QEWKQDTDTAAVRSGDKVFFAGDSLMQGVAPFVQKSLKQQYGIESVNLSKQSTGLSYP
                     SFFDWPKTIEETLKKHPEISVLAVFLGPNDPWDFPVGKRYLKFASDEWAQEYLKRVDR
                     ILEAAHTHRVQVVWLGIPYMKKAKLDGQMRYLDKLLSEHLKGKIILIPTAHTLSGGKD
                     RYTDSVNVNGKPVRYRSKDGIHFTAEGQKLLAAKIMEKIVFEPSTQPSSTQP"
     gene            2724..3917
                     /locus_tag="ACFOCA_000715"
     CDS             2724..3917
                     /locus_tag="ACFOCA_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFC6987466.1"
                     /translation="MNSKHLIAFSALFAATQAEALPVASVSLDTVTVSPSAPYTDTNG
                     LLTDYGNAAASPWMKKLQSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDG
                     GIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNTGDFPLGGILAHTGSGGSMTLTASDG
                     IASKQRVSLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTGAALPLTIHTEMPWDIGFI
                     NIENPAGGITVSAMGINGAQLTQWSKWRADRMNDLAQTGADLVILAYGTNEAFGDNID
                     IADTEQKWLDTVRQIHDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRIA
                     RQGQTMFWSWQNAMGGVCSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRA
                     AAIRQ"
     gene            4166..5719
                     /locus_tag="ACFOCA_000716"
     CDS             4166..5719
                     /locus_tag="ACFOCA_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HFC6987467.1"
                     /translation="MNRTYANFYEMLAAACRKNGNGTAVFDGKEKTAYRALKQEAEAV
                     AAYLQNIGVKFGDTVALAVSNSTEFITAYFAVSAIGAVAVPMNTFLKNSEYAYILNDC
                     KARFLFASAGLSKELAGLKAQTPVEKIIWTDKSRPAGEMAEGDAFFEDVRRFPEKPDL
                     GRQPRINDLAHIIYTSGTTGHPKGALISYANLFANLNGIERIFKISKRDRFIVFLPMF
                     HSFTLTAMVLLPIYMACSIILVKSVFPFSNVLKQALLKRATVFLGIPAIYTAMSKAKI
                     PWYFRWFNRIRLFISGGAPLAEQTILDFKAKFPRAKLLEGYGLSEASPVVAVNTPERQ
                     KARSVGIPLPGLEAKAVDEELVEVPRGEVGELIVRGGSVMRGYLNMPAATDETIVNGW
                     LKTGDFVTIDEDGFIFIVDRKKDLIISKGQNVYPREIEEEIYKLDAVEAAAVIGVKDR
                     YADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFKIPKQIHFKDGLPRNATGKVLKRV
                     LKEQFDGNK"
     gene            complement(5809..7836)
                     /locus_tag="ACFOCA_000717"
     CDS             complement(5809..7836)
                     /locus_tag="ACFOCA_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HFC6987468.1"
                     /translation="MSLSEFIERRTSFNPMVILTTLFFVCVLVVLVLTVPDQAQMWLD
                     RAKEVIFTEFSWFYVLTFSIFLGFLLILSVSSLGNIRLGRDEDVPEFGFLSWLAMLFA
                     AGMGVGLMFFGVAEPLMHYFSDITAGTPEHRQQQALLHTVFHWGVHAWSVYGTIALAL
                     AYFGFRYKLPLALRSCFYPLLKEKISGRFGDAIDIMALLATFFGIITTLGFGASQLGA
                     GLQEMGWIAENSFSVQVLIIAAVMSLAVVSAISGVGKGVKVLSELNLSLAFLLLFFVL
                     AAGPTVYLLSAFGDNIGNYLENLVRLSFKTYAYEREHKPWFESWTVLYWAWWCSWAPF
                     VGLFIARISKGRTIREFVFGVLLIPGLFGVLWFTVFGNTAIWLNDGVAGGMLEKMTSS
                     PETLLFKFFNYLPLPELTSIVSLLVISLFFVTSADSGIYVLNNITSRDKGLSAPRWQA
                     VMWGVLMSAVAVLLMRSGGLGNLQSMTLIVSLPFALLMLIMCFSLWKGLSADKKYFET
                     RVNPTSVFWTGGKWKERLVQIMSQTQEQDILKFLKHTASPAMHELQRELSEEYGLSVR
                     VDKMFHQDEPAIEFVIRKETMRDFMYGIKSVGQDVSDQLINDGNLPHIRHQTTYKPYA
                     YFFDGRVGYDVQYMNKDELIADILKNYERYLMLLDDVGQELMAHEQVELAE"
     gene            8125..10131
                     /locus_tag="ACFOCA_000718"
     CDS             8125..10131
                     /locus_tag="ACFOCA_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HFC6987469.1"
                     /translation="MADMKKITPQNLRPLLSESLGHTDFVNVLNALIKFLRRGGKKCA
                     GERFDLIIDTFKQDRELLSRFSRCFYIWLAQIHIYPALIKLGIFSRHSFAREMGIRIY
                     ERFSPSYKDFANLGEVFLYLFHSENDDKWLQTLNIRQWLVLYELIRSHAEPSKLQTAG
                     IRLADARLRAIEMLSVWTASEAIEPDLIRIAPRLLEADSSFVALQRETAKLVEHYRNG
                     TAPYDTAHLEVMFDQCFSQIDYLRRKGTGAGSGSSVKVAHLLERLRQTVDRLKLLTDI
                     QTGAGNSNRLTIALMNSLIYAAVEQYSTRHLRRSSIRMLARSITENKSHHGEHYITRN
                     RKEYFKMFYSAAGGGVIIALMALLKIRIGTLGLSPFLTSLSAGFNYGIGFMIIHMLHC
                     TVATKQPAMTAASFAEQVDLNEGGKAVDNKLAKLLIDVCRSQSVAVFGNVSIAILLAC
                     AISFGYAHLYRQPILDAHTAAYQFKSIDIIAYPTLWYAAIAGLWLFCSGIIAGFFDNR
                     ADYLNLRQRLPFNPLLRKIMRPGPRRVLAAYIHKHYGSLVGNFIFGMLLGMTGYFGHL
                     LGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIFSVLAIGLVNLCVSFSLALFVAL
                     RSRGTKIGSIRNLIKSFWNQIKSNPCILFLPPAKEQGHPPSDKP"
     gene            complement(10254..11345)
                     /gene="mltB"
                     /locus_tag="ACFOCA_000719"
     CDS             complement(10254..11345)
                     /gene="mltB"
                     /locus_tag="ACFOCA_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HFC6987470.1"
                     /translation="MKKRKILPLAICLAALSACTAMEARPPRVNEAQAPRADEMKKES
                     RPAFDAAAVPVSDSGFAANANVRRFVDDEVGKGDFSRAEWQDFFDKAAYKADIVKIMH
                     RPSTSRPWYVFRTGNSGKAKFRGARRFYAENRALIDDVAQKYGVPAELIVAVIGIETN
                     YGKNTGSFRVADALATLGFDYPRRAGFFQKELVELLKLAKEEGGDVFAFKGSYAGAMG
                     MPQFMPSSYRKWAVDYDGDGHRDIWGNIGDVAASVANYMKQHGWRTGGKILVSATLAP
                     GADVQAIIGEKTALTRTVADLKAYGIIPGEELADDEKAVLFKLETAPGVFEYYLGLNN
                     FYTVWQYNHSRMYVTAVRDIANSLGGPGL"
     gene            complement(11494..12921)
                     /locus_tag="ACFOCA_000720"
     CDS             complement(11494..12921)
                     /locus_tag="ACFOCA_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6987471.1"
                     /translation="MIHTEPSAQPSTMDTAAFLKHIESAFRRIFSDGIDLMRYLPEDK
                     WLALKQAGLLLPFLDKRHGGRKGSQFEIQEVLRIAGHYGVPVTLRTGIEGALVLQPLQ
                     EFGDEAQIAQGLDMVFKGEGGGLGVTEPETSGAAIAREMQSYYEYTDGQTIYVNAAKY
                     WQGNSQSDFLLVAAKERKNGKLAKVIDLLLVPKTYIRCETLASEGLRAVRYAVNRIDA
                     EMPATAVMKLSQSDAAGLRAFQNIFIRSRLQLIGMTHGIMEYILENLERYVRNDIRFV
                     DYERREIRRRHQVSEILYRYVCHSVSPVAPVAHQLMEANIVKTLATEYTYAAAQMLQK
                     LLGAKGFERGHTAGNIAIDIRPFTIFEGPNDMLYAEIYDQFVRATAEEKEAGMKLDKN
                     QTLLDRLQTDARFAAVARDYTLPEDIRSFLQEHTLTDACALQKVFIGKIIARLFVFVQ
                     AEHEDTAAFLLNDIRKDILDCRYCG"
     gene            13106..>14567
                     /locus_tag="ACFOCA_000721"
     CDS             13106..>14567
                     /locus_tag="ACFOCA_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HFC6987472.1"
                     /translation="MTYPIPKPREKSRWPNLSQGSLPLALARYLPHKRLKVVLTQDAE
                     QALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLF
                     VPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVR
                     GGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEA
                     QKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL
                     FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLP
                     DVSGKEHALPDLAVNRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGL
                     KAKSVSDWQGFLSAHEPLMITVAPLAYGFKLGGLQSPNQQQTTSASEGEGDAVTDQTE
                     FSASATNPLPSPLPQEREQSAAAVSDSLKAAAVSTES"
BASE COUNT         3343 a         4407 c         3680 g         3137 t
ORIGIN      
        1 atttttgtta atccactata caacgtcggt atcggcggcg gcgcgctgct ggggcattgg
       61 gttacgcaat actcgggcat ttcctgcatc ggcgttgcgg gtatgctgac ggcggcggca
      121 ggtttgtggg tctgcctgaa cctgaaccgc catatccgaa cctgaccgca cgatgccgtc
      181 tgaagcccct cccgcccttc agacggcatt ttgattgaag aaatatccac ccctgcttaa
      241 aataacgggc tttgccgtgt tttaacgcct attttttgtt ccaaggatgg tttatgccgc
      301 tgctgtctgt cgagttcgca ctgttctttc tcgccttcct gccgatttac tggggcttgg
      361 cgaaataccc gtccgtccaa aacctgctgc ttttggctgc cggtatgggc tggctctacc
      421 atatcggccc tgtatttgcg gcaatcatcg tcctttattc ctcctgcgtg taccttttgg
      481 gcgaactgct ccgttccgat cgcgaaaata cgcgccgttt ctggctgggg tgcggcattg
      541 ccgcctcgct gaccgtcttg ggctttttca aatatttcga ctttttccgc ccgatgattg
      601 cccaatatgc cggaaaaggc ggcgcaatcg acatcctgat gccgctgggg ctttcgtatt
      661 acaccttcca gtcgctcgcc tatctggttt actgcttccg cgccccgcac gccgcgcgtt
      721 tcagctggca cgagctgctg ctgcacctga gttttttccc caccgttacc tccggcccga
      781 ttatccgcgc cgccgcattc aaaagcgcag acggcgagca ggcaggcgca ttggcgcaaa
      841 tccgtacccg ccgagcgcgt tcgcccgtcc gccccgcact cgccgtttcc ctgattctgc
      901 tgggtattgc caaaaaatgg tggctggcgg ggatgctggc ggaaaactgg gtgtcgcccg
      961 tatttgaaaa tcccgcccaa ttcgacggct ggggcgtatt gggcggcgtg tacggctata
     1021 ccttccaact ctttttagac ttttccggat attccgattt ggttatcggc atggcgatgc
     1081 tgctgggctt taggctgccc aaaaatttct ccgcaccgct tcgtgcttta aacatccgcg
     1141 cattttggga caaatggcac atcagccttt ccacctggat acgcgactac atctacatcc
     1201 ccttgggcgg cagcaaaaaa ggctttttac ggacacagct caacctgatg gcggcaatgg
     1261 tgctctcagg catctggcac ggctacggct ggaacttcct catttggggc gcgctgcacg
     1321 gcacggcact ggtgctgctc aacacgggcg atcgctattt cggacgcaac gcgctatgcc
     1381 gtctgaaata ccttgcgccg ctctcgtggt ttgttacctt ccatttcgtc tgccttagct
     1441 ttgttgtctt caataccgca agccccgacg atgcaggcgc agttttcaat gccctctttg
     1501 ccaatgccaa cggctggaat gcgccgcaac aggcaaacat gctgctgctt gcctcgtttg
     1561 catccgtgat gctgctctac ccttacctgc aacgcgcttt cgacggcgcg gtcaaaggtt
     1621 tggaaaaaat cccgatgtgg ctgtggttta tcccgatttc catcatcctg ctgctgatta
     1681 tcgtccttgc cccctcgggg atacccggtt ttatttatgc caatttttaa gggtttggac
     1741 atgaaacact ttctttccct tttcgcttcc atattgatgt ctgccctgat tgccgcgtgg
     1801 tttgcccaaa acccgatcaa tgcctactgg cagcagacct accaccgcaa cagcccgctc
     1861 gaaccgcttg ccgcctacgg atggtggcgg agcggtgcgg cgttgcaaga aaacgcctac
     1921 accctttcag acggcatcaa agccttcctg tccggcgaaa cgccgccgac ggctcaagac
     1981 ggcggttcgg cagatatgcc gcctgaagcc gccgcatccg aagccgcccc tcaaaccggc
     2041 gaaatccaag aatggaaaca ggacaccgac accgccgccg tccgcagcgg cgacaaagtc
     2101 tttttcgccg gcgactcgct gatgcagggc gttgcaccct tcgtgcaaaa aagcctgaaa
     2161 cagcaatacg gcatcgaatc cgtcaacctc agcaaacaaa gcacggggct gtcctacccc
     2221 tcattcttcg actggccgaa aacgattgaa gaaaccctga aaaaacatcc cgaaatcagc
     2281 gtgctcgccg tcttcctcgg cccgaacgac ccgtgggatt tccccgtcgg caaacgctac
     2341 ctcaaattcg cttccgacga atgggcgcaa gaatacctga aacgcgtcga ccgcatcctt
     2401 gaagccgcac acacgcaccg cgtccaagtc gtctggctcg gcatccccta catgaaaaaa
     2461 gccaagctcg acgggcagat gcgctacctc gacaaactgc tttcggaaca tttgaaaggc
     2521 aaaatcatcc tgattcccac cgcgcacacc ctgagcggcg ggaaagaccg ctacacggac
     2581 tccgtcaacg tcaacggcaa acccgtccgc taccgcagca aggacggcat acactttacc
     2641 gccgaaggac aaaaactgct ggcggcaaaa ataatggaaa aaatcgtttt tgaaccaagt
     2701 acgcaaccat caagtacaca gccatgaatt ccaaacacct catcgcattt tccgccctgt
     2761 tcgccgccac gcaggcagaa gccctgcccg tcgcctccgt cagcctcgac accgttaccg
     2821 tttccccgtc cgccccctac accgatacaa acgggctctt gaccgactac ggcaatgccg
     2881 ccgcctcgcc ttggatgaaa aaactccaat ccgtcgcaca aggcagcggc gagaccttcc
     2941 gtatcctgca aatcggcgac tcgcataccg ccggcgactt ctttaccgac agcctgcgca
     3001 aacgcctgca aaaaacttgg ggcgacggcg gcataggctg ggtttacccc gccaacgtca
     3061 aagggcagcg catggcggcc gtccggcaca acggtaactg gcaaagcctc accagcagga
     3121 acaacaccgg agacttcccg ctcggcggca tcctcgccca caccggcagc ggcggcagca
     3181 tgaccctgac cgcatcggac ggcatagcaa gcaagcagcg cgtttccctg tttgccaaac
     3241 ccctgcttgc cgaacaaacc ctgaccgtca acggcaacac cgtctccgcc aacggcggcg
     3301 gctggcaggt actggatacg ggcgcggcac tgcccctgac catacacacc gaaatgccgt
     3361 gggacatcgg cttcatcaac atcgaaaatc ccgccggcgg cattaccgtt tccgcgatgg
     3421 gcatcaacgg cgcacaatta acccagtggt cgaaatggcg tgccgaccgt atgaacgacc
     3481 ttgcccaaac cggcgccgat ctagtcatcc ttgcctacgg taccaacgaa gccttcggcg
     3541 acaacatcga cattgccgac actgaacaaa aatggctgga taccgtccgc caaatccacg
     3601 acagcctgcc tgccgccggc atcctcatca tcggcgcgcc cgaatccctg aaaaacacgc
     3661 tcggcgtatg cggcacacgc cccgtccgcc tgaccgaagt ccaacagatg cagcggcgca
     3721 tcgcccgtca ggggcagacg atgttctggt cttggcaaaa cgcgatgggc ggcgtttgca
     3781 gcatgaaaaa ctggctcaac caaggatggg ccgccaaaga cggtgtacac ttctccgcca
     3841 aaggctaccg gcgcgcggcg gaaatgctcg ccgacagcct cgaagaactc gtccgcgccg
     3901 ccgcaatcag gcaataatcg gacaggaggc ggacggtatt tccgcaacag ggggatgccg
     3961 tctgaaacgc ataccttcat attgcttcag acggcattcg cctcagacat tggaaagacg
     4021 caggcgaacc tccggcatac ggcgcaaagg cggcgtttga tatgccgtct gaaggcaaag
     4081 atgataaact gccgccttcc gttttcatac ggcatattgt tttcaaatga gggcgttcgc
     4141 cgtccgcaac cataaaggaa gtttcatgaa ccggacttat gccaatttct acgaaatgct
     4201 cgccgccgcc tgccgcaaaa acggcaacgg cacggcagtg ttcgacggca aggaaaaaac
     4261 cgcctaccgc gcgctcaagc aggaggccga agccgtcgcg gcgtatctgc aaaatatcgg
     4321 cgtgaagttc ggcgacacgg tcgcgctggc ggtttccaat tccacagaat ttattaccgc
     4381 ctatttcgcc gtctccgcca tcggcgcggt cgccgtaccg atgaacacat ttttgaaaaa
     4441 cagcgaatac gcgtatatcc tgaacgactg caaggcgcgc ttcctgttcg cctcggcggg
     4501 cctgtcaaaa gagttggcgg gcttgaaggc gcaaacgccc gtcgaaaaaa tcatttggac
     4561 ggacaaaagc cgtccggccg gcgaaatggc ggaaggcgat gccttttttg aagacgtgcg
     4621 ccgcttcccc gaaaaacccg acttgggccg ccaaccccgg ataaatgatt tggcacacat
     4681 catctacacc tccggcacga cggggcatcc caaaggcgcg ctaatcagtt acgccaacct
     4741 gttcgccaac ctgaacggca tcgaacgcat ctttaaaatc tccaagcgcg accgctttat
     4801 cgttttcctg ccgatgttcc acagcttcac gctgacggct atggtgctgc tgccgattta
     4861 tatggcgtgt tcgattattt tggtcaaatc cgttttcccg ttttccaacg ttttgaaaca
     4921 ggccctgctc aaacgcgcga ccgtgttttt gggcataccc gcgatttaca ccgcaatgag
     4981 caaggcgaaa atcccttggt atttcagatg gttcaaccgc attcgcctgt ttatcagcgg
     5041 cggtgcgcct ttggcggaac aaaccatcct cgatttcaaa gccaagttcc cccgcgccaa
     5101 attgctggaa ggctacggac tgagcgaagc ctctcccgtc gtcgccgtca atacgcccga
     5161 gaggcaaaaa gcccgcagcg tcggcatccc cctgcccggt ttggaagcca aagccgtcga
     5221 tgaagaattg gtcgaagtgc cgcgcggcga agtgggcgaa ctgatcgtca ggggcggttc
     5281 ggtgatgcgg ggctacctca atatgcctgc cgccaccgat gaaaccatcg tcaacggctg
     5341 gttgaaaacg ggcgatttcg ttaccataga cgaagacggc tttatcttta tcgtcgaccg
     5401 caaaaaagat ttgattattt ccaaaggtca aaacgtctat ccgcgcgaaa tcgaagaaga
     5461 aatctacaaa ctcgatgccg tcgaagccgc tgccgtcatc ggcgtgaaag accgttatgc
     5521 cgacgaggaa atcgtcgcct tcgtccaatt gaaggaaggt atggatttgg gcgagaacga
     5581 aatccgccgc cacctgcgta ccgtgctggc aaatttcaaa atccccaaac aaatccactt
     5641 taaagacggg ctgccgcgca acgctacggg caaggtattg aaacgggtgt tgaaggagca
     5701 gtttgacgga aacaaatgaa cgccgtgccg tccgaagccc cgtccggcaa aaaaaatgcg
     5761 gtgaatctgc ttcaccgcat tttttggcaa acgccggagc gaggatattt actctgccaa
     5821 ttccacctgc tcgtgcgcca tcagttcctg accgacatca tccaacaaca tcaaataacg
     5881 ttcgtagttt ttcaaaatgt cggcaatcag ctcgtccttg ttcatatact gcacatcgta
     5941 cccgacgcgc ccgtcgaaaa aataagcgta gggtttgtaa gttgtctgat gccggatatg
     6001 cggcaggttg ccgtcgttaa tcaactggtc ggatacatcc tgcccgacag acttaatccc
     6061 gtacataaaa tcgcgcatcg tctctttccg aatgacgaac tcgattgcgg gctcgtcctg
     6121 atgaaacatc ttatcgaccc ggacgctcaa gccgtattct tccgaaagct cccgttgcaa
     6181 ctcgtgcata gcgggcgatg cggtatgttt gaggaatttt aaaatatcct gctcctgcgt
     6241 ctggctcatt atctgcacca gccgttcttt ccacttgccg cccgtccaaa atacactggt
     6301 agggttaacc cgggtctcaa aatatttctt atccgcactc aatcctttcc acaggctgaa
     6361 acacattatc agcatcagca gggcaaacgg cagggaaaca atcagggtca tagactgcag
     6421 gttgcctagc ccgcccgagc gcatcagcaa aacggcaacg gcagacatca gcacgcccca
     6481 cataaccgcc tgccaccgtg gtgcgctcaa gcccttgtcc cgagaggtaa tattgttcag
     6541 gacataaatc ccggaatcgg cagaagttac aaaaaacagg gaaatgacca gcaggctgac
     6601 gatgctcgtc aattcgggca gggggaggta attaaagaat ttaaaaagca gcgtttccgg
     6661 agaggaggtc atcttttcga gcattccccc cgcaaccccg tcattcagcc aaatcgccgt
     6721 attgccgaag acggtaaacc acaaaacgcc gaacaggccg gggatgagca aaaccccgaa
     6781 gacaaactcg cggatggtgc gcccctttga aatgcgcgcg ataaacaaac ccacaaacgg
     6841 cgcccaagaa caccaccacg cccaataaag caccgtccaa gattcaaacc acggcttgtg
     6901 ttcccgttcg tacgcataag ttttaaaact gaggcgcacc agattttcga ggtagttccc
     6961 tatgttgtcg ccgaatgccg acaacaggta aacagtgggg cccgccgcca aaacaaaaaa
     7021 cagcagcaaa aacgcaaggc tcaggttcaa ctcgctcaac accttcacgc ccttccccac
     7081 gccggatatt gccgaaacga cggcgaggga catgacggcg gcgataatca aaacctgcac
     7141 gctgaagctg ttttcggcaa tccagcccat ttcctgcaat ccggcgccca gttgcgaagc
     7201 cccgaacccc aatgtggtga tgatgccgaa aaaagtagca agcaacgcca taatatcaat
     7261 ggcatcgccg aaccttccgg aaattttttc tttcaacagg gggtaaaaac aagaacgcag
     7321 ggcaagcggc agcttgtagc ggaaaccgaa ataagccaaa gccaatgcaa tcgtaccgta
     7381 caccgaccaa gcgtgaacgc cccaatggaa caccgtgtgc agcaatgcct gctgctgcct
     7441 gtgttccggc gtgccggccg taatgtccga aaaataatgc atcaacggct ctgccacgcc
     7501 gaaaaacatc agacccacgc ccatcccggc cgcaaacagc atcgccagcc acgacaggaa
     7561 gccgaattcc ggcacatctt catcccgtcc gagcctgatg tttcccaaac tgctgaccga
     7621 gagtatcagc aggaaaccca gaaaaatgga aaacgttaaa acataaaacc agctgaactc
     7681 ggtaaaaatg acttcttttg cccgatcgag ccacatctgc gcctgatccg gcacggttaa
     7741 aaccaatacc accaaaacac acacaaaaaa caaagtcgtc aaaataacca tcggattaaa
     7801 tgacgttcgg cgttctataa attcagacag ggacaaacct tctcactcct ttgttaaaaa
     7861 cagacaaacc cggtcatcgg gcaaagcggt caaaacctgc cggtaaaata ccggcttccg
     7921 gatgacgaaa tgcacaaacc ggccgaaatt gttataatcg aaaaaattaa aaatcaatac
     7981 ggattattct atcagattga tttatcgata tttattatat cattaatata gtttgatttc
     8041 aaaccggcgg aaaatgcgcc gcccaccgca ggcgcgccct ccccgctatc ggggcgttta
     8101 acgccggatt gccgatgcgg tacaatggct gatatgaaga aaattacccc tcaaaacctg
     8161 cgccccctgc tttcggaaag cttgggacat accgattttg tcaacgtcct caacgcactg
     8221 attaaatttt tgcgccgtgg cggcaaaaaa tgtgcggggg aacgtttcga cctgattatc
     8281 gacacattca aacaagacag ggaattgctg tcccgcttca gccggtgttt ttacatctgg
     8341 ctcgcgcaaa tacacattta tccggcactc atcaaactcg gcatcttctc gcgccacagc
     8401 tttgcccggg aaatgggcat acgcatctac gaacgcttca gcccgtcata taaagatttt
     8461 gccaacttgg gcgaagtctt cctttatctt ttccattccg aaaacgacga caaatggctg
     8521 caaacgctca atatccgcca atggctggtt ttatacgaac tcatccggag ccacgccgaa
     8581 ccgtccaaat tgcagacggc gggcatccgc cttgccgatg cgcgtttgcg cgccatcgaa
     8641 atgctgtctg tctggacggc atccgaagcc atcgaacccg acctcatccg catcgccccg
     8701 cgcctgctgg aagccgattc ttccttcgtc gccctccaac gcgaaaccgc caaactggtc
     8761 gaacactacc gcaacggcac cgcgccttac gacaccgccc acctcgaagt gatgttcgac
     8821 caatgtttca gccagattga ctatttgcgc cgcaaaggga cgggcgccgg ctccggttcg
     8881 tcggtcaaag tcgcccacct gctcgaacgg ctccggcaga ccgtagaccg tctgaagctg
     8941 ctcaccgaca tccaaaccgg cgccggcaac agcaaccgcc tgaccatcgc gctgatgaac
     9001 tccctcatct acgcggcggt cgaacaatac agcacccgcc acctgcgccg cagcagcatc
     9061 cgtatgctcg cccgcagcat taccgaaaac aaaagccacc acggcgaaca ctacatcacc
     9121 cgcaaccgca aagaatattt caaaatgttc tactcggcgg caggcggcgg cgtcatcatc
     9181 gccctgatgg cgctgctcaa aatccgcatc ggcacactcg gcctcagccc cttcctcact
     9241 tccttgtcgg ccgggttcaa ctacggcatc ggctttatga tcatccatat gctgcactgc
     9301 accgtcgcca ccaagcagcc cgcgatgact gccgccagct ttgccgaaca ggtcgatctc
     9361 aacgaaggcg gcaaagcggt ggacaacaaa ctcgccaagc tcctcatcga cgtatgccgc
     9421 tcccaaagcg tcgccgtctt cggcaacgtt tccatcgcca tccttttggc gtgcgccata
     9481 tcgttcggct atgcccatct gtaccggcag cccatactcg atgcccacac cgccgcctac
     9541 cagttcaaat ccatagacat catcgcttac ccgacgctgt ggtatgccgc cattgcaggt
     9601 ctgtggctgt tctgctccgg catcatcgca ggttttttcg acaaccgcgc cgactacctc
     9661 aacctgcgcc aacgcctgcc tttcaacccc ttgctgcgta aaatcatgcg ccccgggccc
     9721 cgccgcgtcc tcgccgccta catccacaaa cactacggct cgttggtagg caacttcatc
     9781 ttcgggatgc tcttgggtat gaccggctat ttcggacacc tcctcgggct gccgctggac
     9841 atccgccacg tcgccttttc ctccgccaac ctcggctatg ccgccgtcag cggcaacgtc
     9901 ggtttgggca cgttcgtact cggcattttc agcgtcctcg ccatcggcct ggtcaacctc
     9961 tgcgtcagtt tcagcctcgc cctcttcgtc gccctgcgct cgcgcggcac gaaaatcggc
    10021 agcatccgca atctgattaa aagtttttgg aatcagatta aaagcaatcc ctgcatactt
    10081 ttcctcccgc ccgccaaaga acagggacat cctccttcgg acaagccttg accggcaatg
    10141 ccgtctgaag cgggattcgc cccgaatacc gccctgatgc gggaaatccc cataaaagga
    10201 tgcaaaaatg ccgtctgaat cgaaacgtgg ttcagacggc attttaaaaa acattacaat
    10261 cccgggccgc caagcgaatt ggcaatgtcc ctgaccgccg ttacatacat ccgactgtga
    10321 ttgtactgcc ataccgtata aaaattgttc aagcccaaat aatattcaaa cacgccgggt
    10381 gcggtttcca gtttgaacaa aaccgccttt tcatcatcgg caagctcttc gccggggatg
    10441 atgccgtacg ccttcaaatc cgccaccgtc cgcgtcaggg cggttttttc gccaatgatt
    10501 gcctgaacat ccgcacccgg cgccaatgtt gcagacacca gtattttccc gcccgtgcgc
    10561 caaccgtgct gcttcatata attggcaacc gatgccgcga catcgccgat gttgccccat
    10621 atgtcccgat gtccgtcccc gtcataatcc accgcccatt tccggtagct cgaaggcata
    10681 aattgcggca tccccattgc gcccgcatag ctgcctttaa aggcgaaaac atcgccgcct
    10741 tcttcttttg ccagctttaa aagctcgacc aattcttttt ggaaaaaccc ggcgcggcgg
    10801 gggtaatcaa agcctaaggt cgccaatgcg tccgccacac ggaaactgcc cgtatttttg
    10861 ccgtaattcg tttcaatccc gataaccgcc acgataagtt cggcaggcac gccgtatttt
    10921 tgcgccacat catcgataag cgcgcggttt tccgcataaa accggcgcgc gccgcgaaat
    10981 ttcgccttgc ccgaatttcc cgtgcggaac acataccacg gacgcgatgt ggagggtcgg
    11041 tgcataatct tgacgatgtc cgccttgtaa gccgctttgt caaaaaaatc ctgccattcc
    11101 gcccgggaaa aatccccttt cccgacttca tcgtccacaa aacggcggac atttgcattg
    11161 gcggcaaacc cgctgtcgga taccggtacg gctgccgcgt caaacgcggg gcggctttct
    11221 tttttcattt catccgcgcg gggggcttgg gcttcattta cccggggcgg gcgtgcctcc
    11281 atcgccgtac aggcagacaa agccgccaaa caaattgcca gcggcagtat ttttctcttt
    11341 ttcataaata tgttccgaac aaatagggta agtgggaaag cggcgcaagg ggcgcggtgc
    11401 gaaatgcggc atccgccgca atcggcggct ttgtggaata ccgcgcgttg ccttttgcac
    11461 cgcctgaaat ccgtatgccg ccgtatttgc ccgctatccg caatatcggc agtccaatat
    11521 atctttgcgg atgtcgttca gcaggaaggc tgcggtgtct tcgtgttccg cctgtacgaa
    11581 gacaaagagt cgggcgatga ttttgccgat gaagactttt tgcagggcgc aggcgtcggt
    11641 cagggtgtgt tcctgcagga agctgcggat gtcttcgggc aaagtgtagt cgcgggcgac
    11701 ggcggcaaag cgggcatcgg tttgcaggcg gtcgagcagg gtttggtttt tgtccaactt
    11761 catgcctgct tctttttctt cggcggtggc gcggacgaac tggtcgtaaa tttcggcata
    11821 aagcatatcg ttcgggcctt caaaaatcgt gaagggacgg atgtcgatag cgatattgcc
    11881 ggcggtgtgt ccgcgttcaa aacccttcgc gcccaaaagt ttttgcaaca tttgcgcggc
    11941 ggcgtaagtg tattccgtgg cgagggtttt gacgatgttc gcctccatca gctgatgggc
    12001 gacgggtgca acgggcgaaa cggaatggca gacgtagcgg taaagaatct cggaaacctg
    12061 atggcggcgc cggatttcgc ggcgttcgta atcgacgaat ctgatgtcgt tgcggacgta
    12121 tcgttccagg ttttcaagga tgtattccat aatgccgtgc gtcatgccga tcagttgcag
    12181 gcggctgcgg ataaagatgt tttggaacgc gcgcaaacct gcggcgtcgc tctgggagag
    12241 tttcatcacg gcggttgcag gcatttcggc atcgatgcgg ttgacggcgt aacggacggc
    12301 gcgcaagcct tcggatgcga gggtttcgca gcggatgtat gttttgggga cgagcagcag
    12361 gtcgatgact ttggcgagtt tgccgttttt gcgttctttg gcggcaacga ggaggaagtc
    12421 gctttgcgag ttgccctgcc agtattttgc ggcgttgacg taaatggttt gtccgtcggt
    12481 atattcgtag taagactgca tttctcgggc aatcgccgcg ccggaggttt cgggttcggt
    12541 aacgcccaaa ccgccgccct cgcctttgaa aaccatgtcc aaaccctgtg cgatttgcgc
    12601 ttcatcgccg aactcttgca gtggctgcaa caccagcgcg ccttcgatgc cggtacgcag
    12661 cgtaacgggt acgccgtaat gccccgcaat ccgcaatact tcctgaattt caaactggct
    12721 gcccttgcgg ccgccgtgtc ttttgtcgag gaagggcaac agcaaacccg cctgcttcaa
    12781 ggcaagccat ttgtcttcgg gcaggtatcg catcaggtcg ataccgtctg aaaaaatgcg
    12841 gcggaatgcg gattcgatgt gctttaaaaa agcagccgtg tccatagttg acggctgcgc
    12901 gctcggttcg gtgtgtatca tcggcttcct ctgtcggttc ccattaatcg gcggccggtc
    12961 aaaccgcctg ccacagttta gagttgattt tctaaacttt accacaaagt gcgccgggca
    13021 acaatccgcc ggcttttcag acggcatcgc gcaccctccc gtgctaaaat gaccgtttgc
    13081 atcactgtcc gccgattgcc gcactatgac ctaccccatc cccaaacccc gtgaaaaatc
    13141 ccgttggccc aatctttcgc aaggctcgct gcccttggct ttggcgcgtt atctgccgca
    13201 caagcggctc aaggtcgtgc tgacccaaga tgcggaacag gcgttgcgcc ttcagacggc
    13261 atggcggttt ttccgtccgc acgacacggc ggtgttcttg ccggactggg aaacgctgcc
    13321 ttacgagcgt ttttctccgc atcaggattt ggtgtcggag cggctctcgg cgttgtggca
    13381 gattaagagc ggcgcggcgg acgtgttgtt tgtgccggtt gccacggcga tgcagaagct
    13441 gccgcccgtg ccgtttttgg cggggcgcac gttttggctg aaaacaggac agactttgga
    13501 tataggccgt ctgaaaaccg atttggtaga tgcgggctac aaccatgttt cccatgttgt
    13561 tgcggcgggc gagtttgccg tgcgcggcgg cattgtcgat ttgttcccca tgggcagcga
    13621 aatgccctac cgcatcgatt tgtttgacga tgaaatcgac agcatcaaaa cctttgatac
    13681 ggacacgcag cgcaccatct cccccgtttc cgaaatccgc ctgctgccgg cgcacgaatt
    13741 ccccaccgac agcgaggcgc aaaaaatctt ccgcagccgc ttccgcgagg aagtcgatgg
    13801 taatccgaac gatgcggctg tatacaaagc agtaagcaac ggccacttcg gtgcgggcgt
    13861 ggaatattac ctgccgctgt tttttgaaaa cgagctggaa acgctgtttg actatatcgg
    13921 cgaagacgcg ctgtttgtct ctttgggcga tgttcacgcc gaggcaaacc gcttttggag
    13981 cgacgtcaaa tcgcgttacg ccatggcgca gggcgacgaa acctatccgc ctttgcttcc
    14041 acagcatttg tatctctctg ccgatgtttt tgcaggccgt ctgaaaaact acggacaggt
    14101 gctgcccgat gtttccggca aggaacacgc cctccccgac cttgccgtca accgacaatc
    14161 cgacgagcct ttgcaggcat tgaaggattt tcagacggcg tttgaaggac ggattttgct
    14221 gtgcgccgaa agtttgggac ggcgcgaaac catgctcggc ttcttgcagc aaaacggttt
    14281 aaaagccaaa agcgtgtctg attggcaagg cttcttgtcg gcacatgagc cgctgatgat
    14341 tacagtggca ccgttggctt acggattcaa actgggcgga ttgcaatccc cgaaccagca
    14401 gcaaactact tccgcctccg aaggagaagg cgatgcggtt accgaccaaa ccgaattttc
    14461 cgcatccgca acaaaccctc tccctagccc tctcccacag gagagggaac aaagtgcagc
    14521 cgccgtttca gacagtctga aagcagccgc cgtttcaacc gaaagca
//
LOCUS       DAXIFS010000032        14232 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.032, whole genome shotgun sequence.
ACCESSION   DAXIFS010000032 DAXIFS010000000
VERSION     DAXIFS010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14232
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.032"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..184
                     /locus_tag="ACFOCA_000722"
     CDS             <1..184
                     /locus_tag="ACFOCA_000722"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987473.1"
                     /translation="YIYDCKGCGLYAGHYGGNTVWEAAASRGIGTAGDAPMPSGVKAG
                     QSAVWKKAMESVGRRS"
     gene            complement(300..1106)
                     /locus_tag="ACFOCA_000723"
     CDS             complement(300..1106)
                     /locus_tag="ACFOCA_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6987474.1"
                     /translation="MWHWDIILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQG
                     LAQHPYAQHLAVGTSFAVMVFTAFSSMLGQHKKRAVDWKTVFAMMPGMIFGVFTGALS
                     AKYIPAFGLQIFFILFLTAVAFKTLHTGRQTASRPLPKLPGLTAVSTLFGTMSSWVGI
                     GGGSLSVPFLIHCGFPAHKAIGTSSGLAWPIALSGAISYLLNGLNIAGLPEGSLGFLY
                     LPAVAVLSAATIAFAPLGVKTAHKLSSAKLKKSFGIMLLLIAGKMLYNLL"
     gene            complement(1107..1853)
                     /gene="pssA"
                     /locus_tag="ACFOCA_000724"
     CDS             complement(1107..1853)
                     /gene="pssA"
                     /locus_tag="ACFOCA_000724"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFC6987475.1"
                     /translation="METPTNTPQRSLRQNSIYLLPNSFTIAALFSAFYAITQSMHGRY
                     ETAAIAVFISMLLDGMDGRVARLTNSQSAFGEQLDSLADMVSFGVAPALIAYKWQLWQ
                     FGKIGYSVAFIYCACAALRLALFNTLIGKVDKRWFIGVPSPTAAALIVGLIWVNHSVE
                     KFPAVHWWALGITLFAGLSMIVQIPFWSFKEINIRRQVPFVGMLLAVLLLLLVTWEPS
                     LVLFLFFLGYSLSGYIMAARRFWKKYRKAD"
     gene            2436..2918
                     /locus_tag="ACFOCA_000725"
     CDS             2436..2918
                     /locus_tag="ACFOCA_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HFC6987476.1"
                     /translation="MMKKILAVSALCLMTAAARAADTYGYLAVWQNPQNADDVLQVKT
                     TKEDSTKSEAFAELEAFCKGQDTLAGIAEDEPTGCRSVVSLNNTCVALAYPKALGAMR
                     VENAVVITSPRFTSVHQVALNQCIKKYGVQGQCGLETVYCTSFSYYGGTVRSLIQNLK
                     "
     gene            complement(2970..4181)
                     /locus_tag="ACFOCA_000726"
     CDS             complement(2970..4181)
                     /locus_tag="ACFOCA_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease family protein"
                     /protein_id="HFC6987477.1"
                     /translation="MNQLKLAVSGAQILFVAFGAMVLVPLLTGLNPALALLGAGLGTL
                     LFQITTKRKVPIFLGSSFAFIAPIIYSVGEWGLPSTMFGLFAAGFMYFVFAALIRWRG
                     LAAVHKLLPPVVIGPVIMVIGLSVAVAASSMAMGQADGKQVIDYTDSLILSGFTFAVT
                     AIVSVFGSRMMKLIPILIGVASGYVLALLMGLVDTASIAHAPWFAVPHFETPQVNWQA
                     ALFMLPVAVAPAIEHIGGIMAIGNVTGKDYTKDPGLDKTLAGDGLGVCVAGLIGGPPV
                     TTYGEVTGAVMITKNSNPVIMTWAAVFAVCMAFFGKFNAFLASIPMPVMGGIMLLLFG
                     TIASLGVKTLIDAKVDLMLPKNLVIVSSVLTTGIGGMTLKLGSFSFAGVGLCAVLAIM
                     LNSLLPDPKES"
     gene            4404..6842
                     /locus_tag="ACFOCA_000727"
     CDS             4404..6842
                     /locus_tag="ACFOCA_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6987478.1"
                     /translation="MTEKSHKKTAKGRAGSPSPTSARNKKADNGARGNKVSERLKAVK
                     ELQKTETKKARPEHVVNLIGDALWLMGLAATLYLAISLISFDMGDPSWSHSSPVVEDV
                     ANWGGLFGAYVADVGYYLFGWSFWWWIAAACVMLYKNFRLHAKQTENEAYNHKIAAAA
                     LFVLTVFSPVLEYFVLGGKYADSLPVGAGGMVGIRVGAVFAWLLGKSGSLLIILVVLL
                     LSLSLLVQISWLEFLNGAGRAVQNRLSALSGKVMALGKRRPNTKTDGVDTQNTRRMVK
                     EAKNITAKPVALPEGSSSNRKSVAVSVAPSPKIQVSLFEDDEPRQAGEYHKPTLNLLR
                     IPDSEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGVKGSQ
                     IVALSKDLARSMSLQSVRIVETIAGKNTMGIELPNDKRQDVMLSEILSSPVFAEAKSK
                     LTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPDEVRFIM
                     IDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLEGFN
                     QKVEAAKAAGKPLLNPFSLNPDSPEPLEKLPMIVVVIDELADLMMTERKAVEQQIARL
                     AQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELL
                     KYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETAN
                     IVNPNADSDELFDQAVAYVLESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPTD
                     LNGSRKILAHKDHL"
     gene            7051..8361
                     /gene="tig"
                     /locus_tag="ACFOCA_000728"
     CDS             7051..8361
                     /gene="tig"
                     /locus_tag="ACFOCA_000728"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFC6987479.1"
                     /translation="MSVTVETLENLERKVVLSLPWSEINAETDKKLKQTQRRAKIDGF
                     RPGKAPLKMIAQMYGASAQNDVINELVQRRFHDVAVAQELKVAGFPRFEGVEEQDDKE
                     SFKVAAIFEVFPEVVIGDLSAQEVEKVTASVGDAEVDQTVEILRKQRTRFNHVEREAR
                     NSDRVIIDFEGKIDGEPFAGGASKNYAFVLGAGQMLPEFEAGVVGMKAGESKDVTVNF
                     PEEYHGKDVAGKTAVFTITLNNVSEATLPEVDADFAKALGIADGDVAKMREEVQKNVS
                     REVERRVNEQTKESVMNALLKAVELKAPVALVNEEAARLANEMKQNFVNQGMADAANL
                     DLPLDIFKEQAERRVSLGLILAKLVDENKLEPTEEQVKAVVANFAESYEDPQEVIDWY
                     YAEPSRLQAPTSLAIESNVVDFVLGKAKVNEKALSFDEVMGAQA"
     gene            8457..9071
                     /gene="clpP"
                     /locus_tag="ACFOCA_000729"
     CDS             8457..9071
                     /gene="clpP"
                     /locus_tag="ACFOCA_000729"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFC6987480.1"
                     /translation="MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDES
                     ANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAAS
                     MGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLM
                     AKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQILENRASLQF"
     gene            complement(9128..10393)
                     /gene="ispG"
                     /locus_tag="ACFOCA_000730"
                     /gene_synonym="gcpE"
     CDS             complement(9128..10393)
                     /gene="ispG"
                     /locus_tag="ACFOCA_000730"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFC6987481.1"
                     /translation="MNTLQRRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQ
                     IKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPE
                     CGKALSKYRINPGNVGKGVKGDEKFAFMIRTAAENDKAVRIGVNWGSLDQSLAKRMMD
                     ANLASSAPKPPEEVTKEALIVSALESAEKAVLLGLPEDKIILSCKVSAVQDLIQVYRE
                     LGSRCAYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGSPRTQEV
                     VVGQEILQTMGLRSFTPMVTACPGCGRTTSTVFQELAQDVQNYLRQKMSIWRTLYPGV
                     ESLNVAVMGCVVNGPGESKLADIGISLPGTGETPVAPVYVDGERKITLKGDNIATEFL
                     AIVEEYVKTNYGENGSKRNQNKIIPIQSL"
     gene            complement(10409..11170)
                     /gene="pilW"
                     /locus_tag="ACFOCA_000731"
     CDS             complement(10409..11170)
                     /gene="pilW"
                     /locus_tag="ACFOCA_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HFC6987482.1"
                     /translation="MPFKPSKRISLLLVLALGACSTSYRPSRAEKANQVSNIKTQLAM
                     EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD
                     SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA
                     EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK
                     IAKALGNAQAAYEYEAQLQANFPYSEELQTVLIGQ"
     gene            complement(11173..12267)
                     /gene="rlmN"
                     /locus_tag="ACFOCA_000732"
     CDS             complement(11173..12267)
                     /gene="rlmN"
                     /locus_tag="ACFOCA_000732"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFC6987483.1"
                     /translation="MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNE
                     MTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGT
                     LCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVM
                     MGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVS
                     LHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR
                     ELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDI
                     DAACGQLAGQVQDKTRRQQKWQQILIGQQG"
     gene            complement(12410..12835)
                     /gene="ndk"
                     /locus_tag="ACFOCA_000733"
     CDS             complement(12410..12835)
                     /gene="ndk"
                     /locus_tag="ACFOCA_000733"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFC6987484.1"
                     /translation="MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTL
                     KEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGT
                     IRADFATSVSINAVHGSDSVENAALEIAYFFSQTEICPR"
     gene            complement(12894..14045)
                     /gene="zapE"
                     /locus_tag="ACFOCA_000734"
     CDS             complement(12894..14045)
                     /gene="zapE"
                     /locus_tag="ACFOCA_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HFC6987485.1"
                     /translation="MSNRDQLFKAPPFENHSPLTWYQAASQLPNFIRDDAQAAAIEHL
                     DRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKR
                     RVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRL
                     LENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRT
                     LRPAEIFFTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDF
                     RALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLIDVLYDFRVKLCA
                     TGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG"
BASE COUNT         3482 a         3497 c         3894 g         3359 t
ORIGIN      
        1 ttatatatat gattgcaaag gttgcggctt gtatgccggt cattatggcg gaaataccgt
       61 ttgggaggca gccgcatcgc gtggaatcgg cacggcaggc gatgcgccga tgccttcggg
      121 cgtgaaggcg gggcaatcgg cagtttggaa aaaggcaatg gaatctgtgg gcagaagaag
      181 ttaagggtaa aagtcgggcg cacggtcagg ttgtctgtcc ttttgtcgga acaggagact
      241 gggcagcttt gtcctgatta attgcttgtg caaacggtaa aaaggttttt tcgtgtgttt
      301 taaagcaggt tgtacagcat ttttccggca atcaaaagca gcataatgcc gaaggatttt
      361 ttgagtttgg cagaagaaag tttgtgggcg gttttgacac cgagcggggc aaaggcaatg
      421 gttgccgcgc tgaggacggc gacggcgggc aggtaaagga agcccagtga cccttcgggc
      481 aatcctgcaa tattcaggcc gttgagcaga tacgatattg cgccggagag tgcaatcggc
      541 caggcaaggc cggatgatgt gccgatggct ttatgggcgg ggaagccgca gtggattaag
      601 aaggggacgg aaagtgaacc gccgcctatg ccgacccagc tcgacattgt gccgaacagt
      661 gtggaaaccg cagtcagtcc gggcagcttg ggcagcgggc gggatgccgt ctgacgaccg
      721 gtatgcagtg ttttgaatgc gacggcggtt aaaaacagga tgaagaaaat ttgaagcccg
      781 aacgcgggga tatattttgc ggagagtgcg cccgtgaata cgccgaatat catacccggc
      841 atcatcgcaa atacggtttt ccagtcgacc gcccgttttt tgtgctgccc caacatactg
      901 gaaaaggcgg tgaagaccat gacggcgaag gatgtgccga cggcgaggtg ttgcgcgtaa
      961 ggatgttgtg ccaaaccctg caaatcaagc acccataaaa cgacagggac aatcagcgtg
     1021 ccgccgccta cgccgaacag accggcaata aaacctgccg cactgcctac ggcaagcagg
     1081 attaagataa tgtcccaatg ccacatttaa tccgcctttc tgtatttttt ccaaaatcgg
     1141 cgtgccgcca taatgtagcc ggacaggctg tatccgagaa agaacaggaa gaggacgagc
     1201 gacggttccc aagtgaccag aagcagcagt aagacggcaa gcagcattcc gacaaagggg
     1261 acttgtctgc ggatgttgat ttctttaaaa ctccaaaaag ggatttggac aatcatcgac
     1321 aggccggcaa acagtgtgat gcccaatgcc caccagtgga cggcggggaa tttttcgacg
     1381 ctgtggttga cccaaatcag cccgacaatc agcgcggcgg cagtcggact gggcacgccg
     1441 ataaaccagc gtttgtccac cttgccgatg agtgtgttga acagggcgag gcgcagggcg
     1501 gcgcaggcgc agtagatgaa ggcgacggaa taaccgattt tgccgaactg ccaaagctgc
     1561 catttgtagg caatcagagc gggagcaacg ccgaagctga ccatatcggc aaggctgtcg
     1621 agctgctccc cgaacgcgct ttggctgttg gtcagccgcg ccacgcgccc gtccataccg
     1681 tccagcaaca tagagatgaa taccgcgatg gcggcggttt cataacgtcc gtgcatggat
     1741 tgggtgattg cataaaatgc ggaaaacagc gcggcgatgg taaaggagtt gggcagcagg
     1801 tagatactgt tttgacgcag ggagcgttgc ggggtgttgg tcggggtttc catagctgaa
     1861 gtgtctcacg gacgtggaga atcgataggg gattataacc caaaccatta tcgaacaata
     1921 cgccctttag gatgaagccc tcggaggcgg tttgtttttc tgatggcgga tgctttgcgg
     1981 ggcggtttga ctctgcctgc caccgggtgt gttgtttcgg atttttgccg gatggatatt
     2041 gttgccgggc atttctgggc ttgccggaag gtatcggggg gagggcatcg gaatatgcgg
     2101 cgcaccgttc aaaccggggc ggcgtttccc tattttcagg gggttgcagg tttcaacaaa
     2161 ttgaaagata ttttttgcat ttccgaccgt atgctgattt tgaagcggga taaattatag
     2221 gacaaggttt ttcgcccgcc gcaaaggttg gccgcaatgc cgtctgaaaa caacggcttg
     2281 ccgctaaggc ggcggtatgc ggatttgcgc tgccgaaatc ggtttgccat acccggcggt
     2341 gcaatctgcg gggagggata agccgataag gcgggactta tcctgttttt tgtttataat
     2401 gcaacagaat ttggacgaac cgtcgggaat ttatcatgat gaaaaagata ctggccgtat
     2461 cggcactatg cctgatgact gcggcggcac gggctgccga tacttacggc tatctcgccg
     2521 tttggcagaa tccgcagaat gcggacgatg ttttgcaggt taaaaccaca aaagaagatt
     2581 cgacgaaaag cgaagcgttt gccgagttgg aagccttctg caaaggtcag gacacgcttg
     2641 cgggcattgc cgaagacgag ccgaccggat gccggtcggt cgtgtcgctg aacaatacct
     2701 gtgtcgcgct ggcatacccg aaagccttgg gcgcgatgcg cgttgaaaac gccgtcgtga
     2761 ttacttctcc gcgttttacg agcgttcatc aggtcgcact caaccagtgc atcaaaaaat
     2821 acggcgtaca gggacaatgc ggcttggaaa cagtgtattg cacatctttt tcttattacg
     2881 gcggaactgt gcgctctttg attcaaaatc tcaaataaaa cggaaaatgc cgtctgaaag
     2941 atgttcagac ggcatttcta tatcgacggt caggattctt tcggatcggg cagcaggctg
     3001 ttcaacataa tggcaagtac ggcgcacaag cccacgccgg caaagctgaa gctgcccaat
     3061 ttgagcgtca tgccgccgat gcccgtggtc agtaccgagc tgacgatgac caggtttttc
     3121 ggcagcatca aatcgacttt ggcatcaatc aacgttttca cgcccaaaga agcaatcgtg
     3181 ccgaacagca gcagcataat gccgcccatt actggcatcg gaatggaagc caaaaacgca
     3241 ttgaatttgc cgaaaaacgc catgcagacg gcaaaaaccg ccgcccaagt catgatgacg
     3301 gggttgctgt ttttggtaat catcaccgca cccgttactt cgccgtaggt cgtaaccggc
     3361 gggccgccga tcagacccgc aacgcatacg cccaaaccgt cgcctgcaag ggttttgtcc
     3421 aagcccgggt ctttcgtata gtctttcccc gtcacattgc cgattgccat gatgccgccg
     3481 atgtgttcga tggcgggggc gacggcaacg ggcagcataa acagtgcagc ctgccagttg
     3541 acctgaggcg tttcaaaatg gggaacggcg aaccagggcg cgtgtgcaat gcttgccgtg
     3601 tccaccagtc ccatcagcag tgccaaaaca taacccgaag cgacaccgat caagatggga
     3661 atcagcttca tcatcctgct gccgaaaacc gatacgatgg cggtaacggc aaaggtaaag
     3721 ccggaaagaa tcagcgaatc ggtatagtcg atgacctgtt tgccgtccgc ctgacccatt
     3781 gccatgctgc ttgccgccac ggcaacagac agaccgatga ccatgatgac ggggccgatg
     3841 acgaccggag gcagcagttt gtgtaccgct gccagtccgc gccaacggat cagcgcggca
     3901 aacacaaaat acataaagcc ggcggcaaac agtccgaaca tggtggaagg cagcccccat
     3961 tcgccgacgg agtagataat cggtgcgata aaggcaaacg aagaaccaag aaaaatcggc
     4021 actttgcgtt tggttgtgat ttggaacagc agcgttccca agcctgcgcc caaaagcgca
     4081 agagccggat tcagaccggt cagcagggga accagcacca ttgcgccgaa tgccacaaat
     4141 aaaatctgcg cgccggaaac ggcaagtttc agttggttca taccatcttc tttcaatcgg
     4201 ttcaaacggc acggattata ctggtttgcc gagggtctgc gtaaaaatac atatggcggg
     4261 caacagatat gccgtctgaa aggcaatgtc tgtctgttgc aggatgaaag caggagaaat
     4321 ggagtataat ccgacacttt ccatattcaa tccgcaagcc gtccggcttc cttatttcag
     4381 acggcatttt ccggtaatac ggcatgacag aaaaatccca taaaaaaaca gcaaaaggca
     4441 gggcgggaag cccgtcccca acgtccgcac gcaacaagaa agccgacaac ggcgcacggg
     4501 gcaataaagt ttccgagcgg ctcaaggcgg tcaaagagtt gcagaaaacc gaaaccaaaa
     4561 aggcgcgtcc cgaacatgtc gtcaacctta tcggcgacgc actgtggctg atgggtttgg
     4621 cggcaacctt gtatttggcg atttccctga ttagtttcga tatgggcgat ccgtcttggt
     4681 cgcacagttc gccggttgtg gaagatgtcg ccaattgggg cggactgttc ggcgcgtatg
     4741 ttgccgatgt cggctattat cttttcggct ggtcgttctg gtggtggata gcggctgcct
     4801 gcgtcatgct gtataaaaat tttcgtctgc acgcaaaaca gacggaaaac gaggcataca
     4861 accacaaaat cgctgccgcc gcgctgtttg tcctgacggt cttcagcccc gtcttggagt
     4921 attttgtgct gggcggaaaa tatgccgact ccctgcctgt cggagcaggc ggtatggtcg
     4981 gcatacgcgt cggcgcagtg tttgcgtggc tgctggggaa atcgggcagc ctgctgatta
     5041 tcttggttgt tctgctgttg tcgttgtccc tgctggtgca gatttcatgg ctggaatttt
     5101 tgaacggtgc gggcagggcg gttcaaaacc gcctgagtgc cttatccggc aaggtcatgg
     5161 ctttgggaaa acgccggccg aataccaaaa cagacggtgt cgatacccaa aatacacggc
     5221 gcatggtaaa agaagccaag aatattacgg ccaaacccgt tgccttgccc gaaggcagca
     5281 gcagcaaccg caaatccgtc gcggtttccg tcgcgccgtc gcccaaaatt caggtttctc
     5341 tgtttgaaga tgacgaacct cggcaggcgg gcgaatacca caagcctaca ttgaacctat
     5401 tgcggattcc tgacagcgaa cccgtcagca tcaatcccgc cgaattggag cgcactgccg
     5461 aactgatcga atccaaactg gcagaattcg gcatcggcgt acaagtcgta tccgccacat
     5521 ccggtcccgt catcacgcgc tacgaaatcg aacccgcgca aggtgttaaa ggcagccaaa
     5581 ttgttgcctt gtcgaaagat ttggcacgct ctatgtcgct gcaatccgtg cgtatcgtcg
     5641 aaaccatcgc aggtaaaaac acgatgggca tcgagttgcc caacgacaaa cgccaagacg
     5701 tgatgttgag cgaaatcttg tcctcgcccg tgtttgccga agccaaatcc aagctgaccg
     5761 tcgcgctggg caaagacatt gccggtaccc ccgttgtcgg cgacttggcg aaaatgccgc
     5821 accttttggt cgccggtatg actggttcgg gcaagtccgt cggcgtgaac ggcatgatta
     5881 tgtctatgct tttcaaagct acgcccgacg aagtccgctt tatcatgata gacccgaaaa
     5941 tgcttgagtt gagcatttac gacggcattc cgcacctgct ctgtcccgtc gtgaccgata
     6001 tgcgcgaagc ggggcaggcg ttgaactggt gcgtcgccga aatggaaaaa cgctaccgcc
     6061 tgctttccca cgccggtgta cgcaatctgg aaggcttcaa ccaaaaagtc gaagccgcaa
     6121 aagcggcagg caagccgctg ctcaatccgt tcagtctgaa ccccgacagc cccgagcctt
     6181 tggaaaaact gccgatgatt gtggtcgtta tcgacgaact tgccgacctg atgatgaccg
     6241 aacgcaaagc cgtcgagcag caaatcgccc gtctcgccca aaaagcgcgc gccgccggta
     6301 tccatatgat tgtcgccacc caacgtccca gtgtcgatgt cgttactggc ctgattaaag
     6361 ccaacatccc gacgcgtatg gcgtttaccg tgcaaagcaa aatcgacagc cgtaccatcc
     6421 tcgaccaaat gggcgcggac gaactgctca aatatggcga ttcgctgttc ctccagcccg
     6481 gcagtgccga accgacccgc ctgcaaggcg cgtttgtttc agacgacgaa gtacatcaag
     6541 tcgtcaacta cgtcaaatcg caagccccag ccgactatat tgaaggtctg ctcagcggcg
     6601 aggccgcgct ggaaactgcc aatatcgtta atccgaatgc agacagcgac gaattgttcg
     6661 atcaggcagt cgcctatgtt ttggaaagca aaaaaacctc catttcgtct ttgcagcggc
     6721 agttgcgtat cggctataac cgcgcggcaa acctgatgga ggcactggaa aatgcgggtg
     6781 tcgtttctcc caccgacctc aacggcagcc gtaaaatttt ggcgcacaag gaccatttgt
     6841 agctcgtatt gcaaaatgcc gtctgaacgg cggaattggc gtttcagacg gcatattatg
     6901 tttcaggcgg aacattgtga tatacttgcc agctaaaatc tcccctttgc ggcaatgcgg
     6961 ttcaaatatc cgtaccgttg cgctgtttgc ttccccatgc agggaagaaa gtttaccatt
     7021 ttatcaacac aacaaattta agggcttatg atgagcgtaa ctgttgaaac tttagaaaat
     7081 ctggaacgca aagtagtgtt gtccctgcct tggtccgaaa tcaacgcaga aaccgataaa
     7141 aaactgaaac aaacccagcg ccgtgcaaaa atcgacggtt tccgcccggg taaagcacct
     7201 ttaaaaatga ttgcccaaat gtacggtgcg agcgcgcaaa acgacgtgat caacgagctg
     7261 gtgcaacgcc gcttccacga tgttgccgtt gcccaagagt tgaaagtggc aggcttcccc
     7321 cgttttgaag gcgttgaaga acaagacgat aaagaatctt tcaaagttgc cgccattttt
     7381 gaagtgttcc ccgaagtcgt tatcggcgat ttgtctgcac aagaagttga aaaagtaacc
     7441 gcttccgtcg gtgatgccga agtggaccaa accgtagaaa tcctgcgcaa acaacgcacc
     7501 cgcttcaacc atgtcgaacg cgaagcccga aacagcgacc gcgtcatcat tgactttgaa
     7561 ggcaaaatcg acggcgaacc ttttgcaggc ggcgcatcca aaaactacgc cttcgtattg
     7621 ggcgcaggtc aaatgctgcc tgaatttgaa gccggcgtag tcggcatgaa ggctggcgaa
     7681 agtaaagacg ttaccgtcaa cttccctgaa gaataccacg gcaaagacgt tgccggtaaa
     7741 actgccgtgt tcaccattac gctgaacaac gtttccgaag cgactctgcc tgaagtcgat
     7801 gcagattttg caaaagcctt gggtattgcg gatggcgacg ttgccaaaat gcgcgaagaa
     7861 gtgcagaaaa acgtaagccg cgaagtggaa cgccgcgtaa acgaacaaac caaagaatcc
     7921 gtaatgaacg cgctgctcaa agccgtagag ctgaaagcac ctgttgcttt ggtcaatgaa
     7981 gaagccgcac gcttggcaaa cgaaatgaaa caaaattttg ttaaccaagg tatggctgat
     8041 gctgccaact tggatctgcc tttggatata ttcaaagaac aagccgaacg ccgcgtatct
     8101 ttgggtctga ttttggccaa actggttgat gaaaacaaac tggaaccgac tgaggagcaa
     8161 gtcaaagccg ttgtcgccaa cttcgcagaa agctacgaag atcctcaaga agtaatcgac
     8221 tggtactacg cagagccttc ccgcctgcaa gccccgactt ctttggcgat agaaagcaac
     8281 gtcgttgatt tcgttttggg taaagccaaa gtaaacgaaa aagctttgtc ttttgacgaa
     8341 gtgatgggcg cgcaagcctg attatcctga aaatgccgtc ttagggcagt ttttgaaagc
     8401 accgaagccg cttttaaagc ccgctttggt gcttttacat catgaaagga gacgaaatgt
     8461 cttttgataa ctatcttgtc cctaccgtta tcgagcagag cggtcgcggt gagcgtgcat
     8521 tcgatatcta ttctcggctt ttgaaagagc gcatcgtatt cttggtcggc ccggtaaccg
     8581 acgagtccgc caatctggtg gttgcccaac tgttgttttt ggaaagtgag aatccggata
     8641 aggatatttt cttctatatt aactcgccag gcggttcggt aacggccggt atgtcgattt
     8701 acgacaccat gaattttatc aagcccgatg tatcgacttt gtgcttgggg caggcagcaa
     8761 gtatgggcgc gttcttattg tcggcaggcg aaaaaggcaa acgtttcgcc ctgcccaaca
     8821 gccggattat gattcaccag cctttaatca gcggcggctt gggcggtcag gcatccgata
     8881 ttgaaattca cgcacgcgaa ctgttgaaaa tcaaagaaaa actcaaccgc ctgatggcga
     8941 aacattgcgg ccgcgatttg gcagatttgg agcgcgacac cgaccgtgat aatttcatgt
     9001 ccgccgaaga ggctaaagaa tatggtctga ttgatcaaat cttggagaac cgtgcttctt
     9061 tacagtttta ataagaaatc tgagagaaac aaatgtcgtc tgaaaacagt tcaggacggc
     9121 atttgtctta tagggactgt atagggatga ttttgttctg gttgcgtttg gagccgtttt
     9181 caccatagtt ggttttgaca tattcctcta caatagctag gaattcagtt gcaatattat
     9241 cacctttcag tgttattttg cgctccccgt ccacataaac cggcgcgacg ggtgtttctc
     9301 ccgtaccggg aaggctgatg ccgatgtcgg ccaatttgct ttctccgggc ccattgacaa
     9361 cgcagcccat tacggcaacg ttcagggatt caaccccagg ataaagggta cgccatatag
     9421 acattttttg gcgcaggtaa ttttgaacat cttgtgccag ctcttgaaat acggtactgg
     9481 tggtacgccc gcagccgggg caggcggtaa ccatcggcgt aaacgaacgc aatcccatag
     9541 tttgtaaaat ctcttgcccg acgacgacct cctgagtacg cgggctgcca ggttccggag
     9601 tcagtgaaat gcggatggtg tcgccgattc cttcttgaag caagacggat aatgccgccg
     9661 ttgatgcgac aatgcctttg ctgcccatac cggcttcggt caaacccaaa tgcagcggat
     9721 aggcgcaacg gctgcccagt tcgcggtaaa cctgaatcaa atcctgaacc gcgctgactt
     9781 tgcacgacag gatgattttg tcttcgggca gtcccaatag aacggctttt tcggcagatt
     9841 ccaaagcgga gacaatcagt gcttccttcg tcacttcttc gggcggtttc ggcgcggaag
     9901 aagcgaggtt ggcatccatc atacgtttgg cgaggctttg atccaaagaa ccccagttta
     9961 cgccgatgcg gacggcttta tcgttttcag cagcagtccg aatcataaag gcaaattttt
    10021 catcgccttt tacgcctttg ccgacattgc cgggattgat gcggtatttg gacaatgctt
    10081 tgccgcattc gggaaattcc gccaacaggc gttcgccgtt gaagtggaaa tcgccgataa
    10141 gtggtgtggc atagcccata tcgtccaagc ggcggcggat ttcggcaact ttggacgcgg
    10201 cttcggggct gttgacggta atacgcacca tttcggatcc ggcatcgctc aattccttaa
    10261 tctgcaatgc ggtggctttt gcatcggcag tgtcggtgtt ggtcatagat tggataacga
    10321 cgggtgcttc tgaaccgacg gtaatatgat cgatgcggac ttgatgcgtc ttgcggcgtt
    10381 ggagtgtgtt catatggttt gaatctgttt attgaccgat gaggacggtt tgcaattctt
    10441 ccgagtaggg gaaattcgcc tgcaattgtg cttcatattc gtatgccgcc tgtgcgttgc
    10501 cgagggcttt ggcaattttc cagcctagca gcaaatcatc ggcctgaagg acttctaccc
    10561 tgctttggta ttttttaaag tagtaatcgg catcgcccaa ctgcccggcc agcattttgg
    10621 tgcgcgccag ttctttaaat gcgggtggga actgcggctg ggcggcgagg gaacgtttca
    10681 aataggcttc cgccaatccg aattgcccct gttttgcgct gcatatgcct ttattcaggt
    10741 tggcaatata aggggtcggg taggtggggt cggccagggc tttgtcgaaa tatgccatag
    10801 attcggcagg gcggttgagc ctgccgcaca ggaaccagcc gtagttgttg ttgatttcgg
    10861 cactgtcggg tttgatggag agggcttgcc ggaaactttc ctgcgccttg tcgttaactt
    10921 tcaggtattg atagatttcg gcacggacca gccaggcaag ctcgttttta gggtccgatt
    10981 tcagggcgtc ttcaatactt gccgtcgcct gacggtagtc ctgaccgcgc atatattcca
    11041 ttgccaactg ggttttgata ttggaaacct gattggcttt ttctgcccgc gaggggcggt
    11101 aggaagtgct gcacgcgccc aaggcaagga caagtaataa agagattcgt ttggatggct
    11161 taaaaggcat aattacccct gttgtccgat taaaatctgc tgccattttt gttggcggcg
    11221 cgttttatcc tgaacctgcc ccgccaactg tccgcaggcg gcatcgatgt cgtcgccgcg
    11281 cgtttttcgt acggtaacga caaatcctgc ctgctgcaaa atatcgcgga acacacggat
    11341 gttctcattg ctggagcgtt cgtatccaga gtttggaaag ggattgaacg gaatcagatt
    11401 gaacttgcag ggaacatctt tgaccagttc gatcagttcg cgcgcatgtt gcgccttatc
    11461 gtttattccg tccaacatga cgtattcgaa agtgatgaaa tccctgggtg ctttgactag
    11521 atagcgttgg catgcagcca tcaattcttt caagggatat tttttgttca acggtacgat
    11581 ttggttgcgg acttcgtcat tggaagcgtg gagggaaacc gccaaagcca ccggcatgac
    11641 atcgcgcaac ctgtccattt ggggaaccat acccgaagtg gaaacggtta cgcggcggcg
    11701 gctcaaaccg tagccgtggt cgtccagcat gatgcttaag gcggtaacga cattgtcgaa
    11761 gttcgccatc ggctcgccca tacccatcat cactacattg gaaattacgc gttcgttttt
    11821 cggtgtaaca cccatcgctt tgtttgccca ccacaattgc ccgatgattt cggcagcagt
    11881 caaattgcgg ttgaagccct gccggccggt cgaacaaaat gtacattcca aagcgcagcc
    11941 gacttgtgag gaaatgcaga gcgtgccgcg atccgattcg gggatgaaga cggtttccac
    12001 cccgttgccc gtaccgacat ccaaaagcca ttttcgagtg ccgtctgaag atttttgaga
    12061 catcatcagc ttgggaattt cgatgcctgc ctgttcgttc agtttatggc gcaacgattt
    12121 tgccaaatcg gtcatttcgt taaaattttg cgcgccggat tggtgcatcc aacgcataac
    12181 ctgtttggca cggaagggtt tttcgcccat atcggcaaaa tgtcgggtca gcccttgaag
    12241 gtcgtagttg agcagattgg ttttcatgtg tttgtgtttt tcttaaatta aggcttcaaa
    12301 taaaaaattg cagggcaggc aagtttgatt tgaagccttt tgcgacagag ttttcagacg
    12361 gcatggatat atttatgccg tctgaagagg agttgtgcgg tgtattgtat caacgggggc
    12421 agatttcggt ttggctgaaa aagtaggcaa tttccaaagc ggcattttcc acgctgtcgg
    12481 aaccgtgtac ggcattaatg ctgaccgaag tggcaaagtc cgcgcgtatc gtgccttcgg
    12541 cggcttcgga aggattagtt gcacccatca gttcgcggtt tttcaggacg gcgttttcac
    12601 cctctaatac ctgaatcata accggaccgc cggtcataaa ttcaaccaat ccggcgtaga
    12661 aggggcggtc tttatgaacc gcataaaatt cttgcgcctc tttgagagta agctgcttca
    12721 ttttggcggc aacgattttc agaccgttct cctcaaagcg gctgtatatt ttgccgataa
    12781 catttttgcc gacggcatcg ggtttgatga tggagatggt acgttcaatc gccatgctat
    12841 atccttattt ttacttaaga agaatcaaat cggtattcta tcaaaaaaat aacttatccg
    12901 cctgaagcct tgggagatag ggtcaggtgc ggctgttcca aataaacttc ggactgcatt
    12961 tcgaccatcc ggctggcggt gcgggtaaat tcttcggcaa aatcgccttc cgtatagata
    13021 tggttgacat ctaccgcgcc ggtggcacac agtttgaccc ggaaatcgta gagtacgtca
    13081 atcagccaag tcagccgccg cgcctccgcc ttttcttgcg gtgagagttg ttccaaacct
    13141 gaaataaaaa ccatttcata atgttcggcc aaatacagat agtcggactg tgagcggggg
    13201 ccgaagcaca gtgcgcggaa atcaaaccat atggcacggc cggactcggc tttgtgggga
    13261 atctcccgac catggatggt gctgatgccg gggttcaaat cggtaatgcc tgtcatttct
    13321 ttgaacagtt ttgccagttt tgcctcattt tcttcattgg caggcgtaaa gaaaatctcg
    13381 gcggggcgga gggtacgcag tcggtagtct tcaccgccgt caacgtttaa gacggtcagg
    13441 ctggactcga tgagcgcgat tgtgggaaga aaactgctcc ggttttgacc ttgcgggtag
    13501 agttcggaag gcgcgtagtt tgaagtcgcc accaaaacaa cgccctcgtt aagcaggttt
    13561 tccagcagac ggcctaaaat cattgcatcc gcaatatcgc tgacatgaaa ttcgtcaaaa
    13621 cataatacgc gggtttcttt ggcaatctcg gcggcaacgg atttcaacgg gttgctttcg
    13681 cttttcaggg ttttcagcct ctggtggatt tctgccataa aggcatgaaa gtggacgcgg
    13741 cgtttgcggc ggtaagggag gcagccgaaa aaagcgtcca tcagaaagct tttgccgcgt
    13801 ccgaccccgc catagaaata aagccctttg gggacttgcg gggaacgcaa actcctgcct
    13861 aaaaaacggt ttcttttgcg tttgaacatc atcaattcgg tccaaagccg atcgaggtgt
    13921 tcgatggcgg ctgcctgcgc gtcgtcgcgg atgaagttgg gcagttgtga ggcagcctga
    13981 taccaggtca gcgggctgtg gttttcaaac ggcggggctt taaaaagttg gtctctatta
    14041 ctcatattta accttgttat acttcttgcg gcggagaaag aaaatgctta ccgtcggtat
    14101 tataaatgat ttccttcaaa cttggcattt tccgtggaaa agaataatga cgcgcacaag
    14161 ggggtataag caaaggcggc gtttcaatat ggtgcagata tgagctcaaa tgccttttat
    14221 agtagattaa at
//
LOCUS       DAXIFS010000033        13826 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.033, whole genome shotgun sequence.
ACCESSION   DAXIFS010000033 DAXIFS010000000
VERSION     DAXIFS010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13826
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.033"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(164..1429)
                     /gene="ftsY"
                     /locus_tag="ACFOCA_000735"
     CDS             complement(164..1429)
                     /gene="ftsY"
                     /locus_tag="ACFOCA_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFC6987486.1"
                     /translation="MFSFFRRKKKQETPAPEEAQVQETAAKAESEVTQIVENIKEEVE
                     SLTESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVG
                     EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
                     VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPET
                     KEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNN
                     VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
                     MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
                     VPVRYIGVGEGIDDLRPFDARAFVDALLD"
     gene            1575..3143
                     /gene="msrAB"
                     /locus_tag="ACFOCA_000736"
     CDS             1575..3143
                     /gene="msrAB"
                     /locus_tag="ACFOCA_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional peptide-methionine (S)-S-oxide
                     reductase MsrA/peptide-methionine (R)-S-oxide reductase
                     MsrB"
                     /protein_id="HFC6987487.1"
                     /translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
                     DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH
                     EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI
                     NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
                     DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
                     TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
                     EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
                     EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
                     AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
                     MDAAGYGALKSKVK"
     gene            complement(3245..3730)
                     /locus_tag="ACFOCA_000737"
     CDS             complement(3245..3730)
                     /locus_tag="ACFOCA_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFC6987488.1"
                     /translation="MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFD
                     QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
                     GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
                     V"
     gene            complement(3757..4605)
                     /locus_tag="ACFOCA_000738"
     CDS             complement(3757..4605)
                     /locus_tag="ACFOCA_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFC6987489.1"
                     /translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
                     AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
                     AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
                     EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
                     EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
                     IHIINS"
     gene            complement(4699..5700)
                     /locus_tag="ACFOCA_000739"
     CDS             complement(4699..5700)
                     /locus_tag="ACFOCA_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6987490.1"
                     /translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
                     NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPGSAP
                     VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
                     GLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
                     SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREV
                     QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
     gene            5759..6439
                     /locus_tag="ACFOCA_000740"
     CDS             5759..6439
                     /locus_tag="ACFOCA_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HFC6987491.1"
                     /translation="MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSES
                     AASDLRQEYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTKLHGMADTEHTLCR
                     LNGRKAVFSNGPSFYVRAVVGALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDV
                     PPECCIMVDDSADNLHQAKALGMKTVWFGAKSHALSFIDACARDMAQLARYAETLSEH
                     RQTHYNTL"
     gene            6465..6737
                     /locus_tag="ACFOCA_000741"
     CDS             6465..6737
                     /locus_tag="ACFOCA_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex protein"
                     /protein_id="HFC6987492.1"
                     /translation="MRKTFLILMTTAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYY
                     QDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR"
     gene            6792..8162
                     /gene="glmU"
                     /locus_tag="ACFOCA_000742"
     CDS             6792..8162
                     /gene="glmU"
                     /locus_tag="ACFOCA_000742"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFC6987493.1"
                     /translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHEIGGETMLGRVIDTAA
                     ALNPQNICVVVGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLAAEGRTLVLY
                     GDVPLIDVETLETLLEAAGNEVGLLTDVPADPSGLGRIIRDGSGSVTAIVEEKDADTA
                     QKAVKETNTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRA
                     SHLAAGVNNKRQLAELERIFQTGQAQELLKAGVTLHDPARFDLRGRLKHGQDVVIDVN
                     CIFEGEVEIGDNVEIGANCVIKNAKIGANSKIAPFSHLEDCEVGENNRIGPYARLRPQ
                     ARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVHKH
                     KTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVR
                     PEKDKQ"
     gene            8237..8569
                     /locus_tag="ACFOCA_000743"
     CDS             8237..8569
                     /locus_tag="ACFOCA_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HFC6987494.1"
                     /translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNKTESAAAEAAEEV
                     RDANGAVLQNGDTIILIKDLKVKGSSMTIKQGTKVKGIRLQEGDHNIACKIDGSAMNL
                     KSEFVKKA"
     gene            complement(8638..9903)
                     /gene="efeB"
                     /locus_tag="ACFOCA_000744"
     CDS             complement(8638..9903)
                     /gene="efeB"
                     /locus_tag="ACFOCA_000744"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HFC6987495.1"
                     /translation="MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTA
                     ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
                     GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
                     FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPG
                     AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
                     VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPR
                     DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
                     YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
     gene            complement(10167..11333)
                     /gene="efeO"
                     /locus_tag="ACFOCA_000745"
     CDS             complement(10167..11333)
                     /gene="efeO"
                     /locus_tag="ACFOCA_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HFC6987496.1"
                     /translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASSEAQTANEGGS
                     VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
                     MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
                     KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFK
                     DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
                     ASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTD
                     TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
     gene            complement(11330..12169)
                     /gene="efeU"
                     /locus_tag="ACFOCA_000746"
     CDS             complement(11330..12169)
                     /gene="efeU"
                     /locus_tag="ACFOCA_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter permease EfeU"
                     /protein_id="HFC6987497.1"
                     /translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
                     ASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMVLWMKKAARSMKQQLQ
                     DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
                     AAVIGALIYQGGMRLNLAKFFRWTGAFLIIVAAGLLAGSLRALHEAGIWNALQDIVFD
                     SSKYLHEDSPLGVLLGGFFGYTDHPTQGEALVWLLYLIPVITWFLCGSRPSETLTRKE
                     ELK"
     gene            12380..13705
                     /locus_tag="ACFOCA_000747"
     CDS             12380..13705
                     /locus_tag="ACFOCA_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HFC6987498.1"
                     /translation="MKKYLFRAALYGISAAILAACQSKSIQTFPQPDTSVINGPDRPA
                     GIPDPAGTTVAGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
                     QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
                     GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSQFPITARTTAIK
                     GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
                     IGYADKNEHPYVSIGKYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFF
                     RELTGSGNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
                     DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
BASE COUNT         3182 a         4144 c         3536 g         2964 t
ORIGIN      
        1 gaataaattt tgaaactcta atcccgtcat tcccacgaaa gtgggaatcc agaatctcta
       61 aagcttcagc taacctttga atattgctgt tgttctaagg tctggattcc cgcctgcgcg
      121 ggaatgacgg catcggtctg ctgttttcgg acggcatttc ggctcaatcc agcagtgcgt
      181 ccacaaacgc gcgcgcgtca aacgggcgca aatcgtctat gccttcgccc acgccgatat
      241 agcggacggg gacggggcgg tcggaggcaa gcgcggcgag gatgccgcct tttgccgtgc
      301 cgtcgagttt ggtcacgatt aaaccggtca gccctaatgc gtcgtcaaag gctttgactt
      361 ggttgacggc gttttgcccg atgttggcat caagcacgac gatgatttcg tgtggcgcgt
      421 cgggcatggc tttttgcagc acgcgtttca cttttttgat ttcttccatc aaatgaagct
      481 gcgtgggcag gcggccggcg gtgtcggcca gcacaatgtc gatgccgcgc gctttggcgg
      541 cttggacggc atcgaagcac acggcggcgg aatcgcccgt ggtttgcgaa atcacggtta
      601 cgttgttgcg ttcgccccaa gcttgaagct gctcacgcgc ggcggcgcgg aaagtatcgc
      661 cggcggcaag cagcacagat ttgccctgcg cttggaaata tttggcgagt ttgccgatgg
      721 atgtggtttt gcccgcgccg ttgatgccag caagcatgat gacaaacggc tctttggttt
      781 cgggcaaaac cagcggtttc tctagaggct taatcaggtc gtacaaggct tctttcagcg
      841 cgccgcgcaa ttcgttgccg tctttcagcc ctttgaggct gacgcggtcg cgcacgtctt
      901 tcatcaggta ttcggtggct tccatgccca tatcgctggt aatcagcacg gtttccagct
      961 cttcgtacaa atcttcgtcg atttgtccgc cgccgaacac gcccgccagc gatttcgcca
     1021 ttttgtcgcg cgatttggtc aaaccttgtt tcaaacgcgc cgcccaaccg agcttgtgtt
     1081 cttcagttgt cgcaacggct tcttgaactt gcccgacagc ctcgccgacg gtttcggcaa
     1141 cggcttcttt tgccgcttcg acttgttccg ctgctttttc cgccgcttcc tctgcttcag
     1201 acagcatctc ggcaacggtt tcctttacct gttcaaccgc accgctgacg gtttcaacag
     1261 ccgattcgac ctgccctttg acgctttccg ttaaagattc gacttcttct ttaatatttt
     1321 caactatttg agtaacttcg gattctgctt ttgctgcagt ttcctgaact tgagcctcct
     1381 cgggagccgg cgtttcctgt tttttcttgc gacggaagaa gctgaacatt gaattttcct
     1441 tttaatttta gaaacttgaa atagggtgta ttgtagcgta ttttgcgcgg caaggttgtc
     1501 tgaaaatccg ggctgtaagg tttcggcatc tcaaacgtct aatcatgcaa accgtccaca
     1561 caggaaacat taaaatgaaa caccgtactt tcttttccct ttgcgccaag ttcggctgcc
     1621 tgcttgcgct gggtgcttgt tcgcccaaaa tcgtcgatgc cggagccgcg accgtgccgc
     1681 acactttatc cactttgaaa accgcagaca accgccccgc cagtgtttac ttgaaaaaag
     1741 acaaaccgac gctgattaaa ttttgggcaa gctggtgtcc tttgtgtctg tccgaattgg
     1801 gacagaccga aaaatgggcg caagatgcaa aattcagctc cgccaacctg attaccgtcg
     1861 cgtctccggg ctttttgcac gagaaaaaag acggcgactt ccaaaaatgg tatgccggtt
     1921 tgaattatcc caagctgccc gtcgtaaccg acaacggcgg cacgatcgcc caaagcctga
     1981 atatcagcgt ttacccttcg tgggcgttaa tcggtaaaga cggcgacgtg cagcgcatcg
     2041 tcaaaggcag catcaacgaa gcgcaggcgt tggcgttaat ccgcgacccg aatgccgatt
     2101 tgggcagttt gaaacattcg ttctacaaac ccgacactca gaaaaaggat tcaaaaatca
     2161 tgaacacgcg caccatttac ctcgccggcg gctgcttctg gggcttggaa gcctatttcc
     2221 aacgcatcga cggcgtggtt gacgcggtat ccggctacgc caacggcaac acgaaaaatc
     2281 cgagctatga agacgtgtcc taccgccata cgggccacgc cgaaaccgtt aaagtgacct
     2341 acgatgccga caaactcagc ctagacgaca tcctgcaata tttcttccgc gtcgttgatc
     2401 cgaccagcct caacaaacag ggcaacgaca ccggtacgca ataccgcagc ggcgtgtact
     2461 acaccgaccc cgccgaaaaa gccgtcatcg ccgccgccct caaacgcgag cagcaaaaat
     2521 accaactgcc cctcgttgtt gaaaacgagc cgctgaaaaa cttctacgat gccgaggaat
     2581 accatcagga ctacctgatt aaaaacccca acggctactg ccacatcgat atccgcaaag
     2641 ccgacgaacc gctgccgggc aaaaccaaga ccgccccgca aggcaaaggc ttcgacgcgg
     2701 caacgtataa aaaaccgagt gacgccgaac tcaaacgcac cctgaccgaa gagcaatacc
     2761 aagttaccca aaacagcgcg accgaatatg ccttcagcca cgaatacgac catttgttca
     2821 aacccggcat ttatgtggac gttgtcagcg gcgaaccttt gttcagctcc gccgacaaat
     2881 atgattccgg ctgcggctgg ccgagcttca cgcgcccgat tgatgcaaaa tccgttaccg
     2941 aacacgatga tttcagctac aacatgcgcc gcaccgaagt gcgcagccac gccgccgatt
     3001 cgcatttggg acacgtcttc cccgacggcc cgcgcgacaa aggcggactg cgctactgca
     3061 tcaacggcgc gagcttgaaa ttcatcccgc tggaacaaat ggacgcggca ggctacggcg
     3121 cgttgaagag taaagtgaaa taagccgcac cgccgcctaa cccgacaaaa taccgtctga
     3181 aacctgcaac gtttcagacg gtatttttta tccggcgggg attctgtcca gacggagatt
     3241 ttgtttagac agcatcgccg ccgttttcaa tcagccccgc caaccgttcc aacgcgaagg
     3301 cgaccgcctg cgcgcggacg gattcgcggt tgccgtcaaa acggcgcatt gcttcgcaac
     3361 ttccgcccgg aaaggcaaac ccgaaccaaa ccgtgccgac gggtttgctt tcgctgccgc
     3421 cgcccggtcc ggcgatgccg gaaataccga cggcgtaatc cgcctgcgcc acggctttcg
     3481 cgccgcgcgc catctcatag acggtttggc ggctgaccgc gccgtgttcg agcagggttt
     3541 cgggcaacac gcccaagcgg tcttctttgg ctttgttgct gtatgttaca aaactctggt
     3601 cgaaccattg cgaactgcct gcaacgcttg tgaatgcggc ggcaagcatt ccgcccgtac
     3661 aggactcggc acagcttacg gtttgacgtt ttttcgtcag gtttcgggcg atggtgtgca
     3721 gcgcgtccat tttcccactc ccctttcaga cggcgtttaa gaattgatga tgtgtatgtc
     3781 gcgttgcggg aacgggatgt tgatattgac tttgcggagg ttttcgacca cttgttcgtt
     3841 caaatcgcat tgcagcgtcc agcggtctgc ttcgtttgcc caagcccata atgtgatttc
     3901 gatggcattg tcgcccaagg cggtgatgta ggcggcggcc tgccgctctt cgttttgaac
     3961 gctcaagggg tgttcgacgg cggctttcaa caccgcctct ttcgccactt tcaaatcgca
     4021 gttgtaatcg acgccgacta tcacttgggc gcggcaaagc ggcagggtgg aacggttgac
     4081 gatgctgttg cccatcacca cgctgttggg cagcacgact tcttcgttgt cggtcgtccg
     4141 caaagaagtc tgcaccattt taatctctcg gacatatcct tcaaaaccgc cgacgcggat
     4201 aaaatcgccg actttgaacg ggcggaacag gataatcagc gcaccggcgg caaaattgga
     4261 cagctggtct ttcaaggaca acgccaccgc caaacccgcg ccgccgatta aggcggttac
     4321 ggatgttgtg gaaacgccca atctgcccaa tgcggcaata atcaccaaaa tcaataagcc
     4381 gatattggca acattacaca aaaaactaat cagcgtggca tcgacctgcg cgcgcgtcat
     4441 cgccgccctc atcacagcga caatgcgttt cgccgcccat tttccgacca aaaaaataag
     4501 cagcgcggcg gcaaggttca gcccgaacgc ccacgccttt tcagccagat gctcccaacc
     4561 ggaaacactg atcaggtgta aaaaatcaaa ttgtttgaag tccattgttt tcctcttgat
     4621 cgaacatccg ccccgtgcgg cgtaatcggc acaggtgtaa aaatgccgta tgaagccctg
     4681 cggggcggta tgtttgtttt atttcaaaac cgttctaatc caacgggaaa cccatccgcg
     4741 ctggttcgca tcaatatcgc gctgcgcggg ggcggtggtg tgcgtcgggg cttgggcgaa
     4801 gcggaacacg tcgggcaggc gcgtgttttt gacggcgggg taaacccaca tttcggacgg
     4861 aaccgcctgc tgcacttccc gactttgcag ccattgcacc agttttgccg ccaattccgg
     4921 ctgtttcgcg cccttcaaga ccgccgcgcc ttcgacctgg cggaatacgc cgccttttaa
     4981 aaacaggttg cccgtcggcg gctcgctgta tttgcctttg gaaaaataca cttccgccgc
     5041 cgggctggcg gcataaccga ccaccagcgg atacgcgccg ccgttgtgcg aaaagtcggt
     5101 gtaatacgcc tcgctccagc ctttggcgac cttcacgccg ttctgccgca tctgtgccca
     5161 ccatttgaac gcgccttctt cgcccagacc gctgatgttc gccatcagga agcccagccc
     5221 cggggacgac gtggcgggag acggcacgac caataggttt ttatattcgg ggcgggtcaa
     5281 atcctgcagg gtttgcggca gaggaagctt tttgccttca aaccattttt tgtcgtaatt
     5341 gatggacaca tagccgtaat cgaccgccaa agccgaaggc agcccgaccg cgacgggggc
     5401 ggatccgggt tgcgccgccg ccaaaatgcc catttcccgc gccttgccga tattggcgtt
     5461 gtccaagccg tacaccgcgt cggcgatcgg gttggcgcgg ctcaaaatca gtttgttgag
     5521 catttcgttc gcgccgcccg cctgaataat cgacaccttc gcatcgtttg cccgctcgaa
     5581 gcgcgcaatc agccctttgg gcaggctgaa cgacttatgc accgccagcc tgacttccgt
     5641 ctgcgcctgc aggtatgccg aaaccgccag cagcggcagc agccaaattt tccgtttcat
     5701 tccgagtcct cctctattcg ctgtaaaata acattctaac aaattttcac ggttcaaaat
     5761 gcaagaaaac ccgaccgtgt ggctgttcga cctcgacaac acgctgcacg atgccgacgc
     5821 aggcatcttc acactcatca accgcgctat gacacgctat atggcacgcc gcctcaaact
     5881 ctccgaatcc gccgcgtccg acctgcgtca ggaatattgg caccgctacg gcgcaacgct
     5941 cgccggactg caaatccacc atcccgaaat cgacatcgcc gaatttttac gcgaaagcca
     6001 tccgatcgat gcaatcctga ccaagctgca cggcatggcg gatacggaac acaccctatg
     6061 ccgtctgaac gggcgcaagg cggttttttc caacggtccg tcgttttacg tccgtgccgt
     6121 tgtcggcgca ctcggtttgg aaaaccgttt cgacgcactg ttcggcacgg atgatttcgg
     6181 actgctgtac aaacccaatc cgcaagcgta tctcaatgtc tgccgccttt tggacgtacc
     6241 gcccgaatgc tgcattatgg tggacgacag cgcggacaac ctgcatcagg caaaagcatt
     6301 gggcatgaaa accgtctggt tcggtgcaaa atcccacgcg ctgtccttta tcgacgcctg
     6361 cgcacgcgat atggcgcaac tggctcggta tgcagaaact ttgtcagaac accgccaaac
     6421 tcattacaat accctctaaa tcctgaaaat acgaaagaaa agccatgcgt aaaaccttcc
     6481 ttatcctgat gaccaccgcc gcccttttgt cgggctgcgc gtgggaaact tatcaagacg
     6541 gcaacggcaa gaccgccgtc cgtcaaaaat atcccgccgg cacgcccgtt tattaccaag
     6601 acggcagcta ctcgaaaaat atgaactaca accaataccg tcccgaacgc catgccgtgt
     6661 tacccaacca aaccggcaac aacgccgacg aagagcatcg ccaacactgg caaaagccca
     6721 aatttcaaaa ccgataaacc caccctatgc cgtctgaagc cctttcagac ggcattgcac
     6781 aggaaaacgc tatgccgcaa aacactttaa acatcgtcat cctcgccgcc ggcaaaggca
     6841 cgcgcatgta ttccaaaatg cccaaggttt tgcacgaaat cggcggcgaa acaatgctcg
     6901 ggcgcgttat cgacaccgcc gccgcgctga atccgcaaaa catctgcgtc gtcgtcggcc
     6961 acggcaaaga gcaagtttta gacaccgtca aacgcgatgt cgtctgggtt gaacaaaccg
     7021 aacagctcgg caccggccac gccgtcaaaa ccgccctgcc ccaccttgcc gccgaaggcc
     7081 gcacgctggt gttgtacggc gacgttcctt taattgacgt tgaaaccctc gaaaccctgc
     7141 tcgaagccgc aggcaacgaa gtcgggctgt tgaccgacgt gcccgccgac ccgtcaggtt
     7201 tggggcgcat catccgcgac ggcagcggca gcgtaaccgc cattgtcgaa gaaaaagacg
     7261 ccgataccgc ccaaaaagcc gtgaaagaaa ccaacaccgg catcctcgtc ctgcccaacg
     7321 ccaaactgga aaactggctg aacagccttt ccagcaacaa tgcccaaggc gaatactacc
     7381 tgaccgacct catcgccaaa gccgttgccg acggtattaa agttcatccc gtccaagtcc
     7441 gcgcctccca cctcgccgcc ggcgtgaaca acaaacgcca gctcgccgaa ctcgaacgca
     7501 tcttccaaac cggacaggcg caagaattgc tcaaagcagg cgttaccctg cacgacccgg
     7561 cacgtttcga tttacgaggc cgtctgaaac acggacagga tgtcgtaatt gatgtgaact
     7621 gtatctttga aggcgaagtc gaaatcggcg acaacgtcga aatcggcgca aactgcgtca
     7681 tcaaaaacgc caaaatcggt gcaaacagca aaatcgcccc cttctcccac ctcgaagact
     7741 gcgaagtcgg cgaaaacaac cgaatcggcc cgtacgcccg cctgcgtccg caagcccgcc
     7801 ttgcagacga cgtacacgtc ggcaacttcg tcgaaatcaa aaacgccgcc atcggcaaag
     7861 gcaccaaagc caaccacctt acctacatcg gcgatgccga agtcggcagc aaaaccaact
     7921 tcggcgccgg tacgattatt gccaactacg acggcgtgca caaacacaaa accgtcatcg
     7981 gcgacgaagt gcgcatcggt tcaaactgcg tcctagtcgc ccccgttacc ctcggcaaca
     8041 aagtaaccac aggcgcgggc agcacgatta cccgcaatgt cgaagacaac aaactcgccc
     8101 tcgcccgcgc ccgccaaacc gtcatcgaag gctgggtgcg tcctgaaaaa gacaaacaat
     8161 aaagctatgc cgtctgaagc cggtttcagg tttcagacgg caccccaaaa caaacatccg
     8221 ataaggacgg caaaccatgt cattaccccc ttgcccgcaa tgcgcctccg aatacaccta
     8281 cgaagacggc ggacaataca tctgccccga atgcgcccac gaatggaata aaaccgaatc
     8341 cgccgcagcc gaagccgccg aagaagtgcg cgatgccaac ggcgcggtgc tgcaaaacgg
     8401 cgacaccatc atcctcatca aagacctcaa ggtaaaaggc agctcgatga cgatcaaaca
     8461 aggtacgaaa gtcaaaggca tacgcctgca ggaaggcgat cacaacatcg cctgcaaaat
     8521 cgacggcagc gcgatgaatt taaaatctga attcgtcaaa aaagcctgac cgcccaaaca
     8581 gtaaaatgcc gtctgaaccc cttatcggat tcagacggcg ttttttatat ggcggattta
     8641 tacgcccagc agcccttgcc ccaaaaagcc gcctttttcc acgccgggca agacgaagaa
     8701 atagccgccg ccgaaggggc tgatgtattc ttccagcggt tcgccgttga ggaggttttg
     8761 cacgaagatg aatccgtcgg caaggtttgc ctgatagcag acgaacacca gcccgacatc
     8821 aagctgtccg cttgaggcga gtccgcgcga atagctgtag gcgcggcgga agaggcggtg
     8881 ttttttgagg aattcgggat cgcgcggatt cgccaggcgt atatggctgt ctttgggcgt
     8941 gatatcaccc tcggggtctt tggcaaaatc cggttggtcg gcttcttttt tgccgtccat
     9001 cggcgcaccg ctgtatttgc gccgcccgaa aatgtcggtt tgctcttgaa gcggcgtcct
     9061 gtcccaaaac tcgacaaagt ggcggataag gcggactgcc tgatagctgc cgtttttcgc
     9121 ccactccggt tcgtcgaggc tgttggcggc cacccccgtc cacaaaacct cgtcggcagt
     9181 tttggggtcg gaaactttgg ggttgcccgt gccgtccctg aagcccaaca ggttgcgcgc
     9241 cgccatcgcg ccgggttcgg atttgggctg ccacccgtcg atactccaac ggataacggc
     9301 ggtttggacg gtgtgtttga tgatgtcgcg cagggcggct tggcaggttt cgggggtgaa
     9361 ggcacagatt tgcaggctca aatcgccgtc gcaccagctt ttttgcagct tatcgttgga
     9421 gaagtcgcgc atttcctgca aatgaatcgg ttttttgtct ttgagtccga accgaccgtc
     9481 aaacaggctg ctgcccaccc ctacggtaac ggtcaacccg tcggggttga aggctttgcc
     9541 caaaatgccg ctgccggctg gcggaagttt gtcgtcgccg tcttggtatt cgccgccttg
     9601 ggtgagaaac tcgatgcggg cggtcagcgt gcggaacagg ttttccagct gcttggcact
     9661 ttgcgcggtt acgtcgaagg cgcacataat cgaaaacgcc tgctgcggcg taacgatgcc
     9721 tgcctgatgt tcgccgtagc agggataggc ttggggcgag tgttggcttt cggcggtgcg
     9781 ttcggcggtt tcgccctgtt ttttgccgcc gagataacct ccgattgcgc cgactgctcc
     9841 ggctgcgatc gcggttttaa aaagagtgcg cctggtcggt tgtgcgggtt ggtttttgct
     9901 catggtgttt ccttcaatat ccgtgcagca ggatgggtat ccctgcacgc cgtttttcca
     9961 ttaaccgata gcggcaggtt gaaatcccgc cctgcaatat atggcggata tagtggatta
    10021 acaaaaatca ggacaaggcg acgaagccgc agacagtata aatagcacgg caaggcaagg
    10081 cgaggcaacg ccgtactggt ttttgttaat ccactataaa acttcagacg gtatctgccg
    10141 ccaaataccg tctgaacgct tgcggcttat ttcaagccga gtataccgcg aagttgggca
    10201 aggtcttcgg caagcgcgtt aatagaggcc tgtaacgctt tgcggtcggc ttcgcccagc
    10261 ttgtcgtagg tttcaaaacc gtctttagtc cggtatttcg ccagaatttc gttgacctgt
    10321 ttgaagttgg tatcggtttt ttccaacaag gctttgtttt tggcctcgat cagcggacgg
    10381 aacaaatcga cgattttttt cgatccgtcc acattggctt ggaaatcgct caaatcggtg
    10441 tggctgtacc ggtcttcttc gccgctgatt ttactgcccg ccacttcttc aatcagttcg
    10501 gatgcgccgc cgaccacctt gcccggagga aacgccaatg cgtcgatttc tttttgcagg
    10561 gcttcgacat cggtcatcag tttcgctgca atttccttca cgccggacac gtctttttcc
    10621 acccaaaggg cgtattcgat acggtgaaag ccggtaaatc cggcatcttt cgcgccgtct
    10681 ttgaagtcgt cttcacgcgc atcgatgacg gggtcgagtt cgctgaaaag ctcggcaatc
    10741 ggttcgatgc gttcgtaatg gacgcgggtg tcggcaaaca gggatttcgc cttttcaatg
    10801 tcgcctgctt tgacggcttc ggtaaaggtt ttggttttcg ccaccagctc tttaacctcg
    10861 ccttgaacat aggctttata gtcggcgagc ggttgggaca gtttttccaa atccgcttcg
    10921 ttggcggtgt ctttaaagcc gctgtcggtt accaccagct tgccgcgcgg attggtcaaa
    10981 agaccgcaag tcatttcgta ttcgcccggc aacagggtga cggtcatttt atcggaaagt
    11041 ccgggggcga tgttttcgcg ctcgtccacc accatcacgc ccttcaggat ttcccattcg
    11101 agcttgcggc cgctgttgtt tttaatattg aacacaacct gtccgctcgg cacggtcagt
    11161 tccatcggtt cgcaggcatt gtcgttgacg gcgatactga ccgaaccgcc ctcgttggcg
    11221 gtttgcgcct cactggacgc ggccggcgca gctttctccg cctccggcgg ctggcacgcg
    11281 gtcaaaccta aggcaagcat cacggacaat gcggtcaaat tgaattttct catttcagct
    11341 cctctttacg ggttaaagtt tcagacggcc tgctgccgca caaaaaccaa gttatgacgg
    11401 gaataaggta cagcagccaa accaaggcct cgccctgcgt cggatggtcg gtatagccga
    11461 aaaatccgcc gagcagcacg cccaacgggc tgtcttcgtg caaatatttt gatgagtcga
    11521 acacaatgtc ctgaagcgcg ttccaaatgc ctgcttcgtg cagcgcacgc agcgaaccgg
    11581 caagcagacc agcggcaacg ataatcagaa acgcccctgt ccaacggaaa aacttcgcca
    11641 gattcaggcg catcccaccc tgataaatca acgcgccaat cacggcggca gccaaaaccc
    11701 ccgctaccgc accggccggc atctgccaag tcgggctctg tttgaatacg gcaagcagaa
    11761 aaaaaacgct ctccaaacct tcgcgcgcca cggcaagaaa cgccataccg accaaggccc
    11821 atccttgtcc gctgccccgg ttcaaagccg cctgcacaga atcctgaagc tgctgcttca
    11881 tcgaacgcgc cgcctttttc atccataaaa ccatataagt cagcatcgcg acggcaacca
    11941 ggccgataat gccgacgacg aactcctgct gcttttgggg aatctcgccc gttgccgaat
    12001 ggatgccgta ccccagcccc aaacacatca aagaagcaag gacgaccccg aaccagacct
    12061 taggcatcag tttggaatgt ccggactgtt tcagaaaacc ggcaacgatg ccgacaatga
    12121 gcgcggcttc gataccctcg cgcaacataa ttaaaaaagc gaccagcata aacgcgaacg
    12181 aacaaggatg atgaataata tattatcgga atattttcat tgcttgtaaa tacaaatgca
    12241 agttattttt atctgcagta ccgcgcggcg gaaagttccg caggctgcag ctgcgccctg
    12301 tgttaaaatc ccctctccac ggctgccgca acgccgcccg aaaccatctt tcttattact
    12361 gccggcaaca ttgtccatta tgaaaaaata cctgttccgc gccgccctgt acggcatctc
    12421 cgccgccatc ctcgccgcct gccaaagcaa gagcatccaa acctttccgc aacccgacac
    12481 atccgtcatc aacggcccgg accggccggc cggcatcccc gaccccgccg gaacgacggt
    12541 tgctggcggc ggggccgttt ataccgttgt gccgcacctg tccctgcccc actgggcggc
    12601 gcaggatttc gccaaaagcc tgcaatcctt ccgcctcggc tgcgccaatt tgaaaaaccg
    12661 ccaaggctgg caggatgtgt gtgcccaagc ctttcaaacc cccgtccatt cctttcaggc
    12721 aaaacagttt tttgaacgct atttcacgcc gtggcaggtt gcaggcaacg gaagccttgc
    12781 cggtacggtt accggctatt acgaaccggt gctgaagggc gacgacaggc ggacggcaca
    12841 agcccgcttc ccgatttacg gtattcccga cgattttatc tccgtccccc tgcctgccgg
    12901 tttgcggagc ggaaaagccc ttgtccgcat caggcagaca ggaaaaaaca gcggcacaat
    12961 cgacaatacc ggcggcacac ataccgccga cctctcccaa ttccccatca ctgcgcgcac
    13021 aacggcaatc aaaggcaggt ttgaaggaag ccgcttcctc ccctaccaca cgcgcaacca
    13081 aatcaacggc ggcgcgcttg acggcaaagc accgatactc ggttacgccg aagaccctgt
    13141 cgaacttttt tttatgcaca tccaaggctc gggccgtctg aaaaccccgt ccggcaaata
    13201 catccgcatc ggctatgccg acaaaaacga gcatccgtat gtttccatcg gaaaatacat
    13261 ggcggataag ggctacctca aactcggaca aacctccatg cagggcatta agtcttatat
    13321 gcggcaaaat ccgcaacgcc tcgccgaagt tttgggtcaa aaccccagct atatcttttt
    13381 ccgcgagctt accggaagcg gcaatgacgg ccctgtcggc gcactgggca cgccgctgat
    13441 gggggaatat gccggcgcag tcgaccggca ctacattacc ttgggtgcgc ccttatttgt
    13501 cgccaccgcc catccggtta cccgcaaagc cctcaaccgc ctgattatgg cgcaggatac
    13561 cggcagcgcg attaaaggcg cggtgcgcgt ggattatttt tggggttacg gcgacgaagc
    13621 cggcgaactt gccggcaaac agaaaaccac gggatatgtc tggcagcttc tgcccaacgg
    13681 tatgaagccc gaataccgcc cgtaaaccgg aaaacaatgc cgtctgaagc ccatccctag
    13741 gcaatcgggc gcattaaggc gaagttttgc gataccgcag gcacaaaatt cctttcttat
    13801 ttgacggaat tatagtggat caaatt
//
LOCUS       DAXIFS010000034        13660 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.034, whole genome shotgun sequence.
ACCESSION   DAXIFS010000034 DAXIFS010000000
VERSION     DAXIFS010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13660
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.034"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(318..653)
                     /locus_tag="ACFOCA_000748"
     CDS             complement(318..653)
                     /locus_tag="ACFOCA_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFC6987499.1"
                     /translation="MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKI
                     TMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARGKAEETANKTMGAFTQGL
                     PPGVGDFFR"
     gene            complement(733..2862)
                     /gene="dnaX"
                     /locus_tag="ACFOCA_000749"
     CDS             complement(733..2862)
                     /gene="dnaX"
                     /locus_tag="ACFOCA_000749"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFC6987500.1"
                     /translation="MAYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLT
                     GTRGVGKTTIARILAKSLNCENAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGID
                     NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH
                     KVPVTVLSRCLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL
                     SLLDQAIAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAV
                     GFDNALGELAILLQHLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHG
                     KRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDTNAVIENTELKSPSAQTAEKETAVK
                     KPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQAAAGTA
                     QTSAKSIQTASEAETPPENQVSKNKAADNVTDAPLSEVPSENPIQATPNDEAVETETF
                     AHEAPAEPFYGYGFPDNDCPVEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNN
                     TPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARAT
                     ADKKRLDKIRDTLAQAYGLQLTLQTQDWRDEAGRETPAMQDKRVQAEDRQKAQALLEA
                     DPAAQKILQAFGAQWQPESLELAANRP"
     misc_feature    complement(1634..1673)
                     /gene="dnaX"
                     /locus_tag="ACFOCA_000749"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01843"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="This ribosomal frameshift element is known only in
                     the genus Neisseria; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01843"
     gene            complement(2957..4933)
                     /gene="mutL"
                     /locus_tag="ACFOCA_000750"
     CDS             complement(2957..4933)
                     /gene="mutL"
                     /locus_tag="ACFOCA_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HFC6987501.1"
                     /translation="MSRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAID
                     VELAGGGIRLIRVSDNGGGIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLAS
                     IASVSRLTLTSRQEDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKF
                     LKSEATEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQSLHERIAAIVGDDFQT
                     ASLEIDSDNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLH
                     NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTE
                     SVSNAGEVLHDITGVTPAPMPSENNSENLFDRASNYPTGNKSDTHNAFGSSGKTAPMP
                     YQSAYAPQQRSLSLRESRAAMNTYAELYKKTDDIDLELSRFEQARFGNMPSETPAPQT
                     DTPLSDGIPSPSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQR
                     QENGNLQSQRLLIPVTFAASHEECAALADHAEALAGFGLELSDMGGNTLAVRAAPAML
                     GKSDVVSLARDVLNEFAQVGSSQTIEEHENHILATMSCHGSIRAGRRLTLPEMNALLR
                     DMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ"
     gene            5077..5262
                     /locus_tag="ACFOCA_000751"
     CDS             5077..5262
                     /locus_tag="ACFOCA_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HFC6987502.1"
                     /translation="MYHYQSEATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQE
                     NFEAAKVAKKPYTYYQD"
     gene            5273..5941
                     /locus_tag="ACFOCA_000752"
     CDS             5273..5941
                     /locus_tag="ACFOCA_000752"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6987503.1"
                     /translation="MTTHLSNVAPDLQNYLNAIGEPEHPVLMRLREKTGHHRMGKMAI
                     AREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTALALALPEHGRITACDINVSFTDTAR
                     QVWNEAGVAHKISLHLQPALLTLDDLIVQGEAGSYDLALIDADKPPTPQYFERCLKLV
                     RQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTL
                     LLKK"
     gene            5941..6657
                     /locus_tag="ACFOCA_000753"
     CDS             5941..6657
                     /locus_tag="ACFOCA_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HFC6987504.1"
                     /translation="MKTKLPLFIIWLSVSAACSSPVSRNIQDMRLEPQAEAGSSDAIP
                     YPVPTLQDRLDYLEGTLVRLSNEVETLNGKVKALEHAKTHPSSRAYVQKLDDRKLKEH
                     YLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAASLLKGADGGDGGSIAQRSMYL
                     LLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAMFKIGECQYRLQQKDIARATWRSL
                     IQAYPSSPAAKRAAAAVRKR"
     gene            6706..7191
                     /gene="purE"
                     /locus_tag="ACFOCA_000754"
     CDS             6706..7191
                     /gene="purE"
                     /locus_tag="ACFOCA_000754"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFC6987505.1"
                     /translation="MTQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEARVVSAHRTPDL
                     MFQYAETARARGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIV
                     QMPKGVPVATFAIGEAGAANAALFAVSMLANENPELAQKLADFRAKQEQAVLSMELEQ
                     I"
     gene            complement(7207..7365)
                     /locus_tag="ACFOCA_000755"
                     /pseudo
     CDS             complement(7207..7365)
                     /locus_tag="ACFOCA_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(7374..8828)
                     /locus_tag="ACFOCA_000756"
     CDS             complement(7374..8828)
                     /locus_tag="ACFOCA_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFC6987506.1"
                     /translation="MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRK
                     AVLTDEEELQSLRDLCEHVRQRSLSKLPALLEQLEENLTKLGVKVHWAETPTEACQII
                     HDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVM
                     PAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAET
                     GTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYF
                     NMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRI
                     GGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLR
                     VEAQRSPTETVPHPILGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTP
                     RKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA"
     gene            complement(8825..9526)
                     /locus_tag="ACFOCA_000757"
     CDS             complement(8825..9526)
                     /locus_tag="ACFOCA_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFC6987507.1"
                     /translation="MSARENILAKLKKADALPMEEPAVFDYYREMGVSWGSEVERLKH
                     WAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQIARAALADSNIE
                     PIAFEREIDTWKTEFFTNIDAGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCL
                     FDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILA
                     ILPDHISPADLEENA"
     gene            complement(9523..10302)
                     /locus_tag="ACFOCA_000758"
     CDS             complement(9523..10302)
                     /locus_tag="ACFOCA_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFC6987508.1"
                     /translation="MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAITLIEQ
                     QGIRVHFPMAQSCCGQPAYSSGHPTEAFDVARAQLDLFPEEWPIVVPSGSCGGMMKHH
                     WPTLFKGSEYEERAVDCAGRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNV
                     HLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATE
                     IISADCGCMMNIGGKIAKDEPNMPRPKHIASFLLERTGGKA"
     gene            10586..11992
                     /locus_tag="ACFOCA_000759"
     CDS             10586..11992
                     /locus_tag="ACFOCA_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6987509.1"
                     /translation="MEKNTLSARAPSPWLPLLLAIAIFMQMLDATILNTALPEIAADL
                     NESPLNMQLAVISYTLTVALLIPLSGYLADRFGTKKVFFGSIAVFMLGSALCAASGSL
                     FELTLSRVVQGIGGSMLVPIPRLTILRVYDKSKLHNAINYAVMPALIGPVLGPLAGGY
                     LVEYASWHWIFLLNLPIGLLGFILGRNIMPDIKGSNISLDFKGYLIFSAAACLLLLSA
                     ESLSHALPPYFALLPLCGGLLFARRYFRHMKTASKPIYSADLFLIRTFRLGLAGNLFS
                     RLGISSIPFLMPLMFQVAFGFGASLSGWLVAPVALSSLLVKPLIAPLMKRFGYRTVLL
                     WNTKLLAAFIMLLALPDGNSPLWIWIFLSLAIGACNSLQFSAMNTLTLADLRPQQTGS
                     GNSLMAVNQQLAISMGIVVGALILKNWTFLIPASSGLHSAFRMTLLSIGGITLASSLV
                     FKRLHVSDGANLTRNTPS"
     gene            12104..13630
                     /locus_tag="ACFOCA_000760"
     CDS             12104..13630
                     /locus_tag="ACFOCA_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HFC6987510.1"
                     /translation="MKTRSLISLLCLLLCSCSSWLPPLEERTESRHFNTSKPVRLDNI
                     LQIRHTPHTNGLSDIYLLNDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNL
                     VYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVLRKWRALGYLTDF
                     PRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSHDF
                     DRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
                     RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGT
                     DALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPAT
                     KDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMER
                     TLADTTPKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
                     "
BASE COUNT         2778 a         3683 c         3838 g         3361 t
ORIGIN      
        1 gggtgtaagt ttctgctccg acggggttgg attcccgctt tcacgggaat gacgaagttt
       61 cagacggcat ttaagcggta cggatgtgta aataatggta gggtgggctt cagcctgctg
      121 attcccgcta ttcttgccgt ttttgcgttc ttatcattct cactgttttt accgttcacg
      181 ccgaatcctg caaactgatg ccgtcattcc cgcgaaggcg ggaatccaga cccgtcggca
      241 cggaaattta tcgagtaaaa cggtttctta gattctacgt tctagattcc cgcctgcgtg
      301 ggaatgacgg tcgggtatca gcggaagaag tcgcccactc cggggggtag accttgcgtg
      361 aatgcgccca ttgttttgtt tgcggtttct tcggctttgc cccgggcgga tttgagggcg
      421 gcgaggatga ggtcttcgag catttctttg tcgtcggcgg cttcttgaat caaatcgggg
      481 ctgatgtcga ttttgcgtac ttcgtgcgcg caggtcattg tgattttgac caggccgttg
      541 cctgcttcgc cttcgatttc ggtttcggca agtttggctt gcgctttttt catattttcc
      601 tgcatttgct gcgcctgttt catcaggccg cctaatccgg cttttccgaa catactgaat
      661 actcctgtct gttttgattg aatgagggaa acggcaatgc cgtccgaagg gttcgggcgg
      721 cattatatct gtttatggcc ggtttgctgc caattccagt gattcgggct gccattgcgc
      781 gccgaatgct tggaggattt tttgtgcggc ggggtcggct tcgagcaatg cttgtgcttt
      841 ttgcctgtct tcggcttgga cgcgcttgtc ctgcatcgcg ggggtttccc tgccggcttc
      901 gtcgcgccag tcttgggttt gcagggtgag ttgcagtccg taggcttggg caagggtgtc
      961 gcggattttg tcgagacgtt ttttgtcggc ggtggcgcgg gcttcggcgg tcatcgccaa
     1021 aaccatcagg ccggtgtcgg gatggtattc cgtccacgcg gagtgttgcg ccggcatttg
     1081 cgccgcgccg agtttgcggg cgaaatgccg gacgatggct gcccagtttt cggtggaaaa
     1141 ttcgggcggc ggggcggacg gcgtgttgtt tccgccgatg ccgcctgctt ctgcttcttc
     1201 gtccgcgcct ccgcctgcgg tatcggcagg ggcggcgtgt tcccaatcgg gcggcgggat
     1261 ttctgcgccg tcttctacgg ggcagtcatt atccggaaag ccgtaaccgt agaaaggttc
     1321 tgcaggggct tcgtgtgcaa atgtttccgt ttcaacggct tcatcattcg gtgttgcctg
     1381 aatggggttt tcagacggca cttcggacaa gggggcatcg gttacgttgt cggctgcctt
     1441 gttcttggaa acttggtttt cgggcggcgt ttcggcttcg gatgccgtct gaatgctttt
     1501 tgccgacgtt tgcgccgtgc cggctgcggc ttgggcttcg tctggcgcgt cttcccaagg
     1561 cggaacatcg ttgttttctt gattggaaac gggtccggca gttttgcctt cagacggcat
     1621 tgccgctgcg gatgccgtct gaacgggtgt ttgggcggtt tctgcttcag ggcgcggttg
     1681 gggctttttt acggcggttt ccttttcggc ggtttgtgcc gatggggatt ttagttcggt
     1741 attttcaatc acggcgtttg tatcacacga agctgccgcc aagggcgcaa acgccagcat
     1801 acgcagcagg gtcatcataa agccggcgta ttcgtcgggg gcgaggctca ggtcgcgttt
     1861 gccgtggacg gcgatttggt agtaaagctg gatttgttcg ccgcttatgg tttgggcgag
     1921 gcggtgcaaa atatcggaat cggggtcgtc gtgcgccaag gcggagggca ccgcctgtat
     1981 cagggcgagg tgttgcagca gtatggcaag ttcgcccaag gcgttgtcaa agccgacggc
     2041 acacgccgcc atttcctgcg ctttggcggt cagggctgcg ccgtcttggt tgatgatgcc
     2101 tgtcaagagt tcgtaaaggt attgtttgtc aaccgcaccg atcatttggc ggacgtcttg
     2161 ttcggcaacg ctgcccgaac ccatggcgat ggcttggtcg agcaggctca aggcatcgcg
     2221 catcgatccg gcggcggcgc gtcccaaaag ttgcagggca gggggttcgt aggcgatttt
     2281 ttcgctgtcg aggacgtggg cgaggtggtc ggcaacctgc tgcgaagtca tattgtgcaa
     2341 gacaaattgc aggcagcggc tcaagacggt aacggggact ttatgcggat cggtcgtggc
     2401 aaggatgaat ttgacgtgtt cgggcggctc ttccagcgtt ttgagcatag cgttgaacgc
     2461 gcttttggaa agcatatgca cttcgtcgat gatatagact ttgtatttgc cggcagtcgg
     2521 tgcatattgg gcgttttcca atacttcgcg gatgttgtcg atgcctgtgt tggaggcggc
     2581 gtcgatttcg agcaggtcga catagcgtcc ggcatcgatt tgggtgcagc tttcgcacac
     2641 gccgcaaggt tcgccgtgtt gcgcgttttc gcagttgagg cttttggcaa ggatgcgggc
     2701 gatggtggtt ttgcctacgc cgcgcgtacc ggtcagcagg taggcgtggt gcagcctgcc
     2761 ttcgtccaag gcgttttgca aggctttgac gacgtgttcc tgaccgacta agtcggaaaa
     2821 ggttttgggc cgccattttc gggcgagaac ttgataggcc atgtttttct cttggtttcg
     2881 gtcgtgatgt ttctgtcggt gcgtcggaat gccgtctgaa cggcggcttc gggcggcgta
     2941 ttctagcact ttcggtttat tgtccgcgca agaacagtgc gtccaattct ttcaaagtca
     3001 gtttgaccca agtcggcctg ccgtggttgc actggttgct gcgcggcgta ttttccatat
     3061 cgcgcagaag ggcgttcatt tcgggcaggg tgagccggcg gccggcgcgg atcgagccgt
     3121 ggcaggacat ggtggcgagg atgtggtttt cgtgttcctc gatggtttgg ctgctgccga
     3181 cttgggcgaa ttcgtttaat acgtcgcggg cgagggagac gacatcggat ttgcccaaca
     3241 ttgcgggtgc ggcgcggacg gcgagggtgt tgccgcccat atcggacagt tccagcccga
     3301 agcctgccag tgcttcggcg tggtcggcaa gggcggcgca ttcttcgtgg gacgcggcaa
     3361 aggttacggg aataagcagg cgttggcttt gcaggttgcc gttttcctga cgttggcgtt
     3421 tcattttttc gtagttgacg cgttcggcgg cggcgtgcat atcgatgagc aacaggctgt
     3481 cttcggcttg ggcaagaatg tagatgccaa gtaattgggc aatggcgaaa ccgagcggcg
     3541 gcagttcgga tggggacggg atgccgtctg aaagcggcgt atctgtttgg ggagcaggcg
     3601 tttcagacgg catattgccg aaacgtgcct gctcgaatcg gcttaactca aggtcgatgt
     3661 cgtcggtttt tttgtaaagt tcggcgtaag tattcattgc cgcgcggctt tcgcgcaggg
     3721 acaggctgcg ttgttgcggc gcatatgcgg actgataggg catgggcgcg gttttgcctg
     3781 atgaaccaaa ggcattgtgt gtatctgatt tgttgcctgt cgggtagttg gatgcgcgat
     3841 caaacagatt ttcgctgttg ttttcagacg gcattggtgc aggcgtaacg ccggtaatgt
     3901 catgcaacac ttcgcctgcg ttgctgacgc tttcggtcag gtcggcgcgt gtgtcggcaa
     3961 gggctttgtt gagcgtgtgg aacacaagtt ggtgcacctg ctgactgtcg cggaagcgga
     4021 tttcggtttt ggtcgggtgg acgttgacat ccacggcttc gggcggcagg tcgagaaaga
     4081 ggacgaaagc aggcgtcagt gcgttgtgca atacgtcgcg gtatgcctgc ttgacggcat
     4141 ggagcatgac tttgtcgcgg acaaaacgat ggttgacgaa gcagtattgt ttgtcggttt
     4201 tacctttggc gaaagtcggt ttggcaatcg cgccatagag ccgcaatgcg ccgttgtcgc
     4261 tgtcaatttc caatgatgcc gtctgaaaat catcgccgac aatggcggca atccgttcat
     4321 gcaggctttg tgcagggagt ttgaacactt gtttgccgtc gcgtttgagc gagaaggcaa
     4381 tgtgcggatg cgccagcgcg aggcgttcga gcatagtggc gcagtgggcg tattcggtgg
     4441 cttcagactt gaggaacttg cgccgcgcag gggtattgaa gaagagttcg gcggcttcga
     4501 tggtggtgcc gacggggtgg gcggcggcgg tggggctgct gagtttgccg tcttcggctt
     4561 tgacttgggt tgcgtgcgaa ctgtcttctt gacggctggt cagggtcagg cggctgacgg
     4621 aggcgatgct tgccaagcct tcgccgcgaa agcccatgct ggcaacgtgt tccaaatcgt
     4681 ttaaggtttt gattttgctg gtagcgtgtc ggtggagcgc aagctcgatg tcgtcggggt
     4741 ggataccgcc gccgttgtcg ctgacgcgaa tcaggcggat gccgccgccc gccagctcga
     4801 catcaatcgc cgttgcgcct gcatcgatac tgttttcaac aatttctttc aaggcgttgg
     4861 cagggcgttc gactacttcg ccggcagcga tttggttgac aagatggtcg ggcagggcgg
     4921 caattcggga catggcatgg gcttccgttt caaaaaacgc tttattctat aataaaaccc
     4981 cttatctttc tgcccgtatt cttgataaaa gccgtttatc ccgtttggaa aataccagta
     5041 taatcacgcc gtatcccgta aaattggagc gcaaagatgt accactacca atccgaagcc
     5101 acacaattcc tcaaccgcct gattgaagaa aaacctgagt tggaacagca gcgtttggaa
     5161 aaccgggggc ttttgtggga tgtcgaactc aatcccgaag aacaggaaaa cttcgaggcg
     5221 gcaaaagtag cgaaaaaacc ttatacctat taccaagact gaacccgccg aaatgacgac
     5281 ccatctgtcc aatgtcgccc ccgacctgca aaactatttg aacgccatcg gcgaacctga
     5341 acatcccgtt ttgatgcggc tgcgcgagaa gaccgggcat caccgtatgg gcaaaatggc
     5401 gattgcgcgc gaacaggcgg cggttttggt ttggctggca aagctgatcc gtgcggaaaa
     5461 atatctggaa gtcggcgtgt ttactggata cagcagcacc gcgcttgcat tggcgttgcc
     5521 cgaacacggg cggattaccg cctgcgacat caatgtaagc tttaccgata cggcgcgtca
     5581 ggtttggaac gaggcaggtg tggcacataa aatcagcctg cacctgcaac ccgcattgct
     5641 gacattggat gatttgattg tacagggtga agccggaagc tacgatttgg cactgataga
     5701 cgcagacaaa ccgcccacgc cgcaatattt cgagcgttgc ctcaaactcg tccggcaagg
     5761 cggcatcatt gccattgaca atattttgtt gaacggaagg gtgatgcgcg aagcggcttc
     5821 cgacgcgccg cccagtgtcg gcatcctcaa agatttcaat caaaacctgc cgaacgaccc
     5881 gcgcatcgtc cccatcaccc tgcccgtcgg cgacggtttg accctgcttc tgaaaaaata
     5941 atgaagacca aattaccgct ttttatcatt tggctgtccg tatccgccgc ctgttcttcc
     6001 cctgtttccc gcaatattca ggatatgcgg ctcgaaccgc aggcagaggc aggtagttcg
     6061 gacgctattc cctatcccgt tcccactctg caagaccgtt tggattatct ggaaggcaca
     6121 ctcgtccgcc tgtcgaacga agtggaaacc ttaaacggca aagtcaaagc actggagcat
     6181 gcgaaaacac acccttccag cagggcatac gtccaaaaac tcgacgaccg caagttgaaa
     6241 gagcattacc tcaataccga aggcggcagc gcatccgcac ataccgtcga aaccgcacaa
     6301 aacctctaca atcaggcact caaacactat aaaagcggca ggttttctgc cgctgcctcc
     6361 ctgttgaaag gcgcggacgg aggcgacggc ggcagcatcg cgcaacgcag tatgtacctg
     6421 ttgctgcaaa gcagggcgcg tatgggcaac tgcgaatccg tcatcgaaat cggagggcgt
     6481 tacgccaacc gtttcaaaga cagcccaacc gcgcccgaag ccatgttcaa aatcggcgaa
     6541 tgccaataca ggttgcagca gaaagacatt gcaagggcaa cttggcgcag cctgatacag
     6601 gcttacccga gcagcccggc ggcaaaacgc gccgccgcag ccgtacgcaa acgatagttt
     6661 ttccattttt ccgcttttta ccccatccgc accaaggaga gatttatgac acaaatcggc
     6721 atcatcatgg gcagcaacag cgattggccc gttatgcggc aggcagcgca gtttcttgaa
     6781 gagttcggcg tagaatatga ggcgcgcgtc gtttccgcac accgcactcc ggatttaatg
     6841 ttccaatacg ccgaaaccgc acgggcgcgc ggcatcaaag ccatcatcgc gggtgcgggc
     6901 ggcgcggcgc atttacccgg catggttgcc gccaagacca ccgtccccgt tttgggcgta
     6961 cccgtcccca gcaaatacct gcgcggcgaa gattcgcttt tatcgattgt acaaatgccc
     7021 aaaggcgtac ccgtcgccac attcgccatc ggcgaggcag gcgcggcaaa tgccgcattg
     7081 ttcgccgttt ccatgctggc caacgaaaac cccgaactgg cgcaaaaact ggcagacttc
     7141 cgagccaaac aggaacaggc tgttttgagt atggaattgg aacagattta aaacccgccg
     7201 tccgcgaata tatagtggct taaatttaaa ccagtacggc gttacctcgc cttgccgtac
     7261 tatttgtact gtctgcggct tcgtcgcctt gtcctgattt ttgttaatcc actatacaaa
     7321 tgccgtctga agccctgttt cgggtttcag acggcatttt tgcaaacaac tgtttatgcc
     7381 tgttcttttt ggcgcatttt ttctgccatt agttcgtgca gggttttctt cgccggtttc
     7441 atcggcacgc ggttttgcgt ccaacccaac tgtttgcgcg gggtcaggtt gcggaacttg
     7501 gtggctgccc aaccgaaggc gcggtaggtt ttgctgccgc tgaaaatacc gttgaatgtg
     7561 cgccacgcca tttgttcgcc gaaggtatgc gatgcgcctt gccctaggat ggggtgtggc
     7621 acggtttcgg tcggcgaacg ttgcgcttca acgcgcaaac gctgcatttg ttcggtaatc
     7681 gggatgcgta ccggacagac ttccacacac gcgccgcaca tggtacaggc ggttggcaag
     7741 tcgcgggtgg catccagacc caacaggtga ggggaaataa tctcgccaat cgggccggga
     7801 taggttgtgc cgtatgccgc gccgccgata cgggtataaa ccgggcaatg gttcatacac
     7861 gcgccgcaac ggatacattg caaggtgcgg cgcatttggt cttcggcata ggcttggctg
     7921 cgaccgttgt caagcaggac caagtgcatt tcttgaggac cgtccagctc ttcgctacgg
     7981 cgcgggccgg taatcatatt gaaataagtg gtaatgttct gaccaatggc agaacgcggc
     8041 agcaggctgt acaagggtgg gatgtcggac aatttcgcca ccactttttc aatgccggta
     8101 atagcgatat gcacgggcgg tacggtggta ctcaagcgac cgttgccttc gttttccacc
     8161 agacacagcg tacccgtttc ggcaacagca aagtttacgc cactcaaacc gacatcggca
     8221 gtgctgtaaa tatcgcgcag ggctttgcgg gcgaagccgg tcagttggtc cacgtcgtcc
     8281 gtaagcggag ttccaaggtt ttggtggaac agttcactca cctgttcttt ggttttgtga
     8341 atggcgggca tcacgatatg ggtcggtttt tcgcctgcca tttggacgat gaactcgccc
     8401 aagtcgcttt ctaccgcttt aatgcctttt gcttcaagat aatggttcag ctcgatttcc
     8461 tcgctgacca tcgatttgcc tttgaccatc agcttgccgt ttttggctgt gatgatgtcg
     8521 tggataattt ggcaggcttc ggtcggggtt tctgcccagt gcactttcac gcccaactta
     8581 gtcaggtttt cttccagctg ctccagcagg gctggcaatt tagacaatga gcgctgacgg
     8641 acgtgttcgc acaaatcgcg caggctttgc agctcttctt cgtcggtcaa aacggctttg
     8701 cgtttggtca tcagcatatc catcgcggta cgcaggcttt tgcgcaaagg cttgtcttga
     8761 agggaaattg cggcgttttg cttgaaagtt tccggcttca tgtgaaattt gatggtttgc
     8821 gtagtcatgc gttttcctcc aaatcggcag gggaaatgtg gtcgggcagg atggcgagga
     8881 tgaccaaatc gcgcgggccg tgcgcgccgt aagcaagcgt cagttggatg tctgcggttt
     8941 tggacgggcc ggaaatcagg aatacattgg tcggcatacc gttttccacc agtttttcgc
     9001 cttcgacggc attatgaaac tcgttgtaca tcttggacgt atcgaacagg cagaaatgca
     9061 cgggcggaac gagactcaaa gtacgcggtt cttcggggct ggaaaacagc atcagcgtgc
     9121 cggtgcgggc gatgccgcat tgcgcgccgc tgaagcccgc atcgatgttc gtgaaaaact
     9181 cggttttcca agtatcgatt tcgcgctcga aggcaatcgg ttcgatattg ctgtccgcca
     9241 atgcggcacg ggcaatttgt ccgtgttcgg tcgccaaggg cagcaggatg tttttcaaac
     9301 ccttgccttc tgccgcttcg cggaaaacct gcatccaatt gcttttcgtc acccaataaa
     9361 tttcggtttt gaccgcacgc atagcggcag cccaatgttt cagacgctca acttcgctgc
     9421 cccaagaaac acccatttca cggtaataat caaaaaccgc aggttcttcc atcggcaatg
     9481 cgtcggcttt tttcagtttt gccaaaatat tttcgcgcgc gctcatgctt tgcctccggt
     9541 acgttccaac aagaaggatg cgatatgttt cggacgcggc atattcggtt cgtccttagc
     9601 aattttgccg ccgatgttca tcatacagcc gcagtccgcg ctgatgattt cggttgcgcc
     9661 ggtttctttc agcgcggcga ctttgtcggt taccatcgcg ccggaaatat cggcttgttt
     9721 gacggagaat gtgccgccga agccgcaaca ttcgctttcg tggtcgtgga cgatgcgttc
     9781 gacgttttcc ataccgtcaa tcagttgcca gcccgagaga tggacattca tttcgcggcg
     9841 ggcggcgcag gaagtgtgaa cggcgacttt gagcggttcg cccttgtctt cgggtttgaa
     9901 accgatggca agcaggaaat gggtaaactc gatgatgcgg ccggcgcaat ccacagccct
     9961 ttcctcgtac tcgctgcctt taaacagcgt cggccaatgg tgcttcatca taccgccgca
    10021 cgaaccggac ggtacgacaa tcggccactc ctcggggaaa aggtcgagtt gcgctctggc
    10081 gacatcaaag gcttcggtcg gatggccgga tgaataggcg ggctgaccgc agcagctttg
    10141 cgccatcggg aaatggacgc gtatgccctg ttgctcgatt agggtaatgg catccatgcc
    10201 tgcttcgggc ataaaaagat caaggacgca agtgccgaaa aaatagacat cggtcggatt
    10261 gctgtcgtat cggatgattt ttgggggaat ggttgcgctc atgttttttg ataacgggaa
    10321 acccgttttt ttctgtagaa aggtaagcgt ttactttaag taattgactg ttgcgggtca
    10381 agtctaattt taaaaaataa tccggttttt cttacaaact accccataac gcttactgta
    10441 ccttaatctg atagttttcg ataataatta tcattacaat gcaatgccgg ttcgtttgct
    10501 tgtgaacatt caagatgccg actctgacgg cattcagaca gcatctgaaa acaataacgg
    10561 cacaaggatg gggtacaatc gctctatgga aaaaaacacc ctatccgccc gcgcaccatc
    10621 cccttggctg ccgcttctgc tggcaattgc catttttatg cagatgttgg atgcgaccat
    10681 tttaaatacc gcactgcctg aaattgccgc cgacctgaat gagtcgccat tgaacatgca
    10741 gctggcggtt atttcctaca cgctgacggt tgccctgctg attcctttga gcggttattt
    10801 ggcggacagg ttcggaacga aaaaagtctt tttcggttcg attgccgttt ttatgctcgg
    10861 atcggcattg tgcgccgcat cgggttcgct gtttgaattg acgctttccc gtgtcgttca
    10921 gggcatcggc ggttcgatgc tggttccgat accgcgtctg accatcttgc gtgtgtacga
    10981 caagtccaag ctgcacaacg ccatcaatta tgcggttatg cccgcattaa tcggaccggt
    11041 tttagggcct ttggcgggcg gttatctggt cgaatacgct tcgtggcact ggattttcct
    11101 gctcaacctg cccatcggtc ttctgggttt catattggga cgcaacatca tgcccgatat
    11161 taaaggcagc aatatctctt tagacttcaa aggctatctg attttttctg ccgccgcgtg
    11221 cctcttgtta ctttcggcag aaagcctgtc gcacgcgctg cctccgtatt ttgcactgtt
    11281 gccgctgtgc ggcggactgc tgtttgcacg ccgttatttc cgacatatga aaaccgcgtc
    11341 caaaccgatt tattccgccg acctgtttct gatacgcact ttccgtctag gactggcggg
    11401 caatctgttc agccgtctcg gcatcagctc gattcctttt ctgatgcccc tgatgtttca
    11461 agtcgctttc ggcttcggcg caagcctgtc gggttggctg gtcgcccccg tcgccctgtc
    11521 ttcgctgctg gtcaaaccgc tgattgcacc gctcatgaaa cgtttcggct accgcacggt
    11581 actgctttgg aacaccaagc tgcttgccgc cttcatcatg ctgctcgccc tacctgatgg
    11641 aaactcgccg ctgtggattt ggattttcct ctcgctggcg atcggcgcgt gcaactccct
    11701 acagttttct gccatgaaca cactgaccct cgccgatttg cgcccgcaac agaccggcag
    11761 cggcaacagc ctgatggcgg tcaaccaaca gcttgccatc agcatgggca ttgttgtcgg
    11821 cgcattaatc cttaaaaact ggacatttct gataccggct tcttcaggtc tgcattccgc
    11881 cttccgtatg accctgctca gtatcggcgg cattaccctt gcctcgtcgt tggttttcaa
    11941 gcgtctgcac gtttcagacg gtgcaaacct gacacggaac acaccgtcct aaagcggtcc
    12001 gcacgcaaaa cttttacccg tttcaacgtt tggattatga ttccgcactt ccatgcgcac
    12061 caaccccaaa acacaggcaa tgccgtctga aaccatatcc ctgatgaaaa cacgcagcct
    12121 aatttccctt ttatgcctcc ttctctgttc atgttcttca tggttgcccc cactggaaga
    12181 acggacggaa agccgtcatt tcaatacttc caaacccgtc cgcctggaca acatcctgca
    12241 aatccggcac acccctcata ccaacgggct atccgatatc tatctgttga acgaccccca
    12301 cgaagccttt gccgcccgcg ccgcccttat cgaatctgcc gaacacagcc tcgatttgca
    12361 atactacatc tggcgcaacg acatttccgg ccgactgctg ttcaacctcg tgtaccttgc
    12421 cgcagaacgc ggtgtgcgcg tacgcctgct gttggacgac aacaacacgc gcggattgga
    12481 cgacctcctg ctcgccctcg acagccatcc caatatcgaa gtgcgcctgt tcaacccctt
    12541 cgtcttacga aaatggcgcg cactcggcta cctgaccgac ttcccccgcc tcaaccgccg
    12601 catgcacaac aaatccttta ccgccgacaa ccgcgccacc atactcggcg gacgcaatat
    12661 cggcgacgaa tacttcaaag tcggtgagga caccgttttc gccgacctgg acatcctcgc
    12721 caccggcagc gtcgtcggcg aagtatcgca cgacttcgac cgctactggg caagccattc
    12781 cgcccacaac gccacgcgca tcatccgcag cggcaacatc ggcaagggtc ttcaagcact
    12841 cggatacaac gacgaaacgt ccagacacgc gctcctgcgc taccgcgaaa ccgtcgaaca
    12901 gtcgcccctc taccaaaaaa tacagacagg acgcatcgac tggcagagcg tccaaacccg
    12961 cctcatcagc gacgaccctg caaaaggact cgaccgcgac cgccgcaaac cgccgattgc
    13021 cgggcggctg caagacgcgc tcaaacagcc cgaaaaaagc gtctatctgg tttcacccta
    13081 tttcgtcccc acaaaatccg gcacagacgc actggcaaaa ctggtgcagg acggcataga
    13141 cgttaccgtc ctgaccaact cgctacaggc gaccgacgtt gccgccgtcc attccggcta
    13201 tgtcaaatac cgaaaaccgc tgctcaaagc cggcatcaaa ctctacgagc tgcaacccaa
    13261 ccatgccgtc cctgccacaa aagacaaagg cctgaccggc agctccgtaa ccagcctgca
    13321 tgccaaaacc ttcattgtgg acggcaaacg catcttcatc ggctcattca acctcgaccc
    13381 ccgttccgca cggctcaata ctgaaatggg cgttgttatc gaaagcccca aaatcgcaga
    13441 acagatggag cgcacccttg ccgataccac acccaaatac gcctaccgcg ttaccctcga
    13501 caggcacaac cgcctgcaat ggcacgatcc cgccacccga aaaacctacc cgaacgaacc
    13561 cgaagccaaa ctttggaaac gcatcgccgc aaaaatccta tccctgctgc ccatagaagg
    13621 tttattatag aaatgtagcg gattaacaaa aaccagtacg
//
LOCUS       DAXIFS010000035        13587 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.035, whole genome shotgun sequence.
ACCESSION   DAXIFS010000035 DAXIFS010000000
VERSION     DAXIFS010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13587
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.035"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(63..623)
                     /gene="sodC"
                     /locus_tag="ACFOCA_000761"
     CDS             complement(63..623)
                     /gene="sodC"
                     /locus_tag="ACFOCA_000761"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC"
                     /protein_id="HFC6987511.1"
                     /translation="MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPV
                     NGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAG
                     GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
                     TGGDNHSDHPAPLGGGGPRMACGVIK"
     gene            complement(1040..2080)
                     /gene="mutY"
                     /locus_tag="ACFOCA_000762"
     CDS             complement(1040..2080)
                     /gene="mutY"
                     /locus_tag="ACFOCA_000762"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFC6987512.1"
                     /translation="MNTPIPFSERLIRWQKQHGRHHLPWQVKNPYCVWLSEIMLQQTQ
                     VATVLDYYPRFLEKFPTVQTLAAAPQDEVLSLWAGLGYYSRARNLHKAAQQVVRQFGG
                     TFPSERKDLETLCGVGRSTAAAICAFSFNRRETILDGNVKRVLCRVFARDGNPQDKKF
                     ENSLWTLAESLLPSENADMPAYTQGLMDLGATVCKRTKPLCHQCPMADICEAKKQNRT
                     AELPRKKTAAEVPTLPLYWLIIRNRNGAILLEKRPAKGIWGGLYCVPCFESLNGLSDF
                     AAKFSLTMADMDEQTALTHRLTHRLLMITPFEGQMPSESPSDGIWIKPTHLKDYGLPK
                     PLEIYLNGNRLE"
     gene            2243..3284
                     /locus_tag="ACFOCA_000763"
                     /pseudo
     CDS             2243..3284
                     /locus_tag="ACFOCA_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
     gene            complement(3542..4180)
                     /locus_tag="ACFOCA_000764"
     CDS             complement(3542..4180)
                     /locus_tag="ACFOCA_000764"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HFC6987513.1"
                     /translation="MSKLTPREILTAGAVVPVMAIDDLSTAIDLSHALVEGGIPTLEI
                     TLRTPVGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAISPGLHESLAKAG
                     HNSGIPLIPGVATPGEVQLALEHGIDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTG
                     GISLATAPEYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAALKPKA"
     gene            complement(4361..6196)
                     /gene="edd"
                     /locus_tag="ACFOCA_000765"
     CDS             complement(4361..6196)
                     /gene="edd"
                     /locus_tag="ACFOCA_000765"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HFC6987514.1"
                     /translation="MNTTPIHSKLAEITGRIIERSRPTREKYLAKIRSAKQMGRLERN
                     QLGCSNLAHGYASMPKSIKIEMLQDTVPNLGIITAYNDMVSAHQPFKDFPDQIKDEAQ
                     KNGATAQVAGGTPAMCDGITQGYAGMELSLFSRDVIAMSTAVGLSHQMFDGSLFMGVC
                     DKIVPGLMIGALSFGHIPGIFVPAGPMSSGIGNKEKARTRQLFAEGKVGRNELLKSEM
                     GSYHSPGTCTFYGTANSNQMMMEMMGVHLPAAAFVHPYTDLREALTRYAAGHLARGIK
                     NGTIKPLGEMLTEKSFINALIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISSI
                     IPLLIRVYPNGKADVNHFTAAGGLPFVIRELLDAGLLHDDVDTVVGHGMRHYTKEPFL
                     IDGKLEWREAPETSGNDDILRKAGNPFSPDGGLRLMKGNIGRGVIKVSAVREGCRIIE
                     APAIVFNDQREVLSAFERGELERDFVCVVRYQGPRANGMPELHKLTPPLGILQDRGFK
                     VALLTDGRMSGASGKVPASIHMTPEALMGGNIAKIRTGDLIRFDSVSGELNVLIDEAE
                     WNAREVEHIDLGANQQGCGRELFAGFRSLTGGAETGAMSFGGEFA"
     gene            6712..8157
                     /gene="zwf"
                     /locus_tag="ACFOCA_000766"
     CDS             6712..8157
                     /gene="zwf"
                     /locus_tag="ACFOCA_000766"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HFC6987515.1"
                     /translation="MSTQTNFDLVLFGATGDLAMRKLLPCLYQAHVAGLLHPEGRILG
                     VSRSELDTEGFLAKVETSSKIHVKENFSDEAWASFVERLAYLKVDVTQPDDFAALGDL
                     VKARKETDNVVIYLSTAPKFFAQTCENLAKIGLNADNVRVVLEKPLGTDLASSQQINT
                     DVARYFKEGQIYRIDHYLGKESLQNLLALRFANVMFEPLWNNKYIESVQLTIAEQLGV
                     EERGEFYDITGALRDMVQNHLMQMLCMTAMEAPASLDADAVRDEKVKVIKSLKPLTVE
                     SVNENVVRGQYTAARGMNGYLEEINVPQDSFTETYVAIKAEIENERWKGVPFYLRTGK
                     RMAGKVAEIVLNFKDLNSHIFEGSRTAPNRLVIELQPYESVRLYTQMKTPGAGNKVET
                     VPLATDLGKALESRRAEAYERLLLDVINGKLALFNRRDELEAAWEYVMPILENWTNNT
                     TPPHGYGAHSWGPEAARELLARDGHKWHEEQ"
     gene            8437..9132
                     /gene="pgl"
                     /locus_tag="ACFOCA_000767"
     CDS             8437..9132
                     /gene="pgl"
                     /locus_tag="ACFOCA_000767"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HFC6987516.1"
                     /translation="MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRS
                     PIAFFNALSQKDLDWKNVGITLADERIVPTVHADSNTGLVREYLLKNKAEAAMWIPMV
                     EDGKTETELHPDAVVDYALKHYKQPDVLVLGMGNDGHTASIFPKAPQFQTAIDGSAGV
                     ALVHTTPVTAPHERVSMTLDAIAHTGHVFLAIRGEEKKAVFDQAAQGENREYPINLVL
                     NHQGVNCHVFYAE"
     gene            9113..10099
                     /locus_tag="ACFOCA_000768"
     CDS             9113..10099
                     /locus_tag="ACFOCA_000768"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - D-glucose binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HFC6987517.1"
                     /translation="MSSTPNKQAGYPRLVADIGGTNARFALETAPRVIEKAAVLPCKD
                     YDTVTDAVRAYLNQSGATAVRHAAFAIANPILGDWVQMTNHHWAFSIETTRQTLGLDT
                     LILLNDFTAQALAVTQTSSKDLMQVGGQKPVEFAPKAVIGPGTGLGVSGLVHSHAGWV
                     ALAGEGGHTSFPPFDDMEVLIWQYAKNKYGHVSAERFLSGAGLSLVYEALAAKQKAKP
                     AKLMPSEITEKALSGASPLCRQTLDIFCAMLGTVASNLALTLGARGGVYLCGGIIPRV
                     LEYFKTSPFRSRFENKGRFEAYLAAIPVYVVLSEFPGISGAAAALDNHLRNV"
     gene            10149..10997
                     /gene="hexR"
                     /locus_tag="ACFOCA_000769"
     CDS             10149..10997
                     /gene="hexR"
                     /locus_tag="ACFOCA_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HFC6987518.1"
                     /translation="MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASV
                     SQPTVIRFCRSLGYKGLPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAA
                     ASLLGERRFLKESELENAIATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYV
                     DTHTQLMAASVLSDQDVLVAISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLA
                     DCVLSVATQENAELYTPMVSRLLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH
                     IDYDKD"
     gene            11118..12764
                     /gene="pgi"
                     /locus_tag="ACFOCA_000770"
     CDS             11118..12764
                     /gene="pgi"
                     /locus_tag="ACFOCA_000770"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6987519.1"
                     /translation="MKHFHDLPAWPKLWNHFDDSKTLHMREMFEQDPQRAERYWLQVG
                     GLTLDYSKNRINDETMSLLFELAREAGVPERMRQMFHGEKINTTENRAVLHVALRNRT
                     NSPIVVDGEDVMPKVNRVLQRMGEFAHEVRSGSWLGYTNQVITDVVNIGIGGSDLGPL
                     MMCTALKPFGHPRLNMHFVSNVDGSQLRDVLSKVHPETTLFIIASKTFTTQETLTNAL
                     TAREWFLNHAGDESAVAKHFVAVSTNQKAVAEFGIDTANMFEFWDWVGGRYSLWSAIG
                     LPIMLYLGEENFIEMLNGAHLMDQHFINTPLERNLPAILALIGIWYINYYGGGSHVIA
                     PYDQHLHRLPKFIQQLDMESNGKQVTLDGKAVGHETSPIIWGETGINGQHAFFQLLHQ
                     GTHITPIDLIASLEKRSNLPGHHEILLANVFAQAEAFMRGKTPDEVRAELKAQGMDEA
                     RIEELVPHKTFSGNRPTNLILMDKVNPRNMGSLIAMYEHKTFVQGIIWGINSFDQWGV
                     ELGKQLAKTILGELTGETGPQKHDSSTERLIRLYLQTNRK"
     gene            12778..13329
                     /locus_tag="ACFOCA_000771"
     CDS             12778..13329
                     /locus_tag="ACFOCA_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6987520.1"
                     /translation="MPSERRPFQTAFLSNRKTVGKLAERVQSRYDGLHKFKHVCSAAM
                     ALIKEPLDKAKQRNEELEAAEEAAAQEALGREQEVDRVSEWEERYKLSRSEFEQFWKG
                     LPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKFSELACKTAETEARLEELH
                     NRKKALIDEMAREADKKELPKRL"
BASE COUNT         3301 a         3437 c         3687 g         3162 t
ORIGIN      
        1 ctaaatatct agcaaaaaag tgcggtcaaa attcaccgca cttttcgttt cgaacaatcg
       61 aattatttaa tcacgccaca tgccatacgt gggccgccac cgccaagtgg agctggatga
      121 tcggagtgat tatcaccacc cgtgtggatc ataatagagt gaccgcgaac atcatctaaa
      181 tgtttaagac gtggtgctaa aacaggattt gttgctgtgc catcatgcaa tacagttaat
      241 gcaggtaaat cacctaagtg tgcatcatct tgccatgggt aaccatgttg ttttgcacct
      301 ttaggatccc agtgaccgcc tgcgcctaaa ccagctgtca atttaccttc tttttctttt
      361 ggctcacagc ttgggttttc atggatgtgg aaaccatgta agccttcgct taatccttgt
      421 aaatcagggg taaacacaag accatagtta gattcagtaa tagtcactgt acccacatct
      481 ttgttaccgt ttactggatc aagttgttgc actttcactt caatagaagc acctttaggt
      541 atcgtattat gctcgtgtgc ttgcgcaaca ccaactgaac atactgcact aaccgctagt
      601 gctaataagg ttttcatatt cattgcaatc tcctttattg cagtaaaaac tcgcgactat
      661 tttagtcaat tttgttttaa aagccgataa atttttacga aaattttaca ttaattgtta
      721 tttgcagaaa attagaaccc gttatcacgt cttggataaa tgccaaaacc attgtgattc
      781 agagaattaa aaagaaaaat ttcggaatcc tcatcctttt ctgaaacctg attgcggtat
      841 ccatggcttt gtctttgtca tttaagtttg tgttcatgtt tttgaccttc tttgcttttt
      901 aaatcctttt taaattgccg acttcttccg ttccaaatgt cccatttgaa cattatcccg
      961 ccgcctaaaa tacgacccaa attcatcggt tgttcttgct gcgatacctg caaacaacag
     1021 ttcaatgggt ttattttgtt tattctaacc tattaccgtt taaataaatt tccaaaggct
     1081 tgggcaggcc gtaatctttc aaatgcgtcg gctttatcca aatgccgtct gaagggcttt
     1141 cagacggcat ttgtccttca aacggcgtaa tcatcagcaa ccggtgcgtc agccggtggg
     1201 tcagggcggt ttgttcgtcc atatctgcca tggtcaggga gaatttggcg gcaaagtcgg
     1261 aaagcccgtt caaactttca aaacacggca cgcaatacag cccgccccaa atgcctttgg
     1321 cggggcgttt ttccagcaaa atcgcgccgt tccggttgcg gataatcagc cagtaaagcg
     1381 gcagggtcgg tacttcggcg gcggtttttt tgcgcggcag ctcggcggtg cggttttgct
     1441 tttttgcttc gcagatgtcc gccatcgggc attggtggca caagggtttc gtccgtttgc
     1501 acacggttgc gcccaaatcc atcaaacctt gtgtataggc aggcatatcg gcgttttcag
     1561 acggcagcag gctttcggca agtgtccaga gcgagttttc aaattttttg tcctgcggat
     1621 tgccgtcgcg ggcgaacacg cggcagagta cgcgtttgac gttgccgtcc aaaatggttt
     1681 cgcggcggtt gaaggagaag gcgcaaatgg cggcggcggt gcttctgcct acgccgcaga
     1741 gcgtttccaa gtctttgcgt tccgatggaa acgtgccgcc gaattgcctg acgacttgtt
     1801 gcgcggcttt gtgcaggttg cgcgcgcggc tgtaatagcc caagcccgcc cacaacgaca
     1861 acacttcgtc ttgcggcgcg gcggcaagcg tctgaacggt cgggaatttt tctaagaaac
     1921 gcggatagta gtccaacacg gtggcgacct gcgtttgctg gagcatgatt tcggaaagcc
     1981 agacgcaata agggtttttg acctgccaag ggaggtggtg gcgaccgtgt tgtttttgcc
     2041 agcggatgag ccgttcggag aaggggatgg gtgtgttcat taatatcaat cggtggtttt
     2101 atttatattt aaaacagtat gttattgtat aacattgtga aaataattct tattgactta
     2161 ttttttgtag gggtatataa ctcatataaa gaaactttat tgcggtattg aaattattta
     2221 tcaacaagca aggagtatca gcatgaaagc aatggtttat cacggcgcaa acgacatccg
     2281 ttttgaagaa aaaccccgtc cgcagattat cgatccgacc gatgcggtgg tgaaaatcgt
     2341 caaaaccacg atttgcggta ccgatttggg tatttggaaa ggcaaaaaaa accgaagtcg
     2401 ccgacggtcg tattctcggt catgaaggca tcggtattgt agaagaagtc ggcgaggctg
     2461 taaaaaacat caaagtcggc gataaagtca ttatttcatg cgtcagcaaa tgctgtactt
     2521 gcgacaactg caaaatccaa ctttattcgc attgctgcaa cggcggctgg attttgggct
     2581 acatgattga cggcacgcag gcagaatacg tccgcacgcc ttatgccgac aacagcctcg
     2641 tgccgctgcc cgacaacgtc aacgaagaag tcgccctgtt gttgagcgac gctttgccga
     2701 ccgcacacga aatcggcgtg caatacggcg atgtcaaacc cggcgacacc gtattcatcg
     2761 caggtgccgc tcctgtcggt atgtccgcct tgttgaccgc ccaactgtat agccccgccg
     2821 ccattatcgt gtgcgatatg gacgaaaacc gtttgaaact ggcgaaagag ttgggcgcga
     2881 cccataccat cagccccgcc tcaggcgatg tctccaaaca agtttttgcc attgtcggcg
     2941 aagacggcgt agattgtgcc atcgaagccg tcggtattcc tgcgacttgg aatatgtgcc
     3001 aagacatcgt gaaaccgggc ggtcatatcg ccgttgtcgg cgtacacggc caatccgttg
     3061 atttcaaact ggaaaaactc tggattaaaa acctcgccat cactaccggt ttggtcaatg
     3121 ccaatactac cgaaatgctg atgaaggcaa tttccagcag ctcagtcgat tacaccaaaa
     3181 tgatgaccca ccatttcaaa ttcagcgaat tggaaaaagc ctacgacgtg ttcaaacacg
     3241 ccgccgaaaa ccaagcgatg aaagtggttt tggaagcgga ttaatcggcc ttgaatcagt
     3301 tgttttttta agcggatgcc gtctgaatgc gtttcagacg gcattttttc agccgcgtag
     3361 tatgggctgt ccggctgctg tcgaatgaac tgaacgttat ttttattatg cggaaggcgg
     3421 atgggcattt taggggcggt atgtctgatc agtgctgccg tgtatgccga ctgtgccctc
     3481 aatcggcaaa atgccgtctg aaacgggaaa ggtttttcag acggcatttt tacgatgcga
     3541 atcaggcttt gggtttcaac gccgccgctt ctttggcgag gcgggtgatg gtgtcccagt
     3601 ctttgttttt cacggcttct ttcggtgtca gccaagagcc gccgacgcac aggacgttgg
     3661 gcagtgccaa gtactcgggc gcggtggcga ggctgatgcc gcctgtcggg cagaagcgaa
     3721 catcggcgta aggaccgtac agggctttga gcatggcttt gccgccaacg acttcggcag
     3781 ggaagagttt gagggtgtcg atgccgtgtt ctaaagccag ttggacttcg cccggggtgg
     3841 caacaccggg aatcaggggg atgccgctgt tgtggccggc tttggcgagg gattcgtgca
     3901 gccccgggct gatggcgaaa accgcgcctg cgtcttcgac ggctttgagc tgttcgggat
     3961 tggttaccgt acccgcgccg acgatggcgt tgggcacttc tttggcaatc aggcggatgg
     4021 cgtcgaggcc gacaggggtg cgcagggtga tttcgagggt agggatgccg ccttcgacaa
     4081 gggcgtggga caaatcgatg gcggtgctta agtcgtcaat cgccattacc ggcacaactg
     4141 cgccggcggt caaaatttcg cggggggtca gtttggacat ttcggttctc cgggtggaat
     4201 ggggtatttt attaagatgg gacaggttgt aggtcggatt caagaaaccg acatcttgga
     4261 cggctgtgtc ggattcgaga atccgaccta cgtctatctt aaaacgcttg aataattttt
     4321 cagacggcct tcggtctgaa aaggccgtct gaaacgcaca tcaggcaaat tcgccgccga
     4381 agctcatcgc gccggtttcc gcgccgccgg tcaaactgcg gaagccggcg aagagttcgc
     4441 gaccgcagcc ttgttggttc gcgcccaagt cgatgtgttc gacttcgcgg gcgttccatt
     4501 cggcttcgtc aatcaggacg ttgagttcgc cgctaacgga gtcgaagcgg atcaggtcgc
     4561 cggtacggat tttggcgatg ttgccgccca tcagggcttc gggtgtcatg tggatggagg
     4621 ctggaacttt gccggacgcg ccggacatac gaccgtcggt cagcagtgcc actttgaagc
     4681 cgcggtcttg caggatgccc aaaggcgggg tcagtttgtg caattcgggc ataccgttgg
     4741 cacgcgggcc ttggtagcgg acgacgcaga cgaaatcgcg ttccaactcg ccgcgttcaa
     4801 atgcggacaa tacttcgcgt tggtcgttga acacgatggc aggtgcttcg atgatgcggc
     4861 agccttcgcg cacggcggac actttaatca cgccgcgacc gatgttgcct ttcatcaggc
     4921 gcagaccgcc gtcgggggag aacgggttgc cggctttgcg caggatgtcg tcgttgccgc
     4981 tggtttcggg ggcttcgcgc cattcgagtt tgccgtcgat aaggaaaggc tctttggtgt
     5041 agtggcgcat accgtgtccg acaacggtat cgacatcgtc gtgcaacagg cctgcgtcca
     5101 gcaattcgcg gataacgaaa ggtagaccgc cggcagcggt aaagtggttt acgtcggctt
     5161 tgccgttggg gtacacacgg atcagcaatg ggatgatgga agaaatttcg tcaaagtcgt
     5221 cccagttcaa aatcacgccg gcggcgcgtg ccatggcaac gaggtgcatg gtgtggttgg
     5281 ttgagccgcc ggttgccatc aggccgatta gggcgttaat gaaggatttc tcggtcaaca
     5341 tttcgcccaa tggtttaatc gtgccgtttt tgatgccgcg tgcgaggtgt ccggcggcat
     5401 agcgggtcag ggcttcacgc aggtcggtgt aagggtggac gaaggcggcg gcaggcaggt
     5461 gcacgcccat catttccatc atcatttggt tggagtttgc cgtgccgtag aaagtgcagg
     5521 tgcccgggct gtggtaagaa cccatttcgc ttttcaaaag ttcgttgcgt ccgaccttgc
     5581 cttcggcgaa aagctggcgg gtgcgggctt tttctttgtt gccgataccg ctggacatcg
     5641 ggcctgcggg gacgaagata cccggaatat ggccgaaaga caacgcaccg atcatcaaac
     5701 cgggaacgat tttgtcgcac acgcccataa acaggctgcc gtcaaacatt tgatgagaca
     5761 gaccgacagc agtactcatg gcaattacgt cgcgggagaa cagcgacaat tccatgccgg
     5821 catagccttg ggtaataccg tcacacatgg cgggcgtacc gccggcaact tgcgcggttg
     5881 cgccgttttt ctgcgcttcg tctttgattt ggtcagggaa gtctttaaac ggctggtgtg
     5941 cggaaaccat gtcgttgtag gcggtgatga tgcctaagtt gggaacggtg tcctgaagca
     6001 tttcgatttt gatgcttttg ggcatggagg cgtagccgtg cgccaaattg ctgcagccga
     6061 gttggttgcg ctctaagcgt cccatctgtt tggcactacg gattttcgcc agatattttt
     6121 cacgcgtcgg acggctgcgt tcaataatgc gcccggtgat ttcggcgagt ttggagtgga
     6181 taggagtagt gttcacggtc ggtctcctgt cggaacgggg ggtattgggg atttgtttgt
     6241 gcgtttctga tttttgtatc gggtattcag acggtgagta tagtggatta acaaaaacca
     6301 gtacggcgtt gcctcgcctt gccgtattat ctgtactgtc tgcggcttcg tcgccttgtc
     6361 ctgatttttg ttaatccact atattttaaa aggtataccg tctgaaagtg ggaagcgggt
     6421 gttattatag tacaaaattt gtaattttgt tacaaaaaaa tcagacatcg aaaagaaatt
     6481 tgatttaaat cgcagaatct tccgattgtt gtaacggaat aggggaaacc tgcccgattt
     6541 ttggactagg tcaaataaat tgtaaaaatg ggaatagaca aaaagtgtag cggtgtgtag
     6601 tattactact cattatgccg cctgcctttg tttccgatat tgcgatgcag cgtgatgggg
     6661 gaaacaggtt tcagacggca tcgaaaaatt ctttcctgac gagataatac gatgagtaca
     6721 caaacaaatt ttgatttggt gttgttcggt gcgaccggcg atttggcgat gcgcaagctg
     6781 ttgccctgtc tgtaccaggc gcatgttgcc ggtctgcttc atcccgaagg gcgtatttta
     6841 ggggtcagcc gcagcgagtt ggataccgaa ggttttctgg cgaaggtgga aaccagttcc
     6901 aaaatccatg tgaaagaaaa tttttccgat gaggcttggg catcgtttgt cgaacgtctc
     6961 gcatatctca aagtcgatgt tacgcagccg gacgattttg ccgctttggg cgatttggtc
     7021 aaagcgcgca aagaaaccga caatgtcgtc atctatcttt ccaccgcgcc gaaattcttc
     7081 gcgcaaacat gtgaaaacct tgccaaaatc ggtttgaacg ccgacaacgt gcgtgtggtt
     7141 ttggaaaaac cgttgggtac ggatttggct tcttcccagc aaatcaatac cgatgttgcg
     7201 cgttatttca aagaagggca aatttaccgc atcgaccact accttggcaa agaaagcctg
     7261 caaaacctgc ttgcgctgcg ttttgccaat gtaatgttcg agccgctgtg gaacaataaa
     7321 tacatcgaaa gcgtgcagtt gaccatcgcc gagcagttgg gcgtggaaga gcgcggcgag
     7381 ttttacgaca ttaccggcgc gttgcgcgat atggtgcaaa accatttgat gcagatgctg
     7441 tgcatgactg cgatggaagc ccccgccagc ttggatgccg acgcggtgcg cgatgaaaaa
     7501 gtcaaagtca tcaagtcatt gaagccgctg accgtcgagt ctgtcaatga aaacgtcgtg
     7561 cgcggacaat ataccgccgc cagaggcatg aacggctatc ttgaagaaat caacgttccg
     7621 caagacagct ttaccgaaac ctacgtcgcc attaaagccg aaatcgaaaa cgaacgctgg
     7681 aagggcgttc ccttctacct gcgtaccggc aaacgcatgg cgggcaaagt ggcggaaatc
     7741 gttttgaact tcaaagattt gaacagccat atttttgaag gcagccgcac cgcgcccaac
     7801 cggctcgtta tcgagttgca accatatgaa tccgtgcgcc tctatacgca gatgaaaacc
     7861 ccgggggcag gaaataaggt cgaaaccgtg ccgctggcaa ccgatttggg caaagcattg
     7921 gaaagccgcc gcgcggaagc ttacgagcgc ctgctgctgg atgtgattaa cggcaaactc
     7981 gctttgttta accgccgcga cgaactcgaa gccgcgtggg aatatgtgat gccgattttg
     8041 gaaaactgga caaataacac cacgccgccg cacggctacg gcgcacactc gtgggggcct
     8101 gaagccgcgc gcgaactatt ggcgcgcgac ggacacaagt ggcacgaaga gcagtaatac
     8161 aataatgcgt tcagacggca tggggtttga aatgccgtct gaacgtaagt aaagcagtat
     8221 agtggattaa caaaaatcag gacaaggcga cgaagccgca gacagtacaa atagtacggc
     8281 aaggcgaggc aacgctgtac tggtttaaat ttaatccact ataaaaagca gtcccgatat
     8341 ttggtatcaa aagcataaac aactgttcgg ccgacatatt gctcaacccg tttccataac
     8401 ggaatatgcc gtctgaaata aaaaaaggac acaaatatgt ttgtttggca cgaatacgaa
     8461 aatgcggcag aagcggcgca gtctttggct gacgcagtgg cggatgcttt gcagggcgca
     8521 ctggacgaga agggcggtgc ggtgttggca gtttccggcg gacgttcgcc gattgcattt
     8581 ttcaacgccc tgtcgcaaaa agatttggat tggaaaaacg tcggcatcac cttggcagat
     8641 gaacgcatcg tgccgaccgt ccacgccgac agcaataccg gtttggtgcg cgaatacctg
     8701 ttgaagaaca aagcggaagc ggcaatgtgg attcctatgg tggaagacgg aaaaactgaa
     8761 accgaattac atcccgatgc tgttgtcgat tatgcactga aacattacaa acagcccgat
     8821 gttttggttt tgggtatggg aaacgacggg catacggctt cgattttccc gaaagctccg
     8881 cagtttcaga cggcaatcga cggttcggca ggtgtcgcgc tggtgcatac cacgcccgtt
     8941 accgcgccgc acgagcgcgt cagtatgacc ttggatgcga ttgcccatac ggggcatgtg
     9001 tttttggcga tacggggcga agagaaaaaa gccgtgttcg accaagccgc acaaggcgaa
     9061 aaccgcgaat atccgatcaa cctcgttttg aaccatcaag gagtgaactg ccatgtcttc
     9121 tacgccgaat aaacaagccg gatatccccg actggtcgcc gatatcggcg ggacgaatgc
     9181 acgctttgcg ctggaaaccg cgccgcgcgt cattgaaaaa gccgccgtgc ttccgtgtaa
     9241 agactacgat acggttaccg atgcggtgcg tgcctatctg aatcaaagcg gtgcaacagc
     9301 cgtacggcac gcggcatttg ccatcgccaa cccgattttg ggcgactggg tgcagatgac
     9361 caaccaccat tgggcgtttt ccatcgaaac cacccgtcag actttggggc tggacaccct
     9421 catccttttg aacgacttta ccgcgcaggc attggcggta acgcagactt caagcaaaga
     9481 cctgatgcag gtaggcgggc aaaagcctgt cgaatttgcc cccaaagccg ttatcggccc
     9541 cggtaccggc ctgggcgtga gcggattggt gcacagccac gcaggctggg tggctttggc
     9601 gggcgagggc gggcatacca gtttcccgcc gtttgacgat atggaagtgc tgatttggca
     9661 gtacgccaaa aacaaatacg gccatgtttc cgccgaacgc tttttgagtg gcgcgggctt
     9721 gagcttggtt tacgaggctt tggctgcaaa acagaaagcc aaacccgcca aactgatgcc
     9781 gtctgaaatc acggaaaagg ctttgagcgg cgcgtcgcct ttgtgccgtc agactttgga
     9841 catcttctgc gccatgctcg gcacggttgc ttccaacctc gccctgacgc tgggcgcgcg
     9901 cggcggcgtg tacctgtgcg gcggcattat tccccgcgtg ttggaatatt tcaaaacttc
     9961 cccgttccgc agccgtttcg agaacaaggg caggtttgaa gcatatcttg ccgcgattcc
    10021 cgtgtatgtc gtcttgagcg agttccccgg aatttccggt gcggctgcgg ctctcgacaa
    10081 ccatttgaga aacgtttaac cacagcggct ccttgcagcg gggctgcatt atcgaagggc
    10141 atatcattat gttaagcaaa atcagcgaat cactggcaaa cctttccggt gcggaacgca
    10201 aagtcgccga atgtgcattg gcggaaccca aatggttcgt tcatgccgcc gttgccgaaa
    10261 ttgccgaacg tgcgtccgtc agccagccga ccgtcatccg attctgccgc agcttgggtt
    10321 ataaagggct gcccgagttc aagctcgcct tgtccgccag catcggtcat gagggtatgc
    10381 cctatgtcca cgaagaactc aatgccgacg acgatatggc aagcgtggtc gagaaagtgt
    10441 tgggcaatgc cgccgcctcg ctgttgggcg aacgccgctt cctgaaagag tcggagctgg
    10501 aaaacgccat tgccacgctg atgcacgccc gtcgcgtcga gttttacggt gtcggcaatt
    10561 ccggtatcgt tgcgcaggac gcgcaacaca agtttttccg tttcggaatg tccacggtcg
    10621 cctatgtcga tacgcacacg cagctgatgg cagcatccgt tttgagcgat caggatgttt
    10681 tggttgccat ttccaacacg ggttcgtcta tcgaactttt ggatgcggtc agcatcgcca
    10741 aagaaaacgg cgcgtccgtc atcgcactga cccgcaacga ttcgcctctg gcgcaacttg
    10801 ccgactgcgt gttgagcgtt gccacacagg aaaatgccga actctacacg cccatggttt
    10861 cccgcctctt gcagcttgcc gtcatcgaca ttctcgccat cggacttgcc ctgcgcttgg
    10921 gcgatgctgc cagcctgcaa ttgcagaaaa gcaaaaaaag catacacaac aagcacatcg
    10981 attacgacaa agattgacct tcagacggca tcccacaaat gccgtctgaa atgccgaaca
    11041 acggccgtcg gcggcttgcg gcagtttccg gcagcctttt catcccacaa caaaaaacct
    11101 cattcaggag catatagatg aaacactttc acgacttacc cgcatggccg aaattgtgga
    11161 accactttga cgacagcaaa acattgcata tgcgcgaaat gttcgagcaa gacccgcagc
    11221 gtgcggaacg ctactggctg caagtcggcg gactgacgct ggactactcc aaaaaccgca
    11281 tcaacgacga aaccatgtcg cttttgttcg agttggcgcg tgaagcaggc gtgccggagc
    11341 ggatgcggca gatgttccac ggcgaaaaaa tcaatacgac ggaaaaccgc gccgtcctcc
    11401 acgtcgccct tcgcaaccgc accaattcgc cgattgtggt tgacggtgaa gatgtgatgc
    11461 caaaagtcaa ccgcgttttg caacgtatgg gcgaatttgc acacgaagtc cgcagtggaa
    11521 gctggctggg ctataccaac caagtcatta ccgacgttgt caacatcggc atcggcggat
    11581 cggatttggg cccgttgatg atgtgtaccg cgctcaaacc tttcggtcat ccacgcctca
    11641 atatgcactt cgtctccaac gtggacggct cgcaactgcg cgacgtattg tccaaagtcc
    11701 accccgaaac cacgctgttc attatcgcct ccaaaacctt taccacgcag gaaacgctga
    11761 ccaacgcgct gaccgcgcgc gaatggtttt tgaatcatgc gggcgatgaa agcgccgtcg
    11821 ccaaacattt cgttgctgtt tccaccaacc aaaaagccgt tgccgaattc ggcatcgaca
    11881 ccgccaatat gtttgaattt tgggactggg tcggcggccg gtacagcctg tggtccgcca
    11941 tcggattgcc gattatgctg tatctcggcg aagaaaactt catcgaaatg ctcaacggcg
    12001 cgcacctgat ggaccaacat ttcatcaaca ctccgctcga gcgcaacctg cccgccatcc
    12061 tcgcccttat cggcatctgg tacatcaact actacggcgg cggaagccac gtcatcgcac
    12121 cttacgacca acacctccac cgcctgccca aattcatcca gcagctcgat atggaaagca
    12181 acggcaaaca ggttacgttg gacggcaaag cagtcggaca cgaaacctcg ccgattattt
    12241 ggggcgaaac gggcatcaac ggccagcacg ccttcttcca actgctgcac caaggcacgc
    12301 acatcacccc catcgacctc atcgcctcgc ttgaaaaacg cagcaacctg cccggacacc
    12361 acgaaatcct gcttgccaac gtcttcgccc aagcagaagc ctttatgcgc ggcaaaaccc
    12421 ccgacgaagt ccgcgccgaa ctcaaagcgc agggtatgga tgaggcgcgt atcgaagagc
    12481 tggttccgca caaaaccttc tccggcaacc gcccgaccaa cctcatcctg atggataagg
    12541 tcaacccccg caatatgggc agcctgattg ccatgtacga acacaaaacc ttcgtacaag
    12601 gcatcatttg gggcatcaac agcttcgacc agtggggcgt ggaactcggc aaacaactgg
    12661 ctaaaaccat tttgggcgaa ctgaccggcg aaaccgggcc gcaaaagcac gacagttcga
    12721 ccgaacgcct gatcaggctt tacctgcaaa ccaaccgcaa ataaaacctg cggaaaaatg
    12781 ccgtctgaac gccgaccgtt tcaaacggca tttttatcga acaggaaaac cgtcggtaaa
    12841 cttgcagagc gtgtgcaatc ccgatatgat ggtttgcata aatttaaaca tgtatgttcc
    12901 gcagctatgg cactgattaa agagccgttg gacaaagcga aacaaaggaa cgaagaactt
    12961 gaagcggcag aagaagcggc ggcgcaggag gcattgggtc gggagcagga agtcgaccgc
    13021 gtatccgaat gggaagaacg ctacaagctg tcgcgcagcg agttcgagca attctggaaa
    13081 ggattgcctc aaaccgtaca gaataagctg caagcctcac agaaaacatg gaaaagcggg
    13141 atggataaaa tctgtgccaa caatgcgaaa gctgaaggtg aaacgccaaa cggcataaaa
    13201 ttcagcgaac tggcatgcaa aacggcggaa accgaagcac gcttggaaga gctgcacaac
    13261 cgtaaaaaag cccttatcga cgaaatggcc agggaagcgg acaagaaaga actgccaaag
    13321 cggctctgaa cagcgcggtt caggcactgc ccgccgatat tgccgaaacc gtcatgcccg
    13381 agtaccgcaa ctgacaaaac ggtttgaatg ccaaatgcgc cgacggcgac gaatacggcg
    13441 tggcacaatc tgactgccgt accagagaaa tcaatgcgaa aaccaaagaa atccaaggtt
    13501 atctgattga ctgaaacttg gatgcgggaa tgtcggcggc ttttgcgttt ttgtcgtttt
    13561 tatagtgaat taaatttaaa ccgatac
//
LOCUS       DAXIFS010000036        13390 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.036, whole genome shotgun sequence.
ACCESSION   DAXIFS010000036 DAXIFS010000000
VERSION     DAXIFS010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13390
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.036"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(111..539)
                     /locus_tag="ACFOCA_000772"
     CDS             complement(111..539)
                     /locus_tag="ACFOCA_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HFC6987521.1"
                     /translation="MAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQ
                     PDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCS
                     LLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV"
     gene            complement(604..2352)
                     /locus_tag="ACFOCA_000773"
     CDS             complement(604..2352)
                     /locus_tag="ACFOCA_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HFC6987522.1"
                     /translation="MIHYKITPSPLDHEWHILLTFTQDDDLPIEISLPNWVPGSYLIR
                     DFSRHITSIHASCNGTSMPLEQIAKNRWHAAAVRGEWQIRYTVYAFDLSVRGSFLTTE
                     RGFFDGSCLFLKVEGTETLPHRLELTGIPSEWRIATTLPETGRFVFQAASYAELIDRP
                     VEMGLIEFLDFEAAGIPHTIALSGIYPDFDRNRLVSDIKKICETELAVFSSPAPFQKY
                     LFLLHVGDHIYGGLEHTDSTALLADRHSLPPYGMTDADDTYTTLLGLFSHEYFHAWNV
                     KSIKPAAFVPYDLDKENYTEQLWAFEGITSYYDDLFLARSRTISPESYLNLLAQGITR
                     VQQTRGRLRQTLAESSFTAWNKFYKPDENSPNAIVSYYQKGALAALCLDLIIRNRSNG
                     RHSLDTLMDKLYREWRDTHSGIPEKHWQIRCQEITGLDLEDFFQKALYSTEDLPLAEC
                     LATAGVGLTFLPLPRQHGGGYAEHICPVPPAGDFGARFKQNTDHIVLTHVFNSGSAES
                     AALCPQDKIIALDGYACTDFTAQWARYHVNAKINIHFFRAGILRQTVLTVQAAAADTA
                     ILHITDRNLLDNWLFG"
     gene            2679..4112
                     /gene="ccoN"
                     /locus_tag="ACFOCA_000774"
     CDS             2679..4112
                     /gene="ccoN"
                     /locus_tag="ACFOCA_000774"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFC6987523.1"
                     /translation="MDTQTYNYKVVRQFAIMTVVWGIVGMLVGVIVAAQLFAPALDLS
                     NIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGGWLPAFTFWGWQ
                     AVIVAAVVSFPMGWTQGKEYAELEWPIDILITLVWVAYAIVFFGTIAKRKIKHIYVAN
                     WFYGGFILAVALLHIVNNISIPAGLMKSYPVYSGAIDAMVQWWYGHNAVGFFLTAGFL
                     GMMYYFVPKQAARPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVLSL
                     ILFAPSWGGMINGIMTLSGAWDKLRTDPILKFLIVSLSFYGMSTFEGPMMSIKTVNAL
                     SHYTDWTVAHVHAGALGWVGFVTIGSVYYMIPRLFGKEQMHSTKLVEAHFWIATIGVV
                     LYIAAMWIAGVMQGLMWSSLNDDGTLTYSFVESVKRTMPYYVIRFAGGLLYLSGMCIM
                     AYNVYRTAIGGKAVDAEIPAVSQTQHH"
     gene            4139..4750
                     /gene="ccoO"
                     /locus_tag="ACFOCA_000775"
     CDS             4139..4750
                     /gene="ccoO"
                     /locus_tag="ACFOCA_000775"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFC6987524.1"
                     /translation="MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAP
                     GVKPYNALQVAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGS
                     KRTGPDLARVGGRYSDEWHRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKAL
                     RKVGTPYSDEEIAKAPEALANKSELDAVVAYLQGLGLALKNVR"
     gene            4755..4925
                     /locus_tag="ACFOCA_000776"
     CDS             4755..4925
                     /locus_tag="ACFOCA_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HFC6987525.1"
                     /translation="MDINGIRALFTVWIFICFLLVLYIVFNRRNKKNYDNAANSIFDE
                     NQDAQDKKSENR"
     gene            4949..5860
                     /gene="ccoP"
                     /locus_tag="ACFOCA_000777"
                     /pseudo
     CDS             4949..5860
                     /gene="ccoP"
                     /locus_tag="ACFOCA_000777"
                     /inference="COORDINATES: protein motif:HMM:TIGR00782.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
     gene            5936..6280
                     /locus_tag="ACFOCA_000778"
                     /pseudo
     CDS             5936..6280
                     /locus_tag="ACFOCA_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
     gene            6482..7891
                     /locus_tag="ACFOCA_000779"
     CDS             6482..7891
                     /locus_tag="ACFOCA_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HFC6987526.1"
                     /translation="MDTQIKTEADNQSNRRYLTVWRWHFYAGLLVMPFLTLLAVTGLG
                     MLLFANITGKEGERIHVVPQATVQPLSVQAEAARSAVNPETSSVVQYIAPRADDMVAV
                     FRVNNEGKATMVAVDPYTAKVVNTMPRNQGWYHTMDEIHSDMMLGSTGDYLLETAASL
                     TIIMIISGLYLWWVKRRGIKAMLLPSKGRARSWWRNLHGTFGTWVSLILLLFCLSGIA
                     WAGIWGGKFVQAWSQFPAGKWGVEPNPVSVVPTHGEVLNDGKVKEVPWVLELTPMPVS
                     GTTVGKDGINPDEPMTLETVDRFAREIGFKGRYQLNLPKGEDGVWTLSQDSMSYDMIS
                     PFADRTVHIDQYSGKILADIRFDDYNPFGKFMAASIALHMGTLGWWSVLANVLFCLAV
                     IFIGISGCVMWWKRRPTGAVGIVPPAQKVKLPVWWMMALPLLAIALLFPTALLAIAVI
                     WLLDTLLLSRIPVLRRWFK"
     gene            7992..11201
                     /gene="recC"
                     /locus_tag="ACFOCA_000780"
     CDS             7992..11201
                     /gene="recC"
                     /locus_tag="ACFOCA_000780"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HFC6987527.1"
                     /translation="MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRR
                     YLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSE
                     AFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
                     LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYL
                     QLLHKLSEHCDVFVFALNPSGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGR
                     DFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVS
                     AHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPHIESYTPFIEAVFGQAQPGAQAL
                     PYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLL
                     HDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADV
                     NQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLE
                     NEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPF
                     KVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLS
                     YIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGG
                     RSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQ
                     QQLAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSG
                     ELGRLWQQNFQTAAKQIDTAVLNSPKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAY
                     GKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIAQDRALQLLSEWM
                     AFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGNKVSKGQKDYTEVA
                     LVFGNASQNPLEQPLFENLARLLADTLAAAEKREGAGAA"
     gene            complement(11271..12839)
                     /gene="mtrF"
                     /locus_tag="ACFOCA_000781"
     CDS             complement(11271..12839)
                     /gene="mtrF"
                     /locus_tag="ACFOCA_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041421321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family antimetabolite efflux transporter
                     MtrF"
                     /protein_id="HFC6987528.1"
                     /translation="MSQTDTQRDGRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAAG
                     AYFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILTHTVKNFTGFAPLGTVLVS
                     LLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTASELGYVVLIPLSAII
                     FHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQIIHPDYVVGPEAN
                     WFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWA
                     GVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVT
                     RSLRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGATFLKEVG
                     LGGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDS
                     VTNIITPMMSYFGLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLG
                     LPVGPGAPTFYPAP"
     gene            13173..13385
                     /locus_tag="ACFOCA_000782"
     CDS             13173..13385
                     /locus_tag="ACFOCA_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987529.1"
                     /translation="MKNEIQKIMDKYDPWHEDDFESYEDIAKDVSLMTDKTFIEHYLL
                     EVYSEENGHFDQENVHAMIEEIKNAI"
BASE COUNT         3354 a         3234 c         3548 g         3254 t
ORIGIN      
        1 cactgtaaaa acggagaagg acagaggacg gcagtaaggt ttgccgtcct ctttttcaag
       61 ttgcggtgga atgccgcttg aaggtgtggt ttaaacgttt cggcttgtaa tcagacgcgg
      121 gcgttgtcca gccgctctct gaagttttcc aaatttacgc ctgccgcttg ggcgcggcgg
      181 atgatttcgt caaccggcat accttctgcc gcccggcgga agccccacag gagggagcag
      241 cgcgtaccgg tccggcaata ggcaaggacg ggatattcgg cttgtccgat gagttggcgg
      301 aaggtttcga catcgtgttt ttggatgtcg cgtgcggtaa cgggttggtg atggaatcca
      361 gtaacgcctg cttgttccag ccactgtttg atttgggcga agtcgggttg cgattcttct
      421 tcgcggtcgg ggcggttgca gatgacggtt ttgatgccca gttgcgcgat ttgttccgca
      481 tcggctttgg tcagttgcgg agaaatatag aggtgttcgt caagtttcag aatggccatt
      541 ttgtttcctt tactttgcgg ttgtttttca gacggcattt tgtgtgcaat gccgtctgaa
      601 agtttaaccg aacaaccagt tgtccaacag gttccggtct gtgatatgta ggatggcagt
      661 atccgctgcc gctgcctgaa ccgtcaagac ggtttgacgc aatatgccgg cacggaagaa
      721 gtggatattg atttttgcat tgacgtggta tcgggcccat tgtgcggtaa agtcggtgca
      781 ggcataaccg tctaaagcaa tgattttgtc ttgcgggcac agtgccgcag attccgcgct
      841 gccgctgttg aagacatggg tcaggacgat gtggtcggtg ttttgtttga aacgtgcgcc
      901 aaaatcgcct gccggcggga cggggcagat gtgttctgcg tatccgccgc cgtgttgtcg
      961 gggaagtggc aggaaggtca gtcccacgcc tgcggttgcc aggcattcgg caagcggcaa
     1021 atcttcggta ctgtataacg ctttttggaa aaaatcttcc aaatccaagc cggtaatttc
     1081 ctgacagcgg atttgccagt gtttttccgg aatacccgag tgtgtgtccc tccactcccg
     1141 atagagtttg tccattaacg tatcgagaga atgtctgccg ttgcttcggt tgcgtattat
     1201 cagatcaagg cacaatgcgg caagcgcgcc tttctggtag tagctgacga tggcgttggg
     1261 gctgttttca tccggtttgt aaaatttgtt ccacgcggta aaactcgatt ccgccaaggt
     1321 ctgcctcaaa cggccgcggg tttgttgtac gcgcgtaatg ccttgtgcca gcaggtttaa
     1381 ataagattcg ggcgagatgg tgcggctgcg tgccaaaaac aaatcgtcgt aataggatgt
     1441 aataccttcg aatgcccata gttgttcggt atagttttct ttgtcgaggt cataagggac
     1501 gaacgcggca ggtttgatgg atttgacgtt ccacgcgtga aaatattcgt gggagaaaag
     1561 tccgagcaat gtggtgtagg tatcgtcggc atcggtcata ccgtacggcg gaaggctgtg
     1621 gcggtcggcg agcagggcgg tgctgtcggt gtgttccaaa ccgccgtaaa tatggtcgcc
     1681 gacgtggagc aggaacaaat atttttgaaa cggggcaggg gaggaaaaca ccgccagttc
     1741 tgtttcgcag atttttttga tatccgaaac cagcctgttg cggtcgaaat cgggatatat
     1801 gccgcttaag gcaattgtgt gcggaatgcc tgccgcctca aaatctaaaa attcaatcaa
     1861 gcccatctcg acaggtcggt caatcaattc ggcataagat gccgcctgaa agacaaacct
     1921 ccctgtttcc ggcagcgttg tggcaatacg ccattcggac ggaatacccg tcaattccaa
     1981 gcggtgcggc agcgtttccg ttccttcgac tttcaaaaac aggcacgatc cgtcaaaaaa
     2041 accgcgttct gtcgtcagga aagaacctcg aaccgacaaa tcgaatgcat atacggtgta
     2101 gcggatttgc cactcgccgc gtacggcggc agcgtgccag cggttttttg caatttgttc
     2161 gagcggcatg gacgtgccgt tacaggatgc atggatagaa gtgatgtggc gggaaaaatc
     2221 ccgaatcaga tagctgcccg gtacccaatt cggcaggctt atttctatag gaagatcatc
     2281 atcttgtgtg aatgtcagca ggatgtgcca ctcgtggtcg agaggggacg gggttatttt
     2341 ataatgaatc ataactatca aatatatcgt taaacgggat ggattaaata cctttaaaat
     2401 gcagcttaac ctacatcaat aaagtgccac aaaaagggaa aattggaaac aaaagcaatg
     2461 gcggtcgggt tgtaatttat tataacaata tgatttatat gtaataaaaa acagattaag
     2521 caaagggctc gtcggcggcg cgaatgtaat tccgcttggc gtaataaggc agatatgtta
     2581 aatttagaaa aaattacgct tgcccggatt gcaccttaaa caggctgcgg aagcggcagg
     2641 ataaaaatct ttattcccat aaattcatgg agactctcat ggacacacaa acttacaact
     2701 acaaagtggt gcgccagttc gccatcatga ctgtagtttg ggggattgtg ggtatgttgg
     2761 tcggcgttat cgtcgccgcc cagctttttg ctcctgccct cgacttgtct aatatcggac
     2821 cttggttcca cttcggccgc ctgcgtccgc tgcacaccaa tgcggttatt ttcgcatttg
     2881 gcggttgtgg cctgatcggc acatcatact acgttgtcca acgtacttgt aatacccgtc
     2941 ttttcggcgg ttggctgccg gcatttacct tttggggctg gcaggcggta atcgttgccg
     3001 ccgtcgtcag cttccctatg ggttggaccc aaggtaagga atatgccgaa ctggaatggc
     3061 cgatcgatat tctgattact ttggtttggg tggcttacgc catcgtattc ttcggtacga
     3121 ttgccaaacg taagattaaa catatttacg ttgccaactg gttctacggc ggctttattt
     3181 tggcggtcgc acttttacac atcgtcaaca atatcagcat cccggccggt ttgatgaagt
     3241 cataccccgt ctattccggt gcgattgatg ctatggttca atggtggtac gggcataacg
     3301 ccgtgggctt cttcctgact gccggcttct tgggtatgat gtactatttc gtacccaaac
     3361 aagcagcccg ccccgtttac tcctaccgcc tgtccgtcgt tcacttctgg gcgttgattt
     3421 tcacctatat gtgggcgggt ccgcaccatc ttcactacac tgcgctgcct gactggacgc
     3481 aatctttggg tatggttctg tctttgattc tgttcgcacc ctcttggggc ggtatgatta
     3541 acggcatcat gaccttgtcc ggcgcgtggg acaaactgcg tacagacccg attcttaaat
     3601 tcctgattgt atccttgtcc ttctacggta tgtctacctt tgaaggcccg atgatgtcga
     3661 ttaaaacggt caatgcattg agccactata cggactggac cgtcgcgcac gttcatgcgg
     3721 gtgcgttggg ctgggtaggc tttgtaacca tcggttccgt ctattacatg attccccgtc
     3781 tgttcggcaa agaacagatg cacagcacca agctggtaga agcacatttt tggattgcga
     3841 ccatcggcgt ggttctgtat atcgctgcca tgtggattgc cggtgtgatg cagggtttga
     3901 tgtggagttc tttgaacgat gacggtacgc tgacctactc gtttgtcgaa tccgtaaaac
     3961 gcaccatgcc ttactacgtg atccgttttg caggtggttt attgtatctg agtggtatgt
     4021 gcattatggc gtacaacgtg taccgcacag ccatcggtgg taaagcagtc gatgccgaaa
     4081 tccctgcggt ttcccaaaca cagcaccact aaaatactaa gaaagatagg ctaccaaaat
     4141 gaaattacaa caattggctg aagaaaaaat cggcgttctg attgtgttca cgctgcttgt
     4201 agtcagtgtc ggtctgttga ttgaagttgt gcccttggcc tttaccaagg cggcaacaca
     4261 gccggcaccg ggcgtgaagc cttacaatgc cttgcaggtt gccggacgcg atatttacat
     4321 ccgtgagggc tgttacaact gccactctca aatgattcgt ccgttccgtg cggaaaccga
     4381 gcgttacggt cattactctg ttgccggaga gtcggtttac gaccatcctt tccaatgggg
     4441 ttccaaacgt accggtcctg atttggcacg tgtaggcggc cgctattccg acgaatggca
     4501 ccgtatccac ctgctgaatc cccgtgatgt cgtgcctgag tccaatatgc cggcattccc
     4561 atggcttgca cgcaataaag tcgatgtcga tgcaaccgtt gccaacatga aggctttgcg
     4621 taaagtaggt actccttaca gtgatgagga aattgcgaaa gcgcctgagg ctttggcaaa
     4681 caaatccgag ctggatgctg tagtcgccta tctgcaagga ttgggtctgg ctttgaaaaa
     4741 cgtaaggtaa catcatggat attaacggta ttcgcgctct tttcacggta tggatcttta
     4801 tctgtttcct gttggtactc tatatcgtct tcaacaggcg gaataagaaa aactacgata
     4861 atgccgcaaa cagcattttt gatgaaaacc aagatgcgca agataagaaa agcgaaaacc
     4921 gttaatattg tgataacgga gcaaaacaat gaacacaaca tcccaattta ccagtaattt
     4981 ctggaatata tatattgcag ttattgtctt actgagcttt atcgctttgg cttggctgct
     5041 gctgtctcaa aatgttgtca aacgtccgaa gaagggcgaa gaagtacaaa ctacgggtca
     5101 tgagtgggac ggcattgccg aatacgacaa tccgctgccc cgctggtggt tttggctgtg
     5161 tgttttgacg tggctgttcg gtatcggtta tttggttatg tatccgggtg tcggcgacta
     5221 caaaggtctg ctgaaatgga ccagccataa ccaatatgaa aaagaggtca aaaaagccga
     5281 tgagcaatac ggcaaactgt atgccaagtt tgcggatatg ccgattgaaa aagtggcaaa
     5341 agaccctcaa gccaagcaaa tcgcccaaaa cctgtttaac acttattgta tccagtgcca
     5401 cggctctgat gctaaaggct ctaaaggttt tccgaatctg accgatagcg attggttgtg
     5461 gggcggtgat cccgataaaa tccacgagac catcgaaaaa ggccgtgttg cgactatgcc
     5521 tgcctggggt cctgctttgg gcgaagaagg cgtgaaagac gttgcccatt atgtgatgtc
     5581 cctttcaaaa cccgaaggtc agtatgatga ggaacgtgcc gcgcgcggac aagccttgtt
     5641 cagcggtccg cctgccaact gtttcacttg ccacggcgat aagggacaag gtatccaagg
     5701 tttgggtccg aacctgactg atgacgtgtg gttgtggggc ggtacgcaaa aatccattat
     5761 cgaaaccatt accaacggtc gcagcagcca aatgcccgct tggggacatt tcttggataa
     5821 agacaaactg catattatga ctgcttatgt atggggtctt tccgataaag acggtaaagc
     5881 tccggtgaaa aaagccgagc ctgcaccgac tcccgcaccg gcggcagaac ccgcagcctc
     5941 tgctcctgca gaagcagcac aagccgcgtc cgaagccaaa cctgccgcag cagaacctaa
     6001 agccgaggaa aaagctgcac ctgctgccaa agcggacggc aaataggttt atgaaaccgt
     6061 ttgtgccgcc tgccatggca atgcgattcc gggtattccc catgtaggca tcaaagccga
     6121 ttgggccgac cgcatcaaaa aaggcaagga cacgttgcac aaacacgcga tcgaaggttt
     6181 caatacgatg cccgcaaaag gcggtcgcgg cgatttgagc gatgatgagg ttaaagctgc
     6241 ggttgactat atggtcaacc agtcaggcgg caaattctaa cttgactgag tttccgatat
     6301 tatcggttat gaaaatccag attcagtatt gaatctggat tttttgtttt aacgggcatc
     6361 cggttttaaa cgcagactgc ctatttgttg taatgaattt tgactttagt cataaagaat
     6421 tagtctttat tgtttataat cgcgcatcat cacgatagcc ctattttcaa aaggacgatt
     6481 aatggataca caaatcaaaa ctgaagccga caatcagagc aaccggcgtt atctgaccgt
     6541 ttggcggtgg catttttatg ccggtctgct ggttatgcct tttcttaccc tgcttgccgt
     6601 tacgggtttg ggtatgctgc tgtttgccaa tattaccggt aaggagggcg agcggattca
     6661 tgttgtgccg caggcaacgg tacaacctct gtctgttcag gcggaagcgg cacgcagtgc
     6721 cgttaatccg gaaacttcgt ccgtcgttca gtatattgcg ccgcgtgccg atgatatggt
     6781 tgccgtgttc cgtgtcaaca atgagggcaa ggcaacgatg gtcgcggtcg atccttatac
     6841 ggcaaaagtg gtcaacacca tgccgcgcaa tcagggttgg tatcacacga tggatgaaat
     6901 ccacagcgat atgatgctcg gttcgacagg cgattatctt ttggaaacgg ctgcatcgct
     6961 gacgattatc atgataatca gcggtttgta cctttggtgg gtgaaacggc gcggcatcaa
     7021 ggcgatgctg ctgccgtcaa aaggcagggc gcgttcttgg tggcggaatc tgcacggcac
     7081 gtttggaact tgggtgtcgt tgattttgct gttgttctgc ctgtcgggta ttgcttgggc
     7141 gggtatttgg ggcggcaagt tcgtacaggc ttggagtcag ttccctgccg gtaaatgggg
     7201 tgtcgaaccg aaccccgttt cagtcgtgcc gacccacggc gaggtattga atgacggcaa
     7261 ggttaaggaa gtgccgtggg ttttggagct tacgcctatg cctgtttcag ggacgactgt
     7321 gggcaaagac ggcattaacc ctgacgagcc gatgacattg gaaaccgtcg accgctttgc
     7381 gcgggaaatc ggtttcaaag ggcgttatca gttgaatttg cccaaaggcg aggacggcgt
     7441 atggactttg tcgcaggatt ctatgagtta cgacatgatc agcccgtttg ccgaccgcac
     7501 ggtacatatc gaccagtaca gcggcaaaat ccttgccgac atccgttttg acgattacaa
     7561 cccgttcggc aaatttatgg cggcaagcat tgcgctgcat atggggactc tgggctggtg
     7621 gagcgtgttg gcgaacgtct tgttctgcct tgccgtcatt tttatcggta tcagcggctg
     7681 cgtgatgtgg tggaaacgcc gtccgaccgg agcggtgggc atcgttccgc cggcgcagaa
     7741 agtcaagctg ccggtttggt ggatgatggc attgccgcta ttggcaatcg cactgctctt
     7801 cccgaccgca ctgcttgcca ttgccgtgat ttggctgttg gatacgctgc tgttgtcgcg
     7861 gattcctgtt ttgaggagat ggtttaaatg accaaatgcc gtctgaaagg ttcagacggc
     7921 attttgtttg aaggcggacg ggggaaaggc tatataatcc cgaatacttt tccgcaactt
     7981 ttgtcgaaat catgttttat ctgtatcaat ccaaccgtct tgaaacgctg gcggcattgt
     8041 ttgcccgcat tcaaaaagtc aaaccgctga aatcggcttt acagcccgaa cagattattg
     8101 tgcagagtca ggggatgcgc cgctatctca atacctgcct cgcccgcgat ttgggcgtgg
     8161 cggcgaattt gtcgttcagc ctgcccgccg gcctgacgtg gaagctgatg aaaaaactga
     8221 ttcccggtat tccggaactc agcccgtttg cacccgaagt catgcgctgg cggctgctgg
     8281 atttgttccg cagtgaagca ttccggaata cggcagaatt tgaagatgtg aggaatgtgc
     8341 tgcaagacta tctgggcagc ggcgaatcgg cagattacca gcttgcggga cagcttgcgg
     8401 acatattcga ccaatacctc gtgtaccgtc ctcagtggat agacgcttgg cagcagggca
     8461 ggcggctcgg tttgggcgac gacgaaatct ggcagtccaa actgtggcgt tacctcgacg
     8521 atggcaggca gagcgcgccg caccgtgtcg cgttgtggga aaagctgctt gccgcgttgg
     8581 acaaggataa gctgcccgag cgttatttcg tgttcggcat ttccacgatg gcgccgatgt
     8641 atcttcagct tttgcacaag ctgtccgaac attgcgatgt gttcgtgttc gcactcaatc
     8701 cgagcgggat gtattggggc aacgtcatcg aagcggcgca aatcctcaaa ggcggcggcg
     8761 atcccgattt aactcaggca gggcatccgc tgctcgcctc attgggcaag caggggcgcg
     8821 actttttcga ctttttgaac gaaatggaaa tagaaggaga aacgccggta tttgaagaag
     8881 gcgggcgcga tacgcttttg cacgccctgc aaaccgatat tcaaaacctg aaaatgccgt
     8941 ctgaaaatgt gggaagcgtc aacacgggcg acggctcgat acgcatcgtc tccgcacaca
     9001 gccccttgcg cgaattgcag atactcaaag acaagctgtt gaaaattctg catgaacatc
     9061 ccgattggca gccgcatgat atcgccgtat taaccccgca catcgaatcc tatacgcctt
     9121 ttatcgaagc cgtgttcgga caggcgcagc ccggtgcgca ggcattgccg tattccgttt
     9181 cagacgtgaa aatcagccgc cgacaaccgc tgtttcatgc tttgtcatgc ctgttcgact
     9241 tgttggaaag ccgatttgaa gtcgataaag tgcttgtgct tttagaaacc gcacccgtgt
     9301 tgcgccgttt cggactgact gaggacgatt tgccgctttt gcacgatatg gttgccgatt
     9361 tgaacgttca ctggggtttg gacggagaaa tgcgcggcgg cacggatcag ctgtttacct
     9421 ggaagcaggc ggtagaacgc atgatattgg gctggatgct gcccgaaggc ggcaacccga
     9481 tgtggcagga tgtcagcgcg tggtatgccg acgtgaacca aaccgccctg ttcggacgtt
     9541 ttgccgccct cctcgaaacc ctgtcggata ttgtacggat atggcggcag cccgcaacga
     9601 tcggcgaatg ggtggcgcgt tgccgggatt tgcttgaaac attgttccaa gctgaagccg
     9661 atgaccaaaa gtcagtccaa aaccttgaaa acgaatgggt caaatggcag gcggaaacag
     9721 aattggcgca attttccgga cagttgccgc aacaaaccgt catccgccat atccgacgtt
     9781 tcctcgacag cgaaagcgag gcaggctttt tacgcggcgg catcaccttt tgcagtatgg
     9841 tgccgatgcg gagcctgccg ttcaaagtca tctgcctgtt gggtttgaac gacggagatt
     9901 ttccccgcaa taccaaagcc gccgtattcg acctgattgc caaacatccc gccaaaggcg
     9961 accgcgcccg ccgcgatgac gaccgctacc tcttcctcga agccctcatc agcgcgcgcg
    10021 aaatcctcta cctgtcctac atcgggcgcg acatccgcaa agacgaagag cttgctccgt
    10081 cttcgctgtt gggcgaactc atcgacacag ttgccgctat ggcgggcatc ggtagccgcc
    10141 aacttgcaca aaactggata gaacagcatc cgctgcaagc cttctcgcgc cgatattttc
    10201 aagaaggcgg acgttcagac ggcatattcg gcacgcgtac cgactacgcc actgcgctcg
    10261 gacaaacgcc cgaaccgccg caaccctttt tcgaccaacc cgtagaaaac gccgaacctg
    10321 ttgccgaaat cggacaggac gaatttatcc gtttctggcg caaccccgtc aaagtatggc
    10381 ttcagcagca gcttgcgtgg agcgaacccc atatcggcga agcctgggag cctgccgaac
    10441 ccttcgagcc gcaacacgcc gatcaaatcg ccgaaaccta catcgaagca cggcgcgaag
    10501 gacgggattt tgcccaaacc gccgcccgca tcggggcgga aagcctcctg ccgtcgggag
    10561 agttgggcag actttggcag cagaacttcc aaactgctgc caaacaaatc gacacggcgg
    10621 ttttaaacag ccccaaactg ccaccgcttt catatgccat accgtcggac gggcaaatcc
    10681 tgaaaggcag cttgggcaat ctgtaccgct gcggacaagt gttttacgcc tacggcaaac
    10741 ccaacgcgcc gcaacgtatc gcttttctgc tggaacacct gatattttgc gccgttatgc
    10801 cgtctgaagc cgaaacgcgg caaaccttta tcgtccaatc cggagaaacc gaaatattgg
    10861 cggaaatcgc gcaagacagg gcattgcagc tattgtcgga atggatggcg tttttcaata
    10921 tcgggcaaaa ccgcccgctg ccgttttttg ccaagacctc gcttgccgct gccgaagcgt
    10981 ttgcccaaaa acaagattgg gaagccgccc tgaaaaaagc ccaaaccgcc tattacggca
    11041 acaaagtcag caaagggcag aaagactata ccgaagtcgc cctcgtgttc ggcaacgcaa
    11101 gccaaaaccc actcgaacaa cccctgtttg aaaacctcgc ccgcctgctt gccgacacgc
    11161 ttgccgcagc ggaaaaaagg gaaggggccg gagcagcctg acgggatgga aaggcaaatg
    11221 ccgtctgaaa acagcaaaaa ggttttcaga cggcattttg tttatcgtgt ttaaggtgcg
    11281 ggatagaatg tgggcgcgcc gggaccgacg ggcaggccca aaacaaatac ccaaatgcag
    11341 aataaggcaa tccacgcaat caagaagaaa gcggaatacg gcaacatcat agaaatcagc
    11401 gtacccacgc ccgcatcttt tttgtatttg atcaccgtcg ccataatcag cccgaaataa
    11461 ctcatcatcg gcgtaataat attggtaacg gaatcaccga tgcggtaagc ggcttgaatg
    11521 acttcgggcg cgtagccggc caacatcagc atagggacga aaatcggcgc agttaccgcc
    11581 cattgcgcgg aggcggagcc tatcatcaga ttgataaaag cacaaattaa aataaaaccg
    11641 ataaacaaca cgctgccgcc caagccgact tcttttaaga acgtcgcccc tttaacggca
    11701 atatattgcc caatattcgt ccaattaaaa aatgcgacaa actgtgcggc aaaaaagatg
    11761 atgaccaaat aaagccccag agtactcatc gattcggcca tcgcattaac gacttcctgt
    11821 tcgccgcgca aacttcgggt tacccggcca taaacaatgc ccggcagtgc aaacaacaag
    11881 aaaataaaaa caacaattga ttttaaaaac ggcgaaccgg aaaccaatcc tgtttcagga
    11941 tgacgcaaaa taccgtcggc agggacgatg ctccaagcca atagggcgga taaggcaaca
    12001 aacaccacgc cagcccaaat taatccttta tattccaaag gcgtgatttc attggaatgc
    12061 cgaatgtctt tttcttcttg tgacaaatct gattgataag ggcccaattg cggttcgacg
    12121 attttttcag taacaaaata accaatcaaa gcaatcacaa acgtactggc taccataaaa
    12181 aaccagttgg cttcagggcc tacgacgtag tcgggatgga tgatttgcgc cgcctgttgg
    12241 gtgatgcctg ccaagagcgg atcgattgtg cctaagaaca gattggccga ataaccgccc
    12301 gaaacgccgg cgaaagccgc agccagaccg gcaagcggat ggcggccgag ggaatgaaag
    12361 atgatggcgg acaaagggat taggacgaca tagcccaatt cagaagcggt attagataaa
    12421 atccctgtaa aaacaaccat aaaagtagtg agtttgcgtg gagattttgt gagcaataag
    12481 cgcattaatg cggaaatcaa gcccgatttt tccgcaatcc ccacgcccaa taaagaaacc
    12541 aacaccgttc ccaacggcgc gaaaccggtg aaatttttaa cggtatgcgt caggattttg
    12601 atcaaaccgt cagcatcgag caggctgaca acgtgaatca aaccgtcatc ggcacgtcct
    12661 ttcgcaccaa cagggcgcgg atcggggacg gatagtccga aatacgcacc ggcggcagag
    12721 gcaatcagca ataacacaat gaaaataata aaaagcgtaa ccgggtgcgg caacatattg
    12781 cccagccatt cgactgtgcg taaaaatcgt ccgtcccgtt gcgtatcggt ttgactcatc
    12841 tgcttctcct taaaaaaaat atattgagtg cattaaattt ttgaatgtaa catgaagtgt
    12901 tttgtaagca aactaaaata atcgtatatg tatataaccg taatagatta aaacagaaaa
    12961 tgcccacatc gttattctca taaaggcggt aatccgaaaa cttgacgtta aagccttatc
    13021 aggaatgact ggaactcaac aaagcggttt cccgctttcg cggaaatggc gggattttcg
    13081 gtttttgttt gcaaaaatgc cggagaaaaa tgcagtttac attttgaatg gtattgttat
    13141 taattgtaaa taaatattgg aaggtaaatg atatgaaaaa tgaaattcaa aaaattatgg
    13201 acaaatatga tccatggcat gaagatgatt ttgagtcgta tgaagacatt gccaaagatg
    13261 tatcgttgat gacagataaa acgttcattg aacattattt gttagaagtt tattcagaag
    13321 aaaacggaca ttttgaccaa gagaatgtcc atgcaatgat agaagaaatt aaaaatgcaa
    13381 tttagtgaat
//
LOCUS       DAXIFS010000037        13251 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.037, whole genome shotgun sequence.
ACCESSION   DAXIFS010000037 DAXIFS010000000
VERSION     DAXIFS010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13251
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.037"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            380..1534
                     /gene="obgE"
                     /locus_tag="ACFOCA_000783"
     CDS             380..1534
                     /gene="obgE"
                     /locus_tag="ACFOCA_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFC6987530.1"
                     /translation="MKFIDEAKIEVAAGKGGNGATSFRREKFVPRGGPDGGDGGKGGS
                     VWAEADENTNTLVEYRFVKRYQAKNGEKGHGSDRYGAGADDIVLKMPVGTLIRDLDTG
                     ENVADLTYHGQRVCLAKGGKGGLGNIHFKSSVNRAPKQSTPGEEGEARSLQLELKVLA
                     DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENHSFVMADIPGLI
                     EGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPAEEALAIINELRKYDEELYG
                     KPRWLVLNKLDMLDEEEAQTRTAAFLEAVGWDSPKPDDRFQFDMETPRLFQISALTHQ
                     GTQELVHQINQYLTEKKRIEAEKAEAEQAAAKAEIAEQQPKTDTGVFKPE"
     gene            1617..2666
                     /locus_tag="ACFOCA_000784"
     CDS             1617..2666
                     /locus_tag="ACFOCA_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6987531.1"
                     /translation="MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLL
                     KILYSLLEVTSNTKNRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKL
                     QNGTTHSSLNFSSNSSSQVNVQSIGLKENEYTPTPIFLPSRELITLCPWFTSLYQNQS
                     IPFEETWFDACMQLNHPLAKGPRETKIRELLEPIENAMGGKVSEEQGRFYLSLTNTGG
                     KIEAPLVAEGLRKFVMIARLIATGALLDKGYLFWDEPEANLNPKLIKVAARIIWSLSQ
                     QGIQVFIATHSLFLLRELELLKLENNTDLPVRFFSLIASDDGTKVEQGNSINDLNTLI
                     LLDENIMQADRYLNI"
     gene            3354..4775
                     /gene="cysS"
                     /locus_tag="ACFOCA_000785"
     CDS             3354..4775
                     /gene="cysS"
                     /locus_tag="ACFOCA_000785"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFC6987532.1"
                     /translation="MTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVM
                     VVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADA
                     LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSL
                     DDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFG
                     NTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFI
                     RVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTR
                     LYTTLKNTPPADPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQL
                     AGCLKALGGIIGLLQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRI
                     RDLLNEHKIILEDNAGGTTWRRG"
     gene            4858..5637
                     /locus_tag="ACFOCA_000786"
     CDS             4858..5637
                     /locus_tag="ACFOCA_000786"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6987533.1"
                     /translation="MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADL
                     SADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFDR
                     LSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK
                     NWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGW
                     RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVMEYDYAAE"
     gene            5624..5968
                     /locus_tag="ACFOCA_000787"
     CDS             5624..5968
                     /locus_tag="ACFOCA_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987534.1"
                     /translation="MLPNKVLGKYDWNVDGKTGIGAAWVVAAFILPILVWAIFMLSRM
                     QGWLAPTKANPTWALVWLLICMPCLLIASKCLGWKGWRRVVNIFACLTVCAILSVPAS
                     LLIAFTLRDLLK"
     gene            5979..6509
                     /locus_tag="ACFOCA_000788"
     CDS             5979..6509
                     /locus_tag="ACFOCA_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6987535.1"
                     /translation="MQGFELEDLTLWLIRDAGEDQMWIDRWAISYPVVQMSEASAGQS
                     IGEWQAGLRTAFERIRGKYVAVVAHGAGAAAFLAWLYQADILTRKKIANIILVPQRPD
                     IFPDDAEHTFQRVRCPCRAALVVPEHGGVPHGWAQKQADLWNARLLVSPHSGSLNGML
                     GGWQWGMKLMQEMLLA"
     gene            complement(6602..7717)
                     /gene="asd"
                     /locus_tag="ACFOCA_000789"
     CDS             complement(6602..7717)
                     /gene="asd"
                     /locus_tag="ACFOCA_000789"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFC6987536.1"
                     /translation="MKVGFVGWRGMVGSVLMQRMKEENDFAHIPEAFFFTTSNVGGAA
                     PDFGQAAKTLLDANNVAELAKMDIIVTCQGGDYTKSVFQALRDSGWNGYWIDAASSLR
                     MKDDAIIVLDPVNRNVIDNGLKNGVKNYIGGNCTVSLMLMALGGLFQNDLVEWATSMT
                     YQAASGAGAKNMRELISGMGAVHAQVADELADPAGSILDIDRKVSDFLRSEDYPKANF
                     GVPLAGSLIPWIDVDLGNGQSKEEWKGGAETNKILGRSDNPTVIDGLCVRIGSMRCHS
                     QALTLKLKKDLPISEIEAILAGANDWVKVIPNEKEASIRELTPAKVTGTLSVPVGRIR
                     KLGMGGEYISAFTVGDQLLWGAAEPLRRVLRIVLGSL"
     gene            7893..8474
                     /locus_tag="ACFOCA_000790"
     CDS             7893..8474
                     /locus_tag="ACFOCA_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6987537.1"
                     /translation="MEEKNDYTDAASDNRNGQEIEVGIAGAGDRILAALLNQLFTFLV
                     LLVPFAGLIAFAIKNEGRIGGSEEIFGLLLGMTSFWVGLAGILVYTVVQIYYMSRDGQ
                     SLGKKIMRIRVLKTDGRNPGFVGTVLVREIAWSVLVAIIAAVIGLAVGDNGENAINLL
                     AFLANFVLLFMVKRDRRTLYDILADTVVVKLPK"
     gene            complement(8536..9390)
                     /gene="folD"
                     /locus_tag="ACFOCA_000791"
     CDS             complement(8536..9390)
                     /gene="folD"
                     /locus_tag="ACFOCA_000791"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFC6987538.1"
                     /translation="MSAQLINGKEVSQKRLQAVAEAVAQRQQNNLHTPCLAVVLVGGD
                     PASAVYVRNKKTSCQKCGIKSLSYELPESTSQEELLALVDRLNVDSEVDGILVQLPLP
                     KHLDSQAVLERISPDKDVDGFHPYNVGRLAVKMPLMRPCTPKGVMTLLEAYGIDPKGK
                     KAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKG
                     EWIKPGAVVIDVGINRLDDGSLCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTL
                     HAASLHDA"
     gene            9613..9690
                     /locus_tag="ACFOCA_000792"
     tRNA            9613..9690
                     /locus_tag="ACFOCA_000792"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9648..9650,aa:Pro,seq:tgg)
     gene            9715..9791
                     /locus_tag="ACFOCA_000793"
     tRNA            9715..9791
                     /locus_tag="ACFOCA_000793"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9749..9751,aa:Arg,seq:tct)
     gene            9819..9894
                     /locus_tag="ACFOCA_000794"
     tRNA            9819..9894
                     /locus_tag="ACFOCA_000794"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9852..9854,aa:His,seq:gtg)
     gene            10030..10536
                     /locus_tag="ACFOCA_000795"
     CDS             10030..10536
                     /locus_tag="ACFOCA_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HFC6987539.1"
                     /translation="MVDAWSVPDFESKICPPEALSERLARLPRPLVFTNGCFDILHRG
                     HVTYLAQARSAGAALVLALNTDASVRRLGKDGDRPINPLENRAAVAAALESVDLVTWF
                     DGDTPAALIEAVKPEILVKGGDWAADKIVGAAETLARGGQVFSIPFLHQTSTTKTLAK
                     IRAAEGGK"
     gene            10533..12311
                     /locus_tag="ACFOCA_000796"
     CDS             10533..12311
                     /locus_tag="ACFOCA_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/type III pantothenate kinase"
                     /protein_id="HFC6987540.1"
                     /translation="MTVLKLSHWRVLAELADGLPQHVSQLARMADMKPQQLNGFWQQM
                     PAHIRGLLRQHDGYWRLVRPLAVFDAEGLRELGERSGFQTALKHECASSNDEILELAR
                     IAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAA
                     VACRRALSRLGLDVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVLPKE
                     VENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRD
                     HGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLRSDDRPVSVPKR
                     RDSERFLLLDGGNSRLKWAWVENGTFATVGSAPYRDLSPLGAEWAEKVDGNVRIVGCA
                     VCGEFKKAQVQEQLARKIEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRRFSRNA
                     CVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYPFPTTT
                     GNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLAENT
                     VRVADNLVIHGLLNLIAAEGGESEHT"
     gene            12424..13248
                     /locus_tag="ACFOCA_000797"
     CDS             12424..13248
                     /locus_tag="ACFOCA_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFC6987541.1"
                     /translation="MKWLFTLLAVLNIAVFGGTVGYKLAVKATGGVPENRAVENTPPA
                     TPAADNAAASVEDTAALLKPGDILTEEQAEQLRLKKEAEQKKLREKKQREEKARREKL
                     AAEKAQAERENGAADALCAAQASLTMDEDDYHRIKGLLGKWSHVASRSVEKRTAKAKP
                     ADKTYRVVLPVSADAENQAAELSAKGFNPIPFDGALSLGVGNSRENAQALQNRLAGAG
                     FGGAHIVEHFAEADRQDDSLSVSRMTVLFTGVNAADADEIRKITSLYGKLNLKSCK"
BASE COUNT         3207 a         3362 c         3667 g         3015 t
ORIGIN      
        1 gtccacagga caatggtggt cagaatgccg atgaaaccgg caacggtcag ccagtgcagc
       61 gcgcgtgtca acgggtcgta aacggcaggt tggtttgtgt tcataaaaaa cttatatatg
      121 taacggtttg aacggacatt ccgtcgggtc ggaatgtcaa aaaggcgcga ttgtaccaaa
      181 gaagttggac ataattttgt ttgcaggctg aagatttgct taaaaattca ttaagatggg
      241 cggaacaaat agtttgggta cggcgtgttg aaataccgct tatcccttat aatagcgtcc
      301 gaaattctgt tcagacggca tcaaaacaca cggtaatccg tctgaacccc catttgaaac
      361 caacaaacaa gagcattgaa tgaaattcat cgacgaagca aaaatcgaag tcgccgcagg
      421 caaaggcggt aatggcgcaa ccagtttccg ccgcgaaaaa ttcgtaccgc gcggcggtcc
      481 ggacggcggc gacggcggca aaggcggcag cgtttgggca gaagccgacg aaaacaccaa
      541 caccctcgtc gaataccgct tcgttaaacg ctaccaagcc aaaaacggcg aaaaaggcca
      601 cggttccgac cgttacggcg caggtgcgga cgacatcgtc ctcaaaatgc ccgtcggcac
      661 ccttatccgc gacctcgaca ccggcgaaaa cgttgccgac ctcacttatc acggacagcg
      721 cgtctgcctt gccaaaggcg gcaaaggcgg cttgggcaac atccacttca aatcctccgt
      781 caaccgcgcc ccaaaacaat ccacgcccgg cgaagaaggc gaagcccgtt ccctgcaact
      841 cgaactcaaa gtcctcgccg atgtcggctt attgggtatg cccaacgccg gcaaatccac
      901 cctgattacc gccgtatccg ccgcacgccc caaaatcgcc aactacccct tcaccaccct
      961 gcatccaaac ttaggcgtgg tacgcatcga cgaaaaccac agcttcgtga tggccgacat
     1021 ccccggcctg attgaaggcg cggcagaagg cgcgggtttg gggcatcgtt tcctcaaaca
     1081 cttatcgcgc accggattat tgctgcacgt cgtcgatttg gcgcccttcg acgaaaccgt
     1141 caacccggcc gaagaagcac ttgccatcat caacgaattg cgcaaatacg atgaagaact
     1201 ttacggcaaa ccgcgctggc tggtgctgaa taaactcgac atgcttgacg aagaagaagc
     1261 ccaaacgcgc actgccgcct tcctcgaagc cgtcggctgg gactccccca aacccgacga
     1321 ccgtttccaa tttgacatgg aaaccccgcg cctcttccaa atcagcgcgc tgacccacca
     1381 aggcacgcag gaattggtac accaaatcaa ccaatacctg accgagaaaa aacgtatcga
     1441 agccgaaaaa gcagaagcgg aacaggcagc ggcaaaagcc gaaattgccg agcagcagcc
     1501 gaaaacggat acgggcgtgt ttaagccgga gtgaaaaaag aaagggtttc agacgatatt
     1561 tgttctacaa aaggttgttt gaaacaattt taaagcaaga ttgaaatgga ttaaaaatgt
     1621 catctaacca atatatccag tcgcttgagt tgacaaactt taccgttctt ccaaacgata
     1681 cttttgaatt ttctgaaaat ctcaatgtta ttgttgccga aaacggttgt ggcaaaacac
     1741 atttgttaaa aattttatac agcctgctag aagtaacatc taacaccaaa aacagattac
     1801 tgaaaacaga attgcaaaaa agttttgccg ataaattact gaatgttttc cgtcccgatt
     1861 ccttgggcag gttgagcaaa cgtttgcagg ggcgcgggcg tacggaaatc gttttaaaac
     1921 tgcaaaacgg cactacgcat agtagtctga atttttccag taactcatca tcgcaagtca
     1981 atgttcaaag catcggattg aaagaaaatg aatatactcc gacacctatc ttcttaccca
     2041 gccgcgaatt aattacactt tgcccttggt tcacttcttt gtatcaaaac caaagcatcc
     2101 ctttcgaaga aacttggttt gatgcctgta tgcaattaaa tcacccgctt gccaaaggcc
     2161 ccagagaaac aaaaattcga gaattgctcg aacctattga gaacgcgatg ggcggaaaag
     2221 tatctgaaga acaaggaagg ttttatctat cgctgacaaa tacgggcggt aagattgaag
     2281 cacctttggt agcagagggt ttgcggaaat ttgtcatgat tgcccggtta atcgcaacag
     2341 gggcattgct ggataaaggc tatctatttt gggatgaacc ggaagctaat ctgaatccta
     2401 aattgatcaa agtggctgcc cgtattattt ggtctttatc tcaacagggt attcaggttt
     2461 ttattgcaac acactcttta ttcttattga gagaattgga acttttgaag cttgaaaata
     2521 acacggattt acctgtacgt tttttctcgt tgattgcttc cgatgatgga acaaaagtgg
     2581 agcaagggaa cagtattaat gatttgaaca cattgatatt gttagatgaa aacattatgc
     2641 aggcagacag gtatctgaat atttgaggtt aagctatgac tacaatcaca gaaaagagat
     2701 taacctttgc ttttcctgaa gattattacg ttaccaagta tgacgaatgg gaacattata
     2761 aaatttttca gaacagttgt aatttacgta ataaaattga tacaaatgaa aagggaaaga
     2821 acgggataaa tcaaagtgta gatgacgata atggcagctc aggtgtagat ataatagccc
     2881 ttcatgaatc gacactttgg ctaatcgaaa ttaaagatta ttaccgactt gggcttgagc
     2941 caaatgccca atcaatagat gaaaaacttt ctgacctacc atatttaatc gcaagaaaaa
     3001 ttcgagattc attggcagga ttggtttctg ctaaatttaa agcagaaaaa caggaagaaa
     3061 aagatttttc tcgcttggct ttagattgta acgaaataaa aatagtcctt catattgaaa
     3121 tgcctagtat aagaagtaaa ctttatccct cgtcatcaga tttagcaaac ttattaaaag
     3181 ataagtttaa attatcagaa tttacaaaaa attttgcaaa ctgttatgca gaaccaattt
     3241 tcacaaatat cagccatatt aataatccgc aactacgtaa tgttccttgg tccgtatcta
     3301 caggaacaga acagaaatta tcatccgagc aacaaagatt aatccatagt cccatgacca
     3361 ccatctacaa cacccttacc cgccaaaaag aaccctttgc ccccatcgac cctgaaaacg
     3421 tgcgtatgta cgtttgcggc atgactgttt acgactattg ccacttaggc catgcccgtg
     3481 tgatggtggt gtttgacatg attgcccgtt ggttgcgcga gtgcggctat ccgctcactt
     3541 atgtacgcaa catcaccgac atcgacgaca aaatcattgc ccgtgcggct gaaaacggcg
     3601 agaccatcgg cgagctgact gcgcgtttca ttcaggctat gcacgaagat gccgatgctt
     3661 tgggcgtgtt gcgtcccgat atcgagccga aggcgacgga aaacattccg caaatgattg
     3721 cgatgattga aaccctgatt caaaacggca aggcttatcc tgccgccaac ggcgacgttt
     3781 actacgccgt gcgcgagttt gccgcttacg gccaattatc gggcaaatcg ttagacgacc
     3841 tgcgtgcagg tgagcgtgtg gaagtggacg gtttcaaacg cgatccgctt gattttgtgt
     3901 tgtggaaagc ggcgaaagca ggcgaaccgg cgtgggaaag cccttggggc aggggacggc
     3961 cgggctggca cattgaatgc tccgccatga gtgaaaacct gttcggcaat accttcgaca
     4021 tccacggcgg cggcgcggat ttgcagtttc cgcaccacga aaacgaaatt gcccaaagcg
     4081 tcggcgcgac ggggcatacc tgcggtcatc atcacgcgca aacccaccac gggcaaagca
     4141 tcgccagcca cgtcaaatat tggctgcaca acggctttat ccgcgtggac ggcgaaaaaa
     4201 tgtccaaatc actgggcaac ttcttcacca tccgcgaagt gttgaaacaa tacgaccccg
     4261 aagtcgtgcg cttcttcatc ctgcgcgccc actaccgcag cccgttgaac tattccgacg
     4321 cgcatttgga cgacgcaaaa ggcgcgttga cgcgtttgta tacgactttg aaaaatacgc
     4381 cgcccgccga tccgatgccg tctgaagccg gcgatgacta cacgcgccgc ttttatgttg
     4441 cgatgaatga tgattttgat acggtgaaag cggtggcggt gttgttcgaa cttgccggcg
     4501 aagtgaacaa aaccaataac gcgcaactgg caggctgcct gaaagccttg ggcggcatca
     4561 tcggactgct gcaacgcgac ccgaccgagt tcctgcaagg cggcgcggct tcagacggcc
     4621 tctccaacga agaaatcgaa gacttgattg cccggcggaa acaggcgcgc tccgataaaa
     4681 actgggcgga atccgaccgc attcgcgacc ttctgaacga acacaaaatc attttggaag
     4741 acaacgccgg cggcacgact tggcggcgcg gttgaaatcc atcgaaaagg gtaaatgtgc
     4801 cgcattttgc ccttttttgt tcagacggca tttttattgt gagaacttat ttttattatg
     4861 cttaaaatca tttccgccaa cgtcaacggc atccgctccg cctacaaaaa aggtttttac
     4921 gaatatatcg ccgcatcggg cgcggacatt gtctgcgtgc aggaactcaa agcgcaggag
     4981 gctgatttgt ctgccgatat gaaaaatccg cacgggatgc acggccattg gcattgcgcc
     5041 gagaagcgcg gttacagcgg cgtggcggtg tacagcaaac gcaaacccga caatgtgcaa
     5101 atcggtatgg gcattgaaga attcgacagg gaagggcggt ttgtgcgttg cgatttcgac
     5161 aggttgagcg ttatttcgct ttacttgccc agcggcagca gcgcggaaga acgccagcag
     5221 gtgaaatacc gtttccttga tgcgttttac cctatgctcg aagcgatgaa aaacgaagga
     5281 cgcgacattg tcgtttgcgg cgactggaac atcgcccacc aaaacatcga cctgaaaaac
     5341 tggaaaggca atcagaaaaa ttcgggcttc ctaccggaag aacgcgagtg gataggcaag
     5401 gttatccaca agctcggttg gacggatatg tggcgcacgc tttatcccga tgtgccgggc
     5461 tacacgtggt ggagcaaccg cgggcaggcg tatgcgaaag atgtcgggtg gcgcatcgat
     5521 tatcagatgg ttacgcccga acttgccgcc aaagccgtgt ccgcacacgt ttataaagat
     5581 gaaaaatttt ccgaccatgc gccgctggtc atggagtatg actatgctgc cgaataaagt
     5641 tttgggtaaa tatgattgga atgtggacgg aaaaacagga ataggcgcag catgggttgt
     5701 cgctgcgttt atcctgccca tattggtgtg ggcgatattt atgttgtcgc ggatgcaagg
     5761 ctggcttgcg ccgaccaagg caaacccgac atgggcgttg gtgtggctgc tgatctgcat
     5821 gccctgcctg ctgattgcgt ccaaatgttt gggttggaaa ggctggcggc gggtggtgaa
     5881 tatttttgcc tgcctgaccg tctgcgccat attgagcgta cccgcttcgc tgctcatcgc
     5941 ctttaccctc cgggacctgc tgaaataggc ggggcggtat gcagggtttt gaactcgaag
     6001 atttgacgct ttggctgata cgcgatgccg gagaggatca gatgtggata gaccgttggg
     6061 cgatcagtta tcccgtcgtg cagatgtccg aagcgtcggc cggtcaaagc ataggggaat
     6121 ggcaggcagg gcttcggacg gcatttgaac gcatacgtgg caaatacgtc gccgttgtcg
     6181 cacacggtgc gggcgcggcc gcatttttgg cgtggctgta tcaggcagac atcctgacac
     6241 ggaagaaaat tgccaacatc atccttgtac cgcagcgtcc cgatattttt cccgacgatg
     6301 cggaacacac tttccaacgc gtccgctgtc cctgccgtgc cgcattggtt gtacccgaac
     6361 acggcggcgt gccgcacggt tgggcgcaaa aacaggcgga tttgtggaac gcccgcctgt
     6421 tggtttcccc gcattcgggc agtttgaacg gcatgctcgg cggctggcag tggggtatga
     6481 agctgatgca ggaaatgttg ctggcgtgaa cgcttgcctt atcggaattt cggttaactg
     6541 gggttgcaag gaaaatgccg tctgaaacag gcttcagacg gcatttccat tcaaacaggg
     6601 cttacaggct gcccaacacg atacgcaata cgcggcgcag cggctcggcc gcgccccaca
     6661 agagctggtc gccgacggtg aacgcgctga tgtattcgcc gcccataccc agtttgcgga
     6721 tgcgtccgac ggggacggac agcgtgccgg taactttggc gggggtcagc tcgcggatgc
     6781 tggcttcttt ttcgttgggg atgactttca cccagtcgtt cgcgcctgcc aaaatcgctt
     6841 cgatttcgga aatgggcagg tcttttttca acttcagggt aagggcttgg ctgtggcagc
     6901 gcatagagcc gatgcggacg cacaggccgt caatcacggt tggattgtcg ctgcggccga
     6961 ggattttgtt ggtttccgcg ccgcctttcc attcttcttt ggactggccg ttgcccaaat
     7021 ccacgtcaat ccacggaatc aggctgccgg cgagcggtac gccgaagttg gctttcggat
     7081 agtcttcgct gcgcaggaaa tcagatactt tgcggtcgat gtcgagaatc gagccggcag
     7141 gatcggcaag ttcgtccgcc acttgggcgt gaaccgcgcc cataccgctg atgagttcgc
     7201 gcatgttttt cgcgcctgcg ccggaagcgg cttggtaggt catgctggtt gcccattcga
     7261 ccaaatcgtt ttggaacagg ccgcccaaag ccatcagcat cagggaaacg gtacagttgc
     7321 cgccgatgta gtttttcacg ccgtttttga ggccgttgtc gatgacgttg cggttgacgg
     7381 ggtcgaggac gataatcgcg tcgtctttca tacgcagcga ggatgccgcg tcaatccagt
     7441 agccgttcca gccgctgtcg cgcagggctt ggaagacgga tttggtgtag tcgccgcctt
     7501 ggcaggtaac gatgatgtcc atttttgcca gctcggcaac gttgttcgcg tccaataatg
     7561 ttttagccgc ctgaccgaaa tcaggggctg cgccgccgac gttggaagtg gtaaagaaaa
     7621 acgcttcggg aatgtgggcg aagtcgtttt cttctttcat acgctgcatc aaaaccgaac
     7681 cgaccatacc gcgccagccg acgaaaccta ctttcattgt gttgctcctt gaggaaaaat
     7741 cgttaataaa attatgtatg gcgtaaagga agcgttttaa cgccgtattg ggaaaatgta
     7801 aagttcttta tcgggatttc tttaagtatt ggcgttttcg gtgtcgtggc ggtagaatcg
     7861 gggtcagtta agaacaatta tcaggaacgg atatggaaga aaaaaacgac tacaccgacg
     7921 cggcatccga caaccgcaac gggcaggaaa ttgaagtcgg aattgccggc gcaggcgacc
     7981 ggatacttgc cgcgctgctg aaccaattgt ttaccttttt ggttttgttg gtgccgtttg
     8041 ccggactgat tgctttcgcc atcaagaatg aaggcaggat tggcggcagt gaggaaatat
     8101 tcgggctgct tttgggcatg acttcctttt gggtaggact ggcgggcatt ttggtttata
     8161 ccgtcgttca aatctactat atgagtcggg acgggcagtc attgggtaag aaaatcatga
     8221 gaatcagggt gttgaaaacc gacggccgca atcccggttt tgtcggcacg gttttggtac
     8281 gcgaaatcgc atggtcggtt ttggttgcca ttattgccgc cgttatcggt cttgcagtag
     8341 gtgacaacgg agaaaacgcc atcaacctgc tggcattcct tgccaacttt gtcctgctct
     8401 ttatggtcaa acgcgatcgc cgcacgcttt acgacatact ggcggatacg gttgtcgtca
     8461 agctgcccaa ataaacggac acggcaaaat gccgtctgaa agcctttcag acggcatttt
     8521 tatcttcaga accgctcaag catcgtgcag tgaagccgcg tgcagggtgt tttccatcaa
     8581 tgtggcaatc gtcatcggac ccacgccgcc gggaacgggc gtaatcatcg ccgcccgttc
     8641 ttttgccgtt tcaaattcca cgtcgccgca caggctgccg tcgtccagac ggttgatgcc
     8701 cacatcaata acgaccgcgc cgggtttgat ccattcgcct ttgacaaagt tcggaatgcc
     8761 tacgccgacc accaaaatat cggccccggc aacctcgtct gccagatttt cggtcgcact
     8821 gtggcagacc gttaccgttg cgcgcgccag cagcaattcc aaagcctgcg ggcggccgac
     8881 aatattcgac gcgccgacca cgaccgcttt tttccccttc ggatcgatgc cgtaagcctc
     8941 caaaagcgtc atcacgccct tgggcgtaca cgggcgcatt agcggcattt tgactgcaag
     9001 cctgcccaca ttgtaaggat ggaagccgtc cacgtcctta tccggcgaaa tacgttccaa
     9061 aaccgcctgg ctgtcgaggt gcttcggcag tggcagctga accagaatac cgtccacttc
     9121 ggaatcgaca ttcaggcggt cgaccagtgc cagcagttct tcctgcgatg ttgattcggg
     9181 cagctcgtaa gacagtgatt tgatgccgca tttttggcag gaggttttct tgttgcggac
     9241 ataaaccgcg ctggcagggt cgcctccgac caaaaccacg gccaggcaag gcgtgtgcag
     9301 attgttctgt tggcgttgcg ccaccgcttc ggcaaccgcc tgcaggcgtt tttgcgaaac
     9361 ttctttacca ttgatcagtt gtgccgacat atccgtcctt ttgttaaaca ggtagaaaat
     9421 gctgaaaatt atcgcatttt ccgtttgttt ttacagcagg atgccgaaaa taaatttgcc
     9481 ctgaaataaa atacggctgt ttggacggat taaatatttt ttcaaatcaa aaaactatat
     9541 ttttcatctt ggtgtcttga aaataaatgt tgacgcatct ttccctgagt tgtatagttc
     9601 gcttcttcaa gtcggggcgt agcgcagccc ggttagcgca tctgctttgg gagcagaggg
     9661 tcgtgagttc gaatcccacc gccccgacca atcaatcagc acgaatcggc atgagcgccc
     9721 gtagctcaac cggatagagc accgaccttc taagtcgggg gttacaggtt cgattcctgt
     9781 cgggcgtgcc aagaatttga ttgaaaaccg tttttatggt ggctgtagct cagttggtag
     9841 agccccggat tgtgattccg gttgtcgtgg gttcgagccc catcagccac cccagataaa
     9901 ggcccgtact tttcggtacg ggtcttttcc cgtttgcgcg tactgtccgc gccgccggct
     9961 ttgcctttcg catatgcttc tgtatcatgt gggtttttct gtcttttatg gtttttgtcg
    10021 gaggctttga tggttgacgc ttggtctgtc cctgattttg aatcgaaaat ctgtccgccc
    10081 gaggcattgt ccgaacggtt ggctcggttg ccgcgcccgc tggtgtttac caacggctgt
    10141 ttcgacatcc tccacagggg gcacgttact tatctggcgc aggcgcgttc ggcaggggcg
    10201 gcgttggtgc tggcgttgaa taccgatgct tcggtgcggc gtttgggcaa ggacggcgac
    10261 cgcccgatta atcctttgga gaaccgtgcc gccgttgccg ccgctttgga aagtgtggat
    10321 ttggtaacgt ggtttgacgg ggatacgccg gcggcgttga ttgaggcggt caaacctgag
    10381 attttggtca agggcggcga ttgggctgcg gataagattg tcggtgcggc agaaacgttg
    10441 gcgcgcggcg gtcaggtgtt ttcaattccg tttctgcacc agacttcgac aacgaagact
    10501 ttggcaaaaa tccgtgcggc agagggcgga aaatgacggt tttgaagctt tcgcactggc
    10561 gggtgttggc ggagcttgcc gacggtttgc cgcaacacgt ctcgcaactg gcgcgtatgg
    10621 cggatatgaa gccgcagcag ctcaacggtt tttggcagca gatgccggcg cacatacgcg
    10681 ggctgttgcg ccaacacgac ggctattggc ggctggtgcg cccattggcg gttttcgatg
    10741 ccgaaggttt gcgcgagctg ggggaaaggt cgggttttca gacggcattg aagcacgagt
    10801 gcgcgtccag caacgacgag atactggaat tggcgcggat tgcgccggac aaggcgcaca
    10861 aaaccatatg tgtgacccac ctgcaaagta agggcagggg gcggcagggg cggaagtggt
    10921 cgcaccgttt gggcgagtgt ctgatgttca gttttggctg ggtgtttgac cggccgcagt
    10981 atgagttggg ttcgctgtcg cctgttgcgg cagtggcgtg tcggcgcgcc ttgtcgcgtt
    11041 taggtttgga tgtgcagatt aagtggccca atgatttggt tgtcggacgc gacaaattgg
    11101 gcggcattct gattgaaacg gtcaggacgg gcggcaaaac ggttgccgtg gtcggtatcg
    11161 gcatcaattt tgtcctgccc aaggaagtag aaaatgccgc ttccgtgcaa tcgctgtttc
    11221 agacggcatc gcggcggggc aatgccgatg ccgccgtgtt gctggaaacg ctgttggcgg
    11281 aacttgatgc ggtgttgttg caatatgcgc gggacggatt tgcgcctttt gtggcggaat
    11341 atcaggctgc caaccgcgac cacggcaagg cggtattgct gttgcgcgac ggcgaaaccg
    11401 tgttcgaagg cacggttaaa ggcgtggacg gacaaggcgt tctgcacttg gaaacggcag
    11461 agggcaaaca gacggtcgtc agcggcgaaa tcagcctgcg gtccgacgac aggccggttt
    11521 ccgtgccgaa gcggcgggat tcggaacgtt ttctgctgtt ggacggcggc aacagccggc
    11581 tcaagtgggc gtgggtggaa aacggcacgt tcgcaaccgt cggtagcgcg ccgtaccgcg
    11641 atttgtcgcc tttgggcgcg gagtgggcgg aaaaggtgga tggaaatgtc cgcatcgtcg
    11701 gttgcgccgt gtgcggagaa ttcaaaaagg cacaagtgca ggaacagctc gcccgaaaaa
    11761 tcgagtggct gccgtcttcc gcacaggctt tgggcatacg caaccactac cgccaccccg
    11821 aagaacacgg ttccgaccgc tggttcaacg ccttgggcag ccgccgcttc agccgcaacg
    11881 cctgcgtcgt cgtcagttgc ggcacggcgg taacggttga cgcgctcacc gatgacggac
    11941 attatctcgg gggaaccatc atgcccggtt tccacctgat gaaagaatcg ctcgccgtcc
    12001 gaaccgccaa cctcaaccgg cacgccggta agcgttatcc tttcccgacc acaacgggca
    12061 atgccgtcgc cagcggcatg atggatgcgg tttgcggctc ggttatgatg atgcacgggc
    12121 gtttgaaaga aaaaaccggg gcgggcaagc ctgtcgatgt catcattacc ggcggcggcg
    12181 cggcaaaagt tgccgaagcc ctgccgcctg catttttggc ggaaaatacc gtgcgcgtgg
    12241 cggacaacct cgtcattcac gggctgctga acctgattgc cgccgaaggc ggggaatcgg
    12301 aacatactta aaaaatacac cctttttcaa cacggggcgg tatccgtccg aatccgtccg
    12361 gattctgccg cccgacagac tgccgcccag gcgggcgggg tttcaaacat tgaggaaatt
    12421 ctaatgaaat ggctcttcac ccttttggcg gtactcaata ttgccgtatt cggcggcacg
    12481 gtgggctata aattggccgt taaagcgacg ggcggcgtgc cggaaaaccg ggccgtcgaa
    12541 aacacgcccc ccgcaacgcc cgccgccgac aatgcggcgg catccgtgga ggatacggcg
    12601 gcactgctca aaccgggcga catcctgacc gaagagcagg ccgagcagtt gcgcttgaaa
    12661 aaggaagcgg aacagaaaaa actgagggag aaaaaacagc gcgaggaaaa agcccgccgc
    12721 gaaaaactcg ccgccgaaaa ggcgcaggcg gaacgcgaaa acggcgcggc ggatgcctta
    12781 tgcgccgcgc aggcaagcct cacgatggac gaagacgact accaccgcat caaagggctt
    12841 ttgggcaaat ggtcgcacgt tgccagcagg agcgtcgaaa aacgcaccgc caaagccaaa
    12901 cctgccgaca aaacctaccg cgtcgtcctg cccgtttccg ccgatgccga aaatcaggcg
    12961 gcggagctgt ctgccaaagg tttcaacccc ataccgtttg acggcgcatt gagtttgggt
    13021 gtcggcaaca gccgggaaaa cgcccaagcc ctgcaaaacc ggcttgccgg cgccggattc
    13081 ggcggggcgc atattgtcga acactttgcc gaagccgaca ggcaggacga ttctttgagc
    13141 gtgtcgcgta tgacggtttt gtttaccggc gtgaatgccg ccgatgcgga cgaaattcgt
    13201 aaaatcacgt ccctatacgg caaactgaac ctcaagtctt gcaaataggc g
//
LOCUS       DAXIFS010000038        13241 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.038, whole genome shotgun sequence.
ACCESSION   DAXIFS010000038 DAXIFS010000000
VERSION     DAXIFS010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13241
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.038"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(44..811)
                     /locus_tag="ACFOCA_000798"
     CDS             complement(44..811)
                     /locus_tag="ACFOCA_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HFC6987542.1"
                     /translation="MSSNKASFFTRLRRLCRLTVWLFKTGKNLRGIDGGCPESRNRAV
                     IELGRGALTALDIGLEVGRPAPEHPNGVLVAANHVSWLDIFAMSAVYPSSFIAKQEIK
                     SWPVLGKMGQNAGTVFINRNSRRDIEPINRAVYETLQRGQNVSFFPEARTSSGLGLLP
                     FKAALFQSAIDAGAKVLAVALRYYDETGKRTARPSYADVGLPTCLWRIVSMKKLTIKV
                     DFVCVADAAESEDRYALKDKIEESIRAVVADDADIAV"
     gene            complement(899..1726)
                     /gene="mutM"
                     /locus_tag="ACFOCA_000799"
     CDS             complement(899..1726)
                     /gene="mutM"
                     /locus_tag="ACFOCA_000799"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HFC6987543.1"
                     /translation="MPELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEI
                     LSGRQVLSCGRRAKYLIVRFQTGILLIHLGMSGSLRIFTPSDGRIGRPDRHDHVDIVF
                     SDGTVMRYRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCADYLYVRLKAQKRAV
                     KLALMDNAVVVGVGNIYANESLFRAGISPHRPANRLKKKECALLVETVKAVLRRAIET
                     GGSTLRDFVDSDGKSGYFQQEYTVYGRHNQPCPQCGGLVVKETLGQRGTFYCPNCQK"
     gene            complement(1778..2443)
                     /locus_tag="ACFOCA_000800"
     CDS             complement(1778..2443)
                     /locus_tag="ACFOCA_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HFC6987544.1"
                     /translation="MDSWFEDTAMGRYVAKLEQDFFGRYLDSYRFSGMCAVQVGGPWL
                     SLSEDVVCVPRDMSMSAENMALADVSADMLLFPHTLEGGVPSQILSEAHRILKPSGRL
                     MLTGFNPYSLWGFSRWFDGERLPEKRFCLPLPELKRQLADVGFDIEFGKFMVYLPPVS
                     SLGQIRFWRFMEKAGDRWWPQCAAVYGLVLVKRAAGVTPLPAWDGYLGGKALAAGAAR
                     IAD"
     gene            2622..4598
                     /locus_tag="ACFOCA_000801"
     CDS             2622..4598
                     /locus_tag="ACFOCA_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6987545.1"
                     /translation="MSKLKTIALTASGLSVCPGFLYAQNTSSHQIGLAIMRLNSSILD
                     LPPTKQYFQSGSLWSELRQGFRMGEVNPELVRRHESKFIASHSYFNRVINRSRPYMYH
                     IANEVKKRNMPAEAALLPFIESAFVTKAKSHVGASGLWQFMPATGRHYGLEKTPVYDG
                     RHDVYAATDAALNYLQYLYGLFGDWPLAFAAYNWGEGNVGRAINRARAQGLEPTYENL
                     RMPNETRNYVPKLLAVRNIIATPQSFGMNISDIDNKPYFQAVEPDRPLDNEAIARLAG
                     ITQSELLALNPAFNVPAFIPKSKRKLLLPVASVQTFQSNYLNAAPDSLFSWEVYTPAA
                     KTSLSDISTATGMSIADIKRLNNLNGNLVNAGRSILVAKNGKTLQTASESVVSIDIDN
                     TPDTYRSNMPAGTVNVGIARIRPAAAQTADITVAPLPQKTVRTEPDPLVRIAEPALAT
                     AAAQPQTEKQTAMPSETQTATLAQIIPQNDMQAADELMQLVARNNLRRQAEETISAVI
                     GTPDTVAEHNISSSPQHTVAADGKRRARLETRVAKAADGEAEISPLHASIHRVVEGDT
                     LFNIAKRYNVSVADLIVANNIKGNTIQKGQVLRLAQAAPAQTRIEKVSYTARKGDTFK
                     SIAARFNIHIDDIRRLNPNLNTINPGQRVKLIGS"
     gene            4666..5358
                     /locus_tag="ACFOCA_000802"
     CDS             4666..5358
                     /locus_tag="ACFOCA_000802"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HFC6987546.1"
                     /translation="MKLIKYLQYQGIGSRKQCQWLIAGGYVFINGTCMDDTDADIDSS
                     SVETLDIDGEAVTVVPEPYFYIMLNKPEDYETSHKPKHYRSVFSLFPDNMRNIDMQAV
                     GRLDADTTGVLLITNDGKLNHNLTSPSRKIPKLYEVTLKHPTGETLCETLKNGVLLHD
                     ENETVCAADAVLENPTTLLLTITEGKYHQVKRMIAAVGNRVQHLHRRRFAHLETENLK
                     PGEWKFIDCPKF"
     gene            5899..7214
                     /locus_tag="ACFOCA_000803"
                     /pseudo
     CDS             5899..7214
                     /locus_tag="ACFOCA_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519747.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
     gene            7458..8114
                     /gene="cmk"
                     /locus_tag="ACFOCA_000804"
     CDS             7458..8114
                     /gene="cmk"
                     /locus_tag="ACFOCA_000804"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - (d)CMP kinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HFC6987547.1"
                     /translation="MNRQKVIAIDGPGASGKGTVAARVAAALGYDYLDTGALYRLTAL
                     YAQKQGVGWHDEENVSELAKKLPAVFSGSRILLGGEDVSDGIRTEAIGMGASAVAQLP
                     KVRAALLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESKIRAERRAKQIGIP
                     CEGLAFERILSDIEARDEADRNRKVAPLKQQPDALLLDTSRLTIEETVKKVLDWYREV
                     "
     gene            8270..9955
                     /gene="rpsA"
                     /locus_tag="ACFOCA_000805"
     CDS             8270..9955
                     /gene="rpsA"
                     /locus_tag="ACFOCA_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFC6987548.1"
                     /translation="MSMENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLK
                     SESLIDVAEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEA
                     MENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKL
                     DKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL
                     LHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYP
                     QGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL
                     EIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLV
                     HLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVND
                     KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVT
                     VDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGTTSLGDLLKAKLSGEQE"
     gene            9966..10280
                     /locus_tag="ACFOCA_000806"
     CDS             9966..10280
                     /locus_tag="ACFOCA_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HFC6987549.1"
                     /translation="MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLAR
                     GQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALKEN
                     AN"
     gene            complement(10630..11037)
                     /locus_tag="ACFOCA_000807"
     CDS             complement(10630..11037)
                     /locus_tag="ACFOCA_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFC6987550.1"
                     /translation="MTYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDN
                     DLQWLGLLQCLKNTGMSLKDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKR
                     YLDLLEYKLAFYQKAKALGSVKAVNLPQIPETA"
     gene            11185..12294
                     /locus_tag="ACFOCA_000808"
     CDS             11185..12294
                     /locus_tag="ACFOCA_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase (NAD+)
                     activity, zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase [NAD(P)+] activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HFC6987551.1"
                     /translation="MKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDA
                     FTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVSSVKPGDHVIPLYTAECGECEFCCSGK
                     TNLCVSVRDTQGKGLMPDGTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEAN
                     HEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPSKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALES
                     AHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPKMVEDSMKGD
                     IELEPFVTHTMTLDQINKAFDLMHEGKSIRAVIHY"
     gene            12303..13130
                     /gene="fghA"
                     /locus_tag="ACFOCA_000809"
     CDS             12303..13130
                     /gene="fghA"
                     /locus_tag="ACFOCA_000809"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011961786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046294 - formaldehyde catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HFC6987552.1"
                     /translation="MKLIEQHQIFGGSQQVWAHHAQTLQCEMKFAVYLPNNPENRPLG
                     VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVASDSSPRGEQVPNDDAYDLGQGAGF
                     YLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQE
                     RYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQG
                     LEDEFLPTQLRTEDFIETCRAANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK"
BASE COUNT         3511 a         3633 c         3047 g         3050 t
ORIGIN      
        1 atccgcaaaa gcgaatcata ctgccacatt ccggcaaccg gtttcagaca gcgatatccg
       61 catcgtcggc gacaacggca cggatgcttt cttcgatttt atcttttaaa gcataacggt
      121 cttcgctttc cgccgcatcc gccacgcaaa cgaaatcgac ttttatcgtt aattttttca
      181 tagacacaat gcgccacagg caggtcggca aaccgacatc ggcatatgag ggacgagccg
      241 tcctttttcc cgtttcgtca taataacgca gcgcgaccgc caaaaccttt gcccccgcat
      301 caatggcgga ttggaacagc gcggctttga acggcaggag ccccagtccg gaggaagtcc
      361 gcgcttcggg gaaaaaactg acgttttgac cgcgttgcaa ggtttcgtag acggcgcggt
      421 taatcggttc gatgtcgcgc cgcgaattgc ggttgatgaa caccgttccc gcgttctgcc
      481 ccatcttgcc caataccggc cagcttttga tttcctgctt ggcgataaag ctgctcggat
      541 aaaccgcgct catcgcgaaa atatccagcc aggacacgtg gttggcggca accaagacac
      601 cgttcggatg ttcgggtgcg ggcctgccca cctccaatcc gatatccaaa gccgtcagag
      661 cccccctgcc caactcgatt accgcccgat tgcgcgactc ggggcagccg ccgtcaatac
      721 cgcgcaggtt tttgccggtt ttgaatagcc agaccgtcaa gcggcacaag cggcgcagac
      781 gtgtaaaaaa tgaagcttta tttgaagaca tgaacaattc tttcccgata atcggtgttt
      841 gttgttgaaa cgttcggacg gcataccgat aaaatgccgt ctgaaaccgt tttccgccct
      901 atttctgaca attcgggcag taaaacgtgc cgcgctgccc caaagtttct ttcacaacca
      961 aaccgccgca ctgggggcac ggctgattgt gccgcccgta caccgtatat tcctgttgga
     1021 agtagccact tttgccgtcg ctgtccacaa aatccctcaa ggtactgccg cccgtttcaa
     1081 tggcgcgccg caacaccgct ttgacggttt caaccaaaag cgcacactct ttctttttca
     1141 gacggttggc aggacggtgg ggcgaaatgc ccgctctgaa caggctctcg ttggcataaa
     1201 tgttgcccac accgaccacg accgcattgt ccatcagggc aagtttgacc gcgcgtttct
     1261 gcgccttcag cctcacatac agataatccg cacaaaatgc ctccgacaaa ggctccggcc
     1321 ccagtttttc caacagcgga tgatgttctt cgattccctc ataccaaagt atcgcgccga
     1381 actttctcgg atcgcggtaa cgcatgaccg tgccgtctga aaacacaata tcgacgtgat
     1441 cgtgtctgtc cggcctgccg atacgtccgt ccgacggcgt aaaaatccgc aagctgcccg
     1501 acatccccaa gtgaatcagc aaaatccccg tttggaaacg gacaatcaga tatttggcac
     1561 gcctgccgca ggacaaaacc tgccgaccgg acaaaatctc ccccaaatcg ggattgatct
     1621 gccagcgcag cttcaattgg cgcaatacca cggcttccac cgttttccct tcaatatgcg
     1681 gcgcgatgcc gcgcaacgtc gtttccactt ccggcaattc cggcataacc cctcccgaca
     1741 tttcttctga cagatgccgt ctgaaagacg gctgtcccta atccgcaatc cttgccgcac
     1801 ccgccgcaag ggctttgccg cccaaatacc cgtcccacgc gggcaggggc gttacgcccg
     1861 ccgccctttt gaccaaaacc aaaccgtaca ctgcggcaca ctgcggccac caacggtcgc
     1921 ccgccttttc cataaaccgc caaaagcgta tttgcccgag cgacgaaacg ggcggcagat
     1981 acaccataaa tttcccaaat tcaatatcga aaccgacatc cgcaagctgc cttttcaact
     2041 cgggcagcgg cagacagaag cgtttttccg gcaggcgttc gccgtcaaac caacggctga
     2101 atccccagag cgaatacgga ttgaaacccg tcagcatcaa acgtccggac ggtttcaata
     2161 tccggtgcgc ctcggacagg atttgcgaag gaacaccgcc ttcaagcgta tgcggaaaaa
     2221 gcagcatatc cgcagaaaca tccgccaaag ccatattttc cgccgacatc gacatatctc
     2281 gcggcacaca gacaacatct tcagacaggc tcagccacgg accgcccacc tgaaccgcac
     2341 acattcccga aaaacggtat gaatctagat accgcccgaa gaaatcctgt tccaattttg
     2401 caacataccg ccccatcgcc gtatcttcaa accatgaatc catattgcgt ccgtttcaaa
     2461 cagattgcct gccgatattc tattccaaac aggatttctg tcaaaaaaca catcggccgc
     2521 ccatttccga atccgcataa agttcctgta aaacttgacg ctttttcagt caaacagtac
     2581 catcggacga taaaatatgt ttattccgcc gaatataaat catgtccaaa ctcaaaacca
     2641 tcgctctgac cgcatcaggt ctgtccgttt gtccgggttt cctatacgcc caaaacacct
     2701 catcacacca aatcggtttg gcgattatgc gcttaaactc ttcaatactc gacctgcccc
     2761 cgacaaaaca atatttccaa tccggcagcc tgtggagcga gctgcgccaa ggcttccgga
     2821 tgggcgaagt caatcccgaa ctggtacgcc gccacgaaag caaattcatc gcaagccaca
     2881 gctatttcaa cagggtcatc aaccggagta gaccctatat gtaccatatc gccaacgaag
     2941 tcaaaaaacg caatatgccc gccgaagccg ccctgcttcc cttcatcgaa agcgcgttcg
     3001 tcaccaaagc caaatcacac gtcggcgcat caggattatg gcagtttatg cccgctaccg
     3061 gcaggcatta cggcctggaa aaaacaccgg tttacgacgg caggcacgac gtttacgccg
     3121 ccaccgatgc cgcactcaac tatctgcaat acctctatgg actgttcggc gactggccgc
     3181 ttgcctttgc cgcctacaac tggggtgaag gcaacgtcgg acgcgccatc aaccgcgccc
     3241 gcgcccaagg gctcgaaccg acctacgaaa acctgcgtat gcccaacgaa acgcgcaact
     3301 atgtccccaa gctgctcgcc gtgcgcaaca ttattgccac tccccaatct ttcggcatga
     3361 atatcagcga catagacaac aaaccgtatt ttcaggcagt cgaaccggat cgtccgctcg
     3421 acaacgaagc catcgcccgg cttgccggca tcacgcaaag cgagctgctc gccctaaacc
     3481 ccgcattcaa cgtccccgcg tttatcccca aaagcaaacg caaactgctg cttcctgtcg
     3541 cgtccgtaca aaccttccaa agcaactacc tcaacgccgc acccgacagc ctgttttcat
     3601 gggaagtcta tacgcctgcc gccaaaacca gcctgtccga catctcgacg gcaaccggca
     3661 tgagcattgc cgacatcaaa cgcctcaaca acctgaacgg caaccttgtc aacgcaggac
     3721 gcagcatcct tgtcgccaag aacggcaaaa cccttcagac ggcatcggaa tccgtcgttt
     3781 ccatcgacat cgacaatacg cccgacacct accgttccaa tatgccggca ggcacggtga
     3841 acgtcggcat tgcccgaatc cgacccgccg ccgcacagac agcggacatt accgtcgcac
     3901 ctttgccgca gaaaaccgtc cgtacggaac ccgatcccct tgtccgtatt gccgaacctg
     3961 cccttgcgac agccgcagcg caacctcaaa ccgaaaaaca gaccgccatg ccgtctgaaa
     4021 cccaaaccgc aacactcgcg cagatcatcc cccaaaacga catgcaggcg gcagatgaac
     4081 tcatgcagct tgttgcccga aacaacctgc gccgacaggc tgaagaaacc atctccgccg
     4141 tcatcggcac gcctgacaca gttgccgaac acaacatttc ctcatctccg caacataccg
     4201 ttgccgccga cggcaaacgc cgggcacgtt tggaaacgcg cgtagccaaa gctgccgacg
     4261 gcgaagccga aatctccccg ctccatgcca gcatccaccg cgttgtagaa ggcgacaccc
     4321 tgttcaacat tgccaaacgc tacaacgtca gcgtagccga cctgattgtc gccaacaaca
     4381 tcaaaggcaa caccatccaa aaaggacagg tactccgcct ggcgcaggca gcccctgccc
     4441 aaacccgtat tgaaaaagta tcctacaccg cgcgcaaagg cgacaccttc aaaagtatcg
     4501 ccgcgcgctt caatatccat atcgacgaca tccgccggct caatcccaac ctgaacacca
     4561 tcaatccggg acagagggtc aaactgattg gaagctgatt cggatacggc acatgacagg
     4621 actttctcag tcctgtcttt ttcatcccac atttcccata ccatcatgaa actcatcaaa
     4681 tacctgcaat atcaaggcat aggaagccgc aagcagtgcc aatggctgat tgccggcggt
     4741 tatgttttca tcaacggaac ctgcatggac gacaccgatg cagacatcga ttcctcatct
     4801 gtcgaaacgt tggatattga cggggaagca gtaaccgtcg ttcccgaacc ctatttctac
     4861 atcatgctca acaagcctga agattacgaa acttcgcaca aacccaagca ctaccgcagc
     4921 gtattcagcc tgttccccga caatatgcgg aacatcgata tgcaggcggt cggcaggctg
     4981 gatgcggata cgaccggcgt attgctgatt accaacgacg gcaaactgaa ccacaacctg
     5041 acttcgccga gcagaaaaat tcccaagcta tacgaagtaa cgctcaaaca ccccacagga
     5101 gaaacgctct gcgaaacctt gaaaaacggc gtgctgctcc acgacgaaaa cgaaaccgtt
     5161 tgtgccgccg atgccgtttt ggaaaacccg accaccctgc tgctgaccat taccgaagga
     5221 aaataccacc aagtcaaacg catgatcgcc gccgtcggca accgcgtgca acaccttcat
     5281 cgtcggcgat tcgcacattt ggaaacagaa aacctgaaac ccggcgaatg gaaatttatc
     5341 gattgtccaa aattctgaaa caaaattcca taatttccct atattcaact atatgcttat
     5401 taaataagta gttttacaaa aattaactca aaaaaaaaca gttagcttgc gatataattc
     5461 gcttgtctga gtaacgcctg ttcaagcagg cttatgagta agacgttttc cccgtaatgt
     5521 gttttgccat ctatacttct cccccttgta tagatggttt ttttatcttc gtttactaca
     5581 catactacat atgttactga cgcagcattc ccgatcatat gacatatgaa attttatttc
     5641 accgtcccag tgtagaaaaa taaacgattc atctatctat aaaatctgat tcaatccttg
     5701 ttgatttatg caaatcagaa atatccacta taaaatataa ctctattagt gaaaataact
     5761 acacacttaa aaaacaatca gtcagttcct gttaaaaaac gcgtgtagaa tttccgcttt
     5821 atctcaatcg gacacggttt caatatgtct tccccttcaa ataccaatcg tcaaacctga
     5881 tccagccgat taacctatat cctgaccgtt gccggcgcga ctgtcggttt cggcgcgacg
     5941 tggcgtttcc cgtatttggt cggtgaaaac ggtggtggcg cgtatgtgtt tttattctgt
     6001 atcgcgatgc tggttatcgg cattccgatg attttggtgg aaaatgtcat cggacggcgc
     6061 aaaggcgtga acgcgctgga tgcgttcggc ggtccgatga acggcaaacc cattgctaaa
     6121 atttggaaac tggtcggctg gatggggctg ctcggcgcgt tcggcatcat ggcttattac
     6181 atggcactcg gcggctgggt aatcagctat atcgttaata ttattggagg aaatttgaat
     6241 atttccagcc ccatcgacgg tgtggttaca aaaggcttct ttgccgaaca cattgaaaca
     6301 gcccttggga aattgcgttt tatacgctgc tttttgtcgc cgtgaaccaa tggattttgg
     6361 tcaaaggcgt tatcggcggc attgaaaaag cggcaaaata gctgatgccg ctgctgtttt
     6421 tgttcctaat cgcgatggtc gtccgcaacg ttacccttcc gggcgcaatg gaaggggttg
     6481 ctttctatct gaaacctgat ttcagcaaga ttaccgccga actgttcgtc ttcgttttgg
     6541 ggcaggtatt ttttgccctg agcctgggtt tcggcgtgat gattaccttg tccagctatt
     6601 tggataaaaa cgaaaatcta gttcagacgg cagttatcac ggcaattacc aataccatca
     6661 tcgccatact tgcgggcttt atgattttcc cgtcgctctt cagcttcggc gttgcccccg
     6721 attccggccc gactttggtg ttccaaagct tgccgattgt gttctcacat atgtgggcgg
     6781 gatctgtgtt cgccgtgatt ttcttctcgc tgctcctgat tgccgcgttg acaacttcgc
     6841 tgaccattta tgaagtgttg attacgacca ttcaggaaaa aaccaaaatc cgccgtaccg
     6901 ccgcgattac gattgtattg gctgccatct tcattttcgg caacatcccg tccattttga
     6961 gctacggccc ttggaaagat gtttccatat ttggcaaaaa tatttttgac gcttttgact
     7021 acatcagcgg caacatcttg tttatgctga ccgcgctcgg ttccgcgctg tttgtcggtt
     7081 ttgtgatgaa ggacgaagcg aaggaagaat tgctttataa aggcaaccat acgacggtca
     7141 atatttggtt tgcctatgtg aaatacctcg tgccgttggt gattctgctg atttttatca
     7201 gcaacctgtt ctaatccgca gcaatcaatg ccgtctgaag gtcatacctc tttcagacgg
     7261 cattgcattg atgcccgcca caatacccgc aacgccggaa tccgaaccgg cttgccggct
     7321 tctgtcggat gtttccgggc aggcggcgtt ccgtctgctt agacaatcgt cctttaaaac
     7381 aggtagaatc cgccccaacg ggaaacacat ccttcagacg gcaaaaccca taccccaaac
     7441 catcaggaat cccccttatg aacagacaaa aagtcatcgc catcgacggc ccgggcgcat
     7501 cgggcaaagg cacggttgcc gcccgcgttg ccgccgcatt gggatacgat tatctcgata
     7561 ccggcgcact ctaccgcctg actgccctat atgcacaaaa acaaggcgtg ggatggcacg
     7621 atgaagaaaa cgtttccgaa ctggcaaaaa aactgcccgc cgtattttca ggcagccgca
     7681 tcctgctcgg cggcgaagac gtttcagacg gcatccggac agaagccatc ggcatgggcg
     7741 catccgcagt cgcacagttg cctaaagtcc gcgccgccct gctgcaacgc caacgcgatt
     7801 ttctgaccga aaaaggactg gttgccgacg gacgggacac cggatcggtc gtcttccccc
     7861 aagccgaact taaaatcttc ctgacggcag aatccaaaat ccgtgccgaa cgccgcgcca
     7921 aacaaatcgg catcccctgc gaaggtttgg cattcgagcg catcctgtcc gacatcgaag
     7981 ccagagacga ggcagaccga aaccgcaaag ttgcccccct gaaacaacag cccgatgccc
     8041 tgcttttgga cacaagccgc ctgactatag aagaaactgt aaaaaaagtg cttgattggt
     8101 atcgtgaagt ttaaattttc aggtataatc gcacaaatta cgtttcagac ggcataaaaa
     8161 tcccccatat gccgtctgaa accttatgta cccgtctgcc ctgccaagga cggcagatat
     8221 ccaccaaccc accccgcacc ccttggcggt gtaccgaaaa gagttatata tgtctatgga
     8281 aaattttgct cagctgttgg aagaaagctt taccctgcaa gaaatgaacc cgggtgaggt
     8341 gattaccgct gaagtagtgg caatcgacca aaacttcgtt accgtaaacg caggtctgaa
     8401 atcagaatcc ctgattgatg tagctgaatt caaaaacgct caaggcgaaa ttgaagttaa
     8461 agtcggcgac ttcgttaccg ttaccatcga atccgtcgaa aacggcttcg gcgaaaccaa
     8521 actgtcccgc gaaaaagcca aacgtgcagc cgattggatt gccctggaag aagccatgga
     8581 aaacggcgac atcctgtccg gcatcatcaa cggaaaagtc aaaggcggcc tgaccgttat
     8641 gattagcagc atccgcgcat tcctgccggg ttctttggtc gacgtacgtc ctgtaaaaga
     8701 cacttctcac ttcgaaggca aagagatcga attcaaagtg atcaaactgg acaaaaaacg
     8761 caacaacgtc gttgtttccc gccgcgccgt tctggaagcc actttgggtg aagaacgcaa
     8821 agccctgctg gaaaacctgc aagaaggctc cgtcatcaaa ggcatcgtta aaaacattac
     8881 cgattacggt gcattcgttg acttgggcgg catcgacggt ctgttgcaca tcaccgattt
     8941 ggcatggcgg cgcgtgaaac acccgagtga agtcttggaa gtcggtcagg aagttgaagc
     9001 caaagtattg aaattcgacc aagaaaaaca acgcgtttcc ttgggtatga aacaactggg
     9061 cgaagatcct tggagcggtc tgacccgccg ttatcctcaa ggcacccgcc tgttcggcaa
     9121 agtatccaac ctgaccgact acggcgcatt cgtcgaaatc gaacaaggca tcgaaggttt
     9181 ggtacacgtc tccgaaatgg actggaccaa caaaaacgta cacccgagca aagtcgtaca
     9241 actgggcgac gaagtcgaag tcatgatttt ggaaatcgac gaaggccgcc gccgtatctc
     9301 tttgggtatg aaacaatgcc aagccaatcc ttgggaagaa tttgccgcca accacaacaa
     9361 aggcgacaaa atctccggcg cggttaaatc cattaccgat ttcggcgtat tcgtcggcct
     9421 gcccggcggc atcgacggtt tggttcacct gtccgacctg tcctggaccg aatccggcga
     9481 agaagccgta cgcaaataca aaaaaggcga agaagtcgaa gccgtcgtat tggcaatcga
     9541 cgtggaaaaa gaacgcatct ccttgggtat caaacaactg gaaggcgatc cgttcggcaa
     9601 cttcatcagc gtgaacgaca aaggttcttt ggttaaaggt tccgtgaaat ctgttgacgc
     9661 caaaggtgct gttatcgccc tgtctgacga agtagaaggc tacctgcctg cttccgaatt
     9721 tgcagccgac cgcgttgaag atttgaccac caaactgaaa gaaggcgacg aagttgaagc
     9781 cgtcatcgtt accgttgacc gcaaaaaccg cagcatcaaa ctttccgtta aagccaaaga
     9841 tgccaaagaa agccgcgaag cactgaactc cgtcaatgcc gccgccaatg cgaatgccgg
     9901 caccaccagc ttgggcgacc tgctgaaagc caaactctcc ggcgaacaag aataaggttg
     9961 cagacatgac aaagtctgag ttaatggttc gtttggcaga agtgtttgcc gccaaaaacg
    10021 gcacgcatct tctggcaaaa gacgtagagt acagcgtaaa agtcttggtt gacaccatga
    10081 ctagatcgct tgcccgaggt caacgcatcg aaatccgcgg tttcggcagc ttcgatttga
    10141 accatcgtcc tgcccgcatc ggtcgcaatc ccaaaaccgg cgagcgtgtg gaagtacctg
    10201 aaaaacatgt accccacttc aagcccggta aagaattgcg cgagcgggtc gacttggctt
    10261 taaaagaaaa tgccaattaa accttagcat caaaacgccg ctgttacgcg gcgttttttc
    10321 tgtggtttaa cttcatccgc tgcttcaata ccttgagcca agcaagcaac ggattagagc
    10381 gtggattttt tatagtggat taacaaaaac cagtacggcg ttgcctcgcc ttagctcaaa
    10441 gagaacaatt ctctaaggtg ctgaagcacc aagtgaatcg attccgtact atttgcactg
    10501 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctatatcatt gcttacaatc
    10561 cgctttttaa acaacaaatt tttgatttct attacgaaca ggacaaaaat cctgcttatt
    10621 gcactaaaac taagccgttt caggaatttg cggcaaattt acggctttta ccgaacctaa
    10681 tgctttcgct ttttggtaaa acgccaattt gtattcaagc aaatctaaat agcgttttaa
    10741 ttcggcaatt tgacacttca cattttctat ttgattttca aacaaggaaa ggcgttcttc
    10801 aatggtatcg tcgccaatga cggtacattc cgcaaagcgt ttgatgtctt ttaagctcat
    10861 tcccgtattt ttcaagcatt gcaataagcc caaccattgc aaatcgttat cggtaaaaca
    10921 gcggttaccg tattcatcac gtccgatatt gggcaacaaa ccttctttgt cgtaaaaacg
    10981 tagggtgtgg gcggagatgc ctattttttc ggcggctttg gcagtagtat aagtcatttt
    11041 ccctccttct aaacaaaaac agtaaaaaac acttgcttta gagttaactc taaagtgtaa
    11101 actgttgcta tgttgctcag gcaaggcaac tttgtcaatg aattaagagg aaagacaatg
    11161 gaaatgaaac aagccgattc aaccatcaaa tctcgtgcgg cggtggcatt cgcccctaac
    11221 caacccttac aaattgtgga aatcgacgta gaaatgccgc gtaaaggcga ggtgttaatc
    11281 cgcaataccc acactggcgt gtgccatact gatgcgttta cgttatcagg aagcgatcct
    11341 gaaggcgtat tccctgtggt gcttggacac gaaggtgcgg gtgtggtcgt tgctgtgggc
    11401 gaaggtgtgt caagcgtaaa accgggtgat cacgtgattc cgctttacac cgccgaatgt
    11461 ggcgaatgtg agttttgttg ttcaggtaaa accaacttgt gcgtctcagt gcgtgataca
    11521 caaggtaaag gcttaatgcc ggacggcacg acgcgttttt cttatcaagg tcagccgatt
    11581 tatcactata tgggctgttc gactttcagt gaatactccg ttgttgccga agtttcactg
    11641 gcgaaaatca accctgaagc caaccatgaa caagtatgtt tgctcggctg cggcgttacc
    11701 acaggtattg gtgcggtaca taatacggca aaagtgcaag aaggcgactc tgttgccgtg
    11761 tttggcttag gcgcgattgg tttggcggtg gtgcaaggtg cgcgtcaagc caaagccggc
    11821 cgcattatcg ccattgatac caatccatca aaatttgagt tggcaaaaca gtttggtgca
    11881 acggattgtt tgaacccgaa cgattacgat aaaccgatca aagatgtgtt gttagacatt
    11941 aataaatggg gcattgacca tacctttgaa tgtatcggca acgtaaacgt aatgcgtcag
    12001 gcattagaaa gtgcacatcg tggttggggt caatccatta tcatcggcgt agcaggtgca
    12061 ggacaagaaa tttcaacgcg tccgttccag ttggtaacag gtcgtgtttg gaaaggttca
    12121 gcatttggcg gtgtgaaagg tcgctctgaa ctgccgaaaa tggtggaaga ttcaatgaaa
    12181 ggcgacattg agttagaacc gtttgtaacc cacacaatga cactcgatca aatcaataaa
    12241 gcctttgact taatgcacga aggtaaatcg atccgcgccg ttattcacta ctaaggtatg
    12301 cgatgaaact gattgaacaa catcaaattt ttggcggttc gcaacaagtt tgggcgcatc
    12361 atgcccaaac gctgcaatgc gaaatgaaat ttgccgtcta tttgccaaat aatccagaaa
    12421 atcgaccgct tggtgtgatt tattggcttt ccggcttgac gtgtacggaa caaaatttca
    12481 ttaccaaatc aggctttcag cgttatgcgg cagaacatca agtaattgtg gtggcctccg
    12541 atagcagccc tcgcggagag caagtgccga acgatgatgc ttacgattta ggacagggtg
    12601 caggctttta tttgaatgcg accgaacagc cttgggcggc gaattatcaa atgtatgatt
    12661 acattttgaa cgagctgccc cgtctgattg agaaacactt tcctaccaac ggcaaacgtt
    12721 ccattatggg gcattcaatg ggcggacacg gcgcattggt attggcgctg cggaatcagg
    12781 aacgttatca aagtgtttct gccttttcgc ctattttatc gccaagcctc gtgccgtggg
    12841 gagaaaaagc ctttactgct tatttaggga aagaccgtga aaaatggcag caatatgatg
    12901 cgaactcact cattcaacaa ggctataaag tgcaaggtat gcgcatcgat caaggcttgg
    12961 aagatgagtt tttgccgaca caattgcgta ccgaagattt tatcgaaacc tgccgtgcgg
    13021 caaaccagcc ggtcgatgtg cgtttccata aaggctacga tcacagctat tacttcatcg
    13081 ccagttttat tggcgagcat attgcttatc acgccgcgtt tttgaagtaa accaaagagc
    13141 gttcagtgtt caaagcagtt ttgggatagc cggcacgagg gcggtaagaa gtgccggcat
    13201 aaacgtatgc cgtctgagcc ggaaggagcc gactctacgg a
//
LOCUS       DAXIFS010000039        12839 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.039, whole genome shotgun sequence.
ACCESSION   DAXIFS010000039 DAXIFS010000000
VERSION     DAXIFS010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12839
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.039"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(13..1323)
                     /locus_tag="ACFOCA_000810"
     CDS             complement(13..1323)
                     /locus_tag="ACFOCA_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFC6987553.1"
                     /translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
                     LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
                     PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
                     IVANPATLVGLGDIHQPSALLALFGFAMVVVLGHFRVQGAIIITILTITVIASLMGLN
                     EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
                     VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
                     ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
                     IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
     gene            complement(1462..2640)
                     /gene="ftsZ"
                     /locus_tag="ACFOCA_000811"
     CDS             complement(1462..2640)
                     /gene="ftsZ"
                     /locus_tag="ACFOCA_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFC6987554.1"
                     /translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
                     SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
                     FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
                     DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
                     TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
                     MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
                     VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
                     "
     gene            complement(2759..4003)
                     /gene="ftsA"
                     /locus_tag="ACFOCA_000812"
     CDS             complement(2759..4003)
                     /gene="ftsA"
                     /locus_tag="ACFOCA_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFC6987555.1"
                     /translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSRGL
                     RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
                     TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
                     GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
                     YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
                     GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
                     GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
                     VQEREGGGGLLARLKRWIENSF"
     gene            complement(4089..4817)
                     /locus_tag="ACFOCA_000813"
     CDS             complement(4089..4817)
                     /locus_tag="ACFOCA_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HFC6987556.1"
                     /translation="MWDNAEAMERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSL
                     KGNLVYSDKKALGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVV
                     LTERKPVARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAK
                     QGLGIKEMTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYV
                     DMRYKDGFSVRYASDGLPEKESEE"
     gene            complement(4807..5721)
                     /locus_tag="ACFOCA_000814"
     CDS             complement(4807..5721)
                     /locus_tag="ACFOCA_000814"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFC6987557.1"
                     /translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
                     KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
                     KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
                     VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRNDTIY
                     QCPSEDLTEAEESLMRELAVRGAQAIGAESCVRVDFLKDTDGKLYLLEINTLPGMTSH
                     SLVPKSAAVTGVGFADLCIEILKTAHVG"
     gene            complement(5834..7243)
                     /gene="murC"
                     /locus_tag="ACFOCA_000815"
     CDS             complement(5834..7243)
                     /gene="murC"
                     /locus_tag="ACFOCA_000815"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFC6987558.1"
                     /translation="MMKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAAT
                     EHLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAEL
                     MRFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVA
                     EADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI
                     DSEHVRAILPKVSKPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVV
                     LNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL
                     LVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV
                     LTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM
                     GAGSINRVPAALLELSKQI"
     gene            complement(7397..8464)
                     /gene="murG"
                     /locus_tag="ACFOCA_000816"
     CDS             complement(7397..8464)
                     /gene="murG"
                     /locus_tag="ACFOCA_000816"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFC6987559.1"
                     /translation="MGGKTFMLMAGGTGGHIFPALAVADSLRTRGHHVIWLGSKDSME
                     ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPVTLYQTVREAQRIIRKHRVECVIGFGG
                     FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
                     VRADISNLPVPAERFQGREGRLKILVVGGSLGADVLNKTVPQALALLPDDARPQMYHQ
                     SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
                     LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGSLNREKCLKWAENA
                     RTLALPHSADDVAEAAIACAA"
     gene            complement(8468..9793)
                     /locus_tag="ACFOCA_000817"
     CDS             complement(8468..9793)
                     /locus_tag="ACFOCA_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFC6987560.1"
                     /translation="MQTDWQVVFLKISEVLVKVGDGVHTLLLDRPIVRDGRKFDAPLL
                     WMVVLMTAFSLLMIYSASVYLASKEGGDQFFYLTRQAGFVVAGLIASGLLWFLCRMRT
                     WRRLVPWIFALSGLLLVVVLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLF
                     TRREEVLRSMESLGWQSIWRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFG
                     LVLIMVQPDFGSFVVITVIAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQR
                     VVAFLDPWKDPQGAGYQLTHSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIA
                     EEFGFFGMCVLIFCYGWLVVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGV
                     NIGALPTKGLTLPLMSYGGSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
     gene            complement(9919..11256)
                     /gene="murD"
                     /locus_tag="ACFOCA_000818"
     CDS             complement(9919..11256)
                     /gene="murD"
                     /locus_tag="ACFOCA_000818"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFC6987561.1"
                     /translation="MTLENKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
                     QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
                     DIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKK
                     ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQV
                     LNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIPLQGLHN
                     AANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGKKNGVVFIDDSKGTNVGAT
                     AAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLN
                     MTDCATLEEAVQTAYAQAEACDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
     gene            complement(11346..11618)
                     /locus_tag="ACFOCA_000819"
     CDS             complement(11346..11618)
                     /locus_tag="ACFOCA_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HFC6987562.1"
                     /translation="MKQTVKWLAAALIALGLNQAVWADDVSDFRENLQAAAQGNAAAQ
                     YNLGAMYYKGRGVRQDLVLAQEWFGKACQNGDQDGCDIYQRLKAGY"
     gene            complement(11733..12815)
                     /gene="mraY"
                     /locus_tag="ACFOCA_000820"
     CDS             complement(11733..12815)
                     /gene="mraY"
                     /locus_tag="ACFOCA_000820"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFC6987563.1"
                     /translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
                     RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
                     VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIASLALFYLAANSANNILI
                     VPFFKQIALPLGVVGFLVLSYLTIVGTSNAVNLTDGLDGLATFPVVLVAAGLAIFAYA
                     SGHSQFAQYLQLPYVAGANEVVIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
                     LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
                     ETQVVVRFWIITIVLVLIGLSTLKIR"
BASE COUNT         3028 a         3678 c         3266 g         2867 t
ORIGIN      
        1 atatcgaatc aatcagccca aataccagaa tttcagtgcc cacaatacgg caacaatcca
       61 taccataggc ggaacgtctt tggtgcggcg gcataaaagt ttaaccacgg catagctgat
      121 gaagccgaag gcgatgccgt ctgcaatcga ataggtaaac ggcatgaaga caatggtcag
      181 gaatgcgggt gcggcttccg tcatatcgtc ccaatcaata tccctcgcac tgcggagcat
      241 ctgcgtgccg acataaagca gggcgggcgc ggtggcaaaa gcgggaacac ttttcgccaa
      301 aggtgaaaac atcaggcagg cgagcatcaa tacgccgact gtaaccgccg tcaggccggt
      361 ccgtccgcct gccgatacgc ccgccgcgct ttccacataa ggcgtggtgg aagaagtacc
      421 caaagccgca cctgccacaa tggcggtaga gtctgcaagc agtgcgcgtt tcaggcgggg
      481 cagcttaccg tccaccagca gcccggcacg gtgggatatg ccgaccagcg ttccggtact
      541 gtcaaataga tcgaccaaga agaagacgaa aatcacactg accatgctga cggtaaacag
      601 gccttcaaaa tccatctgca taaaagtcgg cgcaatgctc ggtacttcgc cgatgatgcc
      661 gtgaaattca ttcaaaccca tcaggctggc aatgacggta atggtcaaga tggtgatgat
      721 gattgcgcct tgaacgcgga aatgtcccaa tacgaccacc atagcaaaac cgaacagtgc
      781 caacaacgcg gacggctgat gaatatcgcc caaaccgacc aaggttgccg gattggcaac
      841 gataatgcct gcgcctttca gggaaatcag tgccaaaaac aaaccgatac cggcagcaat
      901 cgacattttc aaacccatag gcagtgcgtt gaccagcatt tccctgactt taaaaaagct
      961 gaacaggata aaaatcagac cggagatgaa caccgcaccc aacgcaacct gccaaggcac
     1021 gcccataccc ttaacgacgg caaaggtgaa ataggcattc agccccatcc ccggtgcgag
     1081 tgcaatcgga tagttgccga caaaacccat aacaaaacag ccgatggcag acgcgataca
     1141 ggtagcgacg aataccgccc ccatatccat gccggtctcg cccaaaatca gagggttgac
     1201 gataacgatg tagcacatcg tcaaaaaagt tgtcaaaccc gccatcaact cggtacgcac
     1261 cgtcgtaccg tttgccttca gcttaaaaat cccgtccaac agtgtttgtt ttgaagtgtc
     1321 catatctgaa agtctgtatc aagtggaaaa atctgaatcc gccgaccgca aaccgtacga
     1381 aattgcaaca tcttgaaaaa catacctccc aaaccggaca aaccgattcg ggaggcagca
     1441 ggtttacggg caaacagcac attatttgtc tgaattgtgt tgacgacgca aaatcgcagg
     1501 gatttcaaag tcgtcaagta cggactgatt gtcgaaatcc gcagcggtaa ggttcatcgt
     1561 gcggataccg cgattggtgc ggatcatacc ttcgacattg tggctttgct cctgtttgga
     1621 cggagcaacc gcttctacct cccttgccgg aacaaaatcg accgcgcctt tttctttcag
     1681 accggtagcg ataatggtaa tccggatggc atcttcgctc atggtctcgt cttcagccgc
     1741 accgaatttg cattccaaat cgggatgcgc gctttggttg acgattttca tgacttcgga
     1801 caactcggac attttcaagc aacccggagc agtcgtaata ttgaccagca caccgcgcgc
     1861 tccgtccaag gttacatcgt ccagcagcgg actggaaatg gcctggtcgg tcgccatacg
     1921 cgcacggtcg ataccttggg cataacccga acccatcata gcgataccgc ggttgctcat
     1981 cacggttttc acgtcggcaa agtcgaggtt gatgatttcg ctcgggcaag ttaccacttc
     2041 ggaaatgcct gcgaccgcat cgcgcaatac attgtcggcg gcacggaagg cttcgcgcat
     2101 cgttacgtct tcacccaatg cagtcatcag tttgtcgttc gggatgatga tcagcgaatc
     2161 gacgtgttct ttcaactgtt ccaaccctgc ctgtgcgaca tggacgcgct taccttcata
     2221 tgcgaacggt cgggtaacca cggcaacggt cagaatgccc aaagacttgg caatctcagc
     2281 aacaaccggc gcggaaccgg taccggtacc gccgcccata ccggtcgtga taaacagcat
     2341 attcgcaccg cgaatggctt cttcaatggc ttcccggtct tcctgggctg ccgcacggcc
     2401 gatatcggga ttcgcgcccg cgcccaaacc gcgtgtcaga ttcgtaccca actggattct
     2461 cttcgccgca tggttttttg ccaaagactg cgcatccgta ttggcactga taaactccac
     2521 accgcgcaca ttgttggcaa ccatgttatt gattgcattg caaccgccgc cgcccaagcc
     2581 gattacttta atcaccgcag ggctgactgc cgattctgcc acgtcgtaaa caaattccat
     2641 tcaaaaactc ctgctcgccc cattcagagg acggtttaaa taaattatta ttcattatat
     2701 aagaagtatc ttgctgctgg caaaatactt ctcacctgtc aaacggcaat ccacctgttc
     2761 agaagctgtt ttcaatccac cgtttcaatc ttgccaacaa accgccgccc ccttccctct
     2821 cttgcactgc accgttttcc ggctgcggca agtttccttc cagcttgcat gctgcatgaa
     2881 gcagcccgat ggcggtagaa aagcgcggtg tgcggacgcg gtcggacaaa ccgcccattt
     2941 cttggggcgc accggtgcgt acaggcaaat cgaagatttt ttcggcaaat tccacaatcc
     3001 cggtcatcat ggacacaccg ccggtcagaa cgatacccgc attcagcact tctttgggga
     3061 aacccgattt ttgcagctcg cccagcacta cgccaaaaat ctcctgaata cgtgcgctga
     3121 tgattgctgc caaaacctta ctggaaacct gacgcgatgt ccggtcaccc acgcccggaa
     3181 cttcaatcat ctcacccaag ccttccgtat cgcatgatgc cacgccataa tggattttaa
     3241 tgtactcggc ggcatcgaga ggtgttctca acgatttgga caaatctttg gtaatcagat
     3301 taccaccggc cggaatgacg gacgtatggc ggatggcacc gttcatataa acggcaatat
     3361 cggtcgttcc gccaccaatg tcgatgacgc atacgccgag gtctttttca tcttcagtca
     3421 gcaccgcctg cccgcttgcc aacggctgaa gcatgatctg atcgcttttc aaaccgcacc
     3481 gctcgataca tttttggaca ttctgcactg ccgtacttgc accggtaatg atgtgcaccc
     3541 gcgtatccag acgcacaccg ctcataccga tgggctccct cacgccaagt tgggtgtcga
     3601 taatgtagtc ttgaaccacg gcatcgagaa ttttttgatc gggcgggata ttgattgcct
     3661 ttgccgtttc aatggcgcgg tcgatgtctg cctgcgtgac ttccccgtct ttaattttaa
     3721 ccacaccttg cgaattgaga ctgcggatgt ggttgcctgc gatacctgtg gtaacgtggg
     3781 taattttggt atccgccatc agctcggcat cattgaccgc ctgcctgatg gcttggacgg
     3841 tggcatcgat attggttacc atgcccgcgc gcaagccccg tgaaggagcc tgccccaaac
     3901 cgacgatgtt gattttgtcg tcatcttgaa cttccccgat cagtgcgagg actttagacg
     3961 taccgatatc cagtacgctg atgtatcttt gctgctgttc cattgttcgt ctgctcttaa
     4021 aactgattga aatttgcgtc gcaccgtttc agacggcacg gtcgtaatct gtccgatacc
     4081 tgttcccact attcttcgga ttctttttcg ggtaaaccgt cggaagcata gcggactgaa
     4141 aatccgtcct tatacctcat atccacatag gataaccgat ttttattttt acgcaacaga
     4201 tgctgccacg cttcggtaaa aagccggagg cgtttcatct cgttttcccg tccgagcctg
     4261 acggtgatgc cgttgtccaa aacgacaatc cacgccgaac gtgccgtata ggtcatctct
     4321 ttgatgccca aaccctgttt tgccaaaaca gtcgaaaatt cgtcataacg gcggagcatt
     4381 tcggcagacg ttccttccgc gcctctgaat accggcattc cgggtctgtc caagcgggct
     4441 tcaaaaacat tgccttcgcc gtccaccaag gcatggtcgc cccaacgcgc gaccggcttg
     4501 cgctcggtca ggacgacctc aaccgtgtcg ggaaaacggc ggcgcaccat gaccgacgca
     4561 atccacggat accggcggta ggcctcctgt gcgccattga tgtccgtcct caaaatattc
     4621 ccatggatgt attctttcgc caaactgccc aatgccttct tatcggaata aaccaggttg
     4681 cccttcagcg acacctgctt gacgggcaga tgattcgaat tgtaaaacca aaccagcccg
     4741 gacgcagcaa gcagcatcgc catcatgaca agcagccagc gcgtcagccg ttccatcgct
     4801 tcggcattat cccacatgtg cggtcttcaa aatttcaata cataaatcgg caaaacccac
     4861 gcccgtaacg gcagcggatt tcggtactaa actatggctc gtcataccgg gcagggtgtt
     4921 gatttccaac agatagagtt tgccgtcggt atctttgagg aaatcgacgc gcacgcagct
     4981 ttccgcaccg attgcctgcg cgccgcgaac cgccagttcg cgcatcaggc tttcttcggc
     5041 ttcggtcaga tcttccgaag gacattgata aatggtgtcg ttgcggttgt acttggcttc
     5101 gtagtcataa aactcggtcg cggggatgat gtgtatgccg ggcaggcctt tgccgttcaa
     5161 gacggggcag gaatattcgc cgccgccgat aaaccgttcg gcaatgattt cgccctgaag
     5221 gtgtttcaat tcttcgtaaa cgcttttcag acggcctttt cctttgactt ttaccacgcc
     5281 tacgctgctg ccttcggccg ccggtttcac aaacatcggc aggcccaatt tttcttcgac
     5341 ggcatcgaaa tcagtgtcgt cgtgcaggac ggcgaactcg ggaacgggca gtcccaatgc
     5401 ctgccaaatc agtttgcagc ggtatttgtc catgccgatg gcggatgcgg cgacaccgct
     5461 gccggtatag ggaatgccca acagttccaa tgcaccctga accgccccgt cttcgccgta
     5521 agtaccgtga aggatgttga atgccgtctg aaaaccttgt gccttcaatt cagacaatgg
     5581 ggtttcttta ggatcgaagg catatgcgtc tatgcctttg ctttttaaag cattcaaaat
     5641 ggcggtgccg ctgtccagcg agatttctcg ttcgctggaa aaaccgccca tcaatacggc
     5701 cactttgcca aaattctgca ttgtttttgt tctttcctga ttgctttatg cttgttgcca
     5761 gaggtcgtct gaaacctgat ttgcggtttc agacgacctt tatatgatgt tccgtctgtc
     5821 aggcgggtgt gcctcaaatc tgtttcgaca attccagcag cgcggcgggg acgcggttga
     5881 tgcttcccgc acccatattc aacacgatgt cgccgtcctg caaaacgttc aacagcattt
     5941 cgggcagatc ggcaacgttt tcgcagtaaa tcggctcgag tttgcccaac acgcggatgg
     6001 cgcgggcaag agcgcgggaa tcggcggcgg caatcggctc ttcaccggcg gcataaactt
     6061 cggtcagcac cagcgcgtca acggtattga ggactttggt aaagtcttca aacaaatcgc
     6121 gcgtgcgggt atagcggtgc ggctggaagg cgagtaccaa acgtttttcc ggatacgcgc
     6181 cgcgtgcggc ggcaagggtc gccgccattt cgacggggtg gtgtccgtag tcgtccacca
     6241 agagcgcggt cccgccgttt ggcaacttga tgtcgccgta tttttggaag cggcggccga
     6301 caccttcaaa gccgagcaag cctttttgga tcgcttcaac cgatgcgccg acttccagcg
     6361 ccacgccgat ggctgccaat gcgttcagca cgttgtgtct gccgggcata ttcagcacga
     6421 cttcaaacga cccctgctca tgtcctttca tttgaacatg gacggtgaat ttcatttgcg
     6481 cgccgacgtt ttcgatgtcg gtggcgtaga tgtcggcggt atcgtccaaa ccgtaagtag
     6541 cataaggttt gctcactttg ggcaaaatcg cgcggacgtg ttcgctgtca atacacaaaa
     6601 aggctttgcc gtagaagggc atacggtgga tgaaatcgat aaacgcctga tgcagttttt
     6661 cgacgctgtg cccgtaggta tccatatggt cttcgtcgat attggtaacg acggacataa
     6721 tcggtgtcag gtgcagaaag gatgcatccg actcgtcggc ttcggcaacg atgtattcgc
     6781 ctttgcccaa gcgggcgttg gtgcctgcgg cgttgagttt gccgccgata acgaaagtcg
     6841 ggtcaagtcc tgccgcgccg aggatggagg cggtcaggct ggtggtcgtg gttttgccgt
     6901 gcgtgccggc aatggcgatg ccgtcacgga agcgcatcaa ctccgccaac atcagggcgc
     6961 gcggaataac gggaatttgc tgctccaacg cagcgacaac ttcgggattt tcttttttga
     7021 cggcggtaga ggtaacgacg acatccgcac cgttaacgtg ttctgcggta tggccgggat
     7081 aaacttgaat gcccaggctg cccaaatgct cggtagcggc atttcgcgcc tgatccgaac
     7141 cggaaacttt aaaacccaaa ttgtgcaaga cttcggcgat accgctcatg ccgacgccgc
     7201 cgataccgac aaaatggatg ttggtcactc gatttttcat cataatgttg cgttccggtg
     7261 gatttcgatg cgtaaaggcg ttattttaaa gggctgaccg tttgcgcgcc atagttttct
     7321 gacaaatata tagcggattg aaataaaaaa catccatgcc gtctgaacgg cttttcagac
     7381 ggcatggttc ggcagtttac gccgcacacg caatcgcggc ttcggcaacg tcgtccgcgc
     7441 tgtgcggcaa tgccaaagta cgggcgtttt ctgcccattt gagacatttt tcgcggttca
     7501 ggctgccgag gatttcggcg agtttttccg ccgtcaactg ggtttgcggc aacagcagtc
     7561 ctgcttctgc ctgcaccata aaacgcgcgt tggcggtttg gtgatcgtca accgcgtggg
     7621 ggtacggaac gagcaacgca cccaatcccg ccgccgtcaa ctcggcaatc gtcagcgcgc
     7681 cggcacggca aatcaccaaa tcggcatcgc ggtaggcgga caccatgtcg gtaataaatt
     7741 ccacgcattc ggctttcacg cccagcgcgt cgtaatccgc ctgcaagctg cccagcttgc
     7801 cccgtcccga ttggtggtac atctgcggac gcgcatcgtc gggcagcaaa gccaatgcct
     7861 gcggtacggt tttgttcaaa acgtccgcgc ccaaactgcc gccgaccacc aaaattttca
     7921 gacggccttc acgcccttgg aagcgttcgg caggcacggg caggttgcta atatcggcgc
     7981 ggacggggtt gccgaccaag ccgccttcgt ggctgaacgc tttcggaaaa gcgtacaaca
     8041 cccgcttcgc ccagcgcgac aggtggcggt tggacaagcc tgccacggcg ttttgctcgt
     8101 gaatcacaat cggcacgccc aagagtttcg ctgccagacc gccgggaaag gtaacgaagc
     8161 cgccgaagcc gatgacgcac tcgacacggt gtttgcggat aatccgctgc gcttcgcgga
     8221 cggtttgata caaagtaacc ggcagcatca gtttgcgttt gatgccgttg ccgcgcacgc
     8281 ctttaatcgc cagcgtttcc aagcgtatgc cgtattgcgg cacgatacgc tcttccatcg
     8341 aatccttgct gcccagccaa atcacatgat ggccgcgcgt gcgcaatgaa tccgccaccg
     8401 ccagcgcggg gaaaatatgt ccgcccgttc cgcccgccat cagcataaag gttttaccgc
     8461 ccatgattta ctccacccga taaccgcgca ttttccggcg gttttcataa tctatacgca
     8521 acagcagcat catgctgatc agcatgaaaa agactgacga accgccatag gacatcaacg
     8581 gcagcgtcag acctttggtc ggcaaagcac cgatgttcac accgatattg aagaaacttt
     8641 ggataccgat ccaaatgccg atacccgaag cgatataggc gttgaaagtc aaacccaaat
     8701 cgcgcgactg cttgccgatg gaaaacgccc gcaccaccag ccagccgtaa cagaatatca
     8761 gcacgcacat accgaagaaa ccgaattctt cggcgatgat ggcaaaaata aaatcggtat
     8821 gcgcttccgg cagaaagccg cgtttgctca aactcgcacc caaacccata ccgaaccact
     8881 ctccgcgccc gattgccatc agagagtggg taagctggta gccggcaccc tgcgggtctt
     8941 tccacgggtc caaaaatgcc actacccgct gcacacggta gggagcggcg gtaatcatca
     9001 gcaccatccc gcccaagacg ctgcctacca ggacgaaaaa atatttccac ggcaatcctg
     9061 ccaaaaacag cattccaacg gcaatgacgg taatgacgac aaacgaaccg aaatccggct
     9121 gtaccattat cagcaccaaa ccgaacgcca ccagcataat cggcaggatg atcgcccgga
     9181 aacggccgta catttctaat gtttcacgac gtgcctgcgg attggtggcg gacatgatca
     9241 gattggccgt cccccgccaa atcgactgcc aacccaaact ttccatgctg cgcaacactt
     9301 cttcacggcg cgtgaacagg cttgccaaat aaaggatgac cgccagcttg aacagctcgg
     9361 tcggctggaa attcaacgga cccaaaggta tccaacgggt cgcgccattg atttcgcgcc
     9421 cggcaatcaa tacgactacc agcaacaggc cggatagggc aaaaatccac ggcacaagcc
     9481 gccgccatgt cctcatcctg caaagaaacc ataacaaacc gctcgctatc aagccggcaa
     9541 cgacgaaccc cgcctgtctg gtcaaataga aaaactgatc gccgccttct tttgatgcca
     9601 aatacacaga agccgaataa atcatcagca ggctgaacgc cgtcatcagc accaccatcc
     9661 acaaaagcgg cgcgtcgaat ttcctgccgt cgcgcacaat cggcctgtcg agcagcagag
     9721 tgtggacacc gtcgcccact tttaccaata cttccgaaat cttcaaaaaa accacctgcc
     9781 agtctgtttg cacctgccgc aaagggcaaa aatttcagac ggcagacaat gccgtccgaa
     9841 catacgatac atcccaaatc ggtattctaa atctttactt gccgcccaac aatgacggcg
     9901 tttgcatttc agacggcatc acaaagcctt aaacgcttcg ataaacactt ccgaacggtg
     9961 cgcgtagcct ttaaacatat caaaactcgc acaagccggg ctgagcagca cgatatcgca
    10021 cgcttcggct tgggcatatg ccgtctgaac ggcttcttcc aaagtggcgc agtcggtcat
    10081 attcagaccg cagccgtcca aatcgcggcg gatttgcggc gcatcaacgc cgatcaggaa
    10141 cacgcctttt gccttgccgg caagcgcgtc gcgcagaggc gtgaagtcct gccctttgcc
    10201 catgccgcct aaaatcacga agagcggatt ttgcaaaccg gcaatcgcgg cggcggtcgc
    10261 gccgacattc gtgcctttgc tgtcatcaat gaataccacg ccgtttttct tgccgatttt
    10321 ttccacgcgg tgcggcaggc cttggaaggt tttgacgtgt tcaagcaatg cttcgcgcgg
    10381 caaaccgacg gcttcgcaca aagccacggc agccatgacg ttggcggcgt tgtgcaagcc
    10441 ttgcaacgga atgtctttcg tggcaatcaa atcttcattg ccttgtttca ggcggcctgt
    10501 ctcacgttcc aaccaaaaat cggcttcgtg ttccaacgaa aaccatttta cctcgcgccc
    10561 ggcacgtttc atggcacggc agaacgcatc gtccgcattc aaaacctgca caccgtcgcc
    10621 acggaaaatc ttggctttgg tatgcgcgta gtcgagcaag tcgtcgtagc ggtcgagatg
    10681 gtcttcggaa atattcagta ccgtcgccgc cgtcgggcgc aggctttcgg tgttttccag
    10741 ttggaagctg gaaagctcca acacccacac gtccgccttt ttgccttcgc gctgccattc
    10801 cgcctccaaa accggcgtgc cgatattgcc cgcgataacg gtatccagcc cgcacttgat
    10861 acagagatag ccgaccaggc tcgttaccgt ggttttgccg ttgctgccgg taatcgcaat
    10921 taccttgtcg ccccggcggt tcacaatgtc cgccagcaat tcgatgtcgc ccaacacgcg
    10981 tccgccgttt tgcttgaacg cctcaatatc cggctgacgc tcgctgatgc cggggctgag
    11041 tgccaaaata tcgaaaccgt tgtccagcgc atctttcaga cggcctgtgt aaaacaccag
    11101 cccgtcaaac atcttaccga tttgcgacac gcgctcgggc ttcaactccg catcataagc
    11161 ggccacctcc gcgccgtttt tgcgcagata ggcaatcatg gaaatacccg taccgccgag
    11221 tccggcgacg aggatttttt tgttttcaag cgtcattttg gttttgtcct aaaacaaatc
    11281 atattgggca ggtgggggga tgtccgcccc tgcccaagcc gctttcagac ggcatcgcgg
    11341 gctgttcaat aacctgcctt caggcgttgg taaatgtcgc agccgtcttg gtctccgttt
    11401 tgacaagcct taccaaacca ttcttgagcg agcacaaggt cttggcgcac gccgcgtcct
    11461 ttgtaataca ttgcgcccaa attgtattgg gctgctgcat ttccctgtgc tgccgcctgc
    11521 aagttttccc gaaaatccga tacgtcatcc gcccacaccg cttggttcaa gcccaaggca
    11581 atcagggcgg cggcaagcca tttgactgtc tgtttcatgg ttttacttct gttttagtat
    11641 aagccgccgt taacgatagg gctgggcgga ttgtcgccgc aggtttattg cgcgttcaaa
    11701 tgccgtctga aaggtgttca gacggcatag gttcagcgga ttttgagggt actcaaaccg
    11761 atcaacacca agacgatggt aataatccaa aagcggacga cgacttgggt ttctttccag
    11821 cctttttgtt cgtagtggtg atggatgggc gccatcagga agatgcgttt tttggttttc
    11881 ttataccagc caacctgaag cataacggat acggcttcta cgacaaataa tccgcccata
    11941 atgacgagga caaactcttg gcggacgatg acggcgacgg taccgagcgc ggcacccaat
    12001 gccaatgcac cgacatcgcc cataaagact tgcgcgggat aggcgttaaa ccacaagaaa
    12061 ccgaggcacg cgccgcacat ggcggtacag aaaatcacca cttcgtttgc gccggcaacg
    12121 taaggtaatt gcaggtattg ggcaaattgt gagtggccgc tggcataggc gaagatggcg
    12181 aggccggcgg caacgaggac gacggggaag gtcgcaaggc cgtccaagcc gtcggtgagg
    12241 ttgacggcat tggatgtgcc gacgatggtc aggtaagaca acaccaaaaa gccgaccacg
    12301 cccagcggca gggcgatttg tttgaagaac gggacaatca aaatattgtt ggcggaattg
    12361 gcggcaaggt aaaacaatgc caaactggcg ataatggcaa cgcttgactg ccacaccatt
    12421 ttgaatttgg cggacacgcc gttggggtct ttatagacga ctttgcgcca gtcgtcgtaa
    12481 aaaccgagtg cgcccgtggc gagcaatacg cccaagagaa tccagatata cgggtttgcc
    12541 cagttgcccc acaacagggt ggacacggta atggcggtca gaatcagcga accgcccatc
    12601 gtcggcgtgc cgtttttgac gaggtgggtt tgcggaccgt cggtacgcac tgcctgcccg
    12661 catttgagcg cggtcagcct gcgtatcgtc cacgggccga acatcaggga aaacgctaag
    12721 gcggtcaacg ccgccatgac ggcgcggaat gtggtgtatt gaaaaatatt cagaccggtt
    12781 aaccagttgc tgaaatgtgc gagccataaa aacatggggc ttcctttttt tgttttgtc
//
LOCUS       DAXIFS010000040        12632 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.040, whole genome shotgun sequence.
ACCESSION   DAXIFS010000040 DAXIFS010000000
VERSION     DAXIFS010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12632
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.040"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(198..737)
                     /locus_tag="ACFOCA_000821"
     CDS             complement(198..737)
                     /locus_tag="ACFOCA_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6987564.1"
                     /translation="MSQVFKDFDLSSVWESDSWADENYKEAPFTPEILAAVESELGYK
                     LPQSFIELMAVQNGGIFVKNCFPTTQRNSWAKDHVQICEVSGIGFEKEGSLCGETGQK
                     LWMEEWEYPPIGVYFANDPSGGHAMFALDYRECGKDGEPKVVFVEQESDFEIVELAPD
                     FETFIRSLRHEDEFIDEEI"
     gene            complement(972..3179)
                     /gene="uvrD"
                     /locus_tag="ACFOCA_000822"
     CDS             complement(972..3179)
                     /gene="uvrD"
                     /locus_tag="ACFOCA_000822"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HFC6987565.1"
                     /translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
                     TRIAWLLQTGQASVHSIMAVTFTNKAAKEMQTRLGAMIPVDVRAMWLGTFHGLCHRFL
                     RLHHRDAGLPSSFQILDGGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
                     SVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYEMLQSNEILRQHYQNRFN
                     HILVDEFQDTNKLQYAWLKLMAGGNAAVFAVGDDDQSIYRFRGANVGNMTALMEEFHI
                     DAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAR
                     FILDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGLRFYERQEIK
                     HALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAK
                     AAKIAAFVRLIEALRNQVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELV
                     NAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
                     AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
                     LHGQTQFGIVSRFVEEIPPEVLHYLSIKKTAYDSYGNTRQTATFKDKIIDDYKQPQTY
                     AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEEM"
     gene            3363..4010
                     /gene="pxpB"
                     /locus_tag="ACFOCA_000823"
     CDS             3363..4010
                     /gene="pxpB"
                     /locus_tag="ACFOCA_000823"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFC6987566.1"
                     /translation="MRIEITPISESALVCRLNAPSELGKQQKLWAFAAALGQHDRIEE
                     VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
                     VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
                     VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
     gene            4007..4936
                     /locus_tag="ACFOCA_000824"
     CDS             4007..4936
                     /locus_tag="ACFOCA_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFC6987567.1"
                     /translation="MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILL
                     GNDEGTAAIEIALGGIMLVFERDTPFCLTGAVYQAELDGEPVYSYWRYTARKGQTLKM
                     VRAVQGMYGYVCVAGGFDVPEVMGSRSTDLKAGFGGHQGRMLQKGDYLPIGKGAQELS
                     KVGIAPIPFTDTVHLVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLS
                     QPLEMLSHAVQAGTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSK
                     VKFKIIGLKEATALRRKNQAYLNQIRRITHEAG"
     gene            4923..5660
                     /gene="pxpA"
                     /locus_tag="ACFOCA_000825"
     CDS             4923..5660
                     /gene="pxpA"
                     /locus_tag="ACFOCA_000825"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HFC6987568.1"
                     /translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
                     LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
                     YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
                     FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICL
                     HGDGPHAVVFAEKIRQELLAAGIKVSA"
     gene            5789..6982
                     /locus_tag="ACFOCA_000826"
     CDS             5789..6982
                     /locus_tag="ACFOCA_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6987569.1"
                     /translation="MSDQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
                     VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIVMGGLAFNIGNV
                     GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
                     WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
                     VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
                     IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
                     VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
                     GGLFG"
     gene            7090..7782
                     /locus_tag="ACFOCA_000827"
     CDS             7090..7782
                     /locus_tag="ACFOCA_000827"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6987570.1"
                     /translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
                     QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
                     SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
                     CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
                     LKAHGRELFVLG"
     gene            complement(8082..10772)
                     /gene="glnE"
                     /locus_tag="ACFOCA_000828"
     CDS             complement(8082..10772)
                     /gene="glnE"
                     /locus_tag="ACFOCA_000828"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HFC6987571.1"
                     /translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
                     AFADWDKIRAEENEEELARQLRGLRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
                     NTALDFAYAYYRDMYGTPIGRDTKSPQHLSVVAMGKAGGYELNVSSDIDLIFIYPESG
                     DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
                     QYLITQGREWERYAWCKGRVLTPYPNGIKSLVRPFVFRKYLDYGAYEAMRKLHRQIRS
                     EVGKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTQETLEKLAESGIMP
                     SENVETLLAAYRFLRDVEHRLQYWDDRQTQTLPASPEQRQRLAESMGFDDYADFLNAL
                     NQHRNQVNRLFNEILSEPGEQTQSSGEWQWVWQEKPDEEGRQCRLKEHGFDAETIAAR
                     LDQIRNGHKYRRLSAHAQPRFDALVPLLVQAAAAQTNPTDTLMRLLDFLENISRRSAY
                     LAFLNEHPQTLAQLAQIMSQSSWVAAYLNKYPILLDELISAQLLDTAFDWDKLAAELS
                     DGIKACGGDTEAQMDTLRHFQHAQVFRLTVQDLAGLWTVESLSDQLSALADTVIAAAL
                     SCAWADMPKKHRDTPQFAIVGYGKLGGKELGYASDLDLVYLYDDPHPDAGDVYSRLAR
                     RLTNWLSAATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
                     FICGTPEIQTAFDRIRTEILTAERDQTALSGEIIEMREKMFPTHPPADSNVKYARGGV
                     VDVEFIVQYLILAHARKYPQLLANYGNIALLNIAADCSLIDKNLAEQSRTAYRFYRRQ
                     QHNTKLRDAEKTEVSGELLAHYGNVRKLWREVFGEEAATA"
     gene            complement(10952..11287)
                     /locus_tag="ACFOCA_000829"
     CDS             complement(10952..11287)
                     /locus_tag="ACFOCA_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987572.1"
                     /translation="MTVDKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLLSKQGDPDFQGFAEDALDEI
                     SLFIFKKRP"
     gene            complement(11541..12014)
                     /locus_tag="ACFOCA_000830"
     CDS             complement(11541..12014)
                     /locus_tag="ACFOCA_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2247 family protein"
                     /protein_id="HFC6987573.1"
                     /translation="MNLDLTAQKVRLSWKDILWGYGNKYLGWADVAAYARKMTLSDHD
                     ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
                     EKIYADFDYPEEIESFVRYMPPKDGYIPSAHTYEENIARLYSHWEHYLNNGGGQG"
     gene            complement(12067..12348)
                     /locus_tag="ACFOCA_000831"
     CDS             complement(12067..12348)
                     /locus_tag="ACFOCA_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987574.1"
                     /translation="MENGQRNNRFPLEKRIFYLEHSGRYLMICALSDYSQNKHTVVMA
                     NFIYPDEKTDWRNLDDLFNELVLEELQASFMDWHPTVEEAISRHLEDFS"
     gene            complement(12435..>12632)
                     /locus_tag="ACFOCA_000832"
     CDS             complement(12435..>12632)
                     /locus_tag="ACFOCA_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987575.1"
                     /translation="SCLREAVPYLFAYPRYGYELLEIISALKETSDTTELFYEPGIVP
                     LLIDLYKEDSYLVNMVKRIFK"
BASE COUNT         2737 a         3265 c         3484 g         3146 t
ORIGIN      
        1 aaggataacc gaattatatt tgagatagct ccaaacttga taagttctgt taataatgtc
       61 aatgctgtcg gagacagttt ttctttgcaa aggtcttgga tggcgcgttc caccaaaccg
      121 ttttccttac ggattcaagc gattatccgt tatttcgccc gttttccctt gatgattccg
      181 gtttttcaac cgccgtttta tatttcctcg tcaataaact catcttcatg ccgcaagctg
      241 cggataaagg tttcaaaatc gggggcaagt tcgacgattt caaaatccga ttcttgctcg
      301 acaaacacca ctttcggctc gccgtctttt ccacactccc gatagtccaa ggcaaacatg
      361 gcatgaccgc ctgacgggtc gttggcaaaa tacacgccga tgggcggata ttcccattct
      421 tccatccaaa gtttttgccc tgtttcgccg cacaaactcc cttctttttc aaagccgatg
      481 cccgatacct cgcaaatttg cacatgatct ttcgcccacg aatttctctg tgtggtcgga
      541 aaacagtttt tgacaaatat tccgccgttt tgtaccgcca tcaattcaat aaaactttgc
      601 ggcaatttat agcccagttc actttctacg gcagccaaaa tttcaggggt aaacggggct
      661 tctttgtagt tttcatctgc ccaactgtcg gattcccata cggaggacaa atcaaaatct
      721 ttaaaaactt gggacataat gttcttcctt attgattttc agctataaac aagggttagg
      781 tatctatacc cggcttttac cgtccgtcat tcccgcgcag gcgggaatct agaacgtgga
      841 atctaaagaa accttttatc cgataagttc ccgtgccgaa aggtctggat tcccgcctgc
      901 gcgggaatga cggcggaggt ttgggcaaaa attgttgttc ccgttttcag acggcctctg
      961 ccatctccct tctacatctc ttccaatttc gcaaacttgg tgtccaactc tttcacgccc
     1021 tgtttgccga aattgatggt cagtcgggcg gattcgcctt tatctgcggc atcgataatc
     1081 acgccggtgc caaatttggc gtggcggacg ttttgtccga tgcggaagcc tgcgtaggtt
     1141 tgcggctgtt tgtagtcgtc gatgattttg tctttgaacg tggcagtttg acgcgtgttg
     1201 ccatagctgt cgtaggcggt ttttttgatg gacaggtagt gcaatacttc gggcgggatt
     1261 tcttcgacga agcgggagac gatgccgaat tgggtttgcc cgtgcagcat tctttgttgc
     1321 gccatggtga tgtagaggcg tttgcgggcg cgggtgatgg cgacgtacat gaggcggcgt
     1381 tcttcttcga ggccgccgcg ctcggcaagg ctcatttcgc tggggaaacg gccttcttcc
     1441 atgccggtga ggaagacggc gttaaattcc aagcctttgg cggcgtggac ggtcatgagt
     1501 tggacggctt tttcgcccgc gcctgcttgg ttttcgccgg attcgagggc ggcattgctt
     1561 aggaaggcga ggatggggaa ggctgggtcg tctgaaatgt tttcaggcag gatttcgaag
     1621 ttgctgtctt cgggtttgaa ctcgatggcg gcattgacga gttcgtcaag gttgtcgaga
     1681 cggtcttggt tgtcgccttt ttgggtgcgg tagtgttcgg tcaggccgct gtctttgagg
     1741 atgccgacga tgatttcgga caggggcagt tgtccgactt ggttgcgcag tgcttcaatc
     1801 aggcggacga aggcggcgat tttggcggct ttcgcgccgg cgttgcaggc tgcctgccaa
     1861 agggtgatgc cttgttcgtt tgaggccgtc tgaaggttct cgacggtgcg tgcgccgatg
     1921 ccgcgcggtg ggaagttgat gacgcgcaaa agggcgttgt cgtcgtcggg attgacggcg
     1981 aggcgtaggt aggcgagcgc gtgtttgatt tcttggcgtt cgtaaaagcg caagccgccg
     2041 tagattttgt aggggatgcc gctgcggaac aggctttgtt cgataacgcg ggattgggcg
     2101 ttgctacggt agaggacggc gatttcgtcc aaatcccagc cttcgcgttc gagggctttg
     2161 gtttcgtcca agatgaaccg ggcttcttcg aggtcggtaa aggcggagta gtagcggatt
     2221 ttgtcgcctg cttcggcgtc ggtgcgcagg tttttgccga gtcgttcgtc gttgttttca
     2281 atcacggcat tggcggcggc aaggatgttg ccgacggagc ggtagttttg ttcgagtttg
     2341 acgggcgcgt cgatgtggaa ttcttccatc agcgcggtca tgttgccgac gtttgcgcca
     2401 cggaaacggt aaatgctttg gtcgtcgtcg ccgacggcaa ataccgctgc gtttccgccc
     2461 gccatgagtt tgagccaggc gtattgcagt ttgttggtgt cttggaactc gtcgacgaga
     2521 atgtggttga agcggttttg gtaatgctgg cgcaggattt cgttgctttg cagcatttcg
     2581 tagctgcgga gcatgagttc ggcaaaatcg accacgcctt cgcgttggca gattttgtcg
     2641 tattcggcgt agcattcaat catgcggctt gtgtgcggat cgggcgcact caagacggaa
     2701 gcgcgcaaac cggattcttt ttgcgcgttg ataaagcctt gcagcgaacg cggcgcgatg
     2761 atttcttcgg cgatgttgag gcttttgagc aggcgtttga tgagggaaag ctggtcgccg
     2821 ccgtcgagga tttgaaagga agacggcaaa ccggcatcgc ggtggtgcag ccgtagaaag
     2881 cggtggcaga ggccgtggaa cgtgccgagc cacatagcgc ggacgtcgac gggaatcatc
     2941 gcgccgagtc gggtttgcat ttctttggcg gctttgttgg taaacgttac cgccataatg
     3001 ctgtgcacgc ttgcctgacc ggtttgcaaa agccatgcga tacgcgtggt cagcacgcgc
     3061 gttttgccgc tgcccgcgcc tgccagcaca agggcggatt gcggcggcca ggttacggcg
     3121 gaaagttgtt cagggttcaa gccttgcagc aggttggggg cggattggtc gggaaacata
     3181 gagatgccgt ctgaaaagtg gaatgcgcta ttttaataga aacggtttaa ggtcgtctga
     3241 aaaagtgcag cggcagggca gcacttttcc aatcgacggt ttgatgatgc agcacagaag
     3301 atattgacaa accgccgccc ctgcatatag attcattaaa acataaccaa aatgaacaac
     3361 aaatgagaat agagatcaca ccaatcagcg aatccgcttt ggtctgccga ctgaatgcac
     3421 cttccgaact gggcaaacag caaaagttgt gggcgtttgc cgctgcgctc gggcagcacg
     3481 acaggattga ggaagtggtg gtcggcatga acaatctgac cgtgttcacc cgtttcgata
     3541 ccgatttggc gacgcttgcc gatgaattgc aatatgtgtg ggaacacacc gccgttacag
     3601 accatcaggg caaactggtg gaaattcccg tctgctacgg cggcgaatac ggcccggatt
     3661 tggcggaagt cgctgctttc catcagacgg ttatttccga aatcgtccgc cgccatacgg
     3721 cgcaaactta taccgtattt atgatgggct tccagcctgg tttcccttat ctgggcggct
     3781 tgcccgaagc attgcacacg ccccgccgtg ccgtgccgag aacgtccgtt cctgccggtt
     3841 cggtcggtat cggcggcagt cagaccggtg tgtatccgtt cgcttcgccc ggcggctggc
     3901 agattatcgg cagaaccgaa ttacccttgt tccgagccga tttgaatccg ccgaccctgc
     3961 tggcggcggg tgaccaagtc cgctttgttg cagaaaggat tgagccatga ttcacgtttc
     4021 ggcagtgcag gcaccggcgc atattcagga taccggacgc tacggacacc ggcgttacgg
     4081 catcggtcat gccggtgcga tggacacggt tgctttggcg gcgggtaata ttttattggg
     4141 caacgacgaa ggcacggccg caatcgaaat cgctttgggc gggataatgc tggtgtttga
     4201 acgggatacg ccgttttgtc tcaccggtgc cgtgtatcag gcggaattgg acggcgaacc
     4261 ggtctattcg tattggcgtt ataccgcccg caaagggcag accttgaaaa tggtgcgtgc
     4321 cgtgcagggc atgtacggct atgtgtgcgt ggcgggcgga tttgatgtgc cggaagtgat
     4381 gggttcgaga agtaccgacc tgaaagccgg tttcggcggc catcagggca gaatgctgca
     4441 aaaaggcgat tatctcccca tcggcaaagg tgcgcaggaa ttgtccaaag tcggcattgc
     4501 cccgataccg tttaccgata ccgtccacct tgttccttcg tcggaatatg ccgctttcag
     4561 tgaaaaaggg cgtctgaatc tggaacggga aacgtggacg ctgcaaagcg atagcaaccg
     4621 catgggctac cgcttcgacg gacagccgct gaccctgtcg caacctttgg aaatgctgtc
     4681 ccacgctgtt caggcaggaa ccgtgcaggt gccgcccggc ggcaaaccga ttatcctgct
     4741 ggccgatgcg caaaccaccg gcggttatcc gaaaatcgct accgttgccg ccgccgattt
     4801 gggcaggctg gcacaggtgc gcttcggcag caaagtcaaa ttcaaaataa tcggcttgaa
     4861 agaagccacc gccctgcggc gcaaaaacca agcctatctg aaccaaatac ggagaatcac
     4921 ccatgaagca ggttgattta aacgccgatc tcgccgaagg ctgcggcagc gacgaagcct
     4981 tgttgcagct gattacttcg gccaacatcg cctgcgccca acacgccggc agcattgccg
     5041 atattcgggc ggcattggcg tatgcccaac aaaacggcgt gcgcatcgga gcacaccccg
     5101 gctatcccga tcgggaaaac ttcggccgta ccgaaatgaa tctgtccgaa gccgatttgc
     5161 gggcgtgtct gaattaccag ttgggcgcat tgcaggcctt gtgccgtgat cagggtttgg
     5221 aaatggctta tgtcaaaccg cacggcgcaa tgtacaatca agcggcgaaa aaccgtgcgc
     5281 tggcggatac cgttgcccga attgtggcgg atttcgaccc gaaattgaaa ttgatggcac
     5341 tttccggcag cctgctcttg gaagccggaa aagccgcagg cttgggtgtg atttccgaag
     5401 tattcgccga ccgccgctat atgcccgacg gtacgctggt tccccgcagc cgccccgatg
     5461 cgcaggtgga cagcgacgaa gaagccatcg cccaagtatt gcagatggtg cgggacgggc
     5521 aggtcaaagc agtggacggc agcctggttg ccgtgcaagc cgacagcatc tgtctgcacg
     5581 gagacgggcc gcacgccgtg gtgtttgccg aaaaaatccg gcaggaacta ctggcggcag
     5641 gcatcaaagt ttctgcttga aaaacagttc ataggccgtc tgaaaaccgc aggtttcgcc
     5701 aaaacgagca aagcgagttt ctgcgtagct aaaaccgcag gtttcgccca aacacagcaa
     5761 caaccaattt tatagaggat aagcgattat gtctgatcaa aaaaaccgca gaaatgcctt
     5821 aatcggcgct gcattcctga tggcgacttc cgccatcggc ccgggctttc tgacccaaac
     5881 cgccaccttc acccaagcac tggcggcaag tttcggcttt gtgattctgc tctcgattct
     5941 gctcgacatc ggggcgcagc tcaatatttg gcggattgtc gccgtttccg aaaaacaggc
     6001 gcaggatatt gccaatcagg tcttgcccgg cgcaggctat ttcttggctg tgctgattgt
     6061 gatgggcggt ttggcgttca atattggcaa cgtcggcggc gcaggcttgg gtctgaacct
     6121 gctgaccgga ctgtcaccgg aaaccggtgc cgtgatcagc ggcgtgattg ccatcggtgt
     6181 gtttctgttt aaagaagcag gcaaagtgat ggacaaattc gcccaagtga tgggtttcgt
     6241 aatgattgcg ctgacggttt atgtggcatg gcaggcgaat ccgccgctgg cagatgccgc
     6301 cgtgcatacc tttatgccgg aaaaactcga tgcaatggcg attgttacac tggtgggcgg
     6361 cacggtcggc ggctacatca ccttcgccgg tgcgcaccgt ctgctggacg caggtatcaa
     6421 aggcaaatcg gcgttgccgg aagtgagcca aagctcggtg cgggcgatcc tgattgcctc
     6481 gattatgcgg attgtattgt ttttggcggt tttgggcgtg gtcagccaag gcgtacagct
     6541 caatcccgac aaccctgctt ccacaccgtt tgaatatgcg gcgggataca tcggcctgct
     6601 gattttcggc gtggtgattt gggcggcttc gattacttcg gtgattggtg cggcttatac
     6661 ttcggtgtcg ttcttctccg gtctcagccc gtctatcgaa cgcaataaaa acaaatggat
     6721 tattgccttt atcgccgtgt ccaccgccgt attttccacc atcggcaaac cggcgcaggt
     6781 gctggtgttc gtaggcgcat taaacggcct gattttaccg atttccctcg gtctgattct
     6841 gattgccgcc tacaaaacca aaattgtcgg cgactacaaa cacccgctgt ggctcaccgt
     6901 ttccggcgtg attgtggtcg gtttgatggc agtactcagc gccatcacca tcagcaaata
     6961 tatcggcggc ttgttcggct gaaccttgta gcgcagatgt ttgattttgt atattatccg
     7021 aagtttgccg cctgatatgg aaaattcctg tttcagacga tgtatccggt ctgaaaccta
     7081 ttcacaacta tgaaacgctt cacctatact ctttccgacg gtttgtgcat cgaaatcgaa
     7141 ctcaaacgca gtgccaagaa aaatctgatt ctgcgccccg tcaatatgca gacggtcagc
     7201 atcaacgtcc cacccttttt tcaagaccac gcgttagcaa actggctggc ggcaaacgaa
     7261 acgattttgc ggaacacgct tgccaaaacg cccgtgcatc ctgtttccca cccaaactta
     7321 cccgagtgga tttggtatcg gggaataaag accaagctgg atacccacag ccaaagccat
     7381 atccgtatca cgtcgtctga aatcctgctt ccccgaaaag aaaccgccgc acaaatcgac
     7441 cacctgcgcc gcctgttgaa cgaacgcgcc cgcgaatacc tgctgccccg ccttgaaaaa
     7501 cacgcagccg aaacaggact gacgcccacc gccacagacc tgagcaacgc caaaaccttt
     7561 tggggcgtat gccgcccgca caccggcatc cgcctcaact ggcggctgat cggcacgccc
     7621 gaatacgtcg ccgactatgt ctgcatccac gaactctgcc acctccgcca ccccgaccac
     7681 agtccgcgct tttggcattt ggtgaacacg ctgacgccgc ataccgacaa tgctaaaagt
     7741 tggctgaagg cgcacgggcg ggaattgttt gtgctggggt aaaggctaac cgtagcgtgg
     7801 gcttcgcccg cgagaatcca ccccctcccg tacggaggga gagggttgga gagagggtgg
     7861 ctcttgtccc ttgttctgta tatttgcaag ccaccctatc ctagccttcc cccgttggat
     7921 aagggaaagg gatcaagctg ctgtaactga aagaggaatc cggtttttgg gtttcagcca
     7981 ttcccgataa atcgctttag ctctgccgca accttaaaac ggcacggtac gaaaataccg
     8041 tctgaaaccc agattgtcag gcttcagacg gcattttttg ttcaggcggt tgccgcttct
     8101 tcgccgaaca cttcccgcca caatttcctg acattgccgt aatgtgccag caattcgccg
     8161 cttacttcgg ttttttctgc gtcgcgcagt ttggtgttgt gttgctgccg gcggtagaag
     8221 cggtaggcgg tgcggctttg ttcggcgagg tttttgtcga taaggctgca gtcggcggcg
     8281 atattcaaga gggcgatgtt gccgtagttg gcgagaagtt gcggatattt tcgggcatgg
     8341 gcaaggatga ggtattggac gataaattcg acgtcgacca cgccgccgcg tgcgtatttg
     8401 acgttgctgt cggcaggcgg atgggtgggg aacatttttt cgcgcatttc gatgatttcg
     8461 cctgacaagg cggtttggtc gcgttcggcg gtgaggattt cggtgcggat gcggtcgaag
     8521 gccgtctgaa tttcgggtgt gccgcagatg aagcgggcgc gggtaaggga ttggtgttcc
     8581 cacgtccagg cgttttcgcg ctggtatttt tcaaaggcgg cgatgctgtg ggcgaggaaa
     8641 ccggcgtcgc cattagggcg caggcgcagg tcggtttcgt agaggctgcc tgcgccggtg
     8701 gcggcggaaa gccagttggt caggcggcgg gcaaggcggc tgtacacgtc gcctgcatcg
     8761 ggatgcgggt cgtcataaag atagaccaag tcgaggtcgg aggcgtagcc gagttctttg
     8821 ccgccaagtt tgccgtagcc gacgatggcg aattgcggtg tgtcgcggtg ttttttgggc
     8881 atatccgccc acgcgcacga aagggcggcg gcaatgacgg tgtcggcaag ggcggagagt
     8941 tggtcggaga gggattctac cgtccacaat ccggcgaggt cttggacggt gaggcggaag
     9001 acttgggcgt gttggaaatg gcgcagggtg tccatttgcg cttcggtgtc gccgccgcag
     9061 gctttgatgc cgtctgaaag ttcggcggcg agtttgtccc aatcaaacgc cgtatctaat
     9121 aattgcgcac tgatgagttc gtccaacaaa atcggatatt tgttcagata cgccgccacc
     9181 catgagcttt ggctcataat ctgagcgagt tgcgccaggg tttgcggatg ctcgttgagg
     9241 aaggcgagat aggcggaacg gcggctgata ttttcgagga aatccaacag ccgcatcaat
     9301 gtatcggtcg ggttggtttg cgctgccgcc gcctgtacca gcaacggcac aagcgcgtcg
     9361 aaacgcggct gggcgtgggc ggaaaggcgg cggtatttat gcccgttgcg gatttggtcg
     9421 agccgcgcgg cgatggtttc ggcatcgaac ccgtgttcct tcagacggca ttgccgccct
     9481 tcttcatcgg gcttctcctg ccaaacccac tgccattcgc cgctgctttg cgtttgttct
     9541 ccgggttcgc tcaaaatttc gttgaacaac cggttgactt ggtttcgatg ttgatttaaa
     9601 gcgttcaaaa aatcggcgta atcatcaaat cccatacttt cggcaagccg ttgccgctgt
     9661 tcgggcgaag ccggcagggt ttgggtttgc cggtcgtccc aatattgcaa acgatgttcg
     9721 acatcgcgca aaaagcggta ggcggcgagc agggtttcga cgttttcaga cggcataatg
     9781 cccgattcgg cgagtttttc cagcgtttcc tgcgtgcctt tcagttgcag cgcgcgcatt
     9841 tgtccgccgc gtatcatctg gaaaatctgg gcgataaatt cgacttcgcg gatgccgccc
     9901 gcgccgagtt tgatgttgtc cgccatccct tttttgccga cttcgctgcg gatttggcgg
     9961 tgcagcttac gcatcgcctc atacgcgccg taatccagat attttcggaa cacgaagggg
    10021 cgcaccagcg atttgatgcc gttcggatac ggcgtaagca cgcggccttt gcaccacgca
    10081 taacgttccc attcgcgccc ctgcgtaatc aggtattgct ccagcgcggt ttcgctcaat
    10141 accagcgcgc ccgaatcgcc gtccggccgc agccgcatat cgacgcggaa cacctgcccg
    10201 tcggcggtaa tgtcattcag caacgcaatc agtttctgcc cgactttggt gaaaaattcc
    10261 tgattgccgc gttcgcgcct accgtcggta tcgcccgatt cgggatagat gaaaatcaaa
    10321 tcgatgtcgg aagacacgtt caactcatag ccgcccgcct tgcccatcgc caccacactc
    10381 aaatgctgcg gcgatttcgt atcacgcccg atcggcgtgc cgtacatatc ccgataatag
    10441 gcgtaggcaa aatccagcgc ggtattgacg gcaaaatcgg caaacagcgt aatcgtgcgg
    10501 gttacttcgt tcaaatcgct gatgcggttg atatcgcgca cgataatctg cgacaccaca
    10561 taacggcgca acccgcgcaa ctgccgcgcc aattcttcct cgttttcttc cgcacggatt
    10621 ttgtcccagt cggcaaaggc ttggaaatcc gcttcggtca aaaccttgtc caacatgggc
    10681 aggaaaattt caggcttgag tttgccgttg tcgagctggc gggcaaggaa cagggaatgg
    10741 cggcgggcag tgtcgaggcg gttgtcggac atttcggatt ccgtttgaaa aaatggcagg
    10801 aagatgatgg cggattcact tcaaatcagg acagggcgag gggatgccgt actggtttaa
    10861 agtcaagcca ctatatcata gcaaccttcg atgtcgtctg aaagccggat aacgcttcag
    10921 acggcatcgg attgacaggt ttaatccgcg cttacggacg ctttttaaat ataaataaag
    10981 aaatctcgtc taacgcatct tcggcaaaac cttgaaaatc cggatcacct tgttttgaga
    11041 gcaataaagc aatcacttta tcgcaatcgc cgatattttc atgcatcctg gcgagatgtc
    11101 cgaaacaggt taatgacaat ctggcaatat ccaagtcttt atgtttcgac aactccgtca
    11161 acttctcgga aatccagggg atttcatcct cctccgagct gaaggtcata ccgagcatac
    11221 cgtcaataac actctgttta ttttcagaat aaatcatctt ttctacttgt tccttatcaa
    11281 ccgtcatttt ttaatttttc cttttaaatt aaccaatcct gctttcttta aagcattttt
    11341 gccgggcggc aggattgtta tcaaacattt gcacccggtc cggcaaaacg atttccttat
    11401 cggtttatcg gcaacgatgc gggcggttcg ggttttgccg cttccggaat gcagcccgcc
    11461 cccgctttca aatcttccgc tctaatccgt ttgccgtctg aaggccggat aatgcttcag
    11521 acggcatcgg attgccggtt ttaaccctgc cctccgccgt tgttcaaata gtgttcccag
    11581 tgagaatata accgggcaat attttcttca taggtgtggg cagaaggaat ataaccgtct
    11641 ttgggcggca tatacctgac aaatgattct atttcttccg gataatcaaa atctgcataa
    11701 attttttcaa cttcccccaa aggatcctca aattcttctt ttctatggaa tacatcgctt
    11761 aagaggacgt acagccaatt tttaggggaa taatccctca tttccgaagc caaatcttcc
    11821 agaacaggct ttaattcaag aatattggat ttgttgatta aagatagttt gaacacacgt
    11881 tcatcatgat ctgaaagcgt catttttcgg gcataagctg ccacatcagc ccaacccaag
    11941 tatttattcc cataccccca cagaatatcc ttccaagaaa gacggacttt ttgcgcggtt
    12001 aaatcaaggt tcatttttta ctccgattgc ctgccccgtc attccgcccc ttccgattga
    12061 cgcctgttac gaaaagtctt ccaaatgacg gctgattgcc tcttcaacag tcggatgcca
    12121 atccataaat gaagcctgca attcctctaa aaccaactca ttgaataaat catccaaatt
    12181 ccgccaatcc gttttttcat ccggatagat gaaatttgcc ataacgacag tatgtttgtt
    12241 ttgggaataa tccgataagg cgcaaatcat cagataccgc cccgaatgct ccagataaaa
    12301 aattcgtttt tccaaaggaa accggttatt ccgttgcccg ttttccattt ttcatccttt
    12361 ttaacgtatc ggcttccgcg tccttcaaat tgagttacct gccttccgcc aagcaaacgc
    12421 ccgcgcccct ttcatcattt gaatatccgt ttgaccatat ttaccagata actatcttct
    12481 ttatataaat caatcagcaa aggcacgata cccggctcat aaaataattc tgtcgtatca
    12541 gatgtttctt ttaacgcgga aattatctcc aacagttcat acccgtatcg gggataagca
    12601 aacaaatagg ggactgcttc ccgcaaacat ga
//
LOCUS       DAXIFS010000041        12487 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.041, whole genome shotgun sequence.
ACCESSION   DAXIFS010000041 DAXIFS010000000
VERSION     DAXIFS010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12487
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.041"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            214..696
                     /locus_tag="ACFOCA_000833"
     CDS             214..696
                     /locus_tag="ACFOCA_000833"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6987576.1"
                     /translation="MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLV
                     EEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGD
                     VVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
                     "
     gene            783..1595
                     /gene="hpnC"
                     /locus_tag="ACFOCA_000834"
     CDS             783..1595
                     /gene="hpnC"
                     /locus_tag="ACFOCA_000834"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HFC6987577.1"
                     /translation="MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMP
                     SEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDV
                     VKTRYAHFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
                     VDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARE
                     LKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKRALWK"
     gene            complement(1666..2136)
                     /locus_tag="ACFOCA_000835"
     CDS             complement(1666..2136)
                     /locus_tag="ACFOCA_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HFC6987578.1"
                     /translation="MYDVNTHDVRRFFARVWQQRLNPLQLSALEQKALRIIEAHPEYH
                     RYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGW
                     LEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAEDQARLNPHKIA"
     gene            2227..4068
                     /locus_tag="ACFOCA_000836"
     CDS             2227..4068
                     /locus_tag="ACFOCA_000836"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HFC6987579.1"
                     /translation="MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKA
                     FVPELAVADDGVNVRFRIADGYYMYQAKIVGKTNPADLLGQPSFSKGEEKEDEFFGRQ
                     TVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEVGVCYPPVDTEFDISGNGTYHPQTDE
                     PASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTA
                     CMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQ
                     QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSA
                     LIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPKAGD
                     WMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKA
                     VAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKA
                     AMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANKP
                     EHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR"
     gene            complement(4584..5780)
                     /locus_tag="ACFOCA_000837"
     CDS             complement(4584..5780)
                     /locus_tag="ACFOCA_000837"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6987580.1"
                     /translation="MSQKLILVLNCGSSSLKGAVLDNGSGEVLLSCLAEKLNLPDAYI
                     TFKVNGEKHKVDLSAHPNHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESIL
                     VDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKDLPNVVVFDTSFHQTMPEVAYKY
                     AVPQELYEKYGLRRYGAHGTSYRFVADETARFLGKDKKDLRMVIAHLGNGASITAVAN
                     GESRDTSMGLTPLEGLVMGTRSGDIDPSVFGFLAENANMTIAQITEMLNKKSGLLGIS
                     GLSNDCRTIEEEAAKGHKGAKLALDMFIYRLAKYIGSMAVAAGGLDALVFTGGIGENS
                     DIIRERVIGYLGFLGLNIDQEANLKARFGNAGVITTADSKAVAVVIPTNEELMIAHDT
                     ARLSGL"
     gene            6131..6430
                     /locus_tag="ACFOCA_000838"
     CDS             6131..6430
                     /locus_tag="ACFOCA_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987581.1"
                     /translation="MHYFSIHDQSGRHIGFFILLADDESEARPQSGRFAVKLEGGMEN
                     HVLSPFGQTEIPQYWRVVKDRIELFFDEAPVGTLRNEYLTVSGQTFVLNDLTGNM"
     gene            6430..6615
                     /gene="ccoS"
                     /locus_tag="ACFOCA_000839"
     CDS             6430..6615
                     /gene="ccoS"
                     /locus_tag="ACFOCA_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFC6987582.1"
                     /translation="MESMFILVPISIILAFVIGWFFWWSGKNGQFDDLEGPAHRILMD
                     DDSTSKLIEKERENDVR"
     gene            6605..7915
                     /locus_tag="ACFOCA_000840"
     CDS             6605..7915
                     /locus_tag="ACFOCA_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6987583.1"
                     /translation="MYAKKGGLGLVKSRRFAPLFATQFLGAFNDNVFKTALFVMIGFY
                     GLGQNGFLPAGQMLNLGALLFILPYFLFSSLSGQLGNKFDKAVLARWVKVLEMIIMAV
                     AAYGFYIRSAPLLLACLFCMGAQSTLFGPLKYAILPDYLDDKELMMGNSLIESGTFVA
                     ILFGQILGTAVAGVPPYIVGILVLLVAVGGTVGSLFMPSVPAKAADTQIEWNIVRGTK
                     SLLRETVRYKPVFTAIIGISWFWFVGAVYTTQLPTFTQIHLGGNDNVFNLMLALFSIG
                     IAAGSVLCAKFSRERLMLAWVTVGALGLTVCGLVLVWLTHGHRFEGLNGIFWFLSQGW
                     AYPVMAVMTLIGFFGGFFSVPLYTWLQTASSETFRARAVAANNIVNGIFMVSAAVLSA
                     VLLFLFDSISLLYLIVALGNIPLSVFLIKRERRFLGAAAIRKKP"
     gene            8073..8807
                     /gene="dnaQ"
                     /locus_tag="ACFOCA_000841"
     CDS             8073..8807
                     /gene="dnaQ"
                     /locus_tag="ACFOCA_000841"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HFC6987584.1"
                     /translation="MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLY
                     VHPERDMPEEAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFL
                     NMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALI
                     DCELLGEVYLAMTRRQFDLMGAAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHG
                     QYLDGLGEACIWRKEAVPSENGGTDA"
     gene            8804..9493
                     /gene="ispD"
                     /locus_tag="ACFOCA_000842"
     CDS             8804..9493
                     /gene="ispD"
                     /locus_tag="ACFOCA_000842"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HFC6987585.1"
                     /translation="MKRKNIALIPAAGIGARFGADKPKQYVEIGSKTVLEHTLGIFER
                     HEGVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAET
                     DNILVHDAARCCLPSEALTRLIEQAGNAAEGGILAIPVADTLKRADGGNISATVERTS
                     LWQAQTPQLFRAGLLHRALAAENLDGITDEASAVEKLGIHPLLVQGDARNLKLTQPQD
                     AYIVRLLLDAV"
     gene            9525..10007
                     /gene="ispF"
                     /locus_tag="ACFOCA_000843"
     CDS             9525..10007
                     /gene="ispF"
                     /locus_tag="ACFOCA_000843"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HFC6987586.1"
                     /translation="MTNIRIGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALL
                     HAVTDALLGAAGLGDIGSHFPDTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVI
                     AQKPKLAPHIPQMRANIAADLGIDISCVNIKGKTNEKLGYLGRMEGIEAQAAVLLVRI
                     "
     gene            10084..10755
                     /gene="rpiA"
                     /locus_tag="ACFOCA_000844"
     CDS             10084..10755
                     /gene="rpiA"
                     /locus_tag="ACFOCA_000844"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HFC6987587.1"
                     /translation="MTTQDELKRIAAEKAVEFVPENEYIGIGTGSTINFFIEALGKSG
                     KKIKGAVSTSKKSSELLAQYDIPVVSLNEVSGLAVYIDGADEVNHALQMIKGGGGAHL
                     NEKIVASASEKFVCIADESKYVSRLGKFPLPVEVVESARSLVSRKLLAMGGQPELRIG
                     YTTFYGNQIVDVHGLNIDKPLMMEDEINKITGVLENGIFARDAADVLILGTEEGAKVI
                     YPCQG"
     gene            10824..11495
                     /locus_tag="ACFOCA_000845"
     CDS             10824..11495
                     /locus_tag="ACFOCA_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFC6987588.1"
                     /translation="MQIKKIMKWLPVALSLLGALGYTGYGSEAVRTAVAVLDVLGAAG
                     DAGSDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQA
                     YGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSY
                     AKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGNKDWMDAVGE
                     WLGIW"
     gene            11511..11690
                     /locus_tag="ACFOCA_000846"
     CDS             11511..11690
                     /locus_tag="ACFOCA_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987589.1"
                     /translation="MNGKCRLKTARPAFLRRRATAVCRDKKVQAAVFTVKWRIILQRR
                     QFRRFLIRTVYGFSF"
     gene            11674..12420
                     /locus_tag="ACFOCA_000847"
     CDS             11674..12420
                     /locus_tag="ACFOCA_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6987590.1"
                     /translation="MDFRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALAR
                     LIHLEKAGAPMRVLAWALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILV
                     SGEAAIALRRGYGPLIAGSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQ
                     AMRYVILPQALRRMLPPLASEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPL
                     YTVALIYLLMTTFLGWIFLRLEKRYNPQHR"
BASE COUNT         2734 a         2960 c         3744 g         3049 t
ORIGIN      
        1 ttgtatgatt tattaaggcg gattgggaaa gtcggcagac aggtcggaat ggttttaaga
       61 atgttgtaaa aaagttacac cgcaataaaa taacaaaaat ttacattgaa atatgtgctg
      121 tacagtttat gaacaggtta acggtaatcg gccggcgcgg cggttgtgtt agaatgcgcc
      181 tgtaatcaat ctgctgttcc tgaaaggaca aatatggcta tcgtgaaaaa ttccgtggtt
      241 tcgctgcatt atgagatgta tgatgccaac aatcagcttt tggacaaaac cgaagaaccg
      301 attgcgtatc tgcacggcgg ttacgacggc attttccctt tggtggaaga ggcgttgcac
      361 ggtaaggatg ccggcgatac ggtcgatgtg gcgctgtcgc ccgacgatgc gttcggcgag
      421 caggatccgg agttggtccg tattgaagat gcgggcgtgt tccctgttga agtcgaagtc
      481 ggcatgatgt ttgaagccga cgatcctgaa accggcgatg ttgtcgtcta tcgtgtaacc
      541 gatgttgccg acggcaaggc ggtggtggac ggcaaccatc ctttggcagg catgaaaatc
      601 cgctttaagg ctacggttga aagcgtgcgc gatgcatccg atgaggaaat cgcacacggt
      661 catgtccacg gcccgcacgg tcatcaccac cactgattgc cggcagcttg gaggtatctg
      721 atgccgtctg aaaagggttt gttccgtttc agacggcatt ttgtttgatg gatggagaag
      781 gtatgtcggt tgggcattat gagaattttc ccgtcggttc gctgattttg ccgcgcaggt
      841 tgaggaagcc ggttcacgcg gtgtacgcgt ttgcacggac ggcggacgat atggcggacg
      901 agggcagtat gccgtctgaa gccaggttgg cggggttgga gggtttgcag cgcgagttgg
      961 acgtgttggc atcgggcggc cggtcggcgc atcctttgat tgcacgattg gatgccgagg
     1021 cggttgtgcc gttcggtttg gatttgcagc cgttttatga tttgctttct gcattttctc
     1081 aggatgtggt taaaacgcgg tacgcgcatt tcggcgagct ggccgattat tgtcggcgtt
     1141 ccgccaaccc tgtcggacgc attatgctgg ctttgtacgg gaaaacggat gcggtgtgcg
     1201 tggcgcaaag cgacggtatc tgtacggctt tgcaactggt gaatttttgg caggatgtgg
     1261 ctgtggattg gcaaaagggc agggtttata tcccgcagga cgatttgttg aaattcggtg
     1321 tttccgaagg acagattgcg gagggtaggg cggatgcggc gtttcagcgg ctgatggcgt
     1381 atgagtgccg gcgcgcattc cgtatgctga aggcgggttc gcctttggcg cgcgaattga
     1441 aagggcgtat cggtttggaa ctccgtatga ttgtgttggg ggcgcagttg attttgcaga
     1501 aactggacgc gtgccgatac gatgtgtttg cacaacgtcc ggttttggat aagaaggatt
     1561 ggttgattat gttgaaacgc gcgttgtgga aatgatgggg gaaatgaatg ccgtctgaaa
     1621 ggggttgttc cgcttcagac ggcattttgc aggcggttgg tatggtcagg cgattttatg
     1681 cgggttcaac ctggcttgat cttctgcacc caagccgatg agtttgcgca gtcgggtcat
     1741 gtagaaattg acatccaaac cggtgccgta gcgttgcgcc gtccacagtg tttccgccag
     1801 tgcctccatc atttcgtgtt cggcttccag ccagccgcgt ttggcgcaca gggtgtcgtg
     1861 gattgcgcgt atgccgtgcg gctggtctat gcccgcctgt tcttggacgg acaaatgcag
     1921 cgacatatgc aggaaggggt tgctttcgcc gttttcgggc agccagtcgg tgtccagatg
     1981 gtcttcgatg cgttcgagat aacggtggta ttcgggatgg gcttcgataa tgcggagggc
     2041 tttctgttcc agtgcgctca gttgcagcgg attgagccgc tgctgccaca cgcgggcgaa
     2101 aaagcggcgg acatcgtggg tattgacatc gtacatggcg ggttcggtaa gatgtttatg
     2161 gaaataggtt cggataatgg cgggttttac ataaattaaa tcccaccgtc aaccttacca
     2221 tttataatgc agacaaatta tttgtctgaa acggattcga ttatgaaaaa actgatttgc
     2281 ctgttcgccg tatttttgat gttgtgcgga cgagctttcg cgctggatgc gaacgatctg
     2341 ctgccgccgg aaaaggcatt cgtgccggag cttgccgttg ccgacgacgg tgtgaacgtc
     2401 cgtttcagga ttgccgacgg atactatatg tatcaggcga aaatcgtcgg caagaccaat
     2461 ccggcggatt tgttgggaca gccttctttc agcaagggcg aagagaagga agacgagttt
     2521 ttcggcaggc agacggttta ccatcacgaa gcgcaggttg cctttcctta tgcaaaggct
     2581 gtcggcgaac cgtataaatt ggttttgacc tatcagggct gtgccgaagt cggcgtgtgc
     2641 tatccgcccg tggataccga gtttgatatt tccggcaacg gcacttacca tccgcaaacc
     2701 gacgaaccgg catccgccaa agaccgcttt ttgcagcctt cctctcaaaa cggcagcggg
     2761 gcgctgccgc ccccgaaggg ggatgagggc ggcgacagcc gtttcaagct gtcttgggat
     2821 acgctcaacg ccaatctttt ggcgtttttt ctcgccggtt tgggtctgag ttttaccgcc
     2881 tgtatgtatc ccctgttgcc gattgtttcc agtattgtgg tcggcgacaa aaaggcgggc
     2941 aaggcgcggg cgtttgtgct gtccgtcgtt tatgttcagg gtttggctct gacttatacg
     3001 ctggtcggca ttgttgccgg actgacgggc gcgctgctga ccgtatggtt gcagcaggct
     3061 tgggtcgtgt tggcggcatc ggctttgatg gtcgtcttgg cactgtctat gttcgggctg
     3121 ttcaacatcc agcttcccaa cgccgtgcag tcgtattttc agaatcaaag cagcaggctt
     3181 tcaggcggta aaatcgtttc cgtctttatt atgggcatat tgtccgcgct gattgtcggg
     3241 ccgtgcgtcg ccccgccgct ggcatttgct ttgggctaca tcggtcagac gggcgatgcg
     3301 gttttaggcg gtttggcact ttacactttg gcgttgggca ccggcgttcc gctgattgcc
     3361 atcggcacgt tcggcgggca tatcctgcct aaggcaggcg attggatgaa tgccgtcaaa
     3421 tacgctttcg gctttatcct gcttgccgtc gccgtttacc tcgccacgcc gcacttgccc
     3481 tattatctcg tcgtcgcgct gtacacgctg ctgatgctgg ttcctgcctg tatgctgctg
     3541 gtcaacggac gcaggcagaa acgccgtccg aaagctgtgg cattcgcatt gggcggcata
     3601 ttgctgatag gcggcgcgtg gttcggctgg cagggcgcaa acggcaaaac gaccgcgctg
     3661 caccatttcc tgaccctcaa tccgccggcc gaagcaggca aatcttcgga acacggaaaa
     3721 atgtttgccg atactgccgc gctgaaggca gcgatggata cggcgttgaa agaacatccc
     3781 gacaaacccg tcgttttgga tttttatgcc gactggtgca tttcctgcaa agaaatggcg
     3841 gcttacacgc tcaatcagcc ggaagtgcat caggcagtcg atatggaacg ctttttccaa
     3901 atcgacgtaa ccgccaacaa gcccgaacat caggcgttgt tgaaagaata cggtctgttc
     3961 gggccgccgg gcgtgtttgt cgtccgctcc gacggcagcc gcagcgagcc gctgctgggt
     4021 tttgtcaaag cagacaagtt tatcgagtgg tatgaacaaa accgctgatt ccgatgtttc
     4081 aaatgccgtc tgaagttctc agacggcatt tttgtcagaa aggaaaacgg caatatccac
     4141 tatacacacg gaagcagtct aaagatgtga aaaccgtgtg tataagttag tttgcgtatt
     4201 gaaattaaaa gataaaaata cgatgattaa aaaataggca taagaaaaga taaacacagc
     4261 cggtgtttgc cggtgtgtgt atcttttgtg gaaaaacatc ttaatgtcat gtattttatg
     4321 gaaaataata acatgattaa aaaatagtca atcattatag tggattaaat ttaaatcagg
     4381 acaaggcgac gaagccgcag acagtacaga tagtacggca aggcgaggca acgccgtact
     4441 gatttaaatt taatccacta taaggttcag gtaagcggct gcaaccgtca atgtctgaaa
     4501 agaggcagtg ctgtttaagc atggaaagcc ggataaaaaa aactgcctcc gtttccggag
     4561 gcagttcgtg tgcggataaa accttacaga ccgctcaaac gggcagtgtc gtgggcaatc
     4621 atcagctctt cgttggtcgg aatgaccacg gcaacggctt tgctgtcggc agtggtaatc
     4681 acgccggcgt tgccgaagcg ggctttcagg ttggcttctt ggtcgatgtt cagaccgagg
     4741 aagcccaagt agccgatcac gcgttcgcgg atgatgtcgg agttttcgcc gatgccgccg
     4801 gtaaagacca gtgcgtccaa accgcctgcg gcaaccgcca tactgccgat gtatttggca
     4861 aggcggtaga taaacatatc caaggccaat ttcgcgcctt tatgcccctt ggcggcttct
     4921 tcttcaatgg tgcggcagtc gttggacagg ccggaaatgc cgagcagacc ggattttttg
     4981 ttcagcattt cagtgatttg ggcgatggtc atattggcgt tttcggcgag aaagccgaat
     5041 acggaaggat cgatgtcgcc gctgcgcgta cccattacca gcccttccag cggggtcagg
     5101 cccatactgg tgtcgcgcga ttcgccgttg gcgacggcgg taatggacgc gccgttgccc
     5161 aagtgggcaa tgaccatacg caggtctttt ttgtctttgc cgaggaagcg cgcggtttcg
     5221 tcggcgacga agcggtagct ggtaccgtgc gcgccgtaac ggcgcaggcc gtatttttca
     5281 tacaactcct gcggaacggc gtatttgtag gcgacttcgg gcatggtttg gtggaaggag
     5341 gtatcgaata cgacgacgtt gggcaggtct ttgaaaatgc tttgcgcggc acgcaggccc
     5401 aagaggtggg cggggttgtg caggggggcg agcgggatgc atttttcgat gccggcaatg
     5461 acttcgtcgt caacgaggat ggattcgctg tacagttcgc cgccgctgac gacgcggtgg
     5521 ccgatggcgc cgatgcggct gtcgaggccg tgggctttga gttcttccat cagggcttcg
     5581 accgcgccgg tgtggttggg atgtgcggac agatcgactt tgtgtttttc gccgtttact
     5641 ttgaatgtga tgtaggcatc gggcaggttg agtttttcgg caaggcagct gagcaggact
     5701 tcgccgctgc cgttatccag gaccgcgcct ttgagggacg agctgccgca gttcaaaacc
     5761 aagatcaatt tttgggacat tttcttactc cggaaagttt cagacggcat tggaatcgga
     5821 cacggatact aaccggattc gtgccgaatc cgttttgcct tcctgggcgg gaaagtagtg
     5881 gggccgtctg aaaaggttga taaaagaagc aggctattct agcaaaaaat ctttgcaatt
     5941 gcttggctta atcgggcgtt tgcgtgaaaa tggcggaagt cgggcatttt gacggaaaaa
     6001 agggggatat gcggtttgcc gatgttttcg gctgggggag ggagaatttc tttgcattct
     6061 tcccgtccaa actggtacat tcgccctgtt tttagttggt gtcgtctgaa aaaaggcggg
     6121 tgggaaattt atgcattatt tcagtattca tgaccaatcg ggacggcata taggcttttt
     6181 catcctgctt gccgacgacg aatcggaagc acggccgcaa agcgggcgtt ttgccgtcaa
     6241 acttgaaggc ggaatggaaa atcatgtcct gtcgccgttc ggtcagacgg aaatccccca
     6301 atattggcgc gtggtcaaag accgtatcga gctgtttttt gacgaagctc ccgtcggaac
     6361 tttgcgtaac gaatatctga ccgtgtcggg gcagactttt gttttgaacg atttgacagg
     6421 gaatatgtga tggaaagcat gtttatattg gtgcccatca gcattatttt ggcgtttgtc
     6481 atcggctggt ttttttggtg gtcgggcaaa aacgggcagt ttgacgactt ggaagggccg
     6541 gcgcaccgca tcctgatgga tgatgattcg acaagtaaac tgattgaaaa agagagggaa
     6601 aacgatgtac gctaaaaaag gcggtttggg actggttaaa agccgccgtt tcgcacctct
     6661 tttcgctacg cagtttctcg gcgcgttcaa cgacaatgtg ttcaaaaccg cgctgtttgt
     6721 gatgattggg ttttacggtt tggggcaaaa cggcttcctg cctgccggac agatgttgaa
     6781 cttgggcgcg ttgttgttta ttttgccgta tttcctgttt tcctcgctgt cggggcagtt
     6841 gggtaacaaa ttcgacaagg ccgttttggc gcgttgggtc aaggtgctgg aaatgatcat
     6901 tatggcggtg gcggcatacg ggttttatat ccggtctgcc ccgctgcttt tggcgtgtct
     6961 gttttgcatg ggcgcgcaat cgacgctgtt cgggccgctg aaatacgcca tcctgcccga
     7021 ttatctcgac gacaaagagt tgatgatggg caacagcctg attgaatcgg gtacgtttgt
     7081 cgccatcctg ttcggtcaga ttttgggaac ggcggtggca ggtgtaccgc cttatattgt
     7141 cgggatactg gttttgctgg tcgccgtcgg aggcacggtc ggcagcctgt ttatgccgtc
     7201 cgtccccgcc aaggctgccg atacccaaat tgagtggaat attgtccgtg gcacaaaatc
     7261 cctgcttcgt gaaacggtgc ggtacaaacc cgtctttacc gctattatcg gtatttcgtg
     7321 gttttggttt gtcggcgcgg tttataccac gcaactgccg acctttaccc aaatccatct
     7381 gggcggcaac gacaatgttt tcaacctgat gcttgccctg ttttccatcg gtattgccgc
     7441 cggttcggta ctgtgtgcca agttcagcag ggaacgcctg atgttggctt gggtaacggt
     7501 tggtgcgttg ggtttgacgg tttgcggcct ggttttggtg tggctgacgc acggacaccg
     7561 ttttgaaggg ctgaacggca ttttttggtt tttatcgcaa ggatgggcat atcccgtgat
     7621 ggcggtgatg acgctgatcg gctttttcgg cggatttttc tccgttccgc tctatacctg
     7681 gctgcaaacc gccagtagcg agactttccg cgcccgcgcc gttgccgcca acaatatcgt
     7741 taacggtatt tttatggttt ccgccgccgt tttgagcgcg gtgttgctgt ttttgtttga
     7801 cagcatttcc ttgttgtatc tgattgtcgc tttgggcaat attccgttgt cggtattttt
     7861 gattaagcgc gaaaggcggt ttttaggcgc ggcggcaatc aggaaaaaac cttgaatgcc
     7921 gtctgaaaaa attgtcccca aaatacacaa tccgcctgcc caatgttgtg aacacactgt
     7981 gaataagtgg gtttgtgcat tgaaatgaaa acagaaaaat atattgctta aaaaatagtc
     8041 agcagatgga aaatttgaag aaagaagcag acatgattca acgccaaatc atcctcgata
     8101 ccgaaaccac cggtctgtat gccgacggcg gcgaccgctt ggtcgagttt gccggtttag
     8161 aaatggtcaa ccgccaaatg accgacaaaa acctgcacct ctatgtccac cccgagcgcg
     8221 atatgcctga agaggcggcg agggtgcacg gtctgacgat agaggttttg gaagggaaaa
     8281 acgcaccgcc ttttgcagag gtcggcaggc agattgccga tttcctgcgc ggtgcggaac
     8341 tgattatcca caatgccaaa ttcgacgtgg gcttcctcaa tatggagttc cgccggatgg
     8401 ggttgccgac cgttgaggaa ctcggctgta ccgttaccga taccctggcg atggcgcgcg
     8461 aaatgttccc cgggcagaaa gccagcctgg atgccctgtg caaccgtttt tccgtcgacc
     8521 gcagcaagcg cgtcctgcac ggcgcattga tcgactgcga acttttgggc gaagtctatc
     8581 ttgctatgac gcggcggcag ttcgacctga tgggtgcggc cgcagaggaa aaaatggaaa
     8641 ccaaacccgt ggtgcatacc gaaaccaaac gcagcggcaa actgaaagtc atcagggcgg
     8701 acgaaaacga gttggcggcg cacgggcaat atttggacgg cttgggcgaa gcctgtatct
     8761 ggcgcaagga agccgtgccg tctgaaaacg gcgggacgga cgcatgaagc gcaaaaatat
     8821 cgcgctgatt cccgccgccg gcatcggggc gcgtttcggt gcggacaaac ccaagcaata
     8881 tgtcgaaatc ggaagcaaaa ccgttttaga acatacgctt gggatttttg aacggcatga
     8941 gggcgtcgat ttgaccgtcg ttgtcgtctc gcccgaagac acgtttgccg ataaggttca
     9001 gacggcattt ccacaggttc gggtgtggaa aaacggcgga cagacccgcg ccgaaaccgt
     9061 ccgaaacggt gtggcaaaat tgttggaaac cggtttggcg gcggaaaccg acaatattct
     9121 ggtacacgat gccgcgcgtt gctgcctgcc gtctgaagct ttgacgcggt tgatagaaca
     9181 ggcgggcaac gctgccgaag gtgggatttt ggcaattccc gttgccgata cgctcaagcg
     9241 cgcggacggt gggaacatta gtgcaaccgt cgagcggacg agcctttggc aggcacaaac
     9301 gccgcagctt ttccgcgccg ggctgctgca ccgcgcattg gctgcggaaa acttggacgg
     9361 cattaccgat gaagcgtccg ccgtcgaaaa attgggcatc caccctttgc tggtgcaggg
     9421 cgacgcgcgc aatttgaaac tgacgcagcc gcaggacgca tacatcgtca ggctgctgct
     9481 cgatgccgtc tgaacttcaa ttcaaaacat caggaacaca aacgatgacg aacatccgta
     9541 tcggacaggg ctacgatgtc caccaactga ccgaaggcag aaagctgata cttggcggag
     9601 ttgaaatccc atttgaaaaa gggctgctcg gacactccga tgccgatgcg ctgctgcacg
     9661 ccgttaccga cgcgctgctc ggtgcggcag gtttgggcga tatcggcagc catttccccg
     9721 acaccgccgc agagttcaaa gatgcggaca gccgcgtcct tttgcgtgcg gcgtatcaaa
     9781 gcgttcaggc gcagggttgg caggcggtca atgtcgatac gaccgtgatt gcacagaaac
     9841 ccaaactcgc gccgcatatt ccgcaaatgc gtgccaacat cgccgccgat ttgggcatag
     9901 acatttcgtg cgtcaacatc aaaggcaaaa ccaacgaaaa actcggttat ctcgggcgca
     9961 tggaaggcat agaggcgcag gcggcggtat tgctggtacg gatttgaacg cggcgggcag
    10021 gacgtgcaaa aaaatgttaa gatggcggct gtttgttgat acggtttccc aaaggacaaa
    10081 aatatgacga cacaagacga actcaagcgc atcgccgccg aaaaagcagt cgaattcgta
    10141 cccgaaaacg aatacatcgg catcggtacc ggctcgacca tcaacttttt catcgaagcc
    10201 ttgggtaaga gcggcaaaaa aatcaaaggc gcggtatcta cttccaaaaa atccagtgaa
    10261 ctgcttgccc aatatgatat tcccgtcgtt tccctgaacg aagtatcggg gttggcggtc
    10321 tatattgacg gtgcggatga agtgaaccac gccctgcaaa tgattaaagg cggcggcggc
    10381 gcacacctca acgaaaaaat cgtcgccagc gcatcagaaa aattcgtctg cattgcggac
    10441 gaaagcaaat atgtttcacg tttgggcaaa ttccctctgc ccgtggaagt cgtcgaaagc
    10501 gcgcgttccc ttgtttcgcg caaactgctc gctatgggcg gacagcctga attgcgtatc
    10561 ggctacacca ctttttacgg caaccaaatc gtcgatgtcc acggcttgaa tatcgacaaa
    10621 ccgctgatga tggaagacga aatcaacaaa atcaccggcg tactcgaaaa cggaatattc
    10681 gcccgcgatg ccgccgatgt gttgattttg gggacggaag agggtgcgaa agtcatctat
    10741 ccctgccaag ggtaatcctg acgttaagat gccgtctgaa atccggttca gagatgttca
    10801 gacggcatcg gcatttgaaa aatatgcaga ttaaaaaaat catgaaatgg cttcccgtcg
    10861 ccctgtcgct tttgggtgcg ttgggttata cggggtacgg cagcgaggcg gtgcggacgg
    10921 cggttgccgt actcgacgta ctcggcgcgg caggggacgc gggttccgac gcgcccgccc
    10981 gccgccgagc atcggcgaaa tccggccacc gctacacagg cacggtgtcc aaagtctatg
    11041 acggcgacac ccttcacgtt atcgacggcg acggcgcgaa acacaaaatc cggatggcgt
    11101 atatcgacgc gccggagatg aaacaggctt acggcacgcg ttcgcgcgac aacctgcgcg
    11161 cggcggcgga aggcaggaaa gtcagcgtgc gcgtgttcga caccgaccgc taccagcgcg
    11221 aagtggcgca ggtttctgtc ggcaaaaccg atttgaacct gatgcaggtg caggacgggg
    11281 cggcgtggca ttataaaagt tatgctaaag aacagcagga taaggcggat tttgccgatt
    11341 atgccgacgc tcaaattcag gcggaaaggg aacgcaaagg attgtggaaa gctaaaaatc
    11401 cgcaagcgcc gtgggcgtac cgccgggcag gcaggagcgg cgggggcaat aaggattgga
    11461 tggatgccgt gggcgaatgg ttgggcattt ggtaaagaca gcgcacggct ttgaacggca
    11521 aatgccgtct gaaaaccgcg cgccctgcat ttttgcggag acgcgcaacc gccgtctgcc
    11581 gcgataaaaa agttcaggcg gcggttttta cggtaaaatg gcggattatt ttgcaacggc
    11641 ggcagttccg ccggtttttg atacggacgg tatatggatt ttcgttttga cattatttac
    11701 gaataccgct ggatgttcct ttacggcgca ctgacgacct tggggctgac ggtcgtggcg
    11761 acggcgggcg gttcggtatt gggtctgttg ttggcgttgg cgcgcctgat tcacttggaa
    11821 aaagccggtg cgccgatgcg cgtgctggcg tgggcgttgc gtaaagtttc gctgctgtat
    11881 gttacgctgt tccggggtac gccgctgttt gtgcagattg tgatttgggc gtatgtgtgg
    11941 tttccgtttt tcgtccatcc ttcagacggc attttggtca gcggcgaggc ggcaatcgcg
    12001 ctgcgtcgcg gatacgggcc gctgattgcc ggttctttgg cactgatcgc caactcgggg
    12061 gcgtatatct gtgagatttt ccgcgcgggc atccagtcta tagacaaagg acagatggag
    12121 gcggcgcgtt ctttggggct gacctatccg caggcgatgc gctatgtgat tctgccgcag
    12181 gcattgcgcc gcatgctgcc gcctttggcg agcgagttca tcacgctctt gaaagacagc
    12241 tcgctgctgt cggtcattgc tgtggcggag ttggcgtatg ttcagaatac gattacgggc
    12301 cggtattcgg tttatgaaga accgctttac accgtcgccc tgatttatct gttgatgacg
    12361 actttcttag gctggatatt cctgcgtttg gaaaaacgtt acaatccgca acaccgctga
    12421 ttggagtcat atcaacaaaa agctgcccgg gtattcattt gaggcagctt ttttgtggca
    12481 aatttat
//
LOCUS       DAXIFS010000042        12361 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.042, whole genome shotgun sequence.
ACCESSION   DAXIFS010000042 DAXIFS010000000
VERSION     DAXIFS010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12361
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.042"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1005
                     /locus_tag="ACFOCA_000848"
     CDS             52..1005
                     /locus_tag="ACFOCA_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HFC6987591.1"
                     /translation="MTHTVHLHLEETDNLALQRLCGSFDNNLDLLAKALDIHISRRFE
                     HFTFNGAFAHAGKRALLKLLETAQTRDLNDGDIRLAAVEAQTEDAGHQEKNHDHAYYF
                     RTKRGSIGGRTPRQNGYIRALLNHDIVFGLGPAGTGKTYLAVAAAVDAMEKHQVERII
                     LVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYDLMGFDRVSKLIEKGLIEIAPLA
                     YMRGRTLNGAYIILDEAQNTTPEQMKMFLTRIGFGAKAVITGDTSQIDLPKNIKSGLK
                     DAREKLHNVEGLYFHTFTGEDVVRHPLVQKIVEAYESAEHD"
     gene            complement(1109..1432)
                     /locus_tag="ACFOCA_000849"
     CDS             complement(1109..1432)
                     /locus_tag="ACFOCA_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987592.1"
                     /translation="MKKCILGILTACAAMPAFADRIGDLEARLAQLEHRVAVLESGSN
                     TVKIDLFGSNSTMYVCSVTPFQKTFEASDRNEGVARQKVRQACNRETSAMFCEDEAIR
                     CRKFD"
     gene            complement(1605..2966)
                     /locus_tag="ACFOCA_000850"
     CDS             complement(1605..2966)
                     /locus_tag="ACFOCA_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HFC6987593.1"
                     /translation="MLKKWLNKMLPSGRSSKKAESKTVIPAERHNIRAEMLSFAAENV
                     IRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV
                     HVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKE
                     EILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTAPIAE
                     SICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGK
                     MTVLALKNTDERLRADKSVSVGFVLAALMWPELERHWKSNLQQGLKPAPALSDAINTM
                     RETVERGWGVPQRFSATMREIWMFQPQFENRKGARPHKLFAQARFRAAYDFLLLRAET
                     GNADRALAEWWTAFQTASQEQRTEMTKNEAAARHEKNEGQAKKRRRRRRKPKPKVEGT
                     DWE"
     gene            complement(3327..5027)
                     /gene="recJ"
                     /locus_tag="ACFOCA_000851"
     CDS             complement(3327..5027)
                     /gene="recJ"
                     /locus_tag="ACFOCA_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFC6987594.1"
                     /translation="MSVKIQTRSINTDVFNHLLTAGADPLIARLCASRGVQSPAELDD
                     KLAALLPYQTLTNCEAAAGRLADAVGRKEKILIVADYDADGATACAVGLDGLAAMGAK
                     VDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVDNGIASIAGVARAQALGLDVIVTD
                     HHLPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFYVLTALRAELRRRNYFSDGLKEP
                     NLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSGKMRPGIRALFEVARRDWRKA
                     QPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQELAAQLNNLNIERREIEQSM
                     LQDALNAFPETLPSGQTTLVAYRDDFHQGVVGIVASRLKDRFYRPTIVFAPADNGEVR
                     GSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILEHNIPAFQTTFEEAVRE
                     MVCEDDLSQTFITDGSLPACDITLEQAQNLARHVWGQGFAPPSFTDEFHVVRQQPLGA
                     EGKHKKVWLQKDGCEFEAMFWRCSEDIPEYIRTVYRPVANEWRNNLELQLYIDYWEAV
                     "
     gene            complement(5079..5813)
                     /locus_tag="ACFOCA_000852"
     CDS             complement(5079..5813)
                     /locus_tag="ACFOCA_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987595.1"
                     /translation="MLFRKTTAAVLAATLMLNGCTLMLWGMNNPVSETITRKHVDKDQ
                     IRAFGVVAEDNAQLEKGSLVMMGGKYWFVVNPEDSAKLTGILKAGLDKPFQIVEDTPS
                     YARHQALPVKLESPGSQNFSTDGLCLRYDTDRPDDIAKLKQLEFEAVELDKQTIYTRC
                     VSAKGKYYATPQKLNADYHFEQSVPADIYYTVTEKHTDKSKLFANILYTPPLFDTGCG
                     GRGTGFACGGSGCGRGCRPQMNSNAV"
     gene            complement(5860..6366)
                     /gene="yjgA"
                     /locus_tag="ACFOCA_000853"
     CDS             complement(5860..6366)
                     /gene="yjgA"
                     /locus_tag="ACFOCA_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HFC6987596.1"
                     /translation="MFEQEDEWVSKTQMKKQMNGLQDLGMELTKLSSDTLKKIGLDED
                     LYEAVVTYKKITSNGALKRQAQFIGRLMRDTDPAPIEAFLAKLRGDDAAHNAFLQRVE
                     RTRMELLADDGALTQFMSDFPHADAGKLRTLIRNTKKEQEQNKPPKNFRALFQELKTV
                     MENGDAEI"
     gene            6521..7852
                     /gene="pmbA"
                     /locus_tag="ACFOCA_000854"
     CDS             6521..7852
                     /gene="pmbA"
                     /locus_tag="ACFOCA_000854"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HFC6987597.1"
                     /translation="MLFNHTASELLDLCRRTLDLAKAAGATAAEADFSESIGQSVSVR
                     LGEIEQIEFQQDKSLDITVYVGKRKGRAGTADFSEQALRDTVRAAADIARHTAEDGCA
                     GLADPELMAQHIGDPDLYHEWDLDTEAAVGFAKQCEQAALNEDERIENSEGAAVQTGH
                     YQYVYGNTHGFAAHRQGTHHSISCSVVAADENGMQRDYWYDSACRHPDMDSPETIGQT
                     AARRTLRRLGSRSIPTGSYPVLFDTTVSGGLIGHLVGALSGGALYRQSSFLIDSIGKK
                     VLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVEGYFLSSYSARKLGMQT
                     TGNAGGAHNLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSRGAAGFWVEN
                     GVIAYPVHEITVAGRLQDMYRDIVGVADDALRRSSNKIGSILIAGMTVAGS"
     gene            complement(8149..8352)
                     /locus_tag="ACFOCA_000855"
     CDS             complement(8149..8352)
                     /locus_tag="ACFOCA_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HFC6987598.1"
                     /translation="MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKE
                     GQRVSFDVTTGPKGKQAANIQAA"
     gene            8595..8897
                     /gene="clpS"
                     /locus_tag="ACFOCA_000856"
     CDS             8595..8897
                     /gene="clpS"
                     /locus_tag="ACFOCA_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HFC6987599.1"
                     /translation="MTAQHQSDTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEI
                     FMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI"
     gene            8899..11196
                     /gene="clpA"
                     /locus_tag="ACFOCA_000857"
     CDS             8899..11196
                     /gene="clpA"
                     /locus_tag="ACFOCA_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HFC6987600.1"
                     /translation="MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDASVPNV
                     LKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVETRPTLGFQRVMQRAMVHTQSAGK
                     AAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDEDDGNYSSDG
                     MDDDNENRAKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPL
                     LVGEAGVGKTALAEGLAHQIVNGGIPDALKDAEVYALDMGSLLAGTKYRGDFEARVKS
                     VLKQLEKIPHAILFIDEIHTIIGAGSTSGGTMDASNLLKPALAKGSLRCIGATTYDEY
                     RTIFDKDHALSRRFQKIDVVEPTVSETVQILRGLKPMFEAFHQVRYTQGALEAAAELS
                     ARYINERFLPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVSRIPEKTVSH
                     DDKQVLQFLGRDLKNMVYGQENAIDALVAAVKMSRSGLALPDKPIGSFLFSGPTGVGK
                     TEAAKQLAYSLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC
                     VLLLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSL
                     GFTAKRERGDEMQAINKLFTPEFRNRLDAIIPFAPLSEPIIVKVVDKFLLQLEHQLLD
                     KKVEAEFTSALHKYLAEKGFDPQMGARPMHRLIQEKIRKPLADELLFGKLSDGGFVRI
                     DWDAAKEEAVLKFKKSKVKIKTASA"
     gene            complement(11260..12264)
                     /gene="rfaD"
                     /locus_tag="ACFOCA_000858"
     CDS             complement(11260..12264)
                     /gene="rfaD"
                     /locus_tag="ACFOCA_000858"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFC6987601.1"
                     /translation="MTIIVTGAAGFIGSNIVKALNQRGITDIVAVDNLSKGEKFKNLA
                     ECEIAHYLDKHEFIRQVREHILPYQNIEAVFHQGACSDTMNHDGLYMMENNYQYTLDL
                     LNWCQDERIPFLYASSAAVYGKGEIFREERELEKPLNVYGYSKFLFDQVLRRRMKEGL
                     TAQVVGFRYFNVYGQHEQHKGRMASVTFHHFHQYREHGYVNLFGSNDGYGNGEQTRDF
                     VSVEDVAKVNLYFFDHPELSGIYNLGTGRSQQFNELAAATVNACRAAEGKPEMSLKEL
                     VEEELIRYIPFPDALKGKYQSFTQADITKLREAGYKEEFFDVKSGVDRYVKWMLENLA
                     "
BASE COUNT         2927 a         3542 c         3131 g         2761 t
ORIGIN      
        1 taatccacta tagattaaaa tcacacaata tccaactatt cggaccttca tatgacacat
       61 accgtccacc tgcatttaga agaaaccgac aacttggcgt tgcagcgtct gtgcggttct
      121 tttgacaaca accttgattt acttgctaaa gcactcgata tccacatcag ccgccgtttt
      181 gaacatttca ctttcaacgg cgcatttgca cacgccggca aacgcgcact gctcaaactc
      241 ttggaaacgg cgcagacgcg cgacctaaac gacggcgaca tcaggcttgc cgccgtcgaa
      301 gcccaaaccg aagatgccgg tcatcaagaa aaaaaccatg accacgccta ttatttccgc
      361 accaagcgcg gcagcatcgg cggcagaacg ccacggcaga acggctatat ccgcgcccta
      421 ctcaaccacg acatcgtatt cggtctcggg ccggcaggta cgggcaaaac ctatcttgcc
      481 gtcgccgccg ccgtcgatgc gatggaaaaa caccaagtcg aacgcatcat tttagtgcgg
      541 cctgccgtcg aagccggcga gaaactgggc tttctgcccg gagacctgac ccaaaaagtc
      601 gacccctacc tccgtccgct ttatgacgcg ctttacgacc tgatgggctt cgaccgcgtc
      661 agcaaactga ttgaaaaagg cctgattgaa atcgccccgc tcgcctatat gcgcggcagg
      721 acgctcaacg gcgcatacat catcctcgac gaagcgcaaa acaccacgcc cgaacaaatg
      781 aaaatgttcc tgacccgcat cggcttcggc gcgaaagccg tcattaccgg cgacaccagc
      841 caaatcgacc tgcccaaaaa catcaaatcg ggattaaaag atgcgcgtga gaaactgcac
      901 aacgtggaag ggctgtattt ccacaccttt accggcgaag acgttgtccg gcatcctctg
      961 gtgcaaaaaa tcgtcgaagc ctacgaatcg gcagaacacg actgacattc caatgccgtc
     1021 tgaaacccga tgcatggaaa tcgggcagag aaaaacggat acggaaacca agctccgtat
     1081 ccgtttcttt atccgtccaa ccgatacatc aatcgaattt tctgcatcgg attgcctcat
     1141 cttcgcaaaa cattgccgaa gtttcgcggt tgcacgcctg acgcactttc tgccgcgcca
     1201 cgccttcatt ccgatcgctt gcctcaaacg tcttctgaaa aggcgtaacg ctgcatacat
     1261 acatggtgga atttgaaccg aaaaggtcga ttttgacggt attgctgccg ctttccaata
     1321 cggcgacacg gtgttccaac tgcgccagac gtgcttccaa atcgccgatt ctgtcggcaa
     1381 atgcaggcat ggcggcacac gcggtcaaaa tgcccaaaat acattttttc atcaattttt
     1441 ccttgtttct tgaaccctac ccacccggac atcctttttc cgagaggcag ggtcagactt
     1501 tatttacggg gatgaatccc cttacaaatc aggataatac atagaacggc actttatgct
     1561 tcatcccatg tgttgaaact tcattgctcc ttgtctgttg acccttattc ccaatccgtt
     1621 ccctcaacct tcggcttggg tttgcgcctg cgacggcggc gttttttcgc ctgtccttcg
     1681 tttttttcgt gccgggcagc agcctcgttt ttggtcattt ccgtccgttg ttcctgcgat
     1741 gccgtctgaa acgccgtcca ccactcggca agggcgcggt ccgcattgcc ggtttcggcg
     1801 cgcaagagca ggaaatcata ggcggcacgg aaacgcgcct gtgcaaacag tttatgcgga
     1861 cgtgcgcctt tgcggttctc aaactgcggc tgaaacatcc aaatttcgcg catcgtggcg
     1921 gaaaagcgtt gcggcacgcc ccaaccgcgt tcgacggttt cacgcatcgt attgattgca
     1981 tcggacaggg cgggcgcagg tttcaaaccc tgttgcagat tgcttttcca atggcgttcc
     2041 aactcgggcc acatcagagc cgccagtaca aaaccgaccg aaaccgattt gtcagcacgc
     2101 agccgctcat cggtattttt cagggcaagc accgtcattt ttccggcgat gccgtctgaa
     2161 acgcgcaagg cattgagcag cggatggatg tcgtccggta tgtcaaatcc gttcaaacgt
     2221 ttcagacact cgcgcgcgtg ccctgaaaac agcagtttca tgatttcgtc aaacagcctc
     2281 gctaccggtt cgtgcttcag acggcatatc gattcggcaa tcggtgcggt ggtttcttcc
     2341 gacagctcaa agcccaattt gcccgacagg cggatggcgc gcaaaatcct gacagggtct
     2401 tcctgatagc gttcggcggc atcgccaatc ataaccagcc tgcgggcggc aacatcggca
     2461 atcccgttgt ggaaatccaa aatctcttct ttttcaggat cgtaatacaa ggcattgcag
     2521 gtaaaatcgc gccgcatcgc atcttcttcg atgctgccgt aggtgttgtc tttcatgatt
     2581 ctgccgtgcg cgttctgatg aaccttcgca ccgccgcgaa acgtcgttac ttcgataatc
     2641 tccgcaccgt tcatcacatg gacgatttga aaacgcctgc cgatgatgcg gctgcggcgg
     2701 aagagtttgt gcacctgttc gggcgtggca tcggttgcga catcgaaatc tttgggttcg
     2761 atgccgagca gcagatccct gaccgcgccg ccgaccacat aagcctgaaa ccccgcccct
     2821 ttcagacggc gtatgacgtt ttcggcggca aagctcaaca tttcggcacg gatgttgtgt
     2881 ctttcggcag gaatgaccgt tttactttcc gcttttttac tgctccgacc ggaaggcagc
     2941 atcttattca accatttttt cagcataaat attctaaccc gaagagcggc atctccacgg
     3001 gcaaccgtgt tcagacggca tcaggcggta cgattccgca agatgccgta accataaaca
     3061 aaaggcgtag aaactacgcc gtccgaatca cgccgccctc gcggcggcgg caacgcgcca
     3121 ttataacaga ttgcccttta aaaaaatcag accctgcttt tgtggcggag tctgaaattt
     3181 gatgcacctt atatattgcg tccctaagaa gggatgatta acaaaaatta acgcccttta
     3241 ctttcttttc cgattgggaa cattcccgtc gtacaaacag gcaaatgaag gaacagaaat
     3301 cacattcaaa cggcgttccg ccgcctctac accgcttccc agtaatcgat atacagctgc
     3361 aattcgagat tgttgcgcca ttcgttggca acggggcggt aaaccgtgcg gatgtattcg
     3421 gggatgtctt cgctgcaacg ccaaaacatc gcttcaaatt cgcagccgtc tttttgcagc
     3481 cagacttttt tgtgtttgcc ctccgcgccc aaaggttgct ggcggacgac gtggaactcg
     3541 tcggtaaagc tcggcggcgc gaagccctgc ccccaaacgt gacgggcaag gttttgcgcc
     3601 tgttccaacg tgatgtcgca ggcgggcagg ctgccgtcgg tgatgaaggt ttgcgacaaa
     3661 tcgtcttcgc acaccatttc gcgcacggct tcttcaaagg tcgtctgaaa cgcgggaatg
     3721 ttgtgttcaa gtatgctcaa acccgccgcc atcgcgtgtc cgccgaattt taaaatcaaa
     3781 tcgggatggc gtttggacac caagtccaaa gcatcgcgca ggtgcaggtt gggaatggaa
     3841 cgccccgaac cgcgcacttc gccgttgtcg gcaggcgcaa acacgatggt cggacgataa
     3901 aaacggtctt tgaggcggct ggcgacgata ccgaccacgc cttgatggaa gtcgtcgcga
     3961 tacgccacca aagtcgtctg acctgaaggc agggtttcag gaaaggcgtt cagcgcgtct
     4021 tgcagcatag actgctcgat ttcgcgacgc tcgatattga ggttgtttaa ctgagccgcc
     4081 agttcctgag cttcggaatc atctcgcgcc aacaggcagg cgatgccgac cgacatatcg
     4141 tccagccgtc cggcggcatt gatgcgcggg cccaacgcaa aacccatatc aaacggctgc
     4201 gccttgcgcc agtcgcgccg cgccacttca aacaaggcgc ggatgccggg gcgcattttg
     4261 cccgaacgca tccgtttcaa accttgcgac acgaggatgc ggttgttgtg gtcgagaggg
     4321 acgacatcgg caaccgtgcc gagtgcgacc aaatccaaaa gatcgcccag attcggctct
     4381 ttcaggccgt ctgaaaaata attgcggcgg cgcagttcgg cacgcaacgc cgtcaacaca
     4441 taaaaaatca cgcccacgcc cgccaagctt ttgctttgga aaccgcagcc tttttggttc
     4501 ggattgacga tgatgcagtc gggcacggta tcggcaggca gatggtggtc ggttacaatc
     4561 acatccaaac ccagagcctg cgccctcgcc acgcctgcga tgctggcgat accgttatcc
     4621 accgtaatca gcaaatccac gccctgcgcg gcagcgattt cggcaagttc gggcgttaag
     4681 ccgtagccgt gttcaaagcg gttgggcaca aggaaatcca cttttgcccc catcgccgcc
     4741 aaaccgtcca aaccgacggc acacgccgtc gcgccgtcgg catcgtagtc ggcgacaatc
     4801 aggatttttt ccttgcgccc aaccgcatcc gccaaacgtc cggcggcggc ttcgcagttt
     4861 gtcagcgttt gatacggcaa aagcgcagca agcttgtcgt ccaattcggc aggactttgc
     4921 acaccgcgcg aagcacaaag ccgggcgatt aaaggatcgg caccggcggt gagcaaatga
     4981 ttaaaaacgt cggtattgat ggatcgggtt tggattttga ctgacataac gtggggtttt
     5041 actgtgcgtg tgtgcttaaa atgccgtctg aaagcttttc agacggcatt gctgttcatt
     5101 tgcgggcggc atccacgacc gcacccagag ccgccgcagg caaagccagt accgcgcccg
     5161 ccgcatccag tatcaaaaag ggggggcgta tataagatat ttgcaaacag cttggatttg
     5221 tcggtatgtt tttcagtaac cgtgtaataa atatcggcag gcacactttg ctcaaaatga
     5281 taatcggcgt tcagtttttg cggcgtggcg tagtatttgc ctttggcaga gacgcagcgc
     5341 gtgtaaatag tctgtttgtc gagttcgacc gcttcaaact caagctgttt cagcttggcg
     5401 atgtcgtcag gcctgtcggt atcgtagcgc aggcaaaggc cgtcggtact gaaattctgg
     5461 ctgccgggcg attcgagttt gaccggcagg gcttggtggc gggcatagct cggggtatcc
     5521 tcaactattt ggaagggctt gtccagcccg gccttcaaaa tgcccgtcag cttcgccgaa
     5581 tcttcaggat tgacgacgaa ccagtatttt ccgcccatca tcaccaggct gcccttttcc
     5641 aattgggcat tgtcttcggc aaccacaccg aaggcgcgga tttggtcttt gtcaacgtgt
     5701 ttgcgggtga ttgtttcgct gaccgggttg ttcattcccc acaacatcaa cgtacagccg
     5761 ttcagcatca aggttgccgc caaaacggcg gcggtcgttt tacggaacaa cattttatcc
     5821 tccaatctaa ataacggcgg atgtcgtctg aaaatatgcc taaatttccg cgtccccgtt
     5881 ttccatcacg gttttcaact cttgaaacag ggcgcggaaa ttttttggtg gtttgttttg
     5941 ctcctgctct tttttggtat tgcggatgag tgtcctcagc ttgcccgcgt ccgcatgcgg
     6001 aaaatccgac ataaactgcg tcaacgcgcc gtcgtctgcc agcagctcca tccgcgtccg
     6061 ctccacacgt tgcaaaaagg cgttgtgcgc cgcatcgtcg ccgcgcagct tggcaagaaa
     6121 tgcctcgatg ggcgcgggat cggtatcgcg catcagtctg ccgataaatt gcgcctgccg
     6181 cttgagcgcg ccgttggatg tgattttttt ataggtaacg acggcttcgt acaaatcttc
     6241 gtccaagccg atttttttca acgtgtcgct tgagagcttg gtcagctcca tacccaaatc
     6301 ctgcaaaccg ttcatctgct ttttcatttg ggttttgctg acccattcgt cttcttgttc
     6361 aaacatcttc attctcaaat tttatccgac gggcgcattt taacagaatg attccgcgtt
     6421 cagacggcat tttgcaccgt ccgccctgca aacggcacgc ttttgcccct gccgcccgaa
     6481 acggttaaaa tgccgcaacg ctccaccaag aaagatttct atgctgttca accacaccgc
     6541 ttccgaactt ctcgacctct gccgccgcac gctcgacttg gcaaaagcag cgggcgcgac
     6601 cgccgccgaa gccgatttca gcgaatccat cggacaaagc gtcagcgtgc ggctgggcga
     6661 aatcgaacaa atcgagttcc agcaggacaa gtcgctggac attaccgttt acgtcggcaa
     6721 acgcaaaggc cgcgctggca ccgccgattt ctccgaacaa gccctgcgcg acaccgtccg
     6781 cgccgccgcc gacatcgccc gccacaccgc cgaagacggt tgcgccggac ttgccgaccc
     6841 cgagttgatg gcgcaacaca tcggcgaccc cgacctttac cacgaatggg atttggatac
     6901 ggaagccgcc gtcggctttg caaaacaatg cgaacaagcc gccctgaacg aggatgagcg
     6961 catcgaaaac tccgaaggcg cggcggtgca aaccggccat taccaatacg tttacggcaa
     7021 cacccacggt tttgccgcac accggcaagg cacgcaccac agcatttcct gcagcgtcgt
     7081 tgccgccgac gaaaacggga tgcagcgcga ctactggtac gattccgcct gccgccatcc
     7141 ggatatggac agccccgaaa ccatcggtca aaccgccgcc cgccgcactt tgcgccgact
     7201 cggcagccgc agcatcccga caggcagcta ccccgtcctc ttcgatacca ccgtttcggg
     7261 cggccttatc ggacacctcg tcggcgcact ctccggcggc gcgctctacc gccaaagcag
     7321 tttcctgatc gacagcatcg gcaaaaaagt cctgcccgat ttcctcaacc tgcgcgaaga
     7381 accgcacatc ccccgctctt tccgcagcag ctattttgat gcggaaggcg ttgccaccgc
     7441 accgcgcttc gtgattcaaa acggcattgt cgaaggctat ttcctcagca gttacagcgc
     7501 gcgcaaactc ggtatgcaga ccacgggcaa cgccggcggc gcgcacaacc tgtatttgaa
     7561 ccatacgcac gaaacgcaat ccgacctgct gaaagaaatg gggacgggat tattggttac
     7621 cgaactgatg ggacagggcg cgaacaccat taccggtgac tactcgcgcg gcgcggcggg
     7681 tttttgggtg gaaaacggcg tgattgccta ccccgtccac gagattaccg tagccggacg
     7741 cttgcaggat atgtaccgcg acattgtcgg cgtggcggat gacgctttgc ggcgttcgtc
     7801 caacaaaatc ggctcgattc tgattgcggg gatgacggtt gccggaagct gaacgccctg
     7861 ccgatgccgt ctgaagacga aggcagcacg ttttgccccg tgcctgcccg tttgccgttt
     7921 tatgccgcac cgccttttgc cgacaacatt gcacattttt tcatcagcac tgattttccc
     7981 ttatccgtca aaatactaag ccacttgtcc acaacagggt acacacaagt tcaggataag
     8041 gcgtgcgggg attggggttt ttccgccgcc ggcaaaacgg cagacaaaaa cggcgggaca
     8101 ttgcctgtcc cgccgttttc aaatatacat ttgaccgtac atcaggaatt aagcagcctg
     8161 aatgttggcg gcctgtttgc ctttagggcc ggtggttacg tcgaaagaga cgcgttggcc
     8221 ttctttcagg gttttgaaac cttccatatt gattgctgag aagtgagcga acaaatcttc
     8281 gccgccttca tcaggcgtga tgaaaccaaa acctttagcg tcgttaaacc attttacgat
     8341 accggttgcc attagaaact tcctatactc aaaaattaac aaaatcagca aaacaaggca
     8401 tacggcaaac cgagccgtct ggcgttcctt ccagcttgat atactcggcg gatgcccaat
     8461 cctgcttaac cgtcttttta catttgttaa gacaaaacgt caagctatgt tttcaaaaaa
     8521 gtgggaaaat aggcaaaagt accgaaaata caacaaaaat gccgtctgaa cgcggctttc
     8581 aaatgggaca cactatgacc gcgcaacacc aatccgacac gctcttgcac cgtctgaaca
     8641 ccctgccgcc gaaacgttac ggcgttttcc tattgaacga cgattacacc acgatggaat
     8701 ttgtcgtcga aatcctgacc gaaatcttta tgctcggaca agaacaggcg gtagcggtaa
     8761 tgctcttggt tcatcacgaa ggcaaaggcc tgtgcggcac ttacacgcgc gatattgccc
     8821 aaaccaaaca acaacaagtc atgcagcggg caaaagccga agggcatccg ctgcaatgta
     8881 ttgtcgagga gatttaatat gcttgcaccc gaattggaac agattttgca gcagctttac
     8941 cgcgaggcgc gtaaggctca ttatgaattt atcagcctcg agcatctgct tttggtactc
     9001 atcgaagaag atgcctccgt gccgaacgtc ttaaaactat gcggcgcgga tttgaaagtg
     9061 gtgtccgaac agctcgccgc cagcgttgcc gaaaacaccc ccctgattcc cgaacacctt
     9121 ttagacacgg tcgaaacacg gcccacgctc ggcttccaac gcgtgatgca acgggcgatg
     9181 gtgcataccc agtctgccgg aaaagccgca gtcgaaccgt tggacgtttt ggtcgcgctg
     9241 atgagcgaaa ccgacagcca caccgtctat ttcctcaagc tgcaatcggt tacgcgtttt
     9301 gaagttttgc gctgtattgc ccacggctct cccgatgaag atgaagatga agacgatggc
     9361 aactattctt cagacggcat ggacgacgat aatgaaaacc gcgccaaacc gggcaaaaac
     9421 cctttatcgg cgtacaccgt caacctcaac gccgaagtca aagccggccg tatcgaccct
     9481 ttgattggtc gcaaacacga aatggaacgg ctggtgcaaa tcctatgccg ccgccgcaaa
     9541 aacaatccgc ttttggtcgg cgaagcgggc gtgggcaaaa ccgcgctggc ggaaggtttg
     9601 gcacatcaaa tcgtcaacgg cggcattcca gacgcgctca aagatgccga agtgtacgcg
     9661 ctggatatgg gctcgctgtt ggcgggcacg aaataccgcg gcgactttga agcgcgggtc
     9721 aaatccgtct tgaaacagct cgaaaaaatc ccgcacgcca ttttgtttat cgacgaaatc
     9781 cacaccatca tcggcgcggg cagcaccagc ggcggcacca tggacgcgtc caacctgctc
     9841 aaacccgcgc tggcaaaagg ttcgctgcgc tgcatcggcg cgaccaccta cgacgaatac
     9901 cgcaccattt tcgacaaaga ccatgcctta agccgccgct tccaaaaaat cgacgtggtc
     9961 gaacccaccg tttccgaaac cgttcaaatc ctgcgcggct tgaaaccgat gtttgaagcc
    10021 ttccaccaag tccgctacac tcaaggcgca ctcgaagccg ccgccgaact ctccgcacgc
    10081 tacatcaacg agcgtttcct gcccgacaaa gccatcgacg taatggatga agcaggcgcg
    10141 gcgcaacgga ttctgcccaa atccaaacag aaaaaagtca tcggcaaagc acaaatcgaa
    10201 accgtcatcg ccaaagtttc gcggattccc gaaaaaaccg tgtcgcacga cgacaaacaa
    10261 gtgctgcaat tcctcggtcg cgatttgaaa aacatggttt acggtcaaga aaacgccatc
    10321 gacgcgctgg ttgccgccgt caaaatgtcg cgttccggcc ttgccctgcc cgacaaaccg
    10381 ataggcagct tcctcttctc cggcccgacc ggcgtgggca aaaccgaagc cgccaaacag
    10441 cttgcctact cgctgggcgt accgctgcaa cgctttgata tgtccgaata catggaacgc
    10501 catgccgtat cgcgcctcat cggcgcgcca ccgggctacg tcggctttga acaaggcggc
    10561 cttttgaccg aagccgtcaa caaacagccg cattgcgtat tgctcttgga cgaaatcgaa
    10621 aaagcccacc ccgacatttt caacgtcctc ctgcaagtca tggacgcagg caaactgacc
    10681 gacaacaacg gcaagagtgc cgatttccgc aacgtcatcc tgattatgac caccaacgca
    10741 ggcgcggaaa gcctcagccg ccccagcctc ggctttaccg ccaagcgcga acgcggcgac
    10801 gaaatgcagg caatcaacaa gctcttcacg cccgagttcc gcaaccgctt ggacgcgatt
    10861 atcccgtttg cacccttgtc cgaacccatc atcgtcaaag tcgtggacaa attcctgctc
    10921 cagctcgaac accagctcct cgacaaaaaa gtcgaagccg aattcacgtc ggcattgcac
    10981 aaatatctgg cggaaaaagg tttcgacccg caaatgggcg cgcgcccgat gcaccgcctg
    11041 attcaggaaa aaatccgcaa accgctcgcc gacgaactcc tgttcggcaa actatccgac
    11101 ggcggcttcg tgcggataga ctgggatgcg gcaaaagaag aagccgtgtt gaagtttaag
    11161 aaaagcaagg tcaaaataaa aaccgcctcc gcgtaaaatc aaaaatgccg tctgaaattt
    11221 cagacggcat tttctttcaa acaaaattac caatcgtgtt taagccaaat tttccagcat
    11281 ccatttgacg tagcggtcga cgcctgattt gacatcgaaa aattcttcct tatatccggc
    11341 ttcgcgcaat ttggtgatgt cggcttgggt gaagctctgg tatttgcctt tgagtgcgtc
    11401 ggggaagggg atgtagcgga taagttcttc ttccaccagc tctttcaagc tcatttcagg
    11461 cttgccttcg gcggcgcggc aggcgttgac ggtggcggcg gcgagttcgt taaactgttg
    11521 gctgcggccg gtaccgaggt tgtagatgcc ggaaagttcg ggatggtcga agaagtagag
    11581 gttgactttg gcaacgtctt cgacgctgac aaagtcgcgg gtttgttcgc cgttgccgta
    11641 accgtcattg ctgccgaaca ggttgacgta accgtgttcg cggtattggt ggaaatggtg
    11701 gaaggtgacg gatgccatgc ggcctttgtg ttgttcgtgt tgtccgtaaa cgttgaagta
    11761 gcggaagccg acgacttggg cggtgagacc ttctttcatg cggcggcgca atacttggtc
    11821 gaacaggaat ttggagtagc cgtacacatt aagcggtttt tcgagttcgc gctcttcgcg
    11881 gaagatttcg cctttgccgt aaaccgccgc actggaggca taaaggaagg gaatgcgttc
    11941 gtcctgacac cagttcaaca aatccagcgt gtactggtag ttgttttcca tcatatacaa
    12001 accgtcgtgg ttcatcgtat cggaacacgc gccttgatgg aaaacggctt cgatgttttg
    12061 ataaggtaaa atgtgttccc tcacttggcg gatgaattcg tgtttgtcga gataatgggc
    12121 gatttcgcac tcggcaaggt ttttgaattt ttcgcctttg ctcaaattat cgacggcgac
    12181 gatgtcggta ataccgcgtt gattaagtgc tttgacgatg ttgctgccga taaagccggc
    12241 cgcgcctgtt acgatgatgg tcatattcgg tttcctttgt tttgagtaaa attaataaac
    12301 ttagttacaa gaaatcatcg atattgtcct gaaacacaaa tttgcgatga tattccaaat
    12361 a
//
LOCUS       DAXIFS010000043        12251 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.043, whole genome shotgun sequence.
ACCESSION   DAXIFS010000043 DAXIFS010000000
VERSION     DAXIFS010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12251
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.043"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(318..425)
                     /locus_tag="ACFOCA_000859"
     CDS             complement(318..425)
                     /locus_tag="ACFOCA_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HFC6987602.1"
                     /translation="MPSETLPIVGMWFQTVFVLFSVYSAKVGMVVFIVD"
     gene            complement(439..891)
                     /gene="rplI"
                     /locus_tag="ACFOCA_000860"
     CDS             complement(439..891)
                     /gene="rplI"
                     /locus_tag="ACFOCA_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFC6987603.1"
                     /translation="MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANM
                     KEFEVRRAELEAKQAEILADARVRQEKLDGQTVTVAQKAGVDGRLFGSVTNADIAAAI
                     VAAGIEAVKANVRLPNGPLKAVGEYEVEVALHTDAVAKITVAVVAATE"
     gene            complement(908..1138)
                     /gene="rpsR"
                     /locus_tag="ACFOCA_000861"
     CDS             complement(908..1138)
                     /gene="rpsR"
                     /locus_tag="ACFOCA_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009120066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFC6987604.1"
                     /translation="MARQSFKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPAR
                     ITGTKAFYQRQLAVAVKRARFLALLPYTDQHK"
     gene            complement(1145..1447)
                     /gene="priB"
                     /locus_tag="ACFOCA_000862"
     CDS             complement(1145..1447)
                     /gene="priB"
                     /locus_tag="ACFOCA_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030894 - replisome [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HFC6987605.1"
                     /translation="MGFNNLVSLAALIEKVFPIRYTPAGIPVLDIILKHESWQEENGQ
                     QCLVQLEIPARILGRQAEEWQYRQGVYVHVEGFLAQKSRRSLMPMLRIQNIQEYKG"
     gene            complement(1448..1816)
                     /gene="rpsF"
                     /locus_tag="ACFOCA_000863"
     CDS             complement(1448..1816)
                     /gene="rpsF"
                     /locus_tag="ACFOCA_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFC6987606.1"
                     /translation="MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGR
                     RQLAYPINKIHKAHYVLMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASPM
                     LGGEKAKNLLSGASEEAVAQ"
     gene            complement(1971..2921)
                     /gene="trxB"
                     /locus_tag="ACFOCA_000864"
     CDS             complement(1971..2921)
                     /gene="trxB"
                     /locus_tag="ACFOCA_000864"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFC6987607.1"
                     /translation="MSQHRKLIILGSGPAGYTAAVYAARANLNPVIITGIAQGGQLMT
                     TTEVDNWPADADGVQGPELMARFLAHAERFGTEIIFDQINAVDLQKRPFTLKGDMGEY
                     TCDALIVATGASAKYLGLPSEEAFAGKGVSACATCDGFFYKNQDVAVVGGGNTAVEEA
                     LYLANIAKTVTLIHRRSEFRAEKIMIDKLMKRVEEGKIILKLESNLQEVLGDDRGVNG
                     ALLKNNDGSEQQIAVSGIFIAIGHKPNTDIFKGQLEMDEAGYLKTKGGTADNVGATNI
                     EGVWAAGDVKDHTYRQAITSAASGCQAALDAERWLGSQNI"
     gene            3060..5222
                     /locus_tag="ACFOCA_000865"
     CDS             3060..5222
                     /locus_tag="ACFOCA_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6987608.1"
                     /translation="MQQKIRFQIEGMTCQACASRIEKVLNKKDFVESAGVNFASEEAQ
                     VVFDDSKTSVADIAKIIEKTGYGAKEKTEDTLPQAEAEHHIGWRLWLLSAINIPFLVG
                     MAGMMIGRHDWMIPPLWQFALASIVQLWLAIPFYKSAWASIKGGLANMDVLVTIGTVS
                     IYLYSVYMLFFSPHAAHGMAHVYFEAGVMVIGFVSLGKFLEHRTKKSSLNSLGLLLKL
                     TPTQVNVQRDGEWKQLPIDQVQIGDLIRANHGERIAADGVIESGSGWADESHLTGESN
                     PEEKKAGGKVLAGALMTEGSVVYRAAQLGSQTLLGDMMNALSEAQGSKAPIARVADKA
                     AAVFVPAVVGIALLTFIVTWLIKGDWTVALMHAVAVLVIACPCALGLATPAAIMVGMG
                     KAVKHGIWFKDAAAMEEAAHVDAVVLDKTGTLTEGRPQVAAVYCVPDSGFDKDDLYRI
                     AAAVEQNAAHPLARAIVSATQARGLEIPAAQNAQTVVGAGIAAEVEGAGLVKAGKAEF
                     AELTLPEFSDGVWDIASIVAVSVDNKPIGAFALADALKADTAEAIGRLKKHNIDVYIM
                     SGDNQGTVEYVAQQLGIAHAFGNMSPRDKAAEVQKLKAAGKTVAMVGDGINDAPALAA
                     ANVSFAMKGGADVAEHTASATLMQHSVNQLADALLVSQATLKNIKQNLFFAFFYNILG
                     IPLAALGFLNPVIAGAAMAASSVSVLSNALRLKRVKID"
     gene            5277..7163
                     /gene="uvrC"
                     /locus_tag="ACFOCA_000866"
     CDS             5277..7163
                     /gene="uvrC"
                     /locus_tag="ACFOCA_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFC6987609.1"
                     /translation="MPSEAVFQMIDMNTENRSPEQFDIPLFLKNLPKLPGVYRFFDEG
                     GKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTITRSESEALILENNFI
                     KALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTLKKPNQYFGPYPNSNAVRDSIQ
                     VLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRDSVRQAATFLNGK
                     TDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLA
                     LAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHYLGKSKPDI
                     IISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQ
                     QHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITT
                     AKPGDDYAAMREVLTRRYGKMQEAEANGETVKWPDAVLIDGGKGQIGVAVSVWEELGL
                     HIPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQTVRDESHRFAITGHRK
                     KRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIY
                     NHLH"
     gene            7280..8684
                     /locus_tag="ACFOCA_000867"
                     /pseudo
     CDS             7280..8684
                     /locus_tag="ACFOCA_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
     gene            8806..9522
                     /gene="trmB"
                     /locus_tag="ACFOCA_000868"
     CDS             8806..9522
                     /gene="trmB"
                     /locus_tag="ACFOCA_000868"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFC6987610.1"
                     /translation="MTDTAENQTQNNWQAEHPRSIRSFVLRQSHMTAAQQRAIDTLWD
                     SFGIDYQATPADLDANFGSNRPKILEIGFGMGTATAEIARRLPETDFLAIDVHGPGVG
                     NLLKLINENHLENIRVMRHDAVEVIENMLQDGSLDGIHIFFPDPWHKKRHHKRRLIQA
                     PFIAKLLPKLKTGGYIHLATDWEEYARQMLEVLSSFDSLQNTAADYAPTPDYRPETKF
                     EARGKRLGHGVWDLVFKRMG"
     gene            complement(9703..9990)
                     /locus_tag="ACFOCA_000869"
     CDS             complement(9703..9990)
                     /locus_tag="ACFOCA_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987611.1"
                     /translation="MTYSFRVENINDISDIPENHLEIVRAALPSNRSNALSREPDGAQ
                     AVFVYEIDGEFRAKLFDRIKDTDSYLQATEDNYSNDPRSIGVVYVLEQQQG"
     gene            complement(10102..12129)
                     /gene="uvrB"
                     /locus_tag="ACFOCA_000870"
     CDS             complement(10102..12129)
                     /gene="uvrB"
                     /locus_tag="ACFOCA_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFC6987612.1"
                     /translation="MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLL
                     GVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYY
                     QPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
                     QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENAL
                     RISLFDDEIDRLDMFDPLSGSLIQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRER
                     IDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDY
                     LPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVM
                     PQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQK
                     GERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGI
                     NLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSM
                     KAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKV
                     SEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGSE"
BASE COUNT         3014 a         3324 c         3122 g         2791 t
ORIGIN      
        1 tgcaagggaa aaggccatta tttttcggtc aatcaggaag ttatcctatt gaacattttg
       61 aaacaaagta tgttatcagc accatattga aacacagcca aattttatgc ccgataccat
      121 tttcaaaata aataatcccc tgattttcac agatttctca aaatcagaaa agtttttgtc
      181 aattgaatat tttggctgtg ttttagtaat ctgttgattt caattatttg caagggaaaa
      241 gacaattatt ttttcggtta ggaagagacc tatcctattg agtatattga agccaggtac
      301 gctgtactgg tttaaattta atccactata aaaacaacca tcccgacttt tgcagaatat
      361 acggaaaaca aaacaaatac cgtctgaaac cacattccga caatcggcag ggtttcagac
      421 ggcatctgat aatttcaatt actcggttgc ggcaacgacg gcaacggtaa ttttagcaac
      481 ggcatcagtg tgcaaagcca cttccacttc gtactcgcca acggctttca gaggaccgtt
      541 cggcagacgt acatttgctt tcacggcttc gatgccggca gcaacgattg cagcagcaat
      601 gtcggcattg gtaacggaac cgaacaggcg accgtccaca ccggcttttt gagcaacggt
      661 aacggtttga ccgtccaatt tttcctgacg gactcgggca tctgccaaaa tttcagcctg
      721 tttggcttcc aattcggcgc ggcgtacttc aaactctttc atattcgctt cggtcgcacg
      781 ttttgcctta cctgcgggaa ttagaaagtt gcgggcgtag ccgtttttaa cggttacgat
      841 atcgcccaag ttgcccagac cgccgatttt ttctaacaga ataatttgca tgattcaatc
      901 tccaaaatta tttgtgttgg tcggtgtaag gcagcagagc caggaagcgt gcgcgtttta
      961 cggcaacagc caattggcgt tggtagaatg ccttcgttcc tgtgatgcgt gcaggaatga
     1021 ttttaccgtt ttcagagata aagtctttca gcaaatcaac ttgtttgtaa tcgacttctt
     1081 ggattttttc agccgtgaaa cggcagaatt ttctacgttt gaatgattga cgagccattg
     1141 tcgtttaacc tttatattct tgaatatttt gtatcctgag catcggcata agggaacgtc
     1201 tgcttttttg agctaaaaaa ccttcgacgt gaacatatac accttgccga tactgccact
     1261 cttccgcctg cctgcctaaa atccgtgccg gaatttccaa ttggacaagg cattgctgcc
     1321 cgttttcctc ctgccacgat tcgtgcttta aaataatatc taaaacaggg attccggcag
     1381 gcgtatatcg aatagggaaa accttttcaa ttaacgcggc aagcgaaaca agattattga
     1441 atcccaatta ttgggcgacc gcttcttcag acgcaccgct caacaggttc ttagcctttt
     1501 caccacccaa cataggggat gcttcagtaa cggcgtgttt ggttttgatg gttagatggc
     1561 gcaatacggc atcattgaag cggaatgcgg tttccagctc ttcaaccact tcgggagtgg
     1621 tttcgatgtt catcaaaacg taatgggctt tatggatttt gttaatcggg taagccagtt
     1681 ggcggcgacc ccaatcttcc aaacggtgaa tcttaccgtt tgcttcggca atcatggttt
     1741 tgtaacgttc aaccatagca ggcacttgct cgctttgatc aggatgaacg ataaacacga
     1801 tctcgtaatg acgcatgtta tctccttatg gatggtaaaa cagccttctg ccatgcgaaa
     1861 gcagaaggca aggttcaaag agcaggcatt atattggggt ttgccgacgg aatcaaggat
     1921 ttggtgcgaa aaatttgcat tccgccgaaa atttcggttt cagacggcat tcaaatgttt
     1981 tggctgccca gccagcgttc cgcgtccaaa gccgcctgac agccggaagc cgcgctggta
     2041 atcgcctgac ggtaggtatg gtcttttacg tcgcccgccg cccatacgcc ttcgatattg
     2101 gttgcgccga cattgtccgc cgtgccgcct ttggttttca ggtaaccggc ttcgtccatt
     2161 tccaactgac ctttgaaaat atcggtattc ggcttgtgcc cgatggcgat aaaaatgccg
     2221 ctgacggcaa tttgttgctc agaaccgtcg ttgtttttta ataatgcgcc gtttacgccc
     2281 cgatcgtcgc ccagtacttc ttgcaggttg ctttccagct tgaggatgat tttgccctct
     2341 tccacgcgtt tcatcagttt gtcgatcatg attttttcgg cacggaactc gctgcggcgg
     2401 tggatcaggg taacggtttt ggcgatattg gcaaggtaga gcgcttcctc aactgccgta
     2461 ttgccgccgc caactacggc aacatcttgg tttttgtaga agaaaccgtc gcaggtggca
     2521 caagcggaaa cgccttttcc tgcaaacgct tcctcactcg gcaaaccgag gtatttggcg
     2581 gacgcgcctg ttgcgacaat cagggcatcg caagtgtact cgcccatatc gcctttgagt
     2641 gtaaacgggc gtttttgcag atcgacggcg ttgatttggt caaaaatgat ttccgttccg
     2701 aaacgttcgg cgtgggcgag aaaccgcgcc atcaattccg gcccttgcac gccgtcggca
     2761 tcggcaggcc agttgtccac ttcggtggtg gtcatcagtt gcccgccttg cgcgatacct
     2821 gtaataatga cggggtttaa attggcgcgc gcggcataga cggcggcggt gtatccggcg
     2881 gggccggaac ccaaaataat cagtttgcgg tgttgggaca ttgtttttcc tttgctgtgt
     2941 caagttttcg gattctactc gaattatcgg cgcgtttgag aaatttcgac cataccggcg
     3001 ttcagacggc atcccgcagc cttaactgcc gtctgaatat caaagcagga atcacgctta
     3061 tgcaacaaaa aatccgtttc caaatcgaag gcatgacctg ccaggcctgc gcttcgcgca
     3121 ttgaaaaagt gttgaacaaa aaagattttg tcgaatcggc gggggtaaac ttcgccagcg
     3181 aagaggcgca ggtagtgttt gacgacagca aaacctcagt agccgacatt gccaaaatca
     3241 ttgagaaaac cggttacggc gcgaaggaaa aaacggaaga tacattgccg caagctgaag
     3301 cagaacacca tatcggctgg cggctgtggc tgctgtccgc catcaatatt ccgttccttg
     3361 tcggtatggc ggggatgatg atcggtaggc acgattggat gattccgccg ttgtggcagt
     3421 ttgcgctggc aagcattgtg caactttggc tggcaatccc gttttacaaa agcgcgtggg
     3481 cgagcattaa aggcgggctg gcgaatatgg acgtgctggt tactatcggc acggtgtcga
     3541 tttacctgta ttccgtttat atgttgtttt tcagtccgca cgcggcacac ggaatggcgc
     3601 acgtgtattt tgaagcgggc gtgatggtga ttggttttgt gtcgctgggc aaatttttgg
     3661 aacaccgtac caaaaaatcc agcctgaaca gcttgggctt gctgctcaaa ctcacgccga
     3721 cccaagtcaa cgtgcagcgc gatggcgaat ggaaacagct tcccatcgac caagtgcaaa
     3781 tcggcgacct tatccgcgcc aaccacggcg aacgcattgc cgccgacggc gttatcgaaa
     3841 gcggcagcgg ctgggcggac gagagccatc ttaccggcga atccaatccc gaagagaaaa
     3901 aggcgggcgg caaagtgttg gcgggcgcgc tgatgaccga aggcagcgtg gtgtaccgcg
     3961 ccgcgcagct cggcagccaa accctgctcg gcgacatgat gaacgcactc tctgaagcgc
     4021 aaggcagtaa agcaccgatt gcgcgcgtgg cggacaaggc ggcggcggtg ttcgtgcctg
     4081 ccgtcgtggg catcgcgttg ttgactttta ttgttacttg gctgattaag ggcgattgga
     4141 cggttgcgct gatgcacgcc gtcgccgttt tggtgattgc ctgcccgtgt gcgctcggtc
     4201 tggctacacc cgccgcgatt atggtcggca tgggtaaagc agtgaaacac ggcatttggt
     4261 ttaaagacgc agcggcaatg gaagaagccg cccacgtcga tgccgttgtg ttggacaaaa
     4321 ctggcacgct gaccgaaggc aggccgcagg ttgccgccgt ttattgtgtt cccgacagcg
     4381 gctttgacaa agacgatttg taccgcatcg ccgctgccgt cgaacaaaac gccgcccatc
     4441 cgcttgcccg agccatcgtt tccgccaccc aagcgcgcgg tttggagatt cccgccgcac
     4501 aaaacgcgca aaccgttgtc ggcgcaggca ttgccgccga agtggaaggt gcgggattgg
     4561 tgaaagcggg caaagccgaa tttgccgaac tgaccttgcc cgagttctca gacggcgttt
     4621 gggacattgc aagcattgtt gcagtctcag tcgataacaa acctatcggt gcattcgcac
     4681 ttgccgacgc gttgaaagcc gataccgccg aagccatagg ccgtctgaaa aaacacaata
     4741 tcgatgttta catcatgagc ggcgacaacc aaggcacggt cgaatacgtc gcccaacaac
     4801 tgggtatcgc tcacgccttc ggcaatatga gtccgcgcga caaagccgcc gaagtgcaga
     4861 aactcaaagc cgccggcaaa accgtggcga tggtcggcga cggcatcaac gacgcgcccg
     4921 cgctcgccgc cgcaaacgtc agcttcgcca tgaaaggcgg tgcggacgtt gccgaacaca
     4981 ccgcgtccgc cacgctgatg cagcattcgg ttaatcagct cgccgatgcc ctgctggtgt
     5041 cgcaagccac tttgaaaaac atcaagcaaa acctgttttt cgccttcttc tacaatatct
     5101 tgggcattcc gctcgccgcg cttggctttt taaatcccgt catcgcaggc gcggccatgg
     5161 cggcaagctc ggtttccgtg ttgagcaatg ccttgcgcct gaaacgggta aaaatcgatt
     5221 gaccgcatat aaccacccga cagcttttcc gaacggataa ggctgccgct gccgatatgc
     5281 cgtctgaagc cgtttttcaa atgattgata tgaatacaga aaaccgttct ccggaacaat
     5341 tcgacatccc gctcttcctc aaaaacctgc ccaagctgcc gggcgtgtac cgtttttttg
     5401 acgaaggcgg caaagtctta tacgtcggca aagcggtcaa cctcaagcgg cgcgtgtccg
     5461 gctatttcca aaaaaacgac cattcgccgc gcatcgcatt gatggtaaaa caggttcgcc
     5521 acatcgaaac caccatcacc cgctccgaat ccgaagccct gattctcgaa aacaacttca
     5581 tcaaagccct gtcgcccaaa tacaatattc ttttccgcga cgacaaaagc tatccttatc
     5641 tgatgctcag cggccatcaa tatccgcaaa tggcgtatta ccgcggcacg ctgaaaaagc
     5701 ccaaccaata cttcggcccg tatcccaaca gcaacgccgt gcgcgacagc atccaagtcc
     5761 tgcaaaaagt ctttatgctg cgtacctgcg aagacagcgt gttcgaacac cgcgaccgcc
     5821 cttgcctgct gtaccaaatc aaacgctgta ccgcgccctg cgtcggacac atcagcgaag
     5881 aagactaccg cgacagcgtg cgtcaagccg ccacttttct caacggcaaa accgacgaac
     5941 tgacccgcac cctgcaacac aaaatgcaaa ctgccgccgc gaatctgcaa tttgaagaag
     6001 ccgcccgcta ccgcgaccaa atccaagcac tcggcattat gcagagcaac cagttcatcg
     6061 acagcaaaaa cccgaacaac cccaacgata tcgatttgct cgcgctggcg gtttcagacg
     6121 gcatcgtctg cgtacactgg gtcagcatac gcggtgggcg gcacgtcggc gacaaaagct
     6181 ttttccccga caccaaaaac gatcccgatc caaacggaca agattacgcc gaagccttcg
     6241 tcgcccaaca ttatttgggc aaaagcaaac ccgacatcat tattagcaac ttttccgttc
     6301 ccgatgcgct gaaagaggct ttggaaggcg aacacggcaa gcagatgcaa tttgtcacca
     6361 aaaccatagg cgaacgcaaa gtctggttga aaatggcgga acaaaacgca caaatggcga
     6421 ttgcacaacg ccgcctgcaa caaagcagcc agcaacaccg catcgacgaa ctcgccaaaa
     6481 tcctcggtat ggattcagac ggcctcaacc gcctcgaatg tttcgacatc agccacacac
     6541 aaggcgaagc cactattgcg tcctgcgttg tgtacgatga gcaaaacatc cagccttcgc
     6601 aataccgccg ctacaacatc acgaccgcca aacccggcga cgactacgcc gccatgcgcg
     6661 aagtgttgac gcgccgttac ggcaaaatgc aggaggccga agccaacggc gagaccgtca
     6721 aatggccgga tgccgtgtta attgacggcg gcaaagggca aatcggcgta gccgtatcgg
     6781 tatgggaaga actcgggctg cacattcctt tggtcggtat cgccaaaggc ccggagcgca
     6841 aagccggtat ggaggagctc atactgcctt ttaccggcga agtcttccgc ctgcccccgc
     6901 acagccccgc cctgcacctt ctgcaaaccg tgcgcgacga atcacaccgc tttgccatta
     6961 caggccaccg caaaaaacgc gacaaagcac gcgttacctc gtccctcagc gacatccccg
     7021 gcgtgggcag caaacgccgc caagccctac tcacccgctt cggcggcctg cgcggcgtga
     7081 ttgccgccag ccgcgaggac ttggaaaaag tggaaggcat cagcaaggca ttggcggaaa
     7141 ccatttataa tcatctgcat tagtatgccg ccaaaacaaa aaccgtctgt aaaaatatga
     7201 tacagcaggc ccgcgtgccg atataaacct aacttcataa catataacga tgattcgaca
     7261 aaacggaaaa cgatctgata tgaacaatcc cgacttaccc tatcggcaga ccttagaatg
     7321 cctttctcaa aaacaatata actttaccga agtccgccga ctgctgacag aagcggcctt
     7381 ggcaggtcat cccgccgccg cattcgagtt ggcaaaacac ctgatggatg cggacagccc
     7441 ctaccaagac cgcgaacaag gtatggaaat gctccgcatc gccgccgaac aggggcatcc
     7501 ctacgcgcgt tacaatctgg catatatcca agaattggaa ggcgcgcccc cctgaaaccc
     7561 tgatatcgct ttacaggcct ccggcagaag caggagtgcc cgaagcgcaa gtccgcctga
     7621 tgtacctgct gtacgcgtcc cggcattttg aagaagcact cgaatgggca aaaaccagcg
     7681 caaaaaacaa caacccccac ggacaatatc tgctcgccca atactgccgg tacggcacac
     7741 cgccggattt tgaaacggcg cacctgctct accgaaaagc ggcggcacaa ggcttgccgg
     7801 aagcacattg gcagctcggg ctgcaatacc gtttcgggca agggacgaaa gtcgacacgg
     7861 cacaggccgt caatcatttg cgcgccgccg cgcaacaagg atacattccc gcctacaccc
     7921 cgcttgccga actcatccta cctacggctc ccgatgaagc cgtttaccgg ttccaacagg
     7981 cggcacagga aaatgacccc gatgcccatg ccgcactggc cgacatctac ctacaaggca
     8041 aatatcagga aagaaaccac aaacttgccc tgcatcatgc cgaagcagcc gcagcagaac
     8101 gccatcccga aggtttgcgg atactgggcg acatctgccg ctacggtttg ggcatagccc
     8161 ccgatacgga aaaagcccgg cattattacc ggcaggcagc cgaagccggc agcctttccg
     8221 cctatcagaa actcatatcc gacagcgcgt taaaccatcc cgaccaatac ggcggcatca
     8281 aagattccgc catcaggcgg caaagggcag aacagcttta tcaaaaagcc caagccctgc
     8341 attacggatt acaatgtgcg cccgaatacg cagccgcgct caaactctac acagaagccg
     8401 cagaactcgg acacagcaaa gcccaaacca atctgggcag tatgtactac ttcggacagg
     8461 gcatagccgc cgactacggc aaagcccgca aatggtttga acaagccgcc gcgcaaaaag
     8521 acagtatggc gttctacaac ctcgcctgca tccattacag cggacacggt gtcgggccgg
     8581 acaaagaaaa agcctgccgc tacctgcaag aagccataaa caacggatac gggcaaaaaa
     8641 gcgtcctgca agaactgctg caacaatggc aaaatgccgt ctgaacagcg ttacacctac
     8701 cctgccgaaa cgaaacaggt ataatcgccc ctttcccttc ccgccgtccg aacaggcctt
     8761 tcacattcag acggcatcct gattgcacaa gcgcacggaa gcattatgac agacaccgcc
     8821 gaaaaccaaa cacaaaacaa ctggcaagcc gaacatcccc gcagcatccg cagcttcgtc
     8881 ctccgccaaa gccatatgac cgccgcacag caacgcgcca tcgatacctt atgggacagc
     8941 ttcggcatcg attaccaagc aacaccggcc gatcttgatg ccaatttcgg aagcaaccga
     9001 cccaaaatcc tcgaaatagg cttcggtatg gggacggcaa ccgcagaaat cgcccgccgc
     9061 ctgcccgaaa ccgacttcct cgccatcgac gtacacggtc ccggcgtagg caatctgctc
     9121 aaactcatca acgaaaacca tttggaaaac atccgcgtga tgcggcacga tgccgtagaa
     9181 gttatcgaaa atatgctgca agacggctcg ctcgacggca tccacatatt cttccccgac
     9241 ccgtggcaca aaaaacgcca ccacaaacgc cgtctgatac aagccccctt catcgccaaa
     9301 ctgctgccca aactcaaaac cggcggctat atccacctgg cgacagactg ggaagaatat
     9361 gcacggcaga tgcttgaagt cctcagtagc ttcgacagcc tgcaaaatac ggcggcagac
     9421 tacgccccca ccccggacta ccgccccgaa accaaattcg aagcgcgcgg caaacgcctc
     9481 gggcacggcg tttgggactt ggtattcaaa cggatgggct aacaaaccgc cggataaaaa
     9541 aatgctgttt gaagcatgtt tgcttacaga cggcattttt tcaagataaa gcagcgagtg
     9601 atgtttcgat acaaggttta aaacaatggt ttgaacgaaa aaacgcatgc gtgcgtatca
     9661 cacatactgc acgtcagctt gagagtttgt gcggccctca ggctaccctt gctgttgctc
     9721 caaaacgtat actactccta tactgcgagg gtcattagag taattatcct ctgttgcttg
     9781 taaataactg tctgtatctt ttatgcggtc aaataactta gctctaaatt caccatcaat
     9841 ttcataaaca aaaacagctt gtgccccatc tggctcacga gataaggcat tacttctatt
     9901 actaggcaga gcagctctaa ctatttccaa atgattttca ggaatatcag atatatcatt
     9961 tatattttct acacgaaaag aatatgtcat tttcagtcct cagaatgtaa ttgatcaagt
    10021 tacgatgttt ctccacatct tttgtttctc cagatctttt aagaacattg tggtcatcaa
    10081 ctaaactttc aagtgctttt attactcact cccaaacaac aacccttcct taatcccccg
    10141 tatcctatcc ctcagtacag ccgcctcttc aaactgcaaa tccctagctg cctgctgcat
    10201 ggctttttcc agtttggcga tttctttaac cgcgtcttct tcgttgtgaa tttcgctgac
    10261 tttaaccttg tttttgcctt gtctacggcc tttaccaccg tcttcttcgt ggtacacgcc
    10321 gtcaatgatg tctttgacct gttttttaat ctgttgcggc acgatgccgt gttcttcgtt
    10381 gaatttaatt tgtttttcac ggcggcgttc ggtttcgtcg atggcggctt tcatagagtc
    10441 ggtgattttg tcggcgtaca gaatcgcgac gccgttcacg ttgcgcgcgg cgcggcctat
    10501 ggtttgaatc aggctgcggt gtgagcgcag gaagccttct ttgtcggcgt cgaggatggc
    10561 gacgagggag acttcgggga tatcgaggcc ttcgcgcaag aggttgatgc cgacgagtac
    10621 gtcaaacagg ccgagccgta aatctctaat gatttcaacg cgctctacgg tatcaatgtc
    10681 gctgtgcagg tagcgcactt tgatgccgag ttcgctgtaa tagtcggtga gttgctccgc
    10741 catgcgtttg gtgagggtgg taacgagaac gcgttcgcct ttttggatgc ggtcgttgat
    10801 ttcgctcatt aagtcgtcga cttgggtggc gacggggcgg atgatgattt gggggtcgac
    10861 cagccctgtg gggcggacga cttgttcgac cacttgtccg gcgtgttctt cttcgtattt
    10921 ggctggagtg gcggaaacga agacagtttg cggcatgact ttttcaaatt catggaattt
    10981 gagcgggcgg ttgtcgcggg cggaaggcag gcggaagccg tagtcgacga ggttttgctt
    11041 gcgcgatgcg tcgcctttgt acatgccgcc gatttgggtg acggtaacgt ggctttcgtc
    11101 gatgaacatg atggcgttgt caggcaggta gtccatcagc gtgggcggcg gttcgccttc
    11161 ttttttgcca gagaagtgcc gggagtaatt ttcgatgcct ttgcagaagc ccatttcgta
    11221 gagcatttcg aggtcaaagc gggtgcgctg ttcgatgcgt tgttgttcga cgggacggtt
    11281 ttctttggta aagaaatcaa tgcgttcacg taattcttct ttgatggact cgcaggcgcg
    11341 caagacggta tcgcgcgggg taacgtaatg gctggacggg aagacggtgt agcggccgac
    11401 gcgctggata aggctgcctg aaagcgggtc gaacatatcg aggcggtcga tttcgtcgtc
    11461 aaacaggctg atgcgcaagg cgttttcgga gctttcggcg gggtacacgt caatcacgtc
    11521 gccacgcacg cggaagctgc cgcgtttaaa gtccaaatcg ccgcgctcgt actgcatgga
    11581 aacgagcgtg gcgatgatgt cgcgctgctc aatggtgtcg ccttctttaa cggacaacac
    11641 catttgctga tactcggtcg ggtcgccgat accgtagatg gcggacacgg tggcgacgat
    11701 aatcacgtcg tcgcgcgtca tcaggttctt ggtggcggaa aggcgcatct gctcgatatg
    11761 ttcgttgatc gcgctgtctt tttcaatgaa caggtcgcgg ctgggcacat aggcttcggg
    11821 ttggtaatag tcgtagtagg agacgaaata ttccaccgcg ttttcaggga aaaactcgcg
    11881 catttcggca taaagctggg cggcaagggt tttgttgtgc gccatgatga tggcgggtcg
    11941 gccgctttgg gcgatgacgt tcgccatggt gtaggttttg cccgaaccgg ttacgccgag
    12001 cagggtttgg taggcaaggc cgtctgaaag cccttcgagc aagccggcaa tagcggtagg
    12061 ctggtcgcct gcgggcggga agggttggtg gagtttgaaa ggggaatcgg ggtatcggat
    12121 gacttccata atcttgcctg tgatgcgttt gcggacaaag cgtgtagtag ggatgggtcg
    12181 gaaacgtctt tcagacggca taaggcggtg aaatcctgaa tgtatgccgt ctgaaaccca
    12241 atcgctaccc a
//
LOCUS       DAXIFS010000044        12249 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.044, whole genome shotgun sequence.
ACCESSION   DAXIFS010000044 DAXIFS010000000
VERSION     DAXIFS010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12249
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.044"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            23..259
                     /locus_tag="ACFOCA_000871"
     CDS             23..259
                     /locus_tag="ACFOCA_000871"
                     /inference="COORDINATES: protein motif:HMM:NF012675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HFC6987613.1"
                     /translation="MWIFSACSRGADPIGRPFAFVNILENLEIRSTLPLIANRPTFPQ
                     LWVNGELIGGSDIILQMYQSGELKPLIEEHSPKV"
     gene            427..2202
                     /gene="ggt"
                     /locus_tag="ACFOCA_000872"
     CDS             427..2202
                     /gene="ggt"
                     /locus_tag="ACFOCA_000872"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036374 - glutathione hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HFC6987614.1"
                     /translation="MAKTYLLTALIMSMTISGCQVIHANQGKVNTHSAVITGADAHTP
                     EHATGLTEQKQVIASDFMVASANPLATQAGYDILKQGGSAADAMVAVQTTLSLVEPQS
                     SGLGGGAFVLYWDNTAKTLTTFDGRETAPMRATPELFLDKDGQPLKFMEAVVGGRSVG
                     TPAIPKLMETIHQRYGVLPWGKLFDTPIRLAKQGFEVSPRLAISVEQNQQHLARYPKT
                     AAYFLPNGVPLQAGSLLKNLEFADSVQALAAQGAKALHTGKYAQNIVSVVQNAKDNPG
                     QLSLQDLSDYQVVERPPVCVTYRIYEVCGMGAPSSGGIAVGQILGILNEFSPNQVGYD
                     AEGLRLLGDASRLAFADRDVYLGDPDFVPVPIRQLISKDYLKHRSRLLEQSDKALPSV
                     SAGDFIHEWVSSQAIELPSTSHISIVDKAGNVLSMTTSIENAFGSTLMANGYLLNNEL
                     TDFSFEPIKQGKQVANRVEPGKRPRSSMAPTIVFKAGKPYMAIGSPGGSRIIGYVAKT
                     IVAHSDWNMDIQDAISAPNLLNRFGSYELETGTTALQWQQALNDLGYKTDVRELNSGV
                     QAIIIEPSRLVGGADPRREGRVMGD"
     gene            2265..2528
                     /locus_tag="ACFOCA_000873"
     CDS             2265..2528
                     /locus_tag="ACFOCA_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987615.1"
                     /translation="MSNQTKIQAIKQASEQIFAICETPNTALQAIHLILRHGGAGELS
                     WQVVYQRVMADKDVVGAGYLIDFAQTAENLPFDALPLGSLVLT"
     gene            2683..3933
                     /gene="glyA"
                     /locus_tag="ACFOCA_000874"
     CDS             2683..3933
                     /gene="glyA"
                     /locus_tag="ACFOCA_000874"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFC6987616.1"
                     /translation="MFSKSVTLAQYDPDLAAAIAQEDQRQQDHVELIASENYVSCAVM
                     EAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAQYANVQPHSGSQAN
                     QAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAVTYGLDENEVLDYAEVER
                     LALEHKPKMIVAGASAYALQIDWAKFREIADKVGAYLFVDMAHYAGLIAGGEYPNPVP
                     FCDFVTTTTHKTLRGPRGGVILCRDNTHEKALNSSIFPSLQGGPLMHVIAAKAVAFKE
                     ALQPEFKQYAKQVKINAAAMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAA
                     LGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNEADARVLANLVADVLSNPE
                     DEANLENVRKQITALCDKYPVYGA"
     gene            4024..4668
                     /locus_tag="ACFOCA_000875"
     CDS             4024..4668
                     /locus_tag="ACFOCA_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6987617.1"
                     /translation="MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVT
                     PLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDS
                     KIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGG
                     LLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR"
     gene            4687..6597
                     /locus_tag="ACFOCA_000876"
     CDS             4687..6597
                     /locus_tag="ACFOCA_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6987618.1"
                     /translation="MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSS
                     FLKILAGVQKLDDGQIIIQNNLKIVYVPQESFFDKDATVFDTVAEGLGEIRDLLRRYH
                     RVGHELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGG
                     QKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDN
                     IATRIVELDRGILRSYPGSFSKYSEKKVQELAVEAEHNRLFDKFHAQEEAWIRKGIEA
                     RRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFAYGDKVI
                     MDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELNPTYGRIRIGSKQEVAYFDQFRS
                     TLNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARAQSPVSSLSGGERNRLL
                     LAKLFTRPANILILDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI
                     IFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKE
                     QRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERW
                     ELLETKQNGNAV"
     gene            6618..6983
                     /locus_tag="ACFOCA_000877"
     CDS             6618..6983
                     /locus_tag="ACFOCA_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987619.1"
                     /translation="MFKRPEEIIVLILAVLWIAGTYFLAALFGADAYTVLKITALTLL
                     WSAASFLLWQKNLSRHIWPLLLGCLTACWWPYLNQSVAPGSLPWYASWTFKTILALIP
                     VTAGYLFKWKQYRQRKTKP"
     gene            7094..8569
                     /gene="trpE"
                     /locus_tag="ACFOCA_000878"
     CDS             7094..8569
                     /gene="trpE"
                     /locus_tag="ACFOCA_000878"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HFC6987620.1"
                     /translation="MISKQEYQAQAAQGYNRIPLVQELLADLDTPLSLYLKLANRPYT
                     YLLESVVGGERFGRYSFIGLPCSHYLKASGKHVDVYQNGEIVEQHDGNPLPFIEAFHN
                     RFKTPEIPSLPRFTGGLVGYFGYETIYNFEHFAHRLKNTTKADPLGTPDILLMLSQEL
                     AVVDNLSGKIYLIVYADPSQPDGYERARERLEDIRTQLRQSCAIPLSLGSKHTEAVSE
                     FGEEPFKACVNKIKDYIFAGDCMQVVPSQRMSMEFTDSSLALYRALRTLNPSPYLFYY
                     DFGDFHIVGSSPEILVRRERDDVIVRPIAGTRLRGKTPAEDLANEQDLLSDAKEIAEH
                     VMLIDLGRNDVGRISKTGEVKVTDKMVIEKYSHVMHIVSNVEGRLKDGMTNMDILAAT
                     FPAGTLSGAPKVRAMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNTL
                     YVQSGAGVVADSDPASEWQETQNKARAVIHAAQMVQEGLDK"
     gene            8566..9111
                     /locus_tag="ACFOCA_000879"
     CDS             8566..9111
                     /locus_tag="ACFOCA_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HFC6987621.1"
                     /translation="MTYEKLYELRQTLRPTTKDGLYTDNEKSREILTVRWSGNTENPK
                     NFSAVAIGINPSKANDERSDKTLTQLARFLDMYGFTNFKMLNIFSSYSTQQTGIRANT
                     QTDFSKFKGCLEDADMIILAWGTDRGAYKDEKNRILEFLKAEKFMEKVFCISETGNSS
                     DTRHPSRISYSYQLVQFEESA"
     gene            9108..10244
                     /locus_tag="ACFOCA_000880"
     CDS             9108..10244
                     /locus_tag="ACFOCA_000880"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HFC6987622.1"
                     /translation="MKNISLSPPAMLGILGGGQLGRMFTVAAKTMGYKVTVLDPDPDA
                     PAAEFADCHLCAPFNDQAALDELAKCAAVTTEFENVNADAMRFLAKHTNVSPGSDCVA
                     IAQNRIQEKAWIRKAGLQTAPYQAICKAEDITEESIQFLPGILKTATLGYDGKGQIRV
                     KTVDELKAAFAEHRGVDCVLEKMVDLRGEISVIVCRLNNDNVQTFDPAENIHENGILA
                     YSIVPARLSADIQQQARQMAQRLADELNYVGVLAVEMFVVGDTHELVVNEIAPRPHNS
                     GHHTVDACAADQFQQQVRLMCNLPPADTKLLSSCCMANILGDVWQEDGGEPDWFPLQS
                     RPDAHLHLYGKKTAHKGRKMGHFTVLTTDSDTAFQEAKKLHQSL"
     gene            10291..10773
                     /locus_tag="ACFOCA_000881"
     CDS             10291..10773
                     /locus_tag="ACFOCA_000881"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6987623.1"
                     /translation="MNLLTLLRPATVQDCKDIFKVHLHSVQYTCILSYNEHALKVWEG
                     LLNTESYLPTISDPDKALWVAEYKGNIQGFFQIDCQEAQLDALYVHPLFHNLGLGTAL
                     LHQAETIAHKSGLSFLKLYASLNSVPFYLLNRYESLGSAVLQLDPSIKIKCELMRKHL
                     "
     gene            10879..11934
                     /locus_tag="ACFOCA_000882"
     CDS             10879..11934
                     /locus_tag="ACFOCA_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6987624.1"
                     /translation="MKTYAPALYTAALLTACSPAADSNHPSGQNAPANTESDGKNITL
                     LNASYDVARDFYKEYNPLFIKTYQSEHPGTSVSIQQSHGGSSKQALSVANGLQADVVT
                     MNQSSDIDLLEKKGLVEKGWQQALPDHAAPYTSTMVFLVRKNNPKQIRDWNDLAKDGV
                     NIVIANPKTSGNGRYAFLGAYGYGLKTTNGNEQEAQKLVASILKNTPVFENGGRAATT
                     TFTQRNIGDVLITFENEANYVSKKLTQGQFEIVYPSYTISAESPVAVVNSVVAKKGTQ
                     KTARAYLEYLWSEPAQELAASLYLRPRNPEVLARHKADFPDLDSFSPEEKFGGWDNIM
                     KTYFADGGIFDRLTAQK"
     gene            11931..12143
                     /locus_tag="ACFOCA_000883"
     CDS             11931..12143
                     /locus_tag="ACFOCA_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987625.1"
                     /translation="MTAMPSEPPFRRHSTHQNRKTAPKIIITRHNGKPDTKPNTAAKM
                     PSEAVGATILIWGALQGRITFLNHPF"
BASE COUNT         3374 a         3349 c         2789 g         2737 t
ORIGIN      
        1 aaggcacgcc ccagtttccc caatgtggat tttcagcgcg tgcagtagag gtgctgaccc
       61 aattggcaga ccctttgctt ttgttaatat cctagaaaac ctagaaattc gcagtactct
      121 accactcatc gccaatcggc caacctttcc acagctttgg gttaatggtg agttaatcgg
      181 tggtagtgat attatcctac aaatgtacca atcaggtgag ctaaaaccac tcattgaaga
      241 gcatagccca aaggtctgat tacttaatat cttaaaataa atatcaaaaa agactgctga
      301 tgacattagc ggtctttttt tgatggtcaa gattgatagt ttggattgaa ttatttagcc
      361 atattaaata caataatcag catgccttgt atgaatcatc aatcaaactc aggcgaagga
      421 gtgcttgtgg ctaaaacata tttattgact gcattgataa tgtctatgac aatctctgga
      481 tgtcaagtca tccatgccaa tcaaggtaag gttaatactc attctgctgt catcacaggt
      541 gcagacgctc acacgcctga acatgcaacg ggactgaccg aacaaaagca ggtgattgca
      601 agtgatttta tggtagcgtc agccaatcca ttagcaacac aagctggcta tgatatctta
      661 aagcaaggcg gtagcgctgc agatgcgatg gtggcggtgc agacgacact aagcttggta
      721 gagccacagt cgtcaggctt gggcggtggt gcatttgtgt tgtattggga taataccgcc
      781 aaaacattga ccacatttga tgggcgtgag acggcaccga tgcgtgcgac gccggaatta
      841 tttttggata aagatggtca accattgaaa tttatggaag cggtggtcgg tggtcgctcg
      901 gtgggtacgc ctgctatccc taaactgatg gagacgatac atcagcgata cggtgtattg
      961 ccttggggaa aattatttga tacgccgatc cgcttggcaa aacaaggctt tgaggtgtcg
     1021 ccaaggcttg ccatctcggt tgagcaaaat cagcagcatt tggcacgcta tccaaaaaca
     1081 gccgcttatt ttttgccgaa tggtgtgccg ctacaagcag gcagcttgct gaaaaattta
     1141 gaatttgctg acagtgttca ggcgttagca gctcaaggtg caaaagctct gcatactggt
     1201 aaatatgccc aaaatatcgt ttcagttgtc caaaatgcta aggataaccc cggtcaatta
     1261 tccttacaag atttatctga ttatcaagtg gtggaacgcc cgcctgtttg tgtgacttat
     1321 cgtatttatg aagtatgcgg tatgggtgca ccaagctcag gtgggattgc tgtgggtcag
     1381 attttgggga ttttaaatga attttcaccc aatcaggtgg ggtatgatgc tgaaggttta
     1441 cgtctcttgg gcgacgcttc taggcttgcg tttgcggatc gtgatgtata tttgggcgac
     1501 cctgattttg taccagtacc cattcgccag ttgatttcta aagactacct aaaacatcgc
     1561 agccggctgc ttgagcagtc ggataaggca ttgcctagcg tatctgcagg cgattttatt
     1621 catgagtggg tgtcctcaca agcgattgag ttaccttcta ccagtcatat atcaattgtg
     1681 gataaggcgg gcaatgtgct atcaatgacg acttccattg aaaatgcgtt tggctcaact
     1741 ttgatggcaa atggctacct gctgaataat gagctgacag actttagttt tgagccaata
     1801 aagcagggca aacaggtcgc caatcgtgtc gagcccggca agagaccacg ctcctcaatg
     1861 gcaccaacca tcgtatttaa agcaggcaag ccttatatgg caatcggctc cccaggtggt
     1921 agccgtatca ttggctatgt cgctaagacg attgtggcac atagtgactg gaatatggat
     1981 atccaagatg ccatcagtgc acccaattta ttaaatcgct ttggtagcta tgaactagaa
     2041 acgggtacaa ccgccctcca gtggcaacaa gcattaaatg atttgggcta taagactgac
     2101 gtgcgtgagc taaattcagg tgttcaagcc attattatcg agccaagcag gctggttggt
     2161 ggtgccgatc cacgccgaga aggtcgagtg atgggtgatt agaggtgaag cttgtatttt
     2221 gtgaatttga ccgcattaag ttaatattaa aataggggga aattgtgagt aatcaaacaa
     2281 aaatacaagc catcaagcaa gcttctgagc agatcttcgc aatttgtgag acgccaaaca
     2341 cagcattaca agccattcat ctgattttaa gacatggtgg ggcaggagag ttgtcttggc
     2401 aagtggtgta tcagcgggtt atggctgata aagatgtggt tggtgctggt tatttgattg
     2461 attttgcaca aactgccgaa aatttaccat ttgatgcatt gcctttgggt agccttgtac
     2521 taacataaag gtaatgagac gctaaaaacc agcatgttaa ataaattacc tgataatgcc
     2581 aaagaaaatt tacgcattat ggactatctg ccttaggttt tgaagtattt ttttatacaa
     2641 aaaacactca tgataccctg attacacaaa ggagccgaga acatgttttc aaaaagcgtt
     2701 accctcgcac aatatgaccc cgatttggca gcagccattg cccaagaaga ccaacgccag
     2761 caagaccacg tcgagctgat tgcctctgaa aactacgtca gctgcgccgt aatggaagcg
     2821 caaggttccc agctgaccaa caaatacgcc gaaggctacc ccggcaaacg ctactacggc
     2881 ggctgcgaat acgtcgatat tgtcgaacaa ttggcaatcg accgcgtcaa aaaactgttc
     2941 ggcgcgcaat acgccaacgt tcaaccgcac tccggctcgc aagccaacca agccgtgtac
     3001 gcttccgttt taaaaccggg cgacaccatt ttgggtatgt ctttggcgca cggcggccac
     3061 ctgacccacg gcgcgagcgt taatatttcc ggcaaactct acaatgccgt tacttatggt
     3121 ttggatgaaa acgaagtgct cgattatgcc gaagtggaac gcttggctct cgaacacaaa
     3181 cccaaaatga ttgtggcggg tgcgtctgcc tacgcgttgc aaatcgactg ggcaaaattc
     3241 cgcgaaatcg ccgataaagt cggcgcatac ctctttgtcg acatggcgca ctacgccgga
     3301 ctgattgccg gtggcgaata tcccaacccc gtgccattct gcgacttcgt gaccaccacc
     3361 acccacaaaa ccctacgcgg ccctcgcggc ggcgtgattc tgtgccgcga caatacccac
     3421 gaaaaagcac tgaactcttc catcttccca agcctgcaag gcggtccgct gatgcacgtc
     3481 atcgccgcca aagccgtagc gtttaaagaa gcgttgcaac ccgagttcaa acaatacgca
     3541 aaacaagtga aaatcaatgc tgccgccatg gcggaagaac tggtcaaacg cggtttgcgc
     3601 atcgtttccg gccgcaccga aagccacgtt ttcctcgtcg acctgcaacc gatgaaaatt
     3661 accggcaaag ccgccgaagc cgctttgggc aaagcgcaca tcaccgtcaa caaaaacgcc
     3721 attccgaacg atccggaaaa acccttcgtt acctccggca tccgcatcgg ctccgccgcc
     3781 atgaccacac gcggttttaa cgaagccgac gcacgcgtat tggcgaactt ggttgccgac
     3841 gtattgtcta accccgaaga cgaagcgaat ctggaaaacg tccgcaaaca gattaccgcc
     3901 ctctgcgaca aataccccgt ttacggcgcg taaacttttt taaaaacaaa tgccgtctga
     3961 aaatttcaga cggcattttt ccaatcggtt aaaatacgcg gtttgttttt ttaggaacgc
     4021 gccgtgcttg cctccgccat cgacttcatc ctccatatcg accaacacct gctcgcgctg
     4081 tcggcgcaat acggtgtgtg gatttatgcg attctgtttt tgattgtttt ttgcgaaacc
     4141 ggcctgattg ttacgccctt actgcccggc gattcgctgc tgtttgccgc cggcgggatt
     4201 gccgcgctgg gcggtatgga tattcatttg atggttgcat tattaagcct tgccgccata
     4261 ctcggcgacg cgctcaattt taccgtcggc aaatatttcg gcggcaggct gttcgccaac
     4321 cccgattcta aaatcttccg acgtgaatat ctcgataaaa cccaccgttt ttacgaaaaa
     4381 cacggcggca aaaccatcat cattgcccgt tttatgccca tcgtccgcac ctttgccccc
     4441 ttcgtcgccg gtatggggaa aatgcactat gccaaattta tccgctacaa catcatcggt
     4501 ggcttgttgt gggttatcct gttttcttac gcgggctatt tctttgccaa cttccccgtc
     4561 gtaaaaaaca atctgggctt ggtgatgggc ggcatcatta ttgtttccgt cctgccgggt
     4621 gcggttgaaa ttgcccgcgc caaacttgcg gtaaaatcca aacggtaact gttgagaatt
     4681 tgcatcatga atatattatc tgtagaaaac gcttcttttg ccatcggcca cgttgccttg
     4741 ctcgacaaaa cttcttttca actcgacagc ggcgaaaaag tcggcttgat cggacgcaac
     4801 ggcgcaggta agtcttcgtt tctgaaaatc ctcgccggcg tgcaaaagct cgacgacggg
     4861 cagattatca ttcaaaacaa cctcaaaatc gtttatgtac cgcaggaatc cttttttgat
     4921 aaggacgcaa ccgtatttga taccgttgcc gaaggtttgg gtgaaattcg cgatttattg
     4981 cgccgttacc accgcgtcgg ccatgagttg gaaaacggtt cgggtgaggc tttgttgaaa
     5041 gaactcaacg aattacaact tgaaatcgaa gcgaaggacg gctggaagct ggatgcggca
     5101 gtcaagcaga ctttggggga actcggtttg ccggaaaacg aaaaaatcgg caacctttcc
     5161 ggcggtcaga aaaagcgtgt cgccttggcg caggcttggg tgcagaagcc cgacgtattg
     5221 ctgctggacg aaccgaccaa ccatttggat atcgacgcga ttatttggct ggaaaatctg
     5281 ctcaaagcgt ttgaaggcag cttggttgtg attacccacg accgccgttt tttggacaat
     5341 atcgccacgc ggattgtcga actcgatcgc ggtattttgc gttcctatcc cggctcgttc
     5401 tccaaataca gcgaaaaaaa agtgcaggaa ttggcggttg aagcggaaca caaccgcctg
     5461 tttgacaaat tccacgcgca ggaagaagcg tggatacgca aaggcatcga agcgcgccgc
     5521 acccgcaacg aaggccgcgt gcgccgtttg gaagagctgc gccgccaacg cgccgaacgc
     5581 cgcaatgtgc agggacaggt caacttcaag ctcgacagcg gcgagaaaag cggcaaaatc
     5641 atcgccgaat tggaacatgc ctcgtttgcc tatggcgaca aagtcattat ggacaaattc
     5701 tccgcgattt tgcagcgcgg cgataaaatc ggtctaatcg gccccaacgg catcggcaaa
     5761 accacatttt taaaactgat tttaggcgaa ctcaacccga cttacggcag aatccgtatc
     5821 ggcagtaagc aggaagttgc ctatttcgac caattccgca gcacgttgaa cgaaaacgac
     5881 accgtgtttt acacgctcgg tcaaggcaac gattacgtcg aagtcggcgg caagaaaaaa
     5941 cacgtaatga gctatctgga agatttctta ttccatccag cccgcgcaca aagtcccgtt
     6001 tcatcgctct ccggcggcga acgcaaccgc cttttgctgg caaaactctt tacccgtcct
     6061 gctaatattt tgattttgga cgaaccgacc aacgacttgg atatcgatac ccaagagctg
     6121 cttgaagatt tgctgcgcga ttatcaaggc acggtattcc ttgtctcaca cgaccgtatg
     6181 ttcctcgata acgtgattac ccaaagcatt atttttgaag gaaatggaag gttaaaagaa
     6241 tatatcggcg gctatcagga ctacatcgac gcaaaatcac gcgaagcgaa gattcagacg
     6301 gaatccgcac ccaaaacagc cgatgccgaa ccggtgaaag aaaaacccaa agccaaccgc
     6361 acggtcaaac tgtcctacaa agaacagcgc gaactcgacg ccctgcccga cgaaatcgcc
     6421 gccttggaag ccgaacaggc agaaatcaac gcgcagcttt ccgatcccga aatcttcaaa
     6481 gattacgaaa aagccggcgc actgcaaagc cgcgccgaag aaatcgaaat gctgcttttg
     6541 gaaaagctgg aacgctggga gctgctggaa accaaacaga acggcaatgc cgtctgaaat
     6601 caaacaggaa gaaaaaaatg ttcaaacgac ctgaagaaat cattgtcctg atacttgccg
     6661 tcctctggat tgccggtacg tattttctcg ccgccctgtt tggagcggat gcttataccg
     6721 tgttaaaaat cactgccctt accctgcttt ggtctgccgc atcattcctc ctttggcaaa
     6781 aaaacctcag ccggcatatc tggccgctgc tgctcggctg cctgactgcc tgttggtggc
     6841 cgtatctgaa tcaatcggtc gcacccggtt ctttaccttg gtatgcatca tggacgttca
     6901 aaaccatctt agccctgatt cccgtaaccg caggttatct gtttaaatgg aaacaatacc
     6961 ggcagcgcaa aacaaagccg taagcccgtc cttttcagac ggcatctccg gtcagactgt
     7021 caacaattcc gataaaatgc tatactcgcg cccgttgccg cgccgtccga aaccgccctt
     7081 tgggaaagca gaaatgatca gcaaacaaga ataccaagcc caagccgctc aaggctacaa
     7141 ccgcatcccg ctcgtgcaag aactccttgc cgatttggat acgccgcttt ccctctatct
     7201 caaactcgcc aaccgcccct atacctacct gctcgaatcc gttgtcggtg gcgaacgttt
     7261 cggccgctat tcttttatcg gcctgccttg cagccactat ctcaaagcca gcggcaaaca
     7321 cgtcgatgtt tatcaaaacg gcgaaattgt cgagcaacac gacggcaacc ccctgccctt
     7381 tatcgaagcc ttccacaacc gcttcaaaac acccgaaatc ccaagcctgc cgcgctttac
     7441 cggcggactg gtcggctact tcggttacga aaccatctac aattttgaac acttcgccca
     7501 ccgcctgaaa aacaccacca aagccgaccc gctcggcacg cccgacatcc tcctgatgct
     7561 ctcgcaagag cttgcagtag tggataacct aagcggtaaa atctacctga ttgtttacgc
     7621 cgatccgtcg cagcccgacg gctacgaacg cgcacgcgaa cgcctcgaag acatccgtac
     7681 acagttacgc caaagttgcg ccatcccgct ttcgctcggc agcaaacaca ccgaagccgt
     7741 cagcgaattc ggcgaagagc cgttcaaagc ctgcgttaac aaaatcaaag actacatctt
     7801 tgcaggcgac tgcatgcagg ttgtccccag ccagcgcatg agcatggaat tcaccgacag
     7861 ctcgctcgcc ctctaccgcg ccttgcgcac gctcaaccct tcgccttatc tcttctacta
     7921 cgatttcggc gatttccaca tcgtcggctc ctcgcccgaa atcctcgtcc gccgcgaacg
     7981 cgacgatgtc atcgtccgcc ccatcgccgg cacgcgcctg cgcggcaaaa cccccgccga
     8041 agaccttgcc aacgaacaag atttgttaag cgatgccaaa gaaatcgccg aacacgtcat
     8101 gttgattgac ttaggacgca acgacgtcgg ccgcatcagt aaaaccggcg aagtcaaagt
     8161 taccgacaaa atggtgattg aaaaatactc ccatgtaatg cacatcgttt ccaacgtcga
     8221 aggccgtctg aaagacggca tgaccaacat ggacatcctc gccgctacct tccctgccgg
     8281 cacactctcc ggcgcaccca aagtccgcgc catggaaatc atcgaagaag tcgaaccaag
     8341 caaacgcggc atctacggcg gtgccgtcgg cgtatggggt ttcaacaacg acatggattt
     8401 ggcaatcgcc atccgcaccg ccgtagtaaa aaacaacacg ctatacgtcc aaagcggcgc
     8461 gggcgtggtt gccgactccg atccggcctc cgaatggcag gaaacacaaa acaaagcccg
     8521 agccgtcata cacgccgcgc agatggtgca ggaagggttg gataaatgac ttatgaaaaa
     8581 ctttatgagc ttcgccaaac actcagaccg actaccaaag acggtctcta tacagataat
     8641 gaaaaaagtc gagaaatcct aacggttaga tggagcggca acacagaaaa tcctaaaaat
     8701 ttctcagctg ttgctatagg aattaatcca agtaaagcaa atgatgaaag aagcgacaaa
     8761 acccttaccc aacttgcacg tttcttggat atgtacggtt ttaccaactt caaaatgtta
     8821 aatatttttt ccagttactc tacacagcaa acaggaatta gggcaaacac ccaaaccgat
     8881 ttttccaaat ttaaaggatg tttggaagat gctgatatga ttattcttgc atggggtaca
     8941 gaccgcggtg cttataagga tgaaaaaaac agaatactgg aatttctaaa agcagaaaaa
     9001 tttatggaaa aagtattctg tatttctgaa actggtaatt ccagcgatac aagacatccg
     9061 tcaagaatta gttatagcta tcaacttgta caatttgaag agtcagcatg aaaaacatat
     9121 ctctttctcc gcccgccatg cttggcatcc tcggcggcgg acaattaggc agaatgttta
     9181 ccgttgccgc caaaaccatg ggctacaaag taaccgttct cgaccccgat ccggacgcgc
     9241 cggcagcaga atttgccgac tgtcatttat gcgcgccgtt taacgaccaa gctgctttgg
     9301 acgaattggc aaaatgcgcg gcggtgacca ctgaatttga aaacgtcaat gccgatgcga
     9361 tgcgttttct cgccaaacac accaatgttt cccccggcag cgactgcgtt gccatcgcgc
     9421 aaaaccgcat tcaggaaaag gcatggatac gcaaagcagg attgcaaacc gcgccgtatc
     9481 aagcaatttg caaagccgaa gacatcactg aagaaagcat acaatttctg cccggcatcc
     9541 tgaaaaccgc tacattgggc tatgacggca aaggccaaat ccgcgtcaaa acggtggatg
     9601 aactcaaagc cgcgtttgcc gaacaccgcg gcgtggattg cgttttggaa aaaatggtgg
     9661 acttgcgcgg cgaaatttcc gttatcgtat gccgtctgaa caatgacaac gtgcaaactt
     9721 tcgatcctgc cgaaaacatt cacgaaaacg gtatcctcgc ctactccatc gtcccagccc
     9781 gactgagtgc cgacattcag caacaggcgc gacaaatggc gcagcgtttg gccgatgaat
     9841 tgaactacgt cggcgtattg gcggtagaaa tgtttgttgt cggcgacacg catgaattgg
     9901 tcgtcaacga aatcgcgccg cgtccgcaca attccggcca ccataccgtc gacgcctgcg
     9961 cggcagacca attccagcaa caggtccgcc tgatgtgcaa cctgccacct gctgacacca
    10021 aattgctgag ttcttgctgt atggcgaata ttttgggcga cgtttggcag gaagacggcg
    10081 gcgaaccgga ttggtttccc ctgcaaagcc ggccggacgc gcacctgcac ctttacggca
    10141 aaaaaaccgc gcacaaaggg cggaaaatgg gacactttac cgttttaacc accgattcgg
    10201 acaccgcatt tcaagaagca aaaaaactgc atcagtccct ataatccgac caacggcaca
    10261 gatgccgtct gaagccgccg acatactgcc atgaacctgc tgacactgtt acgccccgcc
    10321 accgtgcaag actgcaaaga catcttcaaa gtccacctgc actccgtcca atacacctgc
    10381 atcctcagct acaacgaaca cgccctaaaa gtatgggaag gcttgttaaa cacagaaagc
    10441 tacctgccga ccatttccga tcccgacaaa gcactttggg ttgccgaata caaaggcaac
    10501 atacagggat ttttccaaat cgactgccaa gaagcacaac tcgatgcact ttacgtccac
    10561 cccctgttcc acaacctcgg actgggcact gccctgcttc atcaggcgga aaccatcgcc
    10621 cacaaatccg gtttgagctt tctgaaactc tacgcatcgc tcaactccgt cccgttttac
    10681 cttctcaacc gctacgaatc gctcggttcg gcagtattgc agcttgaccc cagcatcaaa
    10741 atcaaatgcg aactgatgcg gaaacacctc tgatccgtcc ttataaccaa aactgataat
    10801 cttcaaatca aacattattt ccacaagcgc agacagccgt ataaagttgc cccatctacc
    10861 aaccgacagg acaagcatat gaaaacctac gcaccggcac tctataccgc agccctgctc
    10921 accgcctgca gccccgcagc cgattcaaac catccgtccg gacaaaatgc cccggccaat
    10981 accgaatccg acggaaaaaa cattaccctg ctcaacgcct catacgatgt ggcacgggat
    11041 ttttacaaag aatacaaccc cttatttatc aaaacatacc aatccgaaca ccccggcaca
    11101 tccgtcagca tccaacagtc ccacggcggc tccagcaaac aggcattatc cgtagccaac
    11161 ggccttcaag ccgatgtcgt aaccatgaac caatcctccg acatcgacct gctcgaaaaa
    11221 aaaggactgg tagaaaaagg ctggcaacaa gccctccccg accacgctgc gccctacacc
    11281 agcactatgg ttttccttgt ccgaaaaaac aaccccaaac agatccgcga ttggaacgac
    11341 cttgccaaag acggcgttaa catcgtcatc gccaatccca aaacctcggg caacggacgc
    11401 tacgccttcc tcggcgcata cggttacggt ctgaaaacca ccaacggcaa cgaacaggaa
    11461 gcccaaaaac tcgtcgcatc catcctcaaa aacacccccg tttttgaaaa cggcggacgc
    11521 gccgccacca ccaccttcac acaacgcaac atcggcgacg tactcattac ttttgaaaac
    11581 gaagccaact acgtcagcaa aaaactgacc caaggacagt ttgaaatcgt ctatccgagc
    11641 tacaccattt ccgccgaaag ccccgtcgcc gtcgtcaaca gcgtcgtcgc gaaaaaaggc
    11701 acgcaaaaaa ccgcccgcgc ctatctcgaa tacctttgga gcgaaccggc gcaagaactc
    11761 gccgcctcac tctacctgcg cccccgcaac cccgaagtat tggcaagaca caaagccgac
    11821 ttcccagact tagactcatt ctctcccgaa gaaaaattcg gcggatggga caacatcatg
    11881 aaaacctact tcgccgacgg cggcatattc gaccgcctga ccgcacaaaa atgaccgcta
    11941 tgccgtctga accgcctttc agacggcatt ccacacatca aaacagaaaa accgcgccca
    12001 aaatcatcat cacaagacac aacggcaaac cggatacaaa acccaacacc gccgccaaaa
    12061 tgccgtctga agccgtcggc gcaaccatcc ttatctgggg cgcgcttcag gggcgcataa
    12121 ctttccttaa ccatcccttt tgacagccaa ataaacagtg cttttgcctg tcagaaacaa
    12181 aaccaatatt ttgcagttcg tatcggaaca tttatagtgg attaacaaaa accagtacag
    12241 cgttctcgc
//
LOCUS       DAXIFS010000045        12048 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.045, whole genome shotgun sequence.
ACCESSION   DAXIFS010000045 DAXIFS010000000
VERSION     DAXIFS010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12048
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.045"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            183..962
                     /locus_tag="ACFOCA_000884"
     CDS             183..962
                     /locus_tag="ACFOCA_000884"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6987626.1"
                     /translation="MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSR
                     LGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAKMQQGDTILLDKNATG
                     FLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDR
                     LAALTEHPLVGEYGHSFRFLPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKFTPES
                     TRFMICGNPDMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF"
     gene            complement(1172..2557)
                     /locus_tag="ACFOCA_000885"
     CDS             complement(1172..2557)
                     /locus_tag="ACFOCA_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HFC6987627.1"
                     /translation="MIVASRWPLLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALV
                     KFEQGRVVRHEWLVNPQKPIPQFVVGLTGISDGMVADAPVFAEIAGELFSVLKGCVLV
                     AHNSRFDYTFLKHEFHRVGIGFSSPVLCSVQLSRCLYPQFYKHSLDSIIERLGIVVED
                     RHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPDG
                     MGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKAPFDWCNTEEVRFFPALGSLHAYK
                     IKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFA
                     NKKAARRALSSWAETYGLCPAAAGILSDGYTEDEPCPVYVSDRCDKACVRSDEQVLAF
                     AHKLPVLDWGKMHEVEITETDPLTGEKVVLHGMGGALEMDDGLWYFDKDLPDAFKAKF
                     KTDRKNIKEIG"
     gene            2675..2751
                     /locus_tag="ACFOCA_000886"
     tRNA            2675..2751
                     /locus_tag="ACFOCA_000886"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2709..2711,aa:Arg,seq:acg)
     gene            2769..2843
                     /locus_tag="ACFOCA_000887"
     tRNA            2769..2843
                     /locus_tag="ACFOCA_000887"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2802..2804,aa:Glu,seq:ttc)
     gene            3402..4577
                     /locus_tag="ACFOCA_000888"
     CDS             3402..4577
                     /locus_tag="ACFOCA_000888"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent flavin oxidoreductase"
                     /protein_id="HFC6987628.1"
                     /translation="MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGT
                     IASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKA
                     VKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKDVALLPILSESRGINIVLKR
                     WMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEK
                     IPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVV
                     EFMSVAGLPARGVRTKFLDSYIKRESKLQTNAKADPRRCTQGLNCLTSCGLRDGLSKA
                     GQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATLGR"
     gene            complement(4788..5336)
                     /locus_tag="ACFOCA_000889"
     CDS             complement(4788..5336)
                     /locus_tag="ACFOCA_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFC6987629.1"
                     /translation="MSQNTPIKPWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDL
                     VTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGKQPLNLLL
                     MHPTRKADDQTVALKPVGSAQNGRAEYEAVFKTLSPTNHWYVRVEDAAGVWRVENKWI
                     TSQGNAVDLTPMDKLFNNTESK"
     gene            complement(5339..6835)
                     /gene="ccoG"
                     /locus_tag="ACFOCA_000890"
     CDS             complement(5339..6835)
                     /gene="ccoG"
                     /locus_tag="ACFOCA_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFC6987630.1"
                     /translation="MTTENQAGSPASGIGTSEQTKAAPKAKKTFDPRASVIQIHPEGE
                     RIHPKKAEGRFAKLRIAAVLATQFVFYVIPWFNWSGRQAVVFNIPERHFFIFGLSLGV
                     GDLIYLALLLMICAFGLFWWTTIAGRLWCGYSCPQTVYTEIMLWIDNLVEGDRNKRLK
                     LEKSPWNFTKIRIKATKYLLIFLVCAWTGITFAGWFVPIRQFVPDLFTGAAGGGAMFA
                     AAFYGFMTFFFAHIMREKVCLHMCPYARFQSAMFDKDTLIVSYDAERGEPRGARKKTV
                     NKEEAGLGDCINCAMCVQVCPVGIDIRNGLQYQCIGCAACIDACDEIMDKMGYPRGLI
                     RYTTESALEHEYSEKDIKKRLLRPRVAGYGAVLALVIIAFLAGLSTRKMVEVDILKDR
                     GVLVRENAKGWLENAYSLRIINKSEKEQLITASVKGFDEIALTGLPEGGIKVAPRETV
                     TLPVQVSTIPEYADKGSHPIEFTFQYRESGAPDGKPVVLEEDATFIGE"
     gene            7363..9342
                     /gene="tkt"
                     /locus_tag="ACFOCA_000891"
     CDS             7363..9342
                     /gene="tkt"
                     /locus_tag="ACFOCA_000891"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFC6987631.1"
                     /translation="MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNH
                     NPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYGY
                     TDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
                     HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDT
                     AAIQAAIEAARAETGKPSIICCKTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGW
                     TYPAFEIPQEIYDAWNAKEKGAKLEAEWDKLFAQYQAKYPAEAAEFVRRMDKKLPENF
                     DGYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVS
                     VTRDKGGNYIHYGVREFGMGAIINGLVLHGGVKPFGATFLMFSEYERNALRMAALMKI
                     NPVFVFTHDSIGLGEDGPTHQPIEQTATLRLIPNMDVWRPCDTAESLVAWAEAVKAAD
                     HPSCLIFSRQNLKFQARSEQQLNDIKRGGYVISEAQGNAQAVIIATGSEVELALEAQK
                     ALAAQNIAVRVVSMPSTNVFDRQDTAYQAAVLPEGLPRIAVEAGHADGWYKYVGLNGA
                     VVGINRFGESAPADLLFKEFGFTVDNVVDTVKSVL"
     gene            9490..10878
                     /gene="fumC"
                     /locus_tag="ACFOCA_000892"
     CDS             9490..10878
                     /gene="fumC"
                     /locus_tag="ACFOCA_000892"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFC6987632.1"
                     /translation="MNTRTEHDTMGNVEVPSEAYWGAQTQRSRNNFKIGGETLPQPLI
                     YALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGRLDGQFPLVVWQTGSGTQSN
                     MNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLI
                     PAVKALRDTLDKKAQAFAPIVKIGRTHLQDATPLTLGQEFSGYVSQLDHGLGRLNDAL
                     KDLYELALGGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSAPNKFEALGGRDAAVAA
                     SGALKTLAASLNKIANDIRWLASGPRCGLGEIKIPENEPGSSIMPGKVNPTQCEAMTM
                     VCCQVFGNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEP
                     VPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFD
                     ELVVPADMVHPR"
     gene            complement(10943..11866)
                     /locus_tag="ACFOCA_000893"
     CDS             complement(10943..11866)
                     /locus_tag="ACFOCA_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6987633.1"
                     /translation="MENQRPLLGFALALLAAMTWGTLPIAVRQVLKFVDAPTLVWVRF
                     TVAAAVLFVLLALGGRLPKWRDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQ
                     VLWQISPFTMIVVGVLVFKDRMTAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGV
                     LLCAAGSMAWVCYAVAQKLLSAQFGPQQILLLIYAASAAVFLPFAKPAHIGSLDGTLA
                     WVCFAYCCLNTLIGYGSFGEALKHWEASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAA
                     PDMNGLGYVGALVVVGGAVTAAVGDRLFKRR"
BASE COUNT         3102 a         3483 c         2790 g         2673 t
ORIGIN      
        1 ggaggattag gggggtattg gggtaaaatt agtggatatt tgaaacgaaa acagccgaaa
       61 acctgtgttt gggtgtcagc tgtcgggagg gaaaggaatt ttgcaaaggt ctcagaccgt
      121 caatgcggaa aaaaacaccc aaattggcta taatcccgac aaacacactc aaggacaaca
      181 acatggcagc ctcgcccgaa gcaaaattca ctgaagaaaa gattttgtgg gtcaaacacc
      241 acacgccgaa actcatcact ttcgccatca gccgtcccga atcctaccgt tttaaagcgg
      301 gacagttctc ccgactcggt ttctacgaag gggaaggctt tatttggcgt gcctactcca
      361 tcgtttccgc agaatatgcc gacacgctcg aatattttgc cgtactcatc caagacggcc
      421 ccatgtctgc ccgtttcgcc aaaatgcaac agggcgacac catcctgctc gataaaaatg
      481 ccaccggctt cctgcttccc gaacgcttcc ccgacggcaa ggatttggtg atgctctgca
      541 ccggctccgg catcgccccc ttcctttcca ttctcgaaca acctgaaatc cggcagcgtt
      601 tcgataccgt caacctgata cattccgtat cttttcccga agaattgatt ttcaacgacc
      661 ggctcgccgc attgaccgaa catcccctgg taggcgaata cggacactcg ttccgtttcc
      721 tccctgttac cacccgtgcc gccaacccct cgggcttaag cggaaaacgc attccggaac
      781 tcttaaaaaa caacagcatc gaacaggcgc tgcataccaa gttcaccccg gaatccacac
      841 ggtttatgat ttgcggtaac ccggacatgg tcaaagacac tttccaaacg ctgcttgaca
      901 tgggttacgc catgcaccgc aaccgcattc ccggtcaaat catgatggaa aacggcttct
      961 aaaaaccacc ctgcttgtcc gatgccttcg gatggacggt caaaccgaca cggcacgaaa
     1021 accgcgtcgg caaaaatgcc gtctgaaaag ttcagacggc atcttcggac acattacctg
     1081 caaacggtaa cacattccaa cccaaaccga ttaggcaatc agtacgaacg actgtttaca
     1141 tacttgccgg ctttcaccaa ccggtatcga tttaaccgat ttccttaata tttttcctgt
     1201 ccgttttaaa cttcgcctta aacgcatccg gtaaatcttt atcgaaatac caaagcccgt
     1261 catccatttc taatgcgccg cccattccat gcagaacaac tttttccccc gttaaaggat
     1321 cggtttcggt aatttccacc tcatgcattt ttccccaatc caagacaggc agcttgtgtg
     1381 caaacgccaa aacctgttcg tcagagcgga cgcacgcctt atcacatcgg tctgaaacat
     1441 atacgggaca aggctcatcc tctgtataac cgtccgacag gataccggct gcggcaggac
     1501 acaatccgta tgtttccgcc cacgacgaca aagcccgtct cgctgccttt ttattggcaa
     1561 ataatccggt aggcggatta tccgtcacac cgtttttcaa agccgctgtt ttcgcattca
     1621 acatgccgtc tgaacctttt tcaaacctga cggtcgtaaa tgttttaagc agatttttgg
     1681 cagatacata acaacccgaa tgataacgtc cgaccaattc cgctttaatc ttatatgcat
     1741 gcaggctgcc caatgcagga aaaaaacgga cttcctccgt attgcaccaa tcaaacgggg
     1801 cttttccgga atccaataaa gccgaaacct cgctatatac ccgttcaaac gtaccgatgt
     1861 aatttacttt tcctccgccg tcgaaacagg ccagcacccc cataccgtca ggcaaaccgt
     1921 acaactgttc cctcaaccgt tcgggcagcg cggcaggcaa cggtttcgga ttcatcaaac
     1981 ggaaacactg cctgatccat gcctcgaccc cgtgttccga cagactgtat tccaaataat
     2041 cgcacaatgc cgatacatcc gccatcgcac gatgcctgtc ttccacaaca atccccaacc
     2101 tttcgatgat actgtccagg ctgtgcttgt aaaattgcgg atacagacac cgggacagct
     2161 gcacactgca caaaacaggc gatgaaaatc cgatacccac acgatgaaac tcatgcttta
     2221 aaaacgtata gtcgaaacgg ctgttatgtg caaccagcac acaacccttc aataccgaaa
     2281 acaactcgcc ggcaatctct gcaaaaacag gcgcatcggc aaccatgccg tctgaaatcc
     2341 ccgtcagccc caccacaaac tgcggaatcg gtttttgagg attaaccaac cactcatgcc
     2401 tcaccaccct tccctgctca aacttgacca aagccacttc ggttaccctg tcttcataca
     2461 gattgccgcc cgtcgattcc aaatcaacca cggcaacagg cattccaaac cgtaaaaata
     2521 ccttttccag caagggccag cgagaagcaa caatcatttt attctcttta aattcaaaca
     2581 acaaaccaat attttacact tttaaggcat ttcatccaac aaaacaattg acagaatccg
     2641 atgattaccc taaaattcga atctttcttg cagcgcaccc gtagctcagt tggatagagt
     2701 atctggctac gaaccagagg gtcgggcgtt cgaatcgctc cgggtgcgcc agtaagaaaa
     2761 tacaatatgc gcccatcgtc tagcggttag gacatcgccc tttcacggcg gtaaccgggg
     2821 ttcgattccc cgtgggcgtg ccaaattcta aatccccgag attatcgctc ggggattttt
     2881 tattgtctca gcaactcgtt accatatctt tacctacccc cttcatcaga atctcagacg
     2941 taatcgaatc atattcaaac ctttgccgtg caaaccgata tcccataacc ggatgcggtg
     3001 tccgtccaac attttacccg attgaaacgc ctgatatatt gcaccccatc aacgtggcat
     3061 tacttttctt aacaatcccc tttgacagca actgactagg gcttttttat gccatcatca
     3121 aatttatagt ggattaactt taaaccagta cggcgttgcc tcgccttgcc gtactatttg
     3181 tactgtctgc ggcttcgtcg ccttgtcctg atttttgtta attcactata atattttctc
     3241 tcccgattga aacaggcgta acagaatatg cccgaagctc cggctgcttt cttgtttacc
     3301 gccgcgatat ttagagtata ataccaaatt tgagcaatag ttctaaaaca gttagaacca
     3361 tttttcatga gcctgactga ttcgtacact cggagaaact gatgcagaat atttttgacc
     3421 ctttggttat tcgtggaaaa tcccttaccc ccatcgtgca aggcggtatg ggggtcggtg
     3481 tttccgcatc gggtttatcc agcgcggtgg cgcgtgaaaa cggtatcgga acgattgcca
     3541 gtgtggattt gcgccacctt cacgaagacc tactcgccga atcacaaatc aatccgagtg
     3601 aagagaaata tacatctttg aactgtaccg cattagacag ggaaatccaa aaagccaaaa
     3661 gcgcttcaga gggaaaagga ctgattgcgg tcaacgtgat gaaggcggtc aaagaccacg
     3721 ccgcgtatgt ccgccaggct tgcgaatcag gggcggatgc ggttgtaatg ggtgccggcc
     3781 tgcctttaga cctgccggaa atgaccgagg gctatcataa agatgtcgcg ctgctgccga
     3841 ttctgtccga atcgcgcggt attaatatcg tcttgaaacg ttggatgaaa aaaggcatat
     3901 tgcccgatgc gattgtagtc gaacatcctg cccacgcggc cggacatttg ggtgcatcaa
     3961 ccgttgaagg cgtaaacgat gccaagttcg acttcaaacg cgtgattgag gaaacgtttg
     4021 aagttttcaa aagtttaggg ctggaaagcg aaaaaatccc gcttattctt gcgggaggca
     4081 tggcaaattt tgaaaaagtc aaaaccgccc taaagaactg gggagcatcc gccgttcaaa
     4141 tcggtacggc ttttgccgtt accgaagaag gagatgcaca ccttaacttc aaaaaaacgc
     4201 tcgccggtgc ggaaactgaa aaagtagtcg aatttatgtc tgttgccggt ttgccggcgc
     4261 gcggtgtccg caccaaattc ctagacagct acatcaagcg tgaaagcaaa cttcagacaa
     4321 acgccaaagc cgacccgcgc cgctgtaccc aaggtttaaa ctgcctaacc agttgcggtc
     4381 tgcgcgacgg gctttccaaa gcaggacagt tctgtattga tatccagctt gccgccgcat
     4441 tccgtggaga agtagataaa ggcctgttct tcagaggtaa agacccgctg cccttcggca
     4501 atgccatccg caccgtccgc gagacgatac aatatctgct gacggggagc gaacctgttg
     4561 caacgctcgg acgctgacat caggtaggat ttgatttgca aacaaaatgc cgtctgaagg
     4621 gctttcagac ggcgtttttc aggctgcgtt ccggaatagt gttaaaaaat aaacgggatg
     4681 agatacattt attttcgtcc gacaaatcaa accatcgcgc cgaatgatca aataatgcct
     4741 gcacggcatt acatctggca aagcaatgca atgaaaacac ggctttttta tttgctttca
     4801 gtattattga aaagcttgtc catcggggtc aaatcgaccg cattgccttg gctggtaatc
     4861 catttgttct cgacgcgcca cacgcctgcc gcgtcctcca cgcgcacata ccagtggttg
     4921 gtcggcgaaa gggttttgaa caccgcctca tattccgccc tgccgttctg cgcgctgccg
     4981 acgggcttga gggcgacggt ttgatcgtcc gccttgcggg tcgggtgcat cagcagcagg
     5041 ttcaaaggct gtttgccgtc aaactcgccg ccgacaaaca cttttgccgc attcatatcg
     5101 ggggaaatga gaacctgcac cccgatatgc cgtctgacgg cttcttcatc ccgatgaagc
     5161 tggatgtcga tatgtttgcc gtctttataa taatcgtccg taaccaaatc tgtcgcgtgc
     5221 tgctgcgcga caaaaaacat agcgacgctg gcgatgacga caaaaatcgg ccccgccatc
     5281 aagatccacg gccagacgtg tttgtaccaa ggtttgattg gagtgttttg agacacggtt
     5341 attctccgat aaaggttgca tcttcttcca agacgaccgg cttgccgtcg ggcgcgccgc
     5401 tttcgcggta ttggaaggta aattcgatag ggtggctgcc tttgtccgcg tattccggaa
     5461 tggtggacac ttggacggga agggttaccg tttcgcgcgg ggcaaccttg ataccgcctt
     5521 cgggcagccc ggtcagggcg atttcgtcaa agcctttgac acttgcggta atgagctgtt
     5581 ctttttcact tttgttgatg atacgcaggc tgtatgcgtt ttccagccag cctttggcgt
     5641 tttcgcgcac cagtacgcca cggtctttca aaatatcgac ctcgaccatt ttgcgcgtgg
     5701 acaaaccggc caggaaggca atgataacta acgccaacac cgcgccgtaa cctgccacgc
     5761 gcggtctgag cagccgtttt ttaatgtctt tttcagaata ttcgtgttcc agcgcgcttt
     5821 cggtcgtata acggattaat ccgcgcggat agcccatttt gtccataatc tcatcgcacg
     5881 cgtcgataca ggcggcgcag ccgatacatt ggtattgcag accgttgcgg atgtcgatgc
     5941 cgacggggca gacttggacg cacatcgcac agttgatgca gtcgcccaaa cccgcctctt
     6001 ccttattgac cgttttcttg cgcgcgccgc gcggttcgcc gcgttccgcg tcataagaaa
     6061 caatcagcgt gtccttgtcg aacatcgcgc tttggaaacg tgcatacgga cacatatgca
     6121 ggcatacttt ttcacgcata atgtgggcga agaagaaggt cataaagcca taaaacgctg
     6181 cggcaaacat cgcgccgcca cctgctgctc cagtgaataa atcgggaacg aactggcgga
     6241 tagggacaaa ccagcctgca aacgtgatgc ccgtccacgc gcagacaagg aaaatcagca
     6301 ggtatttggt ggctttgatg cggattttag tgaaattcca cggcgatttt tccagtttca
     6361 gccgtttgtt tctatcgcct tcgaccaggt tgtcaatcca cagcataatt tcggtgtaaa
     6421 ccgtttgcgg gcaggaatag ccgcaccaca gtcgccctgc aatcgtcgtc caccaaaaca
     6481 gcccgaaggc gcaaatcatc agcagcaagg caaggtaaat caaatcgccc acccccaacg
     6541 acaatccgaa aatgaagaaa tgccgttcgg ggatattgaa aacgacggcc tgcctgccgc
     6601 tccagttgaa ccacggaatg acgtaaaaca caaactgcgt cgccaatacg gcggcgatac
     6661 gcagtttggc gaaccgtcct tccgcctttt tgggatggat gcgttcgcct tcgggatgga
     6721 tttgaatcac gctggctcgc ggatcgaatg ttttttttgc tttcggcgcg gcttttgttt
     6781 gttcggacgt gccgattccg gatgccggac tgccggcttg gttttccgtg gtcattctgc
     6841 attccttaga tttttgattg atggtttgcc cgttaccgcc gccgtttgct tttcagacgt
     6901 catttttctt gttttttaag gcgttgtgtt tcaagttttg agaaaatccg tttttcccaa
     6961 aatatatttc cgctattgta caactttatg cgccgtccgg atgtatgggg cggatacatt
     7021 tcccatccgc atcaaaacgc ctggatttta ccttaccgcc cgaacaaaat ccgaatacgg
     7081 ttaaaaaaaa agactaaaaa aaccgacacc cccatatcgg cagaaccgac ggcgcaagct
     7141 cataaacaaa cgctatcgac aatccggcac acaatctata actttttatt tcaaaaggaa
     7201 taatggcagg cttcgcccgc aaatcgaaaa tccttccccg cctgtcccct gccgccgcct
     7261 tcccacgcgt ccgccctttt cttgaaagca taagcgaatc gggcgataat caacgctttc
     7321 cgattatcca cttatctgaa acaccagcaa ggaaaataca aaatgtctca actggcaaac
     7381 gcaatccgct tcctctcggc cgatgccgtt caaaaagcca attccggcca ccccggcgcg
     7441 cctatgggta tggcggaaat ggcggaaaca ttgtggacga aattcctcaa tcacaacccc
     7501 gccaacccca aattctacaa ccgcgaccgc ttcgtcctct ccaacggcca cgcgtctatg
     7561 ctgttgtaca gcctgctgca cctgaccggc tacaacctaa gcattgaaga cttgaaaaac
     7621 ttccgccaac tgcacagcaa aacccccggc catcccgaat acggctacac cgacggcgtg
     7681 gaaaccacga ccggcccgtt ggggcaaggg attgccaacg cggtgggtat ggcattggca
     7741 gaaaaaatcc ttgccgccga atttaataaa gacggtttga acatcgtcga tcattacacc
     7801 tacgtcttta tgggcgacgg ctgtctgatg gaaggcgtat cgcacgaagc ctgttcgctc
     7861 gccggcacct tgggcttggg caaactgatt gttttatatg atgacaacaa tatttccatt
     7921 gatggtaaag tggacggctg gtttaccgaa aacatcccgc aacgctttga aagctacggc
     7981 tggcacgtcg ttcctaacgt aaatggtcat gacaccgccg ccattcaagc cgccatcgaa
     8041 gccgcacgtg ccgaaaccgg caaaccgtcc atcatctgct gtaaaacctt aatcggcaaa
     8101 ggcagtgcca ataaagaagg cagccacaaa acccacggcg cacctttggg tgcggacgaa
     8161 atcgaagcca cgcgcaaaca tttgggctgg acttaccctg cctttgaaat cccgcaagaa
     8221 atttacgatg cgtggaatgc caaagaaaaa ggcgcgaaac tggaagccga atgggacaaa
     8281 ctgttcgcgc aataccaagc caaatatcct gccgaagccg cagaatttgt gcgccgtatg
     8341 gataaaaaac tgccggaaaa ctttgacggg tacgttcaga cggcattgaa agaagtgtgc
     8401 gccaaagccg aaaccgtcgc cacccgcaaa gccagccaaa acagcatcga aatcttggca
     8461 aaagagctgc ccgaactggt gggcggctct gccgacctga ccccgtccaa tctgaccgac
     8521 tggtcaaaca gcgtctccgt tacccgcgac aaaggcggca actacatcca ctacggcgtg
     8581 cgcgagttcg gcatgggtgc gattataaac ggcttggtat tgcacggcgg cgtgaaaccc
     8641 tttggcgcga ccttcctgat gttcagcgaa tacgagcgca acgccctgcg tatggcggca
     8701 ctgatgaaaa tcaaccccgt gttcgtgttc acccacgatt ccatcggttt gggcgaagac
     8761 ggcccaaccc accagccgat tgagcaaacc gccaccctgc gcctgattcc gaatatggac
     8821 gtatggcggc cgtgcgacac cgccgaatcc ttggtcgctt gggcagaagc cgtcaaagcc
     8881 gccgatcacc cgtcctgcct gattttcagc cgtcaaaacc tgaaattcca agcgcgcagc
     8941 gaacaacaac tgaacgacat caaacgcggc ggctacgtca tcagcgaagc ccaaggcaac
     9001 gcccaagccg tcatcattgc caccggttcc gaagtcgagc tggctttgga agcgcaaaaa
     9061 gcactcgccg cgcaaaacat cgccgtgcgc gtcgtttcca tgccgtccac caacgtattc
     9121 gaccgccaag acaccgccta tcaagccgcc gtcctgcccg aaggcctgcc gcgcattgcc
     9181 gtagaagccg gacacgccga cggctggtac aaatacgtcg gcctgaacgg cgcagtcgtc
     9241 ggcatcaacc gcttcggcga atccgcccct gccgatctgc tgttcaaaga attcggcttt
     9301 accgtggaca atgtggtcga tacagtgaaa tcagtgctgt aaccccacac ctaaacaaat
     9361 gccgtctgaa accaattagg gcttcagacg gcatttgttt gccctctctc cttgatactt
     9421 cctcattcct ccaatctcca ttataatatt tgcgaatcac tcttattcac atttcaaaag
     9481 gagaaacgta tgaacacccg caccgaacac gacaccatgg gcaatgtcga agtcccgtcc
     9541 gaagcctatt ggggcgcgca gacccagcgc agccgcaaca atttcaaaat cggcggcgaa
     9601 accctgccgc agccgctgat ttatgctttg gcgctggtga aaaaagccgc tgccgcgacc
     9661 aatgtttccc tcggcaggat taagccggaa caggcggatt tgattacgca ggcggcggat
     9721 gatgtgttga acggcaggct tgacggacag tttcctttag tggtttggca gaccggctcc
     9781 ggcacgcagt ccaatatgaa catgaacgaa gtgctggcga accgcgccaa cgaaatcgcc
     9841 ggtacgggtt tggcggcgta tcagcccgtc catcccaacg accatgtgaa ccacgcgcaa
     9901 tcgaccaacg acgcattccc gaccgccatc cacgttgccg ccgcgattga aatcaaccgc
     9961 cacctcatcc ccgccgtaaa agccctgcgc gacaccttgg acaaaaaagc ccaagccttc
    10021 gcccccatcg tcaaaatcgg ccgcacccac ttgcaggacg cgacgccgct gactttaggc
    10081 caagaatttt ccggctacgt ttcccagctc gaccacggct taggccgtct gaatgacgcg
    10141 cttaaagact tgtatgaact tgctttgggc ggtacggcgg tcggcacggg tttgaacagc
    10201 catcccgaat acgccgaaaa agccgccgcc aaactcgccg aattgtccgg cttgccgttt
    10261 gtcagcgcgc cgaacaaatt tgaagccttg ggcggacgcg atgccgccgt tgccgcttcg
    10321 ggcgcattga aaacgctggc ggcaagcctg aataaaatcg ccaacgacat ccgctggctg
    10381 gcaagcggcc cgcgctgcgg tttgggcgaa atcaaaatcc ccgaaaacga gccgggttcg
    10441 tccatcatgc cgggcaaagt caacccgacc caatgcgaag cgatgaccat ggtgtgctgc
    10501 caagtgttcg gcaacgacgt taccatcggc atggcgggcg cgtcgggcaa tttcgagctg
    10561 aacgtctata tgcccgttat cgcctacaac ctcttgcaat ccatccgcct gttgggcgac
    10621 gcgtgcaaca gcttcaacga acactgcgcc gtcggcatcg aacccgtacc ggaaaaaatc
    10681 gactatttcc tgcaccattc cctgatgctg gttactgcgt taaaccgtaa aatcggctac
    10741 gaaaacgccg ccaaagtcgc caaaaccgcc tacaaaaaca acaaatcgtt gcgcgaaacc
    10801 gccgttgagt tgggcttgct gacgggcgaa gaatttgacg aactggtcgt tcctgccgat
    10861 atggttcatc cgcgctaatc tttccctcaa ataaaatgcc gtctgaaacc tcgttcagac
    10921 ggcattttcc gttgcctgcg aactagcggc gtttgaacag cctgtccccc accgccgccg
    10981 taaccgcacc cccgaccacg accagtgcgc caacataacc caaaccgttc atatccggcg
    11041 cggcaaaagt atcaggcatc acataatgcc cgagcaaaga aaatattacg gtaaacacgg
    11101 ggagcaaggt tgttaccgcg ctgactttgg aagcctccca atgtttcaac gcctcgccga
    11161 acgagccgta accgattaac gtattcaagc agcaatacgc aaaacaaacc cacgccaacg
    11221 taccgtccaa acttccgatg tgtgccggtt tggcaaacgg caggaacacg gcggcacttg
    11281 ccgcataaat caacagcaga atctgttgcg gtccgaattg cgccgacagc agcttttgcg
    11341 ccacggcata acacacccat gccatactgc ctgccgcaca cagcaacacg cccttcgcat
    11401 acgcgcccaa acccgacaac tcgccgaatt tatcgttaaa aaacataagc aaaccggcaa
    11461 gcagcaaaac caagccgatt ttctgagcgg cagtcatccg gtctttaaac accaacacac
    11521 cgacaacaat catcgtaaac ggcgaaatct gccacaaaac ctgcgtcgtg gtcggcgaaa
    11581 tataatgcag cccttgggca atcagcacaa agtttgccga aatgcccgcc acgccgagca
    11641 gcagcagcct gaatgagcac caagaaaaat cccgccactt cggcagccgc ccgcccaatg
    11701 ccagcaaaac aaacaatacc gccgccgcca cggtaaaacg cacccacacc agcgtcggcg
    11761 catcgacaaa cttcaatacc tgccgcacgg caatcggcag cgttccccac gtcatcgccg
    11821 ccaaaagtgc caacgcgaag cctaggagcg gcctttggtt ttccatcctg attttcctat
    11881 ttttaaacaa ccgtattgcc ggacgatgcc ggtttgccgc atcgggcaat gatggttcaa
    11941 gcgtttgacg tttgattcca accctttgat ttcaaacaaa ccggctgaag ctcggctatt
    12001 gcttcgcgct atttgaaaac accgcctgaa ttttaaaata tagtggat
//
LOCUS       DAXIFS010000046        12003 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.046, whole genome shotgun sequence.
ACCESSION   DAXIFS010000046 DAXIFS010000000
VERSION     DAXIFS010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12003
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.046"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(155..2713)
                     /gene="glnD"
                     /locus_tag="ACFOCA_000894"
     CDS             complement(155..2713)
                     /gene="glnD"
                     /locus_tag="ACFOCA_000894"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HFC6987634.1"
                     /translation="MPANLSSALETFKQQRDAAEAHYLKTNRVSVFFREYTAAVETLL
                     AALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLW
                     DCKLMPSVKSGGIDELCESVRNDITGDTAFLEARFLFGNRQTADELAEKMNAQRNVAA
                     FVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATDLPDLLK
                     QRILTRAEAGMLSHGYRRLAHIRIHLHLNAKRAEDRLLFDLQPQVAESMGYEGLNLRR
                     QSEELMRVFYRAIKTVKQLGGILTPMLQSRVSSTPLRVTLRIDDDYIQVNNQIAARHT
                     DIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNPENRRRFAGF
                     FRNGNGLTQTLRFLNLYGVLGRYLPAWEKIIGLLQHDLFHIYPVDDHILTVVRNVRRL
                     ALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHF
                     LTGEESDLLAWLVENHLLMSAVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDI
                     RGTNPKLWNAWRASLLESLFHAAGRYLTGNGGNPHTLFGRRRQEAADLLTRAAVPEKQ
                     QKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPKSDSFQVMVFMPNGP
                     RLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAEL
                     NSFIHGHTVAETQSRSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLA
                     DMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSPDLKNPKIQSSLKQTLLEQLS"
     gene            complement(2762..3082)
                     /locus_tag="ACFOCA_000895"
     CDS             complement(2762..3082)
                     /locus_tag="ACFOCA_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6987635.1"
                     /translation="MMGNKLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQC
                     GLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLNLMTNSADTRQMPS
                     ESGI"
     gene            complement(3406..3879)
                     /gene="bfr"
                     /locus_tag="ACFOCA_000896"
     CDS             complement(3406..3879)
                     /gene="bfr"
                     /locus_tag="ACFOCA_000896"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6987636.1"
                     /translation="MKGDRLVIRELNKNLGLLLVTINQYFLHARILKNWGFEELGEHF
                     FKQSIVEMKAADDLIERILFLEGLPNLQELGKLLIGESTEEIIACDLEKEKEKHEALI
                     AAISVAEAQQDYVSRDLLEKQKDTNEEHIDWLETQQELIGKIGLPNYLQTAAQED"
     gene            complement(3907..4371)
                     /gene="bfr"
                     /locus_tag="ACFOCA_000897"
     CDS             complement(3907..4371)
                     /gene="bfr"
                     /locus_tag="ACFOCA_000897"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6987637.1"
                     /translation="MQGNQAVLDYMNELLSGELAARDQYFIHSRLYSEWGYTKLFERL
                     NHEMEEETTHAEDFIRRILMLGGTPKMARAELNIGTDVVSCLKADLQTEYEVRDALKK
                     GIKLCEEAQDYVTRDLMVAQLKDTEEDHAHWLEQQLRLIELIGEGNYYQSQL"
     gene            complement(4834..5817)
                     /gene="lipA"
                     /locus_tag="ACFOCA_000898"
     CDS             complement(4834..5817)
                     /gene="lipA"
                     /locus_tag="ACFOCA_000898"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HFC6987638.1"
                     /translation="MSEIKTDDPKRGIKLRGADKTARIPIKVVPLQEKLKKPEWIRAK
                     LPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMIMGDICTRRCPFCDVG
                     HGRPNMLDPDEPKNLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPN
                     TKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARPGANYQHSLDLLKR
                     YKEMMPHIPTKSGIMVGLGETDEDVREIMRDMRAHNIEMITIGQYLQPSDGHLPVLRY
                     VTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQAAEALRESHGGCGHH"
     gene            complement(5810..6433)
                     /gene="lipB"
                     /locus_tag="ACFOCA_000899"
     CDS             complement(5810..6433)
                     /gene="lipB"
                     /locus_tag="ACFOCA_000899"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HFC6987639.1"
                     /translation="MKIIHKGLVEYLPTFEAMKTFNANRTASTEDELWVVEHPPVFTQ
                     GLAGKPEHLLIRDDIPIVQIDRGGQITYHGPGQLVVYTMIDFKRRKTSVRNIVSALEN
                     SIIATLAEYGIEAAADPKRPGVYVGERKIASLGLRIKGGSVYHGLALNVNMDLSPFTH
                     INPCGYAGMEMTQIADFVQPCPTPDEVAAKLTAHLETQFTPKADNNE"
     gene            complement(6435..6710)
                     /locus_tag="ACFOCA_000900"
     CDS             complement(6435..6710)
                     /locus_tag="ACFOCA_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HFC6987640.1"
                     /translation="MTEQKNKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDT
                     QAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHKLVKVVL"
     gene            6895..7965
                     /locus_tag="ACFOCA_000901"
     CDS             6895..7965
                     /locus_tag="ACFOCA_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFC6987641.1"
                     /translation="MYRRKGRGIKPWMGAGAAFAALVWLVFALGDTLTPFAVAAVLAY
                     VLDPLVEWLQKKGLNRASASMSVMVFSLILLLALLLIIVPMLVGQFNNLASRLPQLIG
                     FMQNTLLPWLKNTIGGYVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSI
                     GNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVM
                     LIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGSWNGI
                     LAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAA
                     VTLVLLREGVQKYFAGSFYRGR"
     gene            complement(8212..9159)
                     /locus_tag="ACFOCA_000902"
     CDS             complement(8212..9159)
                     /locus_tag="ACFOCA_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stomatin-like protein"
                     /protein_id="HFC6987642.1"
                     /translation="MEFFIILLVAVAVFGFKSFVVIPQQEVHVVERLGRFHRALTAGL
                     NILIPFIDRVAYRHSLKEIPLDVPSQVCITRDNTQLTVDGIIYFQVTDPKLASYGSSN
                     YIMAITQLAQTTLRSVIGRMELDKTFEERDEINSTVVSALDEAAGAWGVKVLRYEIKD
                     LVPPQEILRSMQAQITAEREKRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAV
                     NASNAEKIARINRAKGEAESLRLVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVA
                     AFNNLAKESNTLIMPANVADIGSLISAGMKIIDSSKTAK"
     gene            complement(9174..9581)
                     /locus_tag="ACFOCA_000903"
     CDS             complement(9174..9581)
                     /locus_tag="ACFOCA_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HFC6987643.1"
                     /translation="MTVWFVAAVAVLIIELLTGTVYLLVVSAALAGSGIAYGLTGSTP
                     AAVLTAALLSALGIWFVHAKTAVGKVETDSYQDLDAGQYVEILRHTGGNRYEVFYRGT
                     HWQAQNTGQEELEPGTRALIVRKEGNLLIIANP"
     gene            9662..10321
                     /gene="ung"
                     /locus_tag="ACFOCA_000904"
     CDS             9662..10321
                     /gene="ung"
                     /locus_tag="ACFOCA_000904"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFC6987644.1"
                     /translation="MDTWHDALGGEKQQPYFQEILNAVRQERLSGQIIYPPAADVFNA
                     FRLTAFDRVKAVILGQDPYHGAGQAHGLAFSVRQGIRIPPSLLNIYKELETDIEGFSI
                     PAHGCLTAWAEQGVLLLNTVLTVRAGQAHSHALLGWERFTDTVIRQLATHRKHLVFML
                     WGGYAQQKGRLIDSQNHLILTAPHPSPLSAYRGFFGCRHFSQANSYLSRHGIDPINWK
                     L"
     gene            10341..10913
                     /locus_tag="ACFOCA_000905"
     CDS             10341..10913
                     /locus_tag="ACFOCA_000905"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6987645.1"
                     /translation="MLKLHLWNQSIYGVDAVIVTHTHEDHWGETAARSIPKNLPVYVQ
                     HQADAAKIRSQGFTDVRVLNGSTVFNGVTISKTGGVHGTEAMYANPQLAEILGDAMGV
                     VFQSSGHKTAYIMGDTVWTADVNKALNRYKPDYLIMNTGYALISGITVHMDTVNHTAV
                     SRTDMRKFIRGQGIESRVNVPEDGEILKLD"
     gene            complement(11028..11438)
                     /locus_tag="ACFOCA_000906"
     CDS             complement(11028..11438)
                     /locus_tag="ACFOCA_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HFC6987646.1"
                     /translation="MNHIARQFAILLGEGLKPLGIAPAQFPILLELWQKDGLSQQELV
                     ERADLKQATIANTLARMERDGLITREPNPDDARSRLIMLTEQARALQQQSTEIAQAIN
                     QTALSDLSANEQKLFLEMAAKIVARQQEMITGEK"
     gene            11786..11869
                     /locus_tag="ACFOCA_000907"
                     /pseudo
     CDS             11786..11869
                     /locus_tag="ACFOCA_000907"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome B"
BASE COUNT         2609 a         2839 c         3380 g         3175 t
ORIGIN      
        1 tacattcaga gttttcttcc cataaaatcc caaattttct tgttgagtcc ataataatat
       61 tcatataaat ccttatatta ataaattatt tacaatatcc cccgctttca gacggcatac
      121 ggcgtggcgg cggaatgccg tctgaaggcg ggcgttatga taattgttcc agcagcgtct
      181 gcttcaatga ggactggatt tttgggtttt tcaggtcggg gctaaaaacg gtaaaactgt
      241 cttcggcgcg ttcatccagt gtggagattt tggcatagcg caggctgacg ttgtgggcga
      301 aaaagacttc cgccatatcg gcgagcagga aggggcggtt gacggcggtg atttcgacgg
      361 aataccagtc gggatagtct tcttcggggg tgatggtgat gctcggtgcg atcggcatat
      421 agcggctgcg gcggctgatg cggcggctgc ggctttgggt ttcggcaacg gtgtgtccgt
      481 ggataaagct gttgagttcg gcttcgagcg cgctttggat gtcggggtag tcttcggggg
      541 cgtgctgcga ggggatttgc acgatgaagg tgtcgaggat gtagtcgtgt tcggtgatga
      601 aggcgcgggc ggcgaggatg tcgaagccgt ggcggctgaa gatgcggcag aggcgggcga
      661 acaggcgcgg gccgttgggc atgaaaacca tgacttgaaa gctgtcgctt ttgggcagga
      721 tgcggctgcg gacgatgggg gtttcaaagt cgtggactag gttggcggcg tgccacagga
      781 tttcgcggga ctggtggcgg gcgaagtagg cggaaccgag cgcgttccat agttttttct
      841 gctgtttttc ggggacggcg gcgcgggtga gtaagtcggc ggcttcctgc cggcggcggc
      901 cgaagagggt gtgcgggttg ccgccgttgc ctgtaaggta gcgtccggcg gcatggaaga
      961 ggctttccag caggctggcg cgccatgcgt tccacagctt gggattggtg ccgcgtatgt
     1021 cggaaatggt cagaaggtag agcgcgctga ggcgttcgtg ggtttgcacg cgtttgcaga
     1081 aggcatcgag tacgctgggg tcttggatgt cttctttttg ggcgacggca gacatcagca
     1141 ggtggttttc gaccagccag gcgagcaggt cgctttcttc tccggtcagg aagtggtcag
     1201 cggcaaattg gcgcgcgtct gcgatgcctt gtatggcatg gtcgccgccg cgtcctttgg
     1261 cgatgtcatg gaaaaaggcg gcaaggtaga ggatgtcttg tttttcaaag gactgcatca
     1321 gtgcagaggc gtagggcagc tcgtggctgt gcatatccaa ggcaaggcgg cggacgttgc
     1381 ggacgacggt gaggatgtgg tcgtccacgg gatagatgtg gaacaggtcg tgttggagca
     1441 ggccgatgat tttttcccac gcgggcaggt agcggcccaa cacgccgtag aggttgagaa
     1501 agcgcagggt ctgggtcagc ccgttgccgt tgcggaaaaa accggcgaag cggcggcggt
     1561 tttcgggatt ttggtagaag ctgcggttga ttttgcgcgt cgcgccccac caggcgcgca
     1621 gggtttgcgg ttcgagcgcg gtaatgtcgt tgcgctgctg catgatttcg acgattttga
     1681 aaatgtgttc gggccgtctg aaaaaaatat cggtgtgccg cgcggcgatt tggttgttga
     1741 cttggatgta gtcgtcgtca atccgcaggg taacgcgcaa cggggtggag gaaacgcggc
     1801 tttgcagcat aggcgtgagg atgccgccca gttgtttgac ggttttaatc gcgcggtaaa
     1861 acacgcgcat cagttcttcg ctttggcggc ggaggttcaa gccttcataa cccatgcttt
     1921 cggcgacttg cggctgcaaa tcgaacagca ggcggtcttc ggcgcgcttg gcgtttaaat
     1981 gcagatggat gcggatgtgg gcgaggcggc ggtagccgtg cgaaagcata ccggcttcgg
     2041 cacgcgtcaa aatccgctgt ttgagcaggt cgggcaggtc ggtcgccaag ccttgcgcct
     2101 tcgctatcca aagcagggtg tggatatcgc gcagaccgcc cggacagctt ttgatattcg
     2161 gctccaatac tgcccccgaa ccttgcgatt tggcgtggcg gtgttccatc tccaccagtt
     2221 ttgcctcgac aaacgccgcc acattgcgct gcgcgttcat tttttccgcc agttcatccg
     2281 ccgtttggcg gttgccaaac aaaaaacggg cctctaaaaa cgctgtgtcc cccgtaatat
     2341 cattgcgcac gctttcgcac agttcgtcaa tgccgccgct ttttacagac ggcatcagtt
     2401 tgcagtccca cagggtttgg acaaaccggg caatctgttc ctgaatgccg tctgaaagcg
     2461 gggcagggga gacaaccgcc aaatccacat ccgaacaggg atacagttcg ccgcgcccga
     2521 agccgcccac cgccatcaga cataacgcgc tgttttgaaa atgttctacc cacaatgctg
     2581 ccagtaaggt ttcgactgcc gccgtgtatt ccctgaaaaa taccgacacg cggttggttt
     2641 tcaaataatg cgcttcggcg gcatcgcgct gctgtttgaa ggtttccagt gctgaagaca
     2701 ggtttgcagg catttttatt ctttcgattg gcgggaaaaa gggaggcgga tggttcagcg
     2761 gtcaaatacc gctttcagac ggcatttgtc gggtatcggc ggaattggtc atcaggttca
     2821 accgttcctg cggcggcagc agcaactgat acgccgccac gcccaaggcc gccgccattt
     2881 tttcgatatt cgacagggcg atgttccagc gtttgcgctc gactgccgac acataagtcc
     2941 tgtccaaacc gcattgccgc gccaattctt cttgcgacca acccttgttc acgcggaaaa
     3001 gccgcatatt gtatgccaat accgcccgca aatcctgctc gtcaggcagt tcggcaggca
     3061 gagtcaattt gttgcccatc atttgtttcc ggataaatgt taaagttaag catttgctgt
     3121 tacggatttt acttcacata aaagctaaaa aaaaggggtg gcggcagcca cacccaaaca
     3181 cacacacatc aagaggaaag aggtaaaatc aagacagatt gggaaacagc aaacaaacaa
     3241 tctagatttc atgtcggtat tatcaaacaa aaaccgttat cgagtattga ttcaaatcaa
     3301 tttcgatttt attcgcaatc cgataaagaa aaacggcata tccgtttata tggatatgcc
     3361 gtctgatggt gcaggggact gctatatttg gcagtgattt gtgttttagt cctcttgcgc
     3421 cgctgtttgc aggtagttcg gcaaaccgat tttgccgatc agttcctgct gggtttcgag
     3481 ccagtcgatg tgttcttcgt tggtgtcttt ttgtttttcc aacaaatcac ggctgacata
     3541 atcctgttgc gcttctgcca cggaaattgc cgcaatcaat gcctcatgtt tttctttctc
     3601 tttttccaaa tcgcaggcga tgatttcttc ggtggactcg ccaatcagaa gcttgcccag
     3661 ttcttgcagg ttcggcagac cttcgaggaa cagaatgcgc tcgatcaaat cgtcggcagc
     3721 tttcatttca acgatggact gtttgaagaa atgttcgccc agttcttcaa agccccagtt
     3781 tttcaaaata cgggcgtgaa ggaaatattg gttgatggtt accagcagca agcctaagtt
     3841 tttgtttagc tcgcggataa ccagacggtc gcctttcata cggactcctt ttattccgaa
     3901 tacggattac agttggcttt ggtagtagtt gccttcgcca attaactcga tcaggcgaag
     3961 ctgctgttcc agccagtggg cgtggtcttc ttcggtatct ttcagttggg caaccatcag
     4021 gtcgcgcgta acatagtctt gagcctcttc gcacagtttg atgccttttt tcaacgcatc
     4081 acgtacttca tattcggttt gcaggtcggc tttgaggcag gaaaccacgt ccgtgccgat
     4141 attcagttcg gcgcgtgcca ttttcggcgt gccgcccagc atcaggatgc ggcggatgaa
     4201 gtcttcggcg tgtgtggttt cttcttccat ctcgtggttg agacgttcaa aaagtttggt
     4261 gtagccccat tcggagtaga ggcgggagtg gataaagtat tggtcgcgtg ccgccagctc
     4321 gccagacagc aattcgttca tgtaatctaa aactgcttga ttgccttgca taatatttct
     4381 cttttcttaa tttgggtttc gtgtagttaa acagtggatg tagcactgtt cggaatgcgt
     4441 gcattgtatg caaaagctgt cggcatgaca aattttctat ttaaaataca aacaattatc
     4501 aaaagaaata gggcgtattc cccgatgcct tccaaatcag tatgctgttt tttatcggtt
     4561 ttttgtgctg ttaaaactaa taatccatat tatccataaa gaacatttac acttgttaac
     4621 catagctaaa agcaaatacg gtacggtttt ttatcaaaat ttataatgaa tcgttctcat
     4681 taaccgacag attcttttga gattatcgga ttttgggaat aaattatgcc gtctgagggg
     4741 ctttcagacg gcatagacaa ttaaagctga ttaaacaacg cggcagacag cagcgtagga
     4801 aattattttt tacttcggaa cggtattttg ggtttaatga tgcccgcaac cgccgtggct
     4861 ttcgcgtaag gcttcggcag cctgttcgtc ggcgtggtag ctggaacgta ccatcgcgcc
     4921 gatggcggca ttgctgaagc ccagttcgta tgcttctttt tcaaagattt tgaactgctc
     4981 gggcgtaacg tagcgcagga cgggcaggtg tccgtctgaa ggctggaggt actgtccgat
     5041 ggtaatcatt tcgatattgt gcgcccgcat atcgcgcata atttcacgca cgtcttcgtc
     5101 tgtttcgccc aagccgacca tgatgccgga tttggtcggg atgtgcggca tcatttcttt
     5161 ataacgtttt aataagtcta aagaatgttg ataattggca ccgggacggg cttttctgta
     5221 caggctcgga tgggtttcta ggttgtggtt catcacgtcg ggcggggttt cggcaaggat
     5281 tttgagtgcg atgtccaagc gtcctcggaa gtcggggacg aggatttcga ttttggtgtt
     5341 cgggctggtt tcgcggatgg ctttgatgca gtcggcgaaa tgctgtgcgc cgccgtcgcg
     5401 caggtcgtcg cggtcgacgg aggtgatgac gacgtaacgc aggttcatgg ctttgacgga
     5461 ttcggcgagg tttttcggtt cgtcggggtc gagcatattg ggccgaccgt gtcccacgtc
     5521 gcagaacggg cagcggcggg tgcagatatc gcccataatc atgaaggtcg ccgtgccttt
     5581 gctgaagcat tcgccgatgt tggggcagga ggcttcctcg caaacggtgt gcatcttttg
     5641 ttcgcgcaaa atgtctttga tttcaaagaa tttgcgcgat gggagtttgg cgcgtatcca
     5701 ttcgggcttt ttcagttttt cctgaagggg gacgactttg atggggatgc gcgcggtttt
     5761 gtccgcgcct ctgagtttga tgccgcgttt ggggtcgtcg gttttgattt cactcattgt
     5821 tatctgcttt cggtgtgaat tgtgtttcaa ggtgtgcggt aagtttggcg gcgacttcgt
     5881 ccggcgtggg gcagggttgg acaaaatccg cgatttgcgt catttccata ccggcgtagc
     5941 cgcaggggtt gatgtgggta aacgggctta aatccatatt gacgttgagc gcaaggccgt
     6001 gatagacgga acctcctttg atacgcagcc ccagtgaggc gattttgcgt tcgccgacgt
     6061 aaacgccggg gcgtttggga tctgccgccg cttcgatgcc gtattccgcc aatgtggcga
     6121 tgatgctgtt ttcaagcgcg gaaacaatgt tgcggacgct ggttttgcgc cgtttgaaat
     6181 caatcatcgt ataaacgacc aattgcccgg gtccgtgata ggtaatctgc ccgccccggt
     6241 cgatttggac gatgggaatg tcgtcgcgga tcagcaggtg ttcgggtttg ccggccagcc
     6301 cctgtgtgaa cacgggggga tgttctacca cccacaattc atcttcggta gaggcggtac
     6361 ggttggcgtt gaaagttttc attgcctcaa aagtcggcag atattcaacc aaacctttat
     6421 gtatgatttt catctcaaag taccactttg accaatttgt gcgaagtcag cgcgcggtag
     6481 atattgtcaa gttgttcttg gttttcaacc tttacttgta cggtggcgcc ggtatagttg
     6541 cctttgctgc tcggacgcgt ggtgatgtgg tgcgcctgcg tgtcgggggc gtggaggcgg
     6601 acggtgtcca ataccgcctg ctcgaactcg ggatgcaccg cgcccattac tttcaatggg
     6661 aaggtgcagg gaaattcgat gagggatgtt ttgttttttt gttcggtcat gatgtgctgc
     6721 cttgtcgtgt acggtatgcc gtctgaaggc gggtttgcct ttcagacggc atcggatgtg
     6781 cgttatttta gcctaaaccg cgataacagg ctatcgggaa ggcggaggct tttttgacgg
     6841 cgcggcggtt ctgctatact ggcgcacaat attattttta gaagggtggt ttttatgtat
     6901 cggaggaaag ggcggggcat caagccgtgg atgggtgccg gtgcggcgtt tgccgccttg
     6961 gtctggctgg ttttcgcgct cggcgatact ttgactccgt ttgcggttgc ggcggtgctg
     7021 gcgtatgtat tggacccttt ggtcgaatgg ttgcagaaaa agggtttgaa ccgtgcatcc
     7081 gcttcgatgt ctgtgatggt gttttccttg attttgttgt tggcattatt gttgattatt
     7141 gtccctatgc tggtcgggca gttcaacaat ttggcatcgc gcctgcccca attaatcggt
     7201 tttatgcaga acacgctgct gccgtggttg aaaaatacaa tcggcggata tgtggaaatc
     7261 gatcaggcat ctattattgc gtggcttcag gcgcatacgg gcgagttgag caacgcgctt
     7321 aaggcgtggt ttcccgtttt gatgaggcag ggcggcaata ttgtcagcag tatcggcaac
     7381 ctgctgctgc ttcccttgct gctttactat ttcctgctgg attggcagcg gtggtcgtgc
     7441 ggcattgcca aactggttcc gaggcgtttt gccggtgctt atacgcgcat tacaggcaat
     7501 ttgaacgagg tattgggcga atttttgcgc gggcagcttc tggtgatgct gattatgggt
     7561 ttggtttacg gcttggggtt ggtgctggtc gggctggatt cggggtttgc aatcggtatg
     7621 gttgccggta ttttggtttt tgttccctat ttgggcgcgt ttacaggact gctgctggca
     7681 accgtcgccg ccttgctcca gttcggttcg tggaacggca tcttggctgt ttgggcggtt
     7741 tttgccgtag gacagtttct cgaaagtttt ttcattacgc cgaaaatcgt gggagaccgt
     7801 atcgggctgt cgccgttttg ggttatcttt tcgctgatgg cgttcgggca gctgatgggc
     7861 tttgtcggaa tgttggcagg attgcctttg gccgccgtaa ccttggtctt gcttcgcgag
     7921 ggcgtgcaga aatattttgc cggcagtttt taccggggca ggtaggcggt tccgaaacat
     7981 atttgaagcg gaatacaacc ctgcccgagt ttaaatatag tggattaaca aaaatcagga
     8041 caaggcgacg aagccgcaga cagtacagat agtacggcaa ggcgaggcaa cgccgtactg
     8101 gtttttgtta attcactata atttgaagcg gaatacaacc ttgcccgggt ttaaataaaa
     8161 atgccgtctg aaccccgaaa acagagcttc agacggcatt ttcatcacgg cttatttggc
     8221 ggttttgctg ctgtcgataa ttttcatacc ggcagaaatc aggctgccga tgtcggcaac
     8281 attggcgggc ataatcagcg tattgctttc tttggcaaga ttgttgaacg cagcgacgta
     8341 ttgttccgca atcttcagat tgaccgcatc cgcgccgcct tgggtttgaa gggcggcggc
     8401 aatttgacgg atggcttcgg cattggcttc ggcaacaagg cgcaaggatt ccgcttcacc
     8461 tttggcgcgg ttgatgcggg cgattttttc ggcatttgac gcattgaccg cagcctgagc
     8521 ctcgccttcg gattgttgga tttcggcttc gcgctgacca ctggcaaggt tgatttgttc
     8581 gattttacga ccttcggatt cggcgatacg ggcgcgtttt tcgcgttcgg cagtaatttg
     8641 cgcctgcatt gagcgaagga tttcttgcgg cggaaccaag tctttaatct cataacgcaa
     8701 aaccttcacg ccccaagctc cggcggcttc atcgagggcg gagacgacgg tgctgttgat
     8761 ttcgtcgcgt tcttcaaacg ttttgtccaa ctccatacgc ccgataacgg aacgcagcgt
     8821 cgtttgggca agctgggtaa tcgccataat gtagttgctc gaaccgtatg aggcgagttt
     8881 gggatcggtt acttggaaat agatgatgcc gtcaaccgtc agctgggtgt tgtcgcgcgt
     8941 gatgcagacc tggctgggta cgtctaaagg gatttctttc agcgaatgac ggtaggcgac
     9001 gcggtcgata aagggaatca aaatattcaa accggccgtc aaggcgcgat ggaaacgtcc
     9061 aagcctttcg acaacgtgga cttcctgctg tgggatgacg acaaaggatt tgaagccgaa
     9121 aacggcaacg gctaccaaca agataatgaa aaattccata attcctccga gtgttaaggg
     9181 tttgcgatga taagaaggtt gccttccttg cggacgatta gggcgcgagt tcctggttca
     9241 agctcttctt gccccgtatt ttgagcctgc cagtgcgtac cgcgataaaa aacttcgtaa
     9301 cggttgccgc ctgtgtgtcg gaggatttcg acatattgtc cggcatccaa atcctgatat
     9361 gaatccgttt caacttttcc cacggcggtt ttggcgtgta cgaaccaaat acccagcgcg
     9421 gaaagcagag cggcggtcaa gacggcggca ggcgtactgc cggtcagccc gtaagcaatg
     9481 cccgaacccg ccaaagccgc gctgacaacc aaaagataaa ccgttcccgt caataattcg
     9541 atgattaaga cggcaacagc ggcaacaaac catacagtca tacatttccc cacaaagcgc
     9601 gtcgtttgac aaaataacgc aatatcagca gtatagccga atttgaaagg atagggcaga
     9661 tatggacact tggcacgatg cactcggcgg cgaaaaacag cagccgtatt ttcaggaaat
     9721 tttaaatgca gtcaggcagg aacgtttgtc gggacaaatc atctatccgc cggcggcgga
     9781 tgtgttcaac gcattccgcc tgacagcgtt cgaccgggtc aaagccgtca ttctcggaca
     9841 agatccgtat cacggggcag ggcaggcgca cggtttggca ttttccgtcc ggcagggtat
     9901 ccgcataccg ccgtctttac tcaatatcta caaggagttg gaaaccgaca tcgaaggctt
     9961 ttccattccc gcgcacggct gtctgacagc gtgggcggag cagggcgtat tgcttctgaa
    10021 cacggttttg acggtgcgtg caggacaggc gcattcgcac gcccttttag gctgggaacg
    10081 ctttaccgat accgtcatca ggcagcttgc gacacaccgc aagcaccttg tcttcatgtt
    10141 gtggggtggg tatgcacaac aaaaagggag gctgatagac agtcaaaatc atttgatatt
    10201 gaccgcaccg catccgtctc ctctgtcggc atatcgcggt tttttcggct gccgccattt
    10261 ttcacaggca aacagctatt tgagccggca cggtatcgat ccgataaact ggaagctgtg
    10321 aatgccgtct gaatgccaag ttgcttaaac tgcacttatg gaaccagtca atctacggtg
    10381 tggatgcagt tatcgttacc catacccacg aagaccattg gggcgaaacc gccgcacgtt
    10441 ccattccgaa aaacctgccc gtatatgtgc agcaccaagc cgacgcggca aaaatccgca
    10501 gccaaggatt tactgatgta cgcgtgttga acggcagcac tgtcttcaac ggcgtaacca
    10561 tcagcaaaac cggcggcgta catggtacag aagccatgta tgccaacccg cagctagccg
    10621 aaatcttagg tgatgcaatg ggtgtagtat tccaaagcag cggacacaaa accgcttata
    10681 ttatgggtga tactgtgtgg acggcagatg taaacaaagc attgaaccgc tacaaacccg
    10741 attatctgat tatgaacacg ggctacgcgc tgatttcagg cattaccgta cacatggata
    10801 ccgtgaatca taccgccgtc agccgcaccg atatgcgtaa atttatacgc ggtcaaggca
    10861 ttgaaagccg tgtgaacgtt ccagaagacg gagaaatcct gaaactggat tgataaacga
    10921 cacattaccc taagcagcct gcaccttgtt ttcaaagcgc aggctgcttt cagacgacct
    10981 caaaagcagc ctgcacttta aaattccaag ttgcgccatc ggccccctca cttctcgccc
    11041 gtaatcatct cttgctgtcg cgccacaatt tttgccgcca tttccaaaaa caacttttgt
    11101 tcgtttgccg acaaatccga caaagccgtt tggttgatgg cttgggcaat ttccgtggac
    11161 tgctgctgca aggcgcgagc ttgctccgtc agcataatca ggcggctgcg cgcatcgtcg
    11221 ggattcggtt cgcgcgtaat cagtccgtcg cgctccatcc gcgccaaagt gttggcaatc
    11281 gttgcctgct tcaaatcggc gcgttccacc aattcctgct ggctcaaacc gtctttttgc
    11341 cacagttcca gcaatatcgg aaattgcgcg ggggcgatgc ccaaaggctt taaaccttcg
    11401 cccaataaaa tggcaaattg gcgggcaatg tggttcatca aatagcctgc cgattcagtt
    11461 ttgaaaactt cgtccacttt gttttctttc aaatcaaatt gttgcggatt atatcacaaa
    11521 tatagcttgc tatcttaata catagcacgc tatacttatt gcagcttaat agcttgctat
    11581 ctaaacactt tcagacgacc tatcttaaat gttcaagaac acttatgaac ttcaatactt
    11641 taaagaaggt tttcctatct gtaagccata ccgaaatccg actaaccctt tatcaagaga
    11701 aagcatcatg aaacccgaca ctttgcaaag ctacggctca acaacccgct tcctgcattg
    11761 gacaatagca gcttgctacc tgtttatgtt cgctaccgtc attgcgtgga atatcgacga
    11821 aaacctgaaa tttctaatca attcgcacaa agcagtcgga atcctgctgc tgatattgtc
    11881 tgtttggcgc gtagcaactg tatttttcac cccgtcgggc aaaaatacca aaactcaaat
    11941 caagccgtcc ggataccgtt ttcggcagta tcgttttcgg caaaataatc acgcatccgg
    12001 gca
//
LOCUS       DAXIFS010000047        11841 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.047, whole genome shotgun sequence.
ACCESSION   DAXIFS010000047 DAXIFS010000000
VERSION     DAXIFS010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11841
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.047"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            97..813
                     /locus_tag="ACFOCA_000908"
     CDS             97..813
                     /locus_tag="ACFOCA_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HFC6987647.1"
                     /translation="MNFENDDIIHAPTTSSLILEERHDSELFRVYALILDGITDQVLL
                     PGKKLTESELCRQMVCSRNTVRGALSLLAHDKIVDLQPNRGAFVHVPDLKEMQDVFNA
                     RIEMETMILNILADLPDLETRLKPLYAMIRREEEASGRGDRVGWNRLSNAFHVELARL
                     VGNDVLFDIMNTLCARSSLIVAVAGVHREEKHAINTHTHSEHREILDLLLAGRRNRVV
                     KILRRHLGNCMERLEKTLED"
     gene            962..1864
                     /locus_tag="ACFOCA_000909"
     CDS             962..1864
                     /locus_tag="ACFOCA_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HFC6987648.1"
                     /translation="MDSLMTLLSVLVPMFAGFFIRVPKPYLPALDKVLSVLVYAVLLL
                     IGVSLSRVEDLGSRLDDMALTVLWLFVCTVGANLLALAVLGKLFPWRIKGKGKGVSVG
                     VSGSVGQLGCVLLGFAFGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGVSLRQVL
                     VNRRGIRLSVWFMLSSLSGGLLFAASTDGVSWTKGLAMASGFGWYSLSGLVMTEAYGA
                     VWGSIMLLNDLARELFALAFIPLLMKRFPDAAVGVGGATSMDFTLPVIQGAGGLEVVP
                     VAVSFGVVVNIAAPFLMVVFSTLG"
     gene            1907..2680
                     /locus_tag="ACFOCA_000910"
     CDS             1907..2680
                     /locus_tag="ACFOCA_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HFC6987649.1"
                     /translation="MKPKIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIREL
                     EEAGSLKRHHGGASSGGNLPEGLPADRQTRCQNEKNAIARLIAEHIPDGSSLFVSIGT
                     TMEAVVSELVRRRGSLRVITNNIHAASIASARTDYTVIITSGVVRPLDGGITGVATVD
                     FINQFKVDYAVMSTHGVESDGSLLDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNAL
                     VRLGDITAFDKVFTDRLPDTAMQKMLKEAGVECLIADAV"
     gene            2792..4480
                     /locus_tag="ACFOCA_000911"
     CDS             2792..4480
                     /locus_tag="ACFOCA_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HFC6987650.1"
                     /translation="MLNKDQFADNHFIRTFIEEDLKSGKHETIQTRFPPEPNGYLHIG
                     HAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEYVNAIKEDVEWLGFHWAGEPRFAS
                     NYFDQLYDYAVGLVKDGKAYVDDLTPEEMREYRGTLTEAGKNSPYRDRSIEENLDLFT
                     RMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIRRAHHHNTGDKWCIYPMYDYTHC
                     ISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPAPHATRPRQYEFSRLELLYTITSKRK
                     LNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLFAKRAGISKSENIVDMSVLEGA
                     IREELENSAPRLMAVLNPLKVTLTNFETGRTQSRRAAFHPNHEEMGEREVPISQTIYI
                     EADDFAENPPKGFKRLIPGGEVRLRHGYVIKCDEVVKDEAGNVVELKCSIDHDTLGKN
                     PEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTVERPDAVRGEDGEYLPFTDFLNPESVK
                     EITAYAEPAAKDLPAESRWQFERIGYFVTDRKDHGKDTPVFNRTVTLKDSWQPK"
     gene            4573..5529
                     /gene="gshB"
                     /locus_tag="ACFOCA_000912"
     CDS             4573..5529
                     /gene="gshB"
                     /locus_tag="ACFOCA_000912"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HFC6987651.1"
                     /translation="MKVLFIADPMASFKTYKDTTYAMMREMAKRGWRLFHTLSGELSV
                     KNGLVVADASAFEFLGAQDDHDKNWFAAADKVQTALKAFDAVIMRTDPPFDMQYLYAT
                     QLLTLAEQQGAKVFNSGQAMRDFNEKLAILNFSRFTAPTLVTTRSADVRAFLKEHGDI
                     IIKPLDGMGGMGIFRLTEKDPNIGSILETLMRLDSRTIMAQRYIPEIVHGDKRILIIG
                     GEVVPYALARIPQNGETRGNLAAGGRGVAQELDGRDREIAETLAPELKRRGILLAGLD
                     VIGSNLTEVNVTSPTGFQEIMKQKGFDVAAMFADAVAAWSVR"
     gene            5841..6224
                     /locus_tag="ACFOCA_000913"
     CDS             5841..6224
                     /locus_tag="ACFOCA_000913"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFC6987652.1"
                     /translation="MEPSSYAAEKKGKGGIRRVINAFGYSIDGIAAAYRYEAAFRQVL
                     WLNVLLVCAAFFWVSETAVRLPLIIASFVSVIVELFNTAVEAAVDHTSTEKHELAKRA
                     KDAGSAAQLFAMLMLAAVWLSALFG"
     gene            6339..6812
                     /locus_tag="ACFOCA_000914"
     CDS             6339..6812
                     /locus_tag="ACFOCA_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFC6987653.1"
                     /translation="MKKLLAAVMMAGLAGAVSAAGVHVEDGWARTTVEGMKIGGAFMK
                     IHNDEAKQDFLLGGSSPVADRVEVHTHINDNGVMRMREVKGGVPLEAKSVTELKPGSY
                     HVMFMGLKKQLKEGDKIPVTLKFKNAKAQTVQLEVKIAPMSAMDHGHHHGEAHQH"
     gene            6938..8041
                     /gene="mnmA"
                     /locus_tag="ACFOCA_000915"
     CDS             6938..8041
                     /gene="mnmA"
                     /locus_tag="ACFOCA_000915"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFC6987654.1"
                     /translation="MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWED
                     DDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDV
                     LCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLK
                     PFQLERAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTD
                     NGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDH
                     PLLYTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELVFDEPQW
                     AVTPGQSAVLYDGDICLGGGIIQTTDKPVIITR"
     gene            8112..9782
                     /locus_tag="ACFOCA_000916"
     CDS             8112..9782
                     /locus_tag="ACFOCA_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFC6987655.1"
                     /translation="MEKIWLDSYEKGVSAEIDITQYNSISDVFRQSVEKFARLPAFQN
                     MGKTLTYAETGKLATDFASYLQNVLKLPRGERVAIMMPNVLQYPIALFGILQAGLVAV
                     NTNPLYTPRELEHQLKDSGTTAIIVLENFANTLELVLPRTQIKHVIVASVGEMFGLLK
                     GSLINFIIRKIKKMVPEYRIRETVSFQTALKEGAKHVFQPVALNREDTALLQYTGGTT
                     GVAKGAVLSHGNICANMLQAKEWIKNQLREGKETVIAALPLYHIFALTVNLMIFANAG
                     SKIILITNPRDMKGFIGELKKQRINVFIGVNTLFNAMVNRPDFAEVDFSELRLTLGGG
                     MATQKAVAEKWKKITGTPIVEAYGLTEASPGVCCNPLNIESYSGSIGLPVSSTEVELR
                     DANGKEVPVGQPGELWVKGPQVMQGYWNRPEETAKAIDARGFLETGDIAVMDEKGWLK
                     LVDRKKDLIVVSGFNVYPNEIEEVIAHHGKVMEVACIGVPDEKTGEALKVFVVRKDPS
                     LTKEELIAFCRTELTAYKVPKDIEFRDELPKSNVGKILRRELRQSTGK"
     gene            9894..11528
                     /locus_tag="ACFOCA_000917"
     CDS             9894..11528
                     /locus_tag="ACFOCA_000917"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFC6987656.1"
                     /translation="MTKFIFVTGGVVSSLGKGIAAASIAAILESRGLNVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDSTMTRRNSFSTGQVYENVIAKE
                     RRGDYLGGTVQVIPHITDEIKRRIHEGAAGYDVAIVEIGGTVGDIESLPFLEAIRQMR
                     SQLGRNNTLFAHLSYVPYIAAAGEIKTKPTQHTVKEMLSIGLQPDILICRMDRTMPAD
                     ERRKIALFCNVEERAIVGSYDVDSIYECPEMLHDQGIDNIITEQLQLNVQQADLTAWK
                     KIVHAIQNPKHTVKIAMVGKYVDLTESYKSLIEALKHAGIHTETDVQITFVDSESIEK
                     NNGDVSMLKDMDAILVPGGFGSRGVEGKIAAVRYARENNVPYLGICLGMQIALIEYAR
                     DVAGLKGANSTEFDLKCAAPVVALIDEWQTADGSVETRDESADLGGTMRLGAQEVELK
                     AGSLAAKIYGSEHIRERHRHRYEVNNNYVPTLEQAGLVIGGVSAGRERLVETIELPNH
                     PWFFACQFHPEFTSNPRKGHPLFTAFVKAALNNKKA"
BASE COUNT         2931 a         3199 c         3133 g         2578 t
ORIGIN      
        1 atttgtgcaa tgctttaatt cctctgacac gatttgaaac acagccgcct taaaacatct
       61 taaaaaattt gaaagcgtaa aaatacggaa aacatcatga actttgaaaa cgacgacatt
      121 atccatgcgc cgaccacgtc ttccctgatt ctcgaagagc ggcacgattc ggagctgttc
      181 cgtgtttacg ccctgatttt ggacggcatt accgatcagg tgctgctgcc cggcaaaaag
      241 ctgaccgaat ccgaactttg ccgtcagatg gtgtgttcgc gcaacaccgt ccgcggcgcg
      301 ctgtcgcttt tggcgcacga caagattgtc gatttgcaac ccaacagggg cgcgttcgtc
      361 cacgttcccg atttgaaaga aatgcaggat gtgttcaatg cgcgcatcga aatggagacg
      421 atgattttga atatcctcgc agatttgccg gatttggaaa cgcgcctcaa gccgctttat
      481 gcgatgataa ggcgcgaaga agaggcttcc ggcaggggcg accgcgtcgg ctggaaccgc
      541 ctgtccaatg ccttccacgt cgaactggcg cgcctggtgg gcaacgatgt gctgttcgac
      601 attatgaaca cgctgtgcgc gcggtcttcc ctgattgtcg ccgtggcggg cgtgcatcgc
      661 gaggaaaaac acgccatcaa tacgcatacg cattccgaac accgcgaaat cctcgacctg
      721 ctgctggcgg gcaggcgcaa ccgcgtggtc aaaatcctgc gccgccattt gggcaactgt
      781 atggaacgct tggaaaagac tttggaagat tgaatgccgg agcggataag ccgcctgaac
      841 cttcaggcgg ttttttaatg gcgaacctga tgccgtctga aatatggatg cgggtatctg
      901 caattttcag acggcaattt ttaaaccgca tatatcatgc ggcaataaag gaggtcagga
      961 gatggacagc ctgatgacat tgctttcggt attggtaccg atgttcgccg gattttttat
     1021 ccgtgtgccc aagccttacc tgcccgcttt ggacaaggtg ctgtcggttt tggtgtatgc
     1081 cgtgctgctg ctgatcggcg tatcgttgtc gcgcgtggag gatttgggtt cgcggttgga
     1141 cgatatggcg ttgacggttc tgtggctgtt tgtttgtacg gtcggggcga acctgcttgc
     1201 tttggcagtg ttgggaaagt tattcccgtg gcggataaag gggaaaggga agggcgtttc
     1261 ggtcggcgtg tcgggcagtg tggggcagct cggatgcgtg ctgctcggat ttgcattcgg
     1321 caaactgatg cgcgatattt ggatgccgtc tgaaagcgcg ggcatgtatt gtctgatgct
     1381 gctggtgttc ctcatcggcg tacagctcaa aagcagcggc gtatcgttgc ggcaggtttt
     1441 ggtcaaccgc aggggtattc ggttgtcggt ctggtttatg ctttcatctc tttcgggcgg
     1501 gctgctgttt gccgcatcga cagacggtgt gtcgtggacg aaaggtttgg cgatggcttc
     1561 cggcttcggt tggtattccc tctcgggttt ggtcatgacc gaggcttacg gcgcggtatg
     1621 gggcagcatc atgctgctga acgatttggc acgagagctg tttgcactgg catttatccc
     1681 gctgctgatg aagcgttttc cggatgcggc ggtgggggtt ggcggtgcga ccagtatgga
     1741 ttttacattg cccgtgattc agggtgcggg cggtttggaa gtcgtgccgg tagcggtcag
     1801 cttcggcgtg gtggtcaata ttgccgcccc gtttctgatg gtggtgtttt ccacgctggg
     1861 ctgaacacgg taaaatcggc atcccgatgc aaggaggcag aaaacgatga aaccgaaaat
     1921 ccaaaggcac ggagagattt taagccttgt ccgccggcat cagtttatgt cggtggacga
     1981 gcttgccgcc gcattggacg ttaccccgca gacgatacgc cgcgacatcc gcgagttgga
     2041 ggaggccggc agcctgaaac gccatcacgg cggcgcatct tcgggcggaa acttgccgga
     2101 gggcctgccc gccgaccgcc aaacccggtg tcaaaacgaa aaaaacgcca ttgcccggct
     2161 gattgcggaa cacatccccg acggttcgtc gctgtttgtc agtatcggca cgacgatgga
     2221 ggccgtggtg tcggagctgg tcaggcggcg cggcagcctg agggtgatta ccaacaatat
     2281 ccacgccgcc tcgattgctt cggcgcggac ggattatacg gtcattatca cttctggagt
     2341 cgtccgtcct ttggacggcg gtattaccgg cgtggcaacc gtcgatttta tcaaccagtt
     2401 caaagtcgat tatgccgtga tgagtacgca cggcgtggaa agcgacggtt cgcttttgga
     2461 cgacgactac aaagaagtca gcgtgatgca ggcgatgatt gccaatgcgc gcgtccgctt
     2521 cctcggcgtg gaccacagta aattccgcag caacgcgctg gtcaggctcg gcgacattac
     2581 ggcgtttgac aaagtattta ccgaccggct gcccgatacc gcgatgcaga agatgctgaa
     2641 agaggcgggg gtggaatgcc tgattgccga tgccgtctga acgctatgtc aaagcgcgca
     2701 agtcgggtac aataaacaca tcatcaaacc gcttcagacg gcataaggaa ccgccccaat
     2761 gccgtctgaa gccatctgtt caaagaaaac tatgctcaat aaagaccaat ttgcggacaa
     2821 ccattttatc cgcaccttca tcgaagaaga cctcaaaagc ggcaaacacg aaaccatcca
     2881 aacccgtttt ccgccggagc ccaacggcta cctgcacatc ggacacgcca aatccatctg
     2941 cctgaacttc ggtttggcgt atatttacga cggcttgtgc aacctgcgtt ttgacgatac
     3001 caaccccgaa aaagaaaacg acgaatacgt caacgccatc aaagaagacg ttgagtggct
     3061 cggtttccat tgggcgggcg agccgcgttt cgcttccaac tatttcgacc agctttatga
     3121 ctacgccgtc ggtttggtta aagacggcaa agcgtatgtc gatgatttga cgccagaaga
     3181 aatgcgcgaa taccgcggta cgctgaccga agcaggcaaa aacagccctt atcgcgaccg
     3241 cagtatcgaa gaaaacctcg acctgttcac gcgcatgaaa aacggtgagt tccccgacgg
     3301 cagcaaaacc ctgcgcctga aaatcgacat ggcatccggc aacatcaata tgcgcgatcc
     3361 ggtcatctac cgcatccgcc gcgcccatca ccacaacacc ggcgacaaat ggtgcatcta
     3421 tccgatgtac gactacacgc attgtatttc cgatgccatc gaaggcatca cgcattcctt
     3481 gtgtacgctc gaatttgaag cccatcgtcc gctgtatgac tgggtgttgg acaacatccc
     3541 cgcgccgcac gccacacgtc cgcgccaata cgagttttca cgcttggagc ttttgtacac
     3601 cattacctcc aaacggaaat tgaatcagtt ggttgtggaa aaacacgttt ccggctggga
     3661 cgatccgcgt atgccgacca tttccggtat gcgccgacgc ggctacacgc ccgaagggct
     3721 gcgcctgttt gccaaacgcg ccggtatttc caaatctgaa aacatcgtcg atatgagcgt
     3781 gttggaaggc gcgattcgcg aagagttgga aaattccgcc ccacgcctga tggcggtgtt
     3841 gaacccgctc aaagtgaccc tgaccaactt tgaaaccggc agaacccaaa gccgccgtgc
     3901 cgcgttccat ccgaaccacg aggaaatggg cgagcgcgaa gtacctattt cacaaaccat
     3961 ctatattgaa gccgacgact ttgccgaaaa tccgcccaaa ggcttcaaac gcctgattcc
     4021 cggcggcgaa gtacgcttgc gccacggcta tgtcatcaag tgcgatgaag tcgtcaaaga
     4081 cgaagcaggc aatgtggttg aactcaaatg cagcatcgac cacgacacct tgggcaaaaa
     4141 tccagaaggc cgtaaagtta aaggcgtgat tcattgggtt tccgccgaac acgccgccga
     4201 aatcaaagtc cgtctgtacg accgcctctt taccgtcgag cgtcccgatg ccgtgcgcgg
     4261 cgaagacggc gaatacctgc cgttcaccga tttcctcaat ccggaatccg tcaaggaaat
     4321 caccgcctac gccgaacctg ccgccaaaga tttgccggca gaaagccgtt ggcagttcga
     4381 gcgtatcggc tacttcgtaa ccgaccgtaa agaccacggc aaagacacgc cggtgtttaa
     4441 ccgcacggtc acgctgaaag attcttggca gcctaagtaa aaccccatcc ttgccgtctg
     4501 aatattgttc ggacggcatt tcccctttgc ccgcgaaatg cggcacattc ggcacaccgg
     4561 aaaggaaata tgatgaaagt cctctttatc gccgacccga tggcaagttt caaaacctac
     4621 aaagacacca cctacgccat gatgcgcgag atggcaaaac gcggttggcg gctgtttcat
     4681 accttgagcg gggaattgtc ggttaaaaac ggtctggtgg ttgctgatgc gtctgctttt
     4741 gagtttctcg gcgcacaaga cgaccacgac aaaaactggt ttgccgccgc cgacaaagtt
     4801 cagacggcat tgaaagcatt tgatgccgtg attatgcgta ccgatccgcc gttcgatatg
     4861 caatacctct acgccacaca gcttctgacg ctggcggagc agcagggcgc gaaggtcttt
     4921 aacagcggac aggcgatgcg tgatttcaat gaaaaactgg cgattttgaa cttcagccgc
     4981 tttaccgcgc ccacgctggt aacgacccgt tccgccgatg tccgcgcatt tttgaaagaa
     5041 cacggcgaca tcatcattaa accgctggac ggtatgggcg gtatgggtat tttccgcctg
     5101 accgaaaaag atcccaacat cggcagcatc ctcgaaaccc tgatgcggct tgattcccgc
     5161 accattatgg cgcaacgcta cattcccgaa atcgtacacg gtgacaaacg catcctgatt
     5221 atcggcggcg aagtcgtccc ctatgctttg gcgcgtatcc cgcaaaacgg cgaaacacgc
     5281 ggcaaccttg cggcaggcgg acgcggcgtg gcgcaggaat tggacggacg cgaccgcgaa
     5341 attgccgaaa cgctcgcccc cgaactcaaa cggcgcggca tcctgctggc cggtttggac
     5401 gttatcggca gcaacctgac cgaagtcaac gtaaccagcc cgaccggatt ccaagaaatt
     5461 atgaaacaaa aaggtttcga cgtggcggca atgtttgccg atgccgttgc cgcgtggtcg
     5521 gtacgttaaa ccgatgccgt ttgaaaggct tttgcttcac aaccgtttgg tttgttcggg
     5581 caggcagggt tttccctcag ccggcaggga tgcggttaat gccgtacgga caccccgccg
     5641 ccccgttttc agacggtata tatagtggat taacaaaaat caggacaagg cggcgaagct
     5701 gcagacagta caaatagtac ggaaccgatt cactcggtgc ttcagcacct tagagaatcg
     5761 ttctctttga gctaaggcgg ggcaacgccg tacaggtttt tgttaatcca ctatattgag
     5821 aacattttga aaggataccg atggaacctt cctcctacgc ggcagaaaaa aaaggcaaag
     5881 gcggcatcag gcgcgtcatt aacgcattcg gctattcgat agacggcatc gccgccgcct
     5941 accgttacga agcggcattc cgtcaggttt tgtggctgaa cgtactgctg gtgtgcgcgg
     6001 catttttttg ggtttccgaa accgccgtcc gcctgccgtt gattatcgcg tcttttgtgt
     6061 cggtcattgt cgaactgttc aacaccgccg tcgaagctgc cgtcgatcat acttcgaccg
     6121 aaaaacacga gctggccaaa cgcgccaaag acgcaggttc tgccgcacaa ttgttcgcga
     6181 tgctgatgtt ggcggcggtt tggctgtctg ccctgttcgg gtaaaacgct tgcagcagga
     6241 tttgtaatcc tttaggatta gtatgtggta tttattattc acttaatcca ctataagatt
     6301 aagcacattc cccgtctgat attataagga gcagaaagat gaaaaaatta ttggcggccg
     6361 tgatgatggc aggtttggca ggcgcggttt ccgccgccgg agtccacgtt gaggacggct
     6421 gggcgcgcac caccgtcgaa ggtatgaaaa taggcggcgc gttcatgaaa atccacaacg
     6481 acgaagccaa acaagacttt ttgctcggcg gaagcagccc cgttgccgac cgcgtcgaag
     6541 tgcataccca catcaacgac aacggcgtga tgcggatgcg cgaagtcaaa ggcggcgtgc
     6601 ctttggaggc gaaatccgtt accgaactca agcccggcag ctatcacgtg atgtttatgg
     6661 gtttgaaaaa acaattaaaa gagggcgaca agattcccgt taccctgaaa tttaaaaacg
     6721 ccaaagcgca aaccgtccaa ctggaagtca aaatcgcgcc gatgtcggca atggaccacg
     6781 gtcatcacca cggcgaagcg catcagcact aatctgctga aaatatttga aatgccgtct
     6841 gaaaaagccc gggctttcag acggcatttt tatgaccgcc tttaaaatgt gttaaaatct
     6901 gcctttaaaa accgccgttt ccaaccatat tctacgcatg aatacgacag caaacccttc
     6961 caatatcatc gtcgggctct ccggcggtgt cgattcttcc gtaaccgccg ccctgctcaa
     7021 gcagcagggt tatcaagtgc gcggtgtgtt catgcagaac tgggaagacg acgacaacga
     7081 cgaatattgc agcatcaaac aggattcgtt cgatgccatc gccgttgccg atattatcgg
     7141 catcgacatc gacatcgtta atttcgccgc gcaatataaa gacaaagtct ttgcttattt
     7201 tcttcaggaa tacagtgcgg ggcgcacgcc gaatcccgat gtgttgtgca acgccgaaat
     7261 caaattcaaa tgctttttgg attacgccgt agggcagggc gcggatacca tcgccaccgg
     7321 acactatgcg cgcaaagaag tccgcaacgg cgtgcattac ctgctcaaag gtttggatcg
     7381 aaacaaagac caaagctatt tcctctaccg cctcaagcct ttccaactcg agcgcgcgat
     7441 ttttccgttg ggcggtttgg aaaaacctga agtccgccgc cttgccgccg aatttaattt
     7501 gccgaccgcc gccaaaaaag acagcacggg catctgcttc atcggcgaac gcccgtttcg
     7561 cgagtttctg caaaaatacc tgccgaccga caacggtaaa atggttacgc ccgaagggaa
     7621 aaccgtcggc gaacacgtcg ggctgatgtt ctacacgctc ggacagcgca aaggtttggg
     7681 catcggcggc gcgggcgaac cgtggtttgt tgcggctaaa gatttgacga aaaacgaact
     7741 gattgtcgtg caaggacacg accatccgct gctctatacc cgcagccttg tgatgaacga
     7801 tttgagtttc acgctgcccg aacgcccgaa ggcaggacgc tatacctgca aaacgcgtta
     7861 ccgtatggcg gacgcgcctt gtgagttgcg ctatttggat gaagaaaccg ccgagctggt
     7921 gtttgacgaa ccgcaatggg cggttacgcc gggccagtct gccgtgctgt acgacggcga
     7981 tatctgtttg ggcggcggca tcatccaaac gaccgacaaa cccgtcatca tcacgcgata
     8041 aaggtaatgc cgtctgaaac ggttttcaga cggcattgtt ccgctcaatt ccactttaaa
     8101 gaccgatacc tatggaaaaa atctggttag acagttacga gaagggcgtc agtgccgaaa
     8161 tcgatatcac gcaatacaat tccatcagcg atgtattccg ccaaagcgtg gaaaaatttg
     8221 ccaggctgcc cgcttttcaa aatatgggca aaacgctgac ttatgccgaa accggcaaac
     8281 tggcgactga tttcgcctct tatctgcaaa acgtcctcaa gctgccgcgc ggcgaacgtg
     8341 ttgccattat gatgccgaac gtattgcaat acccgatagc ccttttcggc attttgcagg
     8401 caggtttggt ggcggtgaac accaatccgc tctatacgcc gcgcgagctg gagcatcagc
     8461 tgaaagacag cggcacgacc gccatcatcg ttttggaaaa tttcgccaac acgctggagc
     8521 tggtgctgcc gcgcacgcag atcaaacatg tcatcgtcgc ctccgtcggc gaaatgttcg
     8581 ggctgcttaa aggttcgctg atcaatttca tcatccgaaa aatcaagaaa atggttcccg
     8641 aataccgtat tcgggaaacc gtttcctttc agacggcatt gaaagagggg gcgaagcacg
     8701 ttttccaacc tgtcgcatta aaccgcgaag ataccgcgct gttgcaatac acgggcggca
     8761 cgacaggtgt tgccaaaggg gcggtgctga gtcacggcaa catctgtgcc aatatgcttc
     8821 aggcaaaaga atggattaaa aaccagttgc gcgagggcaa agaaaccgtt atcgctgccc
     8881 tgccgctgta ccatattttc gccttaaccg tgaatctgat gatttttgcc aatgccggct
     8941 caaaaatcat cctgattacc aacccgcgtg atatgaaagg ctttatcgga gaactgaaaa
     9001 aacagcggat taatgtattt atcggcgtaa acacactgtt taacgcgatg gttaaccgtc
     9061 ctgattttgc cgaagtcgat ttttcagaat tgcggctgac tttgggcggc ggtatggcga
     9121 cccaaaaagc cgttgccgaa aaatggaaaa aaattaccgg tacgcctatt gtcgaagcct
     9181 acggtctgac cgaagccagc ccaggcgtgt gctgcaaccc cttaaacatc gaatcataca
     9241 gcggcagcat cggtttgccc gtctcgtcca ccgaagtcga actgcgcgac gcaaacggca
     9301 aagaagtccc cgtcgggcag ccgggcgaat tgtgggtaaa aggccctcaa gtgatgcaag
     9361 gctactggaa ccgtcccgaa gaaaccgcta aagccataga cgcgcgcggt ttcttggaaa
     9421 ccggcgatat tgccgtcatg gacgaaaaag gctggttgaa gctggttgac cgtaagaaag
     9481 acctcattgt tgtttccgga ttcaatgttt atccgaacga aatcgaagaa gtcatcgcgc
     9541 atcacggcaa agtgatggaa gttgcctgta tcggcgttcc cgacgaaaaa accggcgagg
     9601 cactcaaagt attcgtcgtc agaaaagacc cgtctttgac gaaagaagaa cttatcgcct
     9661 tttgccgcac cgaattaacc gcatataaag taccgaaaga tatcgaattc cgcgacgagt
     9721 tgcccaagtc caacgtcggc aaaatcctgc gccgcgagtt gcggcaaagt accgggaaat
     9781 aaagaaaaga tgccgtctga aaacagccgt ccaccgttca gacggcatcc gtccgtttgc
     9841 cagaaccgcg cgcttcacgt taaaatcacg cattccaata tgggtattcc atcatgacca
     9901 aattcatttt cgtaaccggc ggcgttgtct cctcactggg taaaggtatc gccgccgctt
     9961 ctattgccgc catcctcgaa tcgcgcggct tgaacgttac catgctcaag ctcgatcctt
    10021 atatcaacgt cgatcccggc acgatgagcc cgttccaaca cggcgaagtg ttcgtaaccg
    10081 acgacggcgc ggaaaccgac ctcgacttgg gacactacga acgctttatc gattccacga
    10141 tgacccgccg caacagcttc agcacggggc aggtgtacga aaacgtcatc gccaaagaac
    10201 gacggggcga ctatttgggc ggcacggttc aagtcattcc gcacattacc gacgaaatca
    10261 aacgccgcat ccacgaaggc gcggcaggtt acgatgtggc gattgtcgaa atcggcggta
    10321 cagtcggcga tatcgaatct ttgccattct tggaagccat ccgccagatg cgaagccagt
    10381 tgggacgcaa caacaccctg ttcgcccact tgagctacgt cccctacatc gccgctgcag
    10441 gcgaaatcaa aaccaagccg acccagcaca ccgttaaaga aatgttgagc atcggtttgc
    10501 aacccgacat cctgatttgc cgtatggaca ggacaatgcc tgcggacgaa cgccgcaaaa
    10561 tcgccttgtt ctgcaacgtg gaagaacgcg cgattgtcgg cagctacgat gtggacagca
    10621 tctacgaatg ccccgaaatg ctgcacgacc aaggcatcga caacatcatt accgagcagt
    10681 tgcagcttaa tgtgcagcag gcggatttga ccgcgtggaa aaaaatcgtc cacgccatcc
    10741 aaaacccgaa acacaccgtc aaaatcgcca tggtcggcaa atacgtcgat ttgaccgagt
    10801 cctacaaatc gctgatcgaa gccttgaaac acgcaggcat tcacaccgaa accgacgtac
    10861 aaattacctt tgttgacagc gaaagcatcg agaaaaacaa cggcgacgtt tccatgctta
    10921 aagacatgga tgccatcctc gttcccggcg gttttggttc gcgcggcgtg gaaggcaaaa
    10981 tcgccgctgt gcgctatgcc cgcgaaaaca acgtgccata cttgggcatc tgcctcggta
    11041 tgcagattgc gctgatcgaa tacgcccgcg acgtggcagg tttgaaaggt gcgaattcca
    11101 ccgagttcga cctcaaatgc gccgcccccg tcgttgccct gattgacgaa tggcaaactg
    11161 ccgacggcag cgtcgaaacc cgcgacgaat ccgccgattt gggcggcacc atgcgtttgg
    11221 gcgcgcaaga agtcgaattg aaagcaggca gcctcgccgc caaaatctac ggcagcgaac
    11281 acatccgcga acgccaccgc caccgctacg aagtcaacaa caactacgtt cctacgctgg
    11341 aacaggcagg tttggtcatc ggcggcgtat ccgccggacg cgaacgcttg gtcgaaacca
    11401 tcgaactgcc gaaccatcct tggttcttcg cctgccagtt ccaccccgag tttacctcca
    11461 atccgcgcaa agggcatcct ttgttcaccg cgtttgtcaa agctgcgttg aacaataaaa
    11521 aagcctgata aagcgttact tgatgatcaa aatgccgtct gaaagcctga atgaagactt
    11581 tcagacggca tttttgcaaa tcggggatca taaaagccat caatttaatt tttatggttt
    11641 tatctaatat tgaccaactg aatattgtta agcggggcgt gaaactcaag ttgagacctt
    11701 tgcaaaattc cccaaaatcc cctaaattcc caccaagaca tttaggagca ccttcttccg
    11761 gcaaaccgcc caagccatga ttgccaaaca catcgaccgt ttcccgctat tgaagttgga
    11821 ccgggtgatt gattggcagc c
//
LOCUS       DAXIFS010000048        11533 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.048, whole genome shotgun sequence.
ACCESSION   DAXIFS010000048 DAXIFS010000000
VERSION     DAXIFS010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11533
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.048"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            121..543
                     /locus_tag="ACFOCA_000918"
     CDS             121..543
                     /locus_tag="ACFOCA_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein Gly1ORF1"
                     /protein_id="HFC6987657.1"
                     /translation="MKKTFLSAVLLLSAATQTVWADTVFSCKTDNNKYIEVQKINRNL
                     YEYSFGSAAKKEIAIRNSKADLLGRSDRWQGWGRGRWATMKFQNGEFMYTVDAGFDSV
                     THAVGSGVLVERRGKEIARFDCTSKTAQANFDDDDFAW"
     gene            561..1322
                     /locus_tag="ACFOCA_000919"
     CDS             561..1322
                     /locus_tag="ACFOCA_000919"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFC6987658.1"
                     /translation="METVKPIMLIVRPSGRAKDDVETCRRAEWQAEVLSPIEIETDKA
                     SLKRLPEMYARADAVFWVSPTAVETAVPYLNLSDGIKMHISVGQGSRRALERCLGRTV
                     IAPDDGNDSEAVLRLPVWNSLPEGARVLFVRGHGGRDFLMNALQEKGFRTEVAEVYFR
                     RHKPLNFQNFQTENIAAAYITSAELVQSLFAQVPPQFSRFFKSLLYFTHHPRIAEALK
                     REGVCSVETVPTLEAALSHSSISVSDGMVFPGTSN"
     gene            1337..2671
                     /locus_tag="ACFOCA_000920"
     CDS             1337..2671
                     /locus_tag="ACFOCA_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HFC6987659.1"
                     /translation="MGEPENKSSEPVREIQASKEMPSETSSPRKENETEVHIPAAPFI
                     VKQSGSNALAVCALVLAALGLGTSGFLFVQGQNVLKNQELAFNQKIDKAALGESENAA
                     LLKDNLNRQAAIQSELDRLDGNVKANGEQILEMQKSYRELTKGRADWLVDETETILNL
                     AAQQLVLTGNIQTAVGVLEHIDSRLSRFDQAELLPIKQAVSSDLAELKNRPYVDISGT
                     ALRLDRLETAVSGLPLILDGVLKPGVQVKNEAASASWWQNVWEKSLGTLKGLVEIRRL
                     ENNDAMLISPEQAYFVRENLRLRLLDARTALMQRNSEVYQGDLNNAEAAVRQYFDAKS
                     PATQSWLKELAELKALDVRMTADDGLKNSLNAVRAYRDGTRMTAAENQEAEQAASEPA
                     NENTASEPAAASDVKTIEAPSLPSERKPEQPAKKQPVPEKAGRSPSAKGERA"
     gene            2668..3885
                     /locus_tag="ACFOCA_000921"
     CDS             2668..3885
                     /locus_tag="ACFOCA_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HFC6987660.1"
                     /translation="MKTVVWIVVLFAAAVGLALASGIYTGDVYIVLGQTMLRINLHAF
                     VLGSLIAVVVWYFLFKFIIGVFNIPEKMQRFGSARKGRKAALALNKAGLAYFEGRFEK
                     AELEASRVLVNKEAGDNRTLALMLGAHAAGQMENIELRDRYLAEIAKLPEKQQLSRYL
                     LLAESALNRRDYEAAEANLHAAAKMNANLTRLVRLQLRYAFDRGDALQVLAKTEKLSK
                     AGALGKSEMERYQNWAYRRQLADAADAAALKTCLKRIPDSLKNGELSVSVAEKYERLG
                     LYADAVKWVKQHYPHNRRPELLEAFVESVRFLGEREQQKAIDFADAWLKEQPDNALLL
                     MYLGRLAYGRKLWGKAKGYLEASIALKPSISARLVLAKVFDETGEPQKAEAQRNLVLA
                     SVAEENRPSAETH"
     gene            3960..5024
                     /gene="hemE"
                     /locus_tag="ACFOCA_000922"
     CDS             3960..5024
                     /gene="hemE"
                     /locus_tag="ACFOCA_000922"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFC6987661.1"
                     /translation="MTLLKNDTFLRALLKQPVEYTPIWMMRQAGRYLPEYKATRAKAG
                     SFLDLCKNTELATEVTIQPLERFDLDAAILFSDILTVPDAMGLGLYFAEGEGPKFKRA
                     MQHEADIAKLHVPDMEKLQYVFDAVTSIRKALDGRVPLIGFSGSPFTLACYMVEGGGS
                     KEFRTIKTMMYSRPDLLHKILDTNAQAVTAYLNAQIDAGAQAVQIFDTWGGVLSDAAF
                     KEFSLKYIRQIVAGLKRESEGRRVPVIVFAKGGGLWLESMAQIGADALGLDWTCNIGE
                     ARRRVGNQVALQGNFDPSALFGTPESIRAEVARILADYGHGSGHVFNLGHGINQHADP
                     EHAKILVDTVHELSRQYHGG"
     gene            5202..6581
                     /gene="radA"
                     /locus_tag="ACFOCA_000923"
     CDS             5202..6581
                     /gene="radA"
                     /locus_tag="ACFOCA_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFC6987662.1"
                     /translation="MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPK
                     NARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELDRVLGGGLVDGAVILLGGDPGIG
                     KSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
                     LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTK
                     DGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVS
                     NPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLA
                     MLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVF
                     GEIGLSGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEA
                     IDICRDSRE"
     gene            complement(6856..7335)
                     /locus_tag="ACFOCA_000924"
     CDS             complement(6856..7335)
                     /locus_tag="ACFOCA_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HFC6987663.1"
                     /translation="MKHILPLIAASALCISTASAHPASEPQTQNETAMTTHTLTSKYS
                     FDETVSRLETAIKSKGMDIFAVIDHQEAAHRNGLTMQPAKVIVFGTPKAGTPLMVKDP
                     AFALQLPLRVLVTETDGKVRAAYTDTRALIAGSRIGFDEVANTLANAEKLIQKTVGE"
     gene            complement(7467..7826)
                     /locus_tag="ACFOCA_000925"
     CDS             complement(7467..7826)
                     /locus_tag="ACFOCA_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6987664.1"
                     /translation="MNIKHLITAALIASAAFAAQAAPQKPLAAAQTAQHPAVWIDVRS
                     EQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAKAALQELKKAGYT
                     NVANHGGYEDLLKKGMK"
     gene            complement(7865..11479)
                     /gene="recB"
                     /locus_tag="ACFOCA_000926"
     CDS             complement(7865..11479)
                     /gene="recB"
                     /locus_tag="ACFOCA_000926"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HFC6987665.1"
                     /translation="MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLE
                     QKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAE
                     HHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
                     QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSR
                     PYLNFRRPQTDLPQARDAALASWQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELF
                     DALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRD
                     LDALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAET
                     LARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIY
                     AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESR
                     LSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNFKGCPLQ
                     SGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRA
                     GTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQT
                     HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNR
                     AIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAK
                     AQLSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQ
                     DSRETVRQTYDWEKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAE
                     FAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTAS
                     DGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEM
                     AEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRA
                     AAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHH
                     HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK
                     "
BASE COUNT         2520 a         3049 c         3418 g         2546 t
ORIGIN      
        1 tgccgcccta tgtgttgccc taatttggaa ggggttacac ccttttcaaa taaaatctga
       61 tgctgctgcc acgaaggacg gatgtccaag tggcggggtt ttaaccatta aggaaatacg
      121 atgaaaaaaa cgttcctttc tgccgtattg cttctgtcag ctgcgaccca aaccgtgtgg
      181 gcagatacgg tgttttcctg taaaacggac aacaacaaat atatagaagt tcaaaaaatt
      241 aaccgcaatc tttacgaata ttcgttcggc agtgcggcaa aaaaagaaat tgccatacgc
      301 aacagcaaag ctgatctgtt ggggcgttcc gacaggtggc aaggctgggg cagaggccgt
      361 tgggcgacga tgaaattcca aaacggcgaa tttatgtaca ccgtagatgc aggcttcgat
      421 tccgtgaccc atgcagtagg cagcggtgtc cttgtggagc gtaggggcaa ggaaatcgca
      481 cggttcgact gtacgtcgaa aaccgcgcag gcgaatttcg acgatgacga ttttgcctgg
      541 taatcggggc ggataaggcg atagaaacag tgaaacccat catgctgatt gtccgaccgt
      601 cgggcagggc gaaggacgat gtggaaacct gccgtcgtgc cgaatggcag gcggaagtgt
      661 tgagtccgat tgaaatcgaa accgacaaag caagcctgaa acggctgccg gaaatgtatg
      721 cccgtgcgga tgccgtgttt tgggtcagtc cgaccgccgt tgaaaccgcc gtcccgtacc
      781 ttaacctttc agacggcata aagatgcaca tttccgtagg gcagggcagc cgccgtgcat
      841 tggaacgctg tttgggcaga acggtcatcg cgcctgatga cggcaacgac agcgaggcgg
      901 ttttgcgcct gccggtttgg aacagtctgc ccgaaggtgc gcgcgtattg tttgtgcgcg
      961 gacacggcgg gcgggatttt ctgatgaatg ccttgcagga gaaaggtttt cggacggagg
     1021 tggcagaagt ctatttcaga cggcataaac ctttgaactt tcaaaatttc caaaccgaaa
     1081 atattgccgc cgcctatatt acgtccgcag aactcgtgca gtcgctgttt gcacaggttc
     1141 cgccgcaatt ttcccgattc ttcaaatcct tgctatactt tacccatcat ccgcgcattg
     1201 cggaggcatt gaagcgcgaa ggcgtgtgtt cggtcgaaac cgtccctacg ctggaagccg
     1261 cgctttccca ttcttccatt tccgtttcag acggcatggt ctttcccgga acctcaaatt
     1321 aataaggagc aaaacggtgg gcgaacctga aaacaaatca tccgaacccg tacgcgagat
     1381 acaggcatca aaagaaatgc cgtctgaaac ctcttcccca cgcaaagaaa acgaaacaga
     1441 agtacacatt cctgccgctc cttttatcgt caaacagtcc ggcagcaacg ctttggcagt
     1501 ctgcgccctg gtattggcgg cattgggttt gggtacaagt ggttttttgt ttgtccaggg
     1561 acagaatgtc ttgaaaaacc aagagctggc attcaaccaa aaaatcgaca aagccgcctt
     1621 gggcgagtcg gaaaacgccg ccctgttgaa agacaacctc aaccggcaag ccgccataca
     1681 atcagagctc gaccgtttgg acggaaacgt caaagcaaac ggcgaacaaa tcttggaaat
     1741 gcaaaaatcc tatcgcgagt tgaccaaagg acgcgccgat tggctggtgg acgaaaccga
     1801 gaccatactc aatctggcgg cgcaacagct ggtgttgacc ggcaatatcc aaacggcagt
     1861 cggcgtattg gagcatatcg acagccgcct gtcccgtttc gatcaggcag agcttctgcc
     1921 gatcaaacag gcagtcagca gcgacttggc ggaactgaaa aaccgtccct atgtcgatat
     1981 ttccggcacg gcattgcgcc tcgacaggct ggaaaccgcc gtatccggac tgccgctgat
     2041 tttggacggc gtattgaagc cgggcgtaca ggtgaagaac gaagccgctt ctgcttcatg
     2101 gtggcagaac gtatgggaaa aatccctcgg cacattgaag gggctggtcg aaatccgccg
     2161 tttggaaaac aacgatgcca tgctgatttc tcccgaacag gcatattttg tgcgtgaaaa
     2221 cctgcgcctc cgccttttgg atgcgcggac tgcattaatg cagcgcaaca gcgaagtcta
     2281 tcagggcgat ttgaacaatg ccgaagccgc cgtcagacag tatttcgatg ccaagtctcc
     2341 cgccacgcag tcgtggctga aagaactggc ggaattgaag gcgttggatg tgcgcatgac
     2401 ggcggatgac ggtttgaaaa acagcctaaa tgccgtccgc gcctatcgcg acggtacgcg
     2461 catgacggcg gcggaaaatc aagaagcaga acaggcggct tccgaaccgg caaacgaaaa
     2521 cacagcttcc gaaccggctg ccgcatcgga tgtgaagacc atagaagcac cgtccctgcc
     2581 ttcggaacgc aaaccggaac agcctgcaaa aaaacagccc gtaccggaaa aggcagggcg
     2641 ttcgccgtcc gctaaaggag aacgcgcatg aaaacggtag tctggattgt cgtcctgttt
     2701 gccgccgccg tcgggctggc attggcttcg ggcatttaca ccggcgacgt gtatatcgta
     2761 ctcggacaga ccatgctcag aatcaacctg cacgcctttg tgttaggttc gctgattgcc
     2821 gtcgtggtgt ggtatttcct gtttaaattc attatcggcg tattcaatat ccccgaaaag
     2881 atgcagcgtt tcggttcggc gcgtaaaggc cgcaaggccg cgcttgcctt gaacaaggcg
     2941 ggtttggcgt attttgaagg gcgttttgaa aaggcggaac tagaagcctc acgcgtgttg
     3001 gtcaacaaag aggccggaga caaccggact ttggcattga tgttgggcgc acatgccgcc
     3061 gggcagatgg aaaacatcga gctgcgcgac cgttatcttg cggaaatcgc caaactgccg
     3121 gaaaagcagc agctttcccg ttatcttttg ttggcggaat cggcgttgaa ccggcgcgat
     3181 tacgaagcgg cggaagccaa tcttcatgcg gcggcgaaga tgaatgccaa ccttacgcgc
     3241 ctcgtgcgtc tgcaacttcg ttacgctttc gacaggggcg acgcgttgca ggttctggca
     3301 aaaaccgaaa aactttccaa ggcgggcgcg ttgggcaaat cggaaatgga acggtatcaa
     3361 aattgggcat accgccgcca gctggcggat gctgccgatg ccgccgcttt gaaaacctgc
     3421 ctgaagcgga ttcccgacag cctcaaaaac ggggaattga gcgtatcggt tgcggaaaag
     3481 tacgaacgtt tgggactgta tgccgatgcg gtcaaatggg tcaaacagca ttatccgcac
     3541 aaccgccgcc ccgagctttt ggaagccttt gtcgaaagcg tgcgcttttt gggcgaacgc
     3601 gaacagcaga aagccatcga ttttgccgat gcttggctga aagaacagcc cgataacgcg
     3661 cttctgctga tgtatctcgg tcggctcgcc tacggccgca aactttgggg caaggcaaaa
     3721 ggctaccttg aagcgagcat tgcattaaag ccgagtattt ccgcgcgttt ggttctggca
     3781 aaggtttttg acgaaaccgg agaaccgcag aaggcggagg cgcagcgcaa cttggttttg
     3841 gcaagcgttg ccgaggaaaa ccgaccttcc gccgaaaccc attgaaacct tcagacggca
     3901 tcgttgaaat gccgtctgaa aaccatttca cttgacaaac agactgacag aaaacccgta
     3961 tgactctttt aaaaaacgat accttcctcc gcgccctgct caaacagccc gtcgaataca
     4021 cgccgatttg gatgatgcgc caggcggggc gttatctgcc cgaatacaaa gccacacgcg
     4081 cgaaagcggg cagcttcctc gatttgtgca aaaacaccga attggcgacc gaagttacca
     4141 tccaaccttt ggaacgcttc gatttggacg cggcgatttt gttttccgac atcctgaccg
     4201 tccccgacgc aatgggcttg ggactgtatt ttgccgaagg cgaaggcccg aaattcaaac
     4261 gcgccatgca acacgaggcc gacatcgcca agctgcacgt tcccgatatg gaaaaactgc
     4321 aatacgtttt cgacgcggta acttccatcc gtaaagcatt ggacggccgc gtaccgctta
     4381 tcggcttttc cggcagcccg ttcacactcg cctgttatat ggtcgaaggc ggcggcagca
     4441 aagaattccg caccatcaaa accatgatgt actcgcgccc cgatttgctg cacaaaatcc
     4501 tcgataccaa cgcccaagcc gttaccgcct acctcaacgc ccaaatcgac gcgggcgcgc
     4561 aggcggtgca aattttcgac acttggggcg gcgtgttgag cgacgcggcg tttaaagaat
     4621 tcagcctcaa atacatccgc cagatcgtcg ccggactcaa acgcgaaagc gaaggccgcc
     4681 gcgtgcctgt tatcgtattt gccaaaggcg gcgggctgtg gctggaaagt atggcccaaa
     4741 tcggcgcaga cgcattgggc ttggactgga cgtgcaacat cggcgaagca cgccgccgcg
     4801 tcggaaacca agtcgccctg caaggtaact tcgacccgtc cgccctcttc ggtacgccgg
     4861 aatccatccg cgccgaagtc gcacgcatcc tagccgacta cggacacggc agcggccatg
     4921 tcttcaacct cggacacggc atcaaccaac atgccgaccc cgaacacgcc aaaatcttag
     4981 tcgacaccgt acacgagctg tcgcggcagt atcacggcgg gtaagccggc aggaaaccgc
     5041 ccgatatgcc gtctgaagcc gagggatgga aaagtaaggc aatgcggcaa tatccgccgt
     5101 gtatggatag tacatgacgg cggcggtgtt gccgcattgg cgcaatccca accgtcccta
     5161 ttttcagacg gcatttttgt tttcagatgc agggaaaacc gatggcaaaa acgcttaaaa
     5221 ccctttacca atgcaccgaa tgcggcggca cttccccgaa atggcagggc aaatgcccgc
     5281 attgcggcga gtggaacaca cttcaggaaa gcttggccgc gcccgagccg aaaaacgccc
     5341 gcttccaatc ttgggcggcg gatacctcga ccgtccaatc cctctcctct gttaccgcga
     5401 ccgaagtgcc gcgcaatccg accggtatgg gcgaactcga ccgcgtattg ggcggcggtt
     5461 tggtcgatgg tgcggtcatc ctgctcggcg gcgatcccgg catcggcaaa tccacgctgc
     5521 tgttgcaaac cattgccaaa atggcgcaaa gccgcaaagt gctgtacgtt tccggcgagg
     5581 aatctgccca acaggtcgcc ctgcgcgcgc aacgtttgga actgcccaca gaaggtgtga
     5641 acctgcttgc cgaaatccgc atggaggcga ttcagacggc cttgaaacag catcagcccg
     5701 aggtcgtcgt catcgactcc atccaaacca tgtattccga ccaaatcact tccgccccag
     5761 gctccgtgtc gcaggtgcgc gagtgtgccg cccaactgac gcgcatggcg aaacagatgg
     5821 gcatcgccat gatactggtc ggacacgtga ccaaagacgg cgcgattgcc ggcccgcgcg
     5881 tgctggaaca catggttgat accgtgctgt atttcgaggg cgaccaacat tccaactacc
     5941 gcatgatacg cgccatcaaa aaccgcttcg gcgcggcaaa cgaactgggc gtgttcgcga
     6001 tgacggaaaa cggtttgaaa ggtgtgtcca acccgtccgc catcttcctc gccagctacc
     6061 gcgacgatac gcccggctcg tgcgttttgg ttacacagga aggcagccgc ccgcttttgg
     6121 tcgaaattca ggcattggtc gatgacgcgc acggcttcac gcccaaacgc ctcaccgtcg
     6181 gactggaaca aaaccgtctt gcgatgctgc ttgccgtgtt aaaccgccac ggcggcatcg
     6241 cctgtttcga tcaggatgtg ttcctcaacg ccgtcggcgg cgtgaaaatc ggcgaaccgg
     6301 cggcggattt ggcggtcatc ctcgcgatgc tttccagctt ccgcaaccgc cctatgcctg
     6361 aaaaaaccgt ggttttcggc gaaatcggct taagcggcga agtccgcccc gtcgcacgcg
     6421 ggcaagagcg gctcaaagaa gcggaaaaac tcggcttcaa acgcgccatc gttcccaaag
     6481 ccaatatgcc gcgcaacgcc aaagagtttc cgaacctgaa aatctacggc gtttcgagtt
     6541 tgcaggaagc catcgatatt tgccgtgaca gcagggaata aacggaaatg ccgtctgaaa
     6601 tcaggtttca gacggcattt ggtttgtggc ggattgaaac aagaaggcat accggcgaca
     6661 gataagattt gcggcaaagt tgcctgtgat atggcaaaac gcacacgccc gtcatccccg
     6721 caagggcggg aatccggaat cgtccgtttc ggcaatgatt gaaaatcacg gtaacccaac
     6781 cgcttggatt cccgacttcg tgggaatgag gggcgtgtgt gtttgatttc catccgccat
     6841 atgtcggcga cgggcttatt cgcctacggt tttttgtatc agtttttcgg cgtttgccaa
     6901 agtgtttgcc acttcgtcaa aaccgatgcg gctgccggcg atgagggcgc gcgtatcggt
     6961 ataggcggcg cgtactttgc cgtctgtttc ggtaacgagg acgcgcaggg gcagttgcag
     7021 ggcgaaggcg gggtctttga ccatcagcgg cgtgccggct ttgggcgtgc cgaagacgat
     7081 gacttttgcc ggctgcatcg ttaaaccgtt tcggtgggcg gcttcctgat ggtcgatgac
     7141 ggcaaaaatg tccatccctt tgctttttat ggcggtttca aggcggctga cggtttcgtc
     7201 aaaactgtat tttgaggtga gggtatgcgt ggtcatagcg gtttcgtttt gggtttgcgg
     7261 ttcgctggca ggatgtgccg aagcggttga aatgcagagt gcggatgcgg caatcagggg
     7321 gagtatgtgt ttcatcgtat ttcctttttc cttttcggtt tgtttatcag gcttcggacg
     7381 gggcggcacg cgccgcgccc gatgttgcgc cgcgtgctgg ggtgtcgtat gccgtctgaa
     7441 agcctgtcct ttcagacggc attgcgtcat ttcatccctt ttttgagcag gtcttcataa
     7501 ccgccgtgat tggcaacatt tgtataacct gcttttttca gctcctgaag ggcggctttg
     7561 gcacgccgtc cgctgcggca gtagaggttg accggcgtgt ctttgtcggg cgcggcttcg
     7621 tgtatgcggc ggacgatttg gtcgacgggg atgttgaccg cgttgtgcaa atgaccttcg
     7681 ctaaattcct gttcggaacg gacatcgatc caaacggccg gatgttgcgc ggtttgggcg
     7741 gcggctaggg gtttttgcgg ggctgcctgc gcggcaaagg cggctgaggc aatgagtgcg
     7801 gcggtaatca ggtgtttgat attcataggg ttctcctgcg gttgtcgtct taagggacgg
     7861 gaagttattt tatctgttcc aaagcggcgg catctatgtc ccaacgccaa acgccgccgc
     7921 ctttgccatc caatccgcgc aaaaacaggt agcggacgga aacggcggcg ggcggttgtc
     7981 cgcgcagttt gaagtagcgt gcggcggcaa cggcgtaaat cagcgcctga aggtaatagt
     8041 ggtggtgcgc gacggcttcg tccatcgcct gttgcgtgta ggcggatgcg tccgcgccga
     8101 gatggtttga tttgtagtcg atgacgcaga tattgccgtc ggggtcttgg cagaccatat
     8161 cgataaagcc gtttaaaaag ccgttgacgg tgtggaagtc gagcgtttcg gcggcggcac
     8221 ggcagacttc gggcaatcgg atatcgtcgc gggcaaacca gtcgcgcagc cgtttgaggc
     8281 cgaagtcttc ggtgtggagg gtaaagccca tttcgggaca gcggcactcg ggcgggatgt
     8341 cggacaggca gtatgccccc gtcagcggcg ttttgcggca ggcttccgcc atttcggcaa
     8401 cggcaggcag ccatatttct tcaaatccgt attttttcag cttgtcggca atgagagttt
     8461 cctgtccggc ggctgcttgt ccgaatttga aatcttcaag aatttcgtgc aggcacagcc
     8521 ccgcctgcgt gcctttcgga aaatcgtgta tcgatatgcc gtctgaagcc gtcggcgttt
     8581 cagacggcat cgccggcacc gaggtttcgg cggcatccaa ggacgggcag gcatcttctt
     8641 cgccgccgtc gggcgtttgg gtatggcggc ttaaggcggt aaagctggtg tggcggacaa
     8701 atcggaatct gcgttcggga atgctgtttg cggcaaattc ggcggtttga ccggcgttgc
     8761 cgcgataggc ggcagggggc ggcgcatctt ctgtgaaggc gaaatccgtg ccggccgggg
     8821 cattgtccgt caaacgccgc cagttgcgtt tgagcatcgc gatgccgtct ttttcccagt
     8881 cataggtttg gcggacggtt tcgcggctgt cttgcggcaa gccttcaatc aggtaggcga
     8941 gggggttgtc ggcggtatcg gaagaatagg cggcgtagat gttgagctgt tcctcggcac
     9001 gcgtcagcgc gacataaagc aggcgcaggc gttccgccat ttcctcatcg gcgtattgct
     9061 tctgttcgtc ttccgacagt tgcgcctttg ccaacagttc ggttcgattt gcgctttggt
     9121 ggaggatttg ccagtcggac ggcccggtat cttgcgcgtc ccacgcaaac gggcagtaca
     9181 ccagcggata ctgcaaacct ttcgaggcgt gcatggtaac gattttgacc aaatcttcgt
     9241 cgctttccag acggatggcg cggttgtcgc cgctgttgtt gccggccagg ctgatttggt
     9301 cgcgcaacca tttgtgcagc gcggcggggt tgcggttttg cgcgtcttcg gcggcaagca
     9361 gttcgagcag ttggaaataa ttggtcaggc tgcgcccgtt gttccggctt aagaggcgcg
     9421 tttcgatgcc gtgtgtttgg gaaaattgct gcatggcggc gaaaatgccg tattgattcc
     9481 agttgtcgag cgcggttcgg gcagattccg cccaatgcaa aatctcgctt tcgttttggt
     9541 tgaagtcgtg caattgctgc gcgtcataac cgaatatgcc gcttgtcagg acaaagcgca
     9601 gcgttccggc gcggcgcggt tcgagccaga agccgatgag tgcggaaagg gcggcggctt
     9661 cgggcgaggc gaacacggat tcgcgcgaaa gcaggacgct ttgcacctgc cgttttttca
     9721 gggcagcgga aaccatcacc gcctcgttgt gcgtgcgtac cagcacggca atatcgcccg
     9781 actgcaacgg gcagcctttg aaattcagac ggcattcggc ggcttcgttg agcgcgtggg
     9841 cgatttcgtc ggcgcaatag tcggcggcac ggcggcgcaa aacgtctttg ttggcttttt
     9901 cattgtcgtt ttcgtgcagc caacgaacct gtacggcagg acgttcgggg gacaacctgc
     9961 tttcggcacg cgccgcaccg acttccgaat agccgatgtt ttccaaaacg aacgggcgtt
    10021 ctttgaggcg gaacagcgcg cctatgctgc cgataagcgc ggcgtggctg cggtagttgg
    10081 tggcgagcgt gtagcggtgc cgcgcgtctt ccgccgcctg aaggtaggcg taaatgtccg
    10141 ctccgcgaaa gctgtaaatc gcctgtttgg gatcgccgac gaggaacagc ggtcggtttt
    10201 gggcgatgaa gattttttgg aagatttcgt attgcagcgg gtcggtgtct tggaactcgt
    10261 cgatcagcgc ggtttcccag ttttcggcaa cggcgcgggc gagggtttcg gcgtgcggat
    10321 tgtcggtcag cgcggtgtgg acatcgagca gcaggtcgtc gaaaccgcgt tcgcggcgcg
    10381 attttttcat ctcggcaagg ctgcggttga ggtatccgat taaatccagt tgcagccgga
    10441 ttattgttgc ttcttccgct tcttcgagtg cgtccaaatc acgcctgaag tctgccagtt
    10501 tctgcaattc ggcaaatact gccgcatcgg gcgttttgcc ttttttcagt ccggcttcga
    10561 gtttgtcgga cgcaagtttc aagagccgtt cgtgcagctt tgcctccaaa aagggcaaat
    10621 ccggcgacag ggctttttgt tccaatgcgt caaacagttc ggcaaaactg tttttccgat
    10681 atgaattgcc gtttaaaagg ggatggatgc gccaaaaagt ttcttttaat tcagccagat
    10741 ttccgcaaat gttttgccag cttgccaaag cggcatcccg ggcttgcggc aaatcggttt
    10801 gcggacggcg gaaattcagg tacgggcggg acaggtaggc gcggatttgg gcaaggacgg
    10861 tttgcggcac agctttgcgt ttaaacgcca atgcggcaag caccggatca ttgctgacgc
    10921 gttcccgcca aaaatcttgc gccgggacaa gcaggcggtc gccgtcttct tcggtcagtt
    10981 cgacatcgaa cggtgcttgg cacaaaaacg cgtagtcgcg caggatgcgc tggcagaagc
    11041 cgtggatggt atagatggcg gcgttgtcga attgcccgat ggcggctttg aggcggacaa
    11101 tcagacgcgt ccggccctct ttttgcaaag cctgttttaa gagtgcgggc aggaaggtgt
    11161 cgcctttgtg gtgttcggcg cagtaggcgg cgatgccgtc tgaaagcgtg tcgtctccaa
    11221 gtttggcaat ttctttactt tctaaaacct gcaacacatc gtccaaacgt gcgcgcaggc
    11281 gtgttttcaa ctcggcggtg gcggctttgg tgaaggtaac gaccaatacg cgctcgacgt
    11341 ttttttgttc caatacgatc aggcgcgtaa acagggcggc aatgccgtag gtttttccgg
    11401 tgccggcaga ggcctcaatc aggttggtgc cggcaatggg gacggtcagc gggtcaaatg
    11461 cttggatggg tgcagacata gtgcgcgctc ggaaaacggt tggacggtat agtggattaa
    11521 caaaaatcag gat
//
LOCUS       DAXIFS010000049        11443 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.049, whole genome shotgun sequence.
ACCESSION   DAXIFS010000049 DAXIFS010000000
VERSION     DAXIFS010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11443
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.049"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..543)
                     /locus_tag="ACFOCA_000927"
     CDS             complement(<1..543)
                     /locus_tag="ACFOCA_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987666.1"
                     /translation="MAVIIFVNGIRAVNGLVKSSINTANAFAEEGLDVHLINFVGNIT
                     GAEHLSPPFHLHPNVKTSSIIDLFNDIPENVSCRNIPFYSIHQQFFKAEYSAHYKHVL
                     MKIESLLSEEDSIIFTHPLQLEMYRLANNIKSKAKLIVQIHGNYMEEIHNYEILARNI
                     DYVDYLQTVSDEMLEEMHSHF"
     gene            complement(695..1744)
                     /gene="siaC"
                     /locus_tag="ACFOCA_000928"
     CDS             complement(695..1744)
                     /gene="siaC"
                     /locus_tag="ACFOCA_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysialic acid capsule biosynthesis protein
                     SiaC"
                     /protein_id="HFC6987667.1"
                     /translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
                     YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
                     KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
                     ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD
                     NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
                     TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYETLFGKVAA
                     CNIRKGAQIKKTDIS"
     gene            complement(1745..2431)
                     /gene="neuA"
                     /locus_tag="ACFOCA_000929"
     CDS             complement(1745..2431)
                     /gene="neuA"
                     /locus_tag="ACFOCA_000929"
                     /EC_number="2.7.7.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acylneuraminate cytidylyltransferase"
                     /protein_id="HFC6987668.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
                     FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
                     LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
                     LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
                     AENILNHKES"
     gene            complement(2435..3568)
                     /gene="neuC"
                     /locus_tag="ACFOCA_000930"
     CDS             complement(2435..3568)
                     /gene="neuC"
                     /locus_tag="ACFOCA_000930"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HFC6987669.1"
                     /translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
                     YGRTYKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
                     EALAGATVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
                     EKRKHIHIIGSPDLDVMVSSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
                     AQYFKALELSGQNIISIYPNNDTGTESILQELLKCQSEKFIAFPSIRFEYFLVLLKHA
                     KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHMGKSIIHTDYETKNIFDAIQQACSLG
                     KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
     gene            3703..4878
                     /gene="ctrA"
                     /locus_tag="ACFOCA_000931"
     CDS             3703..4878
                     /gene="ctrA"
                     /locus_tag="ACFOCA_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export outer membrane
                     protein CtrA"
                     /protein_id="HFC6987670.1"
                     /translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
                     VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
                     LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
                     MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
                     QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
                     GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
                     RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
     gene            4893..6056
                     /gene="ctrB"
                     /locus_tag="ACFOCA_000932"
     CDS             4893..6056
                     /gene="ctrB"
                     /locus_tag="ACFOCA_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export protein CtrB"
                     /protein_id="HFC6987671.1"
                     /translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
                     LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
                     SSLDELRKILPVREFYETKGDAFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
                     LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
                     LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
                     QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
                     RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
     gene            6056..6853
                     /locus_tag="ACFOCA_000933"
     CDS             6056..6853
                     /locus_tag="ACFOCA_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6987672.1"
                     /translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
                     EPLLMTFVIVLMWKFLRADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
                     YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
                     AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
                     TEMFRAGYFGSDVITYENPWYIVLCNLVLLLFGLAMVSKFSKGVEPQ"
     gene            6850..7500
                     /locus_tag="ACFOCA_000934"
     CDS             6850..7500
                     /locus_tag="ACFOCA_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6987673.1"
                     /translation="MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGK
                     STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
                     KNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
                     CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMHQFEDMDKAYEYYNSLP"
     gene            7565..9838
                     /locus_tag="ACFOCA_000935"
     CDS             7565..9838
                     /locus_tag="ACFOCA_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HFC6987674.1"
                     /translation="MNITQILSQELSATTAQINAAIELLDDGATVPFIARYRKEATGG
                     LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDGLRAQIEAADNKTALEDLYL
                     PYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAI
                     LMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETESEKFSDYFDHREPIRAMPSHRA
                     LAVLRGRNEGVLNIALKYQPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRA
                     KIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCA
                     VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
                     EMSKMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
                     PKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
                     IVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGKEPLDASAVHPEAYPVVA
                     KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQT
                     ASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
                     VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
                     RAPANSAMADAFAKLKR"
     gene            9869..10867
                     /locus_tag="ACFOCA_000936"
     CDS             9869..10867
                     /locus_tag="ACFOCA_000936"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6987675.1"
                     /translation="MHTPLTYIDLFSGAGGLSLGFEQAGFQQLLSVEMESDYCQTYRT
                     NFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNH
                     LFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADF
                     GVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAM
                     NHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKPAVCITGDMRKVFHY
                     EQNRALTVRELAALQSFPDNFIFCGSKIAQQQVGNAVPPLLAKAIAESILKMSENE"
     gene            10860..11443
                     /locus_tag="ACFOCA_000937"
                     /pseudo
     CDS             10860..11443
                     /locus_tag="ACFOCA_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694379.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
BASE COUNT         3086 a         2377 c         2760 g         3220 t
ORIGIN      
        1 gaaatgggaa tgcatttctt ccagcatttc atcagatacc gtttgaagat aatcaacata
       61 atcgatattt cgtgccaaaa tttcatagtt atggatttct tccatatagt taccatgaat
      121 ttgtacaatt agcttggctt ttgacttaat attattcgct aaacgataca tttccagttg
      181 aagaggatga gtgaagataa tgctatcttc ttcagataat aaagattcaa ttttcatcaa
      241 aacatgctta tagtgggcac tgtattcggc tttgaagaat tgttgatgga tagaataaaa
      301 aggaatattt cggcagctaa cattttctgg aatgtcatta aataaatcta tgatgctgga
      361 ggttttgaca ttgggatgta agtggaatgg gggggataaa tgctctgctc cagtaatatt
      421 gccaacaaaa ttaattaaat gaacatccag tccttcttca gcaaaagcgt ttgcagtatt
      481 gatagatgat ttaacaaggc catttacagc ccgaattccg ttaacaaata taataacagc
      541 catattataa agtcctaaag tatataattc gattatgagt aaaaagtaat agttgaaata
      601 aggttctgat ttcaatcaga accttaaaaa ttagaaattt ttaatataga taagcaatat
      661 tctgaattta agaatagctt aatctatttt attattaact aatatcagtt tttttgattt
      721 gagcaccttt gcgaatattg caagcagcga ccttaccaaa taatgtttca tattcgttga
      781 cgctgaagtc tccattgcct gggcgtttaa cccataggtt atctccggac aacagttctc
      841 cttttttaat gtctttatct gctacgacag atgcaaaggc gaaatcttta gttggctttt
      901 ctcccgcgat aatcgtgtct tttttgccgc cgcgtgccaa ttttaaagca tgagcgcctt
      961 gcttgagctc tttaaaagta tccggattca tagagcatac aatatccgga cctgggcgat
     1021 ccatgcggtc agtaaagtga cgctctaaaa tcgaaccgcc taaagctact gctcctaagc
     1081 aagcatagtt atctaaggta tggtcagaca ggccaatgat tgcgtctgga aaggcttcag
     1141 ataaatcgtt cataccaccc aatcgaacat cttcgtaagg ggttgggtag atgttggtac
     1201 agtgaagcaa agcataaggt acccctgctt ctcgaataat ttctaccgac tttttgatgc
     1261 tttcaataga attcatgccg gtagagagaa taataggctt accaaaagag gccaccagtt
     1321 taattaatgg gtagttatta cattcgccag agccgatttt atatgctgga atatccatac
     1381 gttgtaatcg taaagcagct gcacgagaga aaggagtact gataaaaatc atacccttac
     1441 tctctacgta ttcttttaat ttaatctcat cttcttcatt cagggcgcaa cgttccataa
     1501 tttcataaat agagacatct gcattgcctg gaatgacttg tttggcctca tcagacattt
     1561 cgtcttcaac gatgtgtgtt tgatgtttaa caacttcagc gcctgcatta taggcagcat
     1621 caaccatttc aaaagctgtt tttaaagagc cttcatgatt gatgccgatt tcacagataa
     1681 tcaatggttc gtggttgtaa cctactgaac gattaccaat tttaaattcg ttgttgtttt
     1741 gcatttagct ttccttgtga ttaagaatgt tttctgcctg ttgtaaatca agctcagtat
     1801 caatatcgat agagtcttga tgagacataa tataaagttt ggttggggcg ataaaaaaac
     1861 aattatttgc aattagtgaa gcagtatcat taatgtaaat tgcaccatta ggcctaaatg
     1921 cctgaggtaa ttgttggcga ggctgctcca aatcgcttag atggcgcatg ggggcatatt
     1981 cgccattatt gatttgaagc agggttttta gtggatgatg ctccattggg catgcagaga
     2041 caacggatcc ttttattttc tcatcaaata gagaaaaagc ttcacgaata tgagcccctg
     2101 tgcgtaatgg actggttggt tgtaataggg ttactgtgcc ggaattactg ccaattgttt
     2161 ctaaagcatg tattacacct gaaatagagc tggctgtatc ggaggccagc tctgcagggc
     2221 gtaggacgac ttcgacaccg aaatttttag cttcttctgc aattaacccg ccatcagtcg
     2281 aaacaattat gcggtcaaaa cactttgatg atatagcagc attaattgta tgaccaagta
     2341 atgatatgcc attcattttc cggagatttt ttaatggcaa tcctttggag ttttggcgcg
     2401 caagtataac cgcaatattt tgtttttcca taatttaaag attcaaatcg ataaaacgtt
     2461 tttgagcaga aacattccac gtttcaggat tgttgattac ttcagcaaat ctttctgtgc
     2521 tggtgcgagt atctccgcca ttaaaggtat catctgcttc aaatttgcct aaactgcatg
     2581 cttgttgaat cgcatcaaag atatttttag tttcataatc tgtatgaata atagattttc
     2641 ccatatggcg gttactttgg cgggtaccaa catcaattga agggacaccg tagagaggag
     2701 cttctctaat acctgcactt gagttgccga ccataaattt ggcatgtttc aataaaacta
     2761 aaaagtattc aaatcgtata gatggaaatg cgataaattt ttcagattga cattttaata
     2821 actcttgcag aatactttca gtgccagtgt cattattagg gtagatgcta atgatatttt
     2881 ggccacttaa ttctaatgct ttgaaatatt gggccgcata ttgtggcatt aaatgtgctt
     2941 ctgtagtcac ggggtgaaac atagaaatac cataattttc gtatggtaaa ccgtaatatt
     3001 ctttgacttc ttctaaggat gggagggtgg aagagaccat aacatctaaa tcgggggagc
     3061 cgatgatgtg aatatgcttt cttttttctc ccatttgcac taggcgagtg acagcttgtt
     3121 catttgctac caagtggata tgagaaagtt tactaataga atgacgaatg gagtcatcta
     3181 ctgtaccaga tagttcacca ccttcgatat ggcaaactaa acggctgctt aatgcaccta
     3241 cagttgcgcc tgctagtgct tctaaacggt cgccgtgaat catgaccata tcaggttcaa
     3301 tttcatcaga tagacgagag ataaacgtaa tggtattgcc taaaacggca cccattggtt
     3361 caccttggat ttgatttgaa aacagatatg tatgttgata gttttctcga gttacttcct
     3421 tgtaggttct gccatatgtt ttcatcatat gcataccagt tacaatcaaa tgcaattcaa
     3481 ggtctgggtg attttcaata taggctaata aaggttttag cttgccgaag tcggctctag
     3541 tacctgtaat gcaaagaatt cttttcatga ttttagaatc tataagtata taagtataag
     3601 gaagttggaa agaagaatac taattatact ctacgtactc ataaatttat ttcgattaag
     3661 tgctataatt aggccattta taattatatt aggatttggc ttgtgtttaa agtgaaattt
     3721 tatattcgtc acgcagtatt attattgtgt ggaagtttaa ttgtaggatg ctctgcgatt
     3781 ccttcatcag gccccagcgc aaaaaaaatt gtctctttag ggcaacaatc tgaagttcaa
     3841 attcctgaag tggagctgat tgatgtgaat catacggttg ctcagttatt atataaggct
     3901 cagataaatc agtcattcac tcagtttggc gatggttatg cttcggctgg tacgctaaat
     3961 attggtgatg tattggatat tatgatttgg gaagcgccgc cggcagtatt gtttggtggt
     4021 ggcctttctt cgatgggctc gggtagtgcg catcaaacta agttgccaga gcagttggtc
     4081 acggcacgtg gtacggtttc tgtgccgttt gttggcgata tttcggtggt cggtaaaacg
     4141 cctggtcagg ttcaggaaat tattaaaggc cgcctgaaaa aaatggccaa tcagccacaa
     4201 gtgatggtgc gtttggtgca gaataatgcg gcgaatgtgt cggtgattcg tgctgggaat
     4261 agtgtgcgta tgccgctgac ggcagccggt gagcgtgtgt tggatgcggt ggctgcggta
     4321 ggtggttcaa cggcaaatgt gcaggatacg aatgtgcagc tgacacgtgg caatgtagta
     4381 cgaactgttg ccttggaaga tttagttgca aatccgcgac aaaatatttt gctgcgtcgc
     4441 ggtgatgtgg ttaccatgat taccaatccc tataccttta cgtctatggg tgcggtgggg
     4501 agaacacaag aaatcggttt ttcagccaga ggcttatcgc tttctgaagc cattggccgt
     4561 atgggcggtt tgcaagatcg ccgttctgat gcgcgtggtg tgtttgtgtt ccgctatacg
     4621 ccattggtgg aattgccggc agaacgtcag gataaatgga ttgctcaagg ttatggcagt
     4681 gaggcagaga ttccaacggt atatcgtgtg aatatggctg atgcgcattc gctattttct
     4741 atgcagcgct ttcctgtgaa gaataaagat gtattgtatg tgtcgaatgc gccgttggct
     4801 gaagtgcaga aatttttgtc gtttgtgttc tcgccggtta ccagtggcgc gaacagtatt
     4861 aataatttaa ctaattaatg tgagtaagta agatgtctga gcaacttcct gtggcagttg
     4921 ccactgaaac caaagccgag cgtaaaaagc cgaaaaagaa aagttggatt aaaaagctaa
     4981 gccctttatt ttgggtaacg gtgattatcc ctacggtaat ttcgttggtg tatttcggct
     5041 tcttcgcttc cgatcgtttt acgtcgcaat cgagctttgt ggtgcgctcg cctaaaagcc
     5101 aatcttctct caatggcctg ggtgccattt tgcagggcac aggttttgcc cgtgcgcaag
     5161 atgatattta cacggttggg gagtatatgc gttcgcgctc gtctttggat gaactgcgta
     5221 aaatcttgcc ggtgcgtgag ttttatgaaa ccaaaggtga tgcgttcagc cgctttaatg
     5281 ggtttgggtt ccgtggcgag gaagaggctt tttatcaata ctataaaaat caggtgatga
     5341 tcaattttga tacggtttcg ggtatttcca cgttgaatgt aacttccttt gatgcgctgg
     5401 aatctaagaa aatcaatgag gctttgttaa aacaaggtga agcattgatt aaccagttga
     5461 acgatcgtgc acgtgctgat acggtgcgct atgcggaaga agtagtgaaa acggcggcag
     5521 agcgggtaaa ggaagcctct cagaatctga cggattaccg gattgccaat ggcgtttttg
     5581 atttgaaagc gcaatcggaa gtgcaaatgg ggttggtttc caagctgcaa gatgaattga
     5641 ttgtgattca aacccagctg gatcaggtga aagcagtcac tccggagaat ccgcagattc
     5701 cgggtttgca ggcgcgtgag cagagcttgc gtaaagaaat tgaccaacag ttacgtgcca
     5761 tttcgggcgg tgggcattct tcgttgtcta atcaggctgc cgaatatcag cgtgtgtatt
     5821 tggaaaacca gttggcagag cagcagttgg cagccgccat gacttctttg gaaagtgcca
     5881 aggttgaagc agaccgtcag cagctttatt tggaagtgat ctcgcaaccg agcctgccgg
     5941 atttggcaca tgagcctaaa cggttataca acattgttgc cactctgatt atcggcttga
     6001 tggtttatgg tattttgagc ctgttgactg ccagcattcg tgagcataaa aactgatgaa
     6061 agccttgcat aaaacatcat tttgggaatc tttagccatt caaaggcgcg taatcggtgc
     6121 gctgttgatg cgggaaatta tcacccgtta cggtcgcaat aatattggct ttttatggct
     6181 gtttgttgag ccgttgctga tgacattcgt tatcgtcttg atgtggaaat ttttaagggc
     6241 agaccgatat tcaactttga atattgtcgc atttgcgatt actggctatc cgatgttgat
     6301 gatgtggcgt aatgcctcaa aacgggcagt tgggtcgatt tcttcaaatg ccagcttgct
     6361 ttatcaccgc aatgtaagag ttttggatac catcttggcg cgcatgattt tggaaattgc
     6421 tggtgcaacc attgcgcaga ttgtgattat ggcggtattg attgcgattg gctggattga
     6481 aatgccggca gatatgtttt atatgctgat ggcttggctt ttgatggctt tttttgcgat
     6541 tggtttgggt ttggtgattt gttcgattgc ctttaatttc gagccgtttg gcaagatttg
     6601 gggcacattg acttttgtga tgatgccgtt atccggtgcg ttcttttttg tgcataattt
     6661 gccgcccaag gtacaagaat atgcattaat gattccgatg gtgcatggca cagaaatgtt
     6721 ccgtgccgga tattttggca gcgatgtaat tacctatgaa aatccttggt atatcgtatt
     6781 gtgcaatctg gtgttgttgt tgtttggctt ggcgatggtc agtaaattca gtaaaggagt
     6841 cgagccgcaa tgatttcagt tgaacacgtt tccaaacgct atctgacccg ccaaggttgg
     6901 cggacagtct tgcacgatat tagcttcaaa atggagaagg gcgagaaaat cggtattctc
     6961 ggccgcaacg gtgcaggtaa atcgacgctc atccgtttga tcagtggtgt cgagccgccg
     7021 accacgggtg aaatcaagcg gacaatgagt atttcttggc ctttggcatt ctccggtgcg
     7081 tttcaaggta gtctgaccgg tatggacaat ttgcgtttca tctgccggat ttacaatgtc
     7141 gatatcgatt atgtgaagaa ctttaccgaa gagttttccg agttggggca atatctttac
     7201 gagccggtca agcgttattc ttcaggtatg aaggcgcgtt tggcatttgc tttgtcgttg
     7261 gcggtagagt ttgattgcta tttgattgac gaagtgattg cagttggtga ctcgcgcttt
     7321 gccgataaat gtaagtacga gttgtttgaa aagcgcaaag accgttccat catcttggtg
     7381 tcgcacagcc acagcgccat gaagcaatat tgcgataatg cgatggtgct ggaaaaaggg
     7441 catatgcacc agtttgaaga tatggacaaa gcctacgaat attataattc gctgccttaa
     7501 agcgattgtt ttttaaatca ggccgtctga aatttcagac ggcctgtccg ttggaattct
     7561 attgatgaac attactcaaa ttctttccca agaactttcc gcgactaccg cgcaaatcaa
     7621 tgccgctatt gagcttttag acgacggcgc aaccgtgccg tttatcgcgc gttaccgtaa
     7681 agaagccacc ggcgggctgg acgacacgca gctgcgccgg cttgccgagc ggctgcaata
     7741 cctgcgcgag ttggaagagc gcaaagccgt tgtgttaaaa agcattgaag agcaaggcaa
     7801 actttcagac ggcctccgcg cgcaaatcga agccgccgac aacaaaaccg cgctggaaga
     7861 cctgtatctg ccctacaagc ccaaacgccg caccaaggcg caaattgcgc gcgaacacgg
     7921 tttgcagccg ctggcggacg tgttgcttgc cgagcagtcg caggacgtgg aagccgccgc
     7981 acaaggctac ctgaacgaaa acgtccccga tgccaaagcc gcgttggacg gcgcgcgtgc
     8041 gattctgatg gagcagtttg ccgaagacgc ggaactcatc ggcacgctgc gcgacaagct
     8101 gtggaacgaa gccgaaatcc acgcgcaagt tgttggaggc aaagaaaccg aaagcgaaaa
     8161 attcagcgat tattttgacc accgcgaacc tattcgtgcg atgcccagcc atcgtgcgct
     8221 agcggttttg cgcggacgca acgaaggcgt gttgaacatc gcgctcaaat atcagcccga
     8281 cgacacgccg attacgcagc aaagcgaata cgagcaaatc atcgcccgcc gcttcaaagt
     8341 ttcagacggc cacaaatggc tgcgcgacac cgtgcgcctg acttggcgcg cgaaaatctt
     8401 tttgtcgttg gaacttgaag ctctcaatcg tttgaaagaa gccgccgaca ccgacgcgat
     8461 taccgtgttc gcccgcaatc tcaaagactt gctgcttgct gcgcccgccg gacggctgac
     8521 cacgctgggt ctcgaccccg gctaccgcaa cggcgtgaaa tgcgccgtgg tggacgacac
     8581 cggcaagctg ctggataccg tcatcgtcta tttgcatcaa gaaaacaata tgttggcaac
     8641 gctgtcgcgc ctgattaaac agcacggcgt gaagctcatc gccatcggta acggcaccgc
     8701 cagccgtgaa accgacaaaa tcgcgggcga actggtgcgt gaaatgtcga aaatggggct
     8761 gcataaaatc gtcgtgtccg aagccggcgc gtcgatttat tccgcgtccg aactggcggc
     8821 gcgcgagttc cccgacttgg acgtttccct gcgcggcgcg gtgtccatcg cccgcaggct
     8881 acaagacccg cttgccgagt tggtcaaaat cgaccccaaa tccatcggcg tggggcagta
     8941 tcagcacgac gtgaaccaaa gccagctcgc caaatcgctg gacgcggtgg tcgaagactg
     9001 cgtgaacgcc gtcggcgtgg acgtgaacac cgcctccgcc ccgctcttgg cgcgaatttc
     9061 cggtttgaat caaacccttg cccaaaacat cgttgcctac cgcgatgaaa acggcgcgtt
     9121 cgacagccgc aaaaaattgc tgaaagtacc gcgtttgggc gaaaaaacct tcgagcaggc
     9181 ggcaggcttt ttgcggatta acggcggtaa agagccgttg gacgcgagcg ccgtccaccc
     9241 cgaagcctat cccgtcgtcg ccaaaatgct ggcgcaacaa ggcattagcg ccgccgaact
     9301 catcggcaac cgcgagcgcg tgaagcaaat caaagcgtcc gacttcaccg acgaacgctt
     9361 cggcctgccg accattttgg acatcctgtc cgaactggaa aaacccggcc gtgatccgcg
     9421 cggcgagttt cagacggcat cgtttgccga aggtatccac gaaatcagcg acttgcaagt
     9481 cggtatgata ctcgaaggcg tggtttccaa cgtcgccaac ttcggcgcgt tcgtggacat
     9541 cggcgtccat caggacggct tggtgcacat ctccgccctg tccaacaagt tcgtccaaga
     9601 cccgcgcgaa gtggtgaaag ctggcgacgt ggtgaaagtg aaagtgctgg aagtcgatgc
     9661 tgcacgcaaa cgcatcgcgc tgaccatgcg cttggatgac gaaccgggcg gcgcaaaaca
     9721 taaaatgccg tctgaaaacc gcagccgcga acggacagcc ggccgcaaac cccaacgcaa
     9781 cgaccgcgcc ccagccaatt cggcgatggc ggatgcgttt gcgaagctga agcggtaaaa
     9841 taatcgaaga gtttatggat tttgacttat gcacacacca cttacctata ttgacctttt
     9901 ctcaggagca ggaggcctat ccttgggttt tgaacaagcc ggattccaac aattgctttc
     9961 tgttgaaatg gagtctgatt attgtcagac ttaccgtacc aacttccccc atcatcaatt
    10021 actgcaaaaa gatttaacca cactaaccga acaagattta atcaattgtc ttaacggaca
    10081 agcagttgat ttgattattg gaggaccacc ttgtcaaggt tttagtatgg caggaaagat
    10141 tggacggaca tttacagatg acccacgcaa ccatttattt aaagagtttg tccgaatagt
    10201 taaaattgtc caaccatatt tttttgttat ggaaaatgta gcgcgactct atacacacaa
    10261 ttcaggtaaa acacgtattg agattattca agcatttcag aatatcggtt attcggtgga
    10321 atgtaagata ctgagtgcag ccgatttcgg tgttcctcag atacgtagcc gagtgatatt
    10381 tatcgggagg agggataaag gcaaaatttc ctttcccgaa cctttgcaga tttcccatca
    10441 gactgttgga tcagcaatag gacattttcc aaaactggct gctggcgaaa gcaatccaca
    10501 cgttgcaaat catgaagcta tgaatcattc ggcacaaatg ttagaaaaaa tggcatttgt
    10561 taaaaatgga ggtaaccgta acgatattcc tgaaccatta cgtccgaaaa caggtgatat
    10621 ccgtaaatac atccgttaca acagcaacaa accagccgtt tgtattacag gagatatgcg
    10681 caaagttttt cactatgaac agaatcgggc tttaaccgtt cgtgaattag ctgccttaca
    10741 atctttccct gataatttta ttttttgcgg cagcaaaatt gcccagcagc aggttggtaa
    10801 cgccgtaccg cctttattgg caaaagctat tgctgaaagt attttaaaaa tgagtgaaaa
    10861 tgaataagca atatccgaaa attaactata tcggtaataa agagaaaata gcttcctgga
    10921 tttgtgacca gcttccgtct gatgtagata cagttgcaga tgtatttagt ggaggctgtt
    10981 cctttgccta tgaagccaaa aaacgcggct atcgtgtgat tactaacgat attttggcaa
    11041 ttaattacca aattgcttta gcattaatag aaaacaacca tgaaacatta aatgacgatg
    11101 atggcgcaat gattttttca ggtagcccgc atgccggttt tatgagtcag cgttatgccg
    11161 aaaaattcta ttttcacgat gaataccaac aacttgattt gtaacgtaaa aatataggga
    11221 aactggataa ccagtataaa cgcgctttgg cgtttacttt aatgcgtcgc gccatgatac
    11281 gtaaaatgcc ctatacggaa gatatgcgcc cgggcgatac cgctaatcct tatggcgcat
    11341 ccaaagcgat ggtggaacgg atgttaaccg acatccaaaa ggccgatccg cgttggagcg
    11401 tgattttgtt gcgctatttc aacccgattg gggcgcacga aag
//
LOCUS       DAXIFS010000050        11398 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.050, whole genome shotgun sequence.
ACCESSION   DAXIFS010000050 DAXIFS010000000
VERSION     DAXIFS010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11398
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.050"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..70
                     /locus_tag="ACFOCA_000938"
     CDS             <1..70
                     /locus_tag="ACFOCA_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6987676.1"
                     /translation="EFRFNFGTPSQQLKILRDWCGI"
     gene            95..429
                     /locus_tag="ACFOCA_000939"
                     /pseudo
     CDS             95..429
                     /locus_tag="ACFOCA_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(450..1676)
                     /locus_tag="ACFOCA_000940"
     CDS             complement(450..1676)
                     /locus_tag="ACFOCA_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HFC6987677.1"
                     /translation="MTFLQRLQGLADNKICAFAWFVVRRFDEERVPQAAASMTFTTLL
                     ALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFREQANRLTA
                     IGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQFLVYWALLTFGPLSLGVGISFM
                     VGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPARQAFVGALATA
                     FCLETARSLFTWYMGNFDGYRSIYGAFAAVPFFLLWLNLLWTLVLGGAVLTSSLSYWR
                     GEAFRRGFDSRGRFDDVLKILLLLDAAQKEGKALPVQEFRRHINMGYDELGELLEKLA
                     RHGYIYSGRQGWVLKTGADSIELNELFKLFVYRPLPVERDHVNQAVDAVMTPCLQTLN
                     MTLAEFDAQAKKQQQS"
     gene            complement(1691..2116)
                     /locus_tag="ACFOCA_000941"
     CDS             complement(1691..2116)
                     /locus_tag="ACFOCA_000941"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987678.1"
                     /translation="MPSEHAAYADLMASSAKRLLCAKAILFSSAVRTGAAVGNIFFDG
                     FADGGDFGDGAQYGFATFNAVDAASDSAGGIAGATVLEIVEDEDFEGDLGSWADSVKM
                     VRSSDGITVVPMPSETAAVQAFVPDGKIGYNIGHQCPTY"
     gene            2221..2880
                     /gene="queC"
                     /locus_tag="ACFOCA_000942"
     CDS             2221..2880
                     /gene="queC"
                     /locus_tag="ACFOCA_000942"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFC6987679.1"
                     /translation="MSNQKALVIFSGGQDSTTCLIQAIQIYGRENVQAITFQYGQRHA
                     VELERARWIAQDLGVKQTVLDLSLMRQITHNALMDDTAAIETAENGVPNTFVDGRNAL
                     FLLYAAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPL
                     MYLTKAQTWALADEMGVLDYIREQTHTCYNGIVGGCRECPSCILRERGLAEYLESKKA
                     V"
     gene            2908..3423
                     /locus_tag="ACFOCA_000943"
     CDS             2908..3423
                     /locus_tag="ACFOCA_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HFC6987680.1"
                     /translation="MPKLHMFYLGGNAGRSNIEVHDIQFAVCDDYREAVPALKAAWFG
                     DADKIHIDGWQVVEWADGYDIAVSETPKTEMPSEHAPRLYFANVGGYRAGQLAEAHAF
                     GLFAAATPAEAKQKALQTLLTDHVQQHKDNLKDVDNLLALDRIGNFHIRLTPNPHGKP
                     AEIGFQGYLPI"
     gene            3430..3852
                     /gene="queD"
                     /locus_tag="ACFOCA_000944"
     CDS             3430..3852
                     /gene="queD"
                     /locus_tag="ACFOCA_000944"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HFC6987681.1"
                     /translation="MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDGIIKGG
                     AKDGMVMDFTDLKAIVKQHITDPFDHAFIYHGGNSRESQIAALLEGWNMKTLRLPCRT
                     TAENMAVEMYDRLKNAGLNVCRVKLWETPTSCAEYEGE"
     gene            4121..4492
                     /locus_tag="ACFOCA_000945"
     CDS             4121..4492
                     /locus_tag="ACFOCA_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HFC6987682.1"
                     /translation="MKLLSTLLVLLVTAEHFYIAWLEMTQIPSEKAAEIFKLPYEFME
                     QKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGATVLFLGFVLIAAAWGAFSSGN
                     KGILVKQGLPAFLAAAAVLAV"
     gene            4489..5127
                     /locus_tag="ACFOCA_000946"
     CDS             4489..5127
                     /locus_tag="ACFOCA_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFC6987683.1"
                     /translation="MKKINVAPENPQYRIVEIFESLQGEGWNTGIPAVFVRLGKCNLA
                     CGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFL
                     CIETNGLNPAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERK
                     IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE"
     gene            complement(5463..5539)
                     /locus_tag="ACFOCA_000947"
     tRNA            complement(5463..5539)
                     /locus_tag="ACFOCA_000947"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5503..5505),aa:Pro,seq:cgg)
     gene            complement(5767..6852)
                     /gene="nagZ"
                     /locus_tag="ACFOCA_000948"
     CDS             complement(5767..6852)
                     /gene="nagZ"
                     /locus_tag="ACFOCA_000948"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HFC6987684.1"
                     /translation="MTVPHIPRGPVMADIAAFRLTEEEKQRLLDPAVGGIILFRRNFQ
                     NIEQLKTLTAEIKALRTPELIIAVDHEGGRVQRFIEGFTRLPAMSTLGEIWDKDGASA
                     AETAAGQVGRVLATELSACGIDLSFTPVLDLDWGNCPVIGNRSFHHNPEAVAHLALAL
                     QKGLAKGGMKSCGKHFPGHGFVEGDSHLVLPEDRRSLSELEAADLAPFHIMSREGMAA
                     VMPAHVVYPQVDTKPAGFSEIWLKQILRRDIGFKGVIFSDDLTMEGACGVGGLKERAR
                     ISFEAGCDIVLVCNRPDLVDELREDFRIPDNPALAQRWQYMANTLGSAAAQAVMQTAD
                     FQEAQAFVAGLASPQDTAGGVKVGEAF"
     gene            complement(6909..8429)
                     /locus_tag="ACFOCA_000949"
     CDS             complement(6909..8429)
                     /locus_tag="ACFOCA_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFC6987685.1"
                     /translation="MQLIDYSHSFFSVVPPFLALALAIITRRVLLSLGIGILVGVAFL
                     VGGNPVDGLTHLKDMVVGLAWSDGDWSLGKPKILVFLILLGIFTSLLTYSGSNQAFAD
                     WAKRHIKNRRGAKMLTACLVFVTFIDDYFHSLAVGAIARPVTDKFKVSRAKLAYILDS
                     TAAPMCVLMPVSSWGASIIATLAGLLVTYKITEYTPMGTFVAMSLMNYYALFALIMVF
                     VVAWFSFDIGSMARFEQAALNEAHDETAVSDGSRGRVYALIIPVLALIASTVSAMIYT
                     GAQASETFSILGAFENTDVNTSLVFGGTCGVLAVVLCTLGTIKTADYPKAVWQGAKSM
                     FGAIAILILAWLISTVVGEMHTGDYLSTLVAGNIHPGFLPVILFLLASVMAFATGTSW
                     GTFGIMLPIAAAMAVKVDPSLIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHI
                     DHVTSQLPYALTVAAAAASGYLALGLTKSALLGFGTTGIVLAVLIFLLKDKKRANA"
     gene            complement(8629..10128)
                     /locus_tag="ACFOCA_000950"
     CDS             complement(8629..10128)
                     /locus_tag="ACFOCA_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HFC6987686.1"
                     /translation="MFKKYQYLALAALCAASLAGCDKAGSFFGADKKEASFVERIEHT
                     KDDGSVSMLLPDFVQLVQSEGPAVVNIQAAPAPRTQNGSSNAETDSDPLADSDPFYEF
                     FKRLVPNMPEIPQEEADDGGLNFGSGFIISKDGYILTNTHVVTGMGSIKVLLNDKREY
                     TAKLIGSDVQSDVALLKIDATEELPVVKIGNPKDLKPGEWVAAIGAPFGFDNSVTAGI
                     VSAKGRSLPNESYTPFIQTDVAINPGNSGGPLFNLKGQVVGINSQIYSRSGGFMGISF
                     AIPIDVAMNVAEQLKNTGKVQRGQLGVIIQEVSYGLAQSFGLDKAGGALIAKILPGSP
                     AERAGLQAGDIVLSLDGGEIRSSGDLPVMVGAITPGKEVSLGVWRKGEEITIKVKLGN
                     AAEHIGASSKTDEAPYTEQQSGTFSVESAGITLQTHTDSSGGHLVVVRVSDAAERAGL
                     RRGDEILAVGQVPVNDEAGFRKAMDKAGKNVPLLIMRRGNTLFIALNLQ"
     gene            complement(10266..10895)
                     /gene="nth"
                     /locus_tag="ACFOCA_000951"
     CDS             complement(10266..10895)
                     /gene="nth"
                     /locus_tag="ACFOCA_000951"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFC6987687.1"
                     /translation="MNRHIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATD
                     VGVNKATAKLFPVADTPQAMLDLGLDGVMEYTKTIGLYKTKSKHIMQTCRILLEKYNG
                     EVPEDREALESLPGVGRKTANVVLNTAFGHPVMAVDTHIFRVSNRTKIAPGKDVREVE
                     DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQCQTCIINDLCEYPAKA"
     gene            complement(10941..11354)
                     /locus_tag="ACFOCA_000952"
     CDS             complement(10941..11354)
                     /locus_tag="ACFOCA_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFC6987688.1"
                     /translation="MMPAYAYAALAFSAFTSATLLPGTSEAAFALFVRRFPEHAYGAL
                     LCAGLANGLGSMVSYWMGRLLPSRKMPSEKTLNLMRRFGIWLLPFAWLPVVGDALPLA
                     AGWLRLNPWTSGLMLVIGKTARYAFILWGMQYYAA"
BASE COUNT         2680 a         3052 c         3169 g         2497 t
ORIGIN      
        1 cgaatttcga tttaacttcg gcacaccgtc tcaacagctt aaaatcctgc gggattggtg
       61 tgggatttag ggctaatcta gtacagcccc ttgttttttc gatacggaac cggatagagg
      121 aaaaatcgaa cattgcgcct gccttgctat gattcacgaa gaaatctgcg ccatgcctat
      181 gggctatgaa accttgatcg gcgatatggc agcgcactgt caggcggaca aaaacaacgc
      241 atcgtattgg cgcgggcctt atattgcgaa ccgaaaatcc tatttttaga tgcagcgacc
      301 agccatttgg atattgccaa tgaaaaagca gtcaatgcaa acttgaatgg cttgtctatc
      361 ataaaaatta tggcggcaca cagaaaggaa acggtggaat cagcagatag gaaaatgtct
      421 ttaggataaa aatacagttt caaaaatact caagattgct gctgtttttt cgcctgagcg
      481 tcaaactccg ccagcgtcat gttcaaagtc tgcaaacacg gtgtcattac cgcatcgaca
      541 gcttggttca catgatccct ttccacaggc aacggacggt aaacgaagag cttgaagagt
      601 tcgttcaact caatcgaatc cgcccccgtt ttcaacaccc aaccctgtct gccggaatag
      661 atgtagccgt gccgcgccag cttttccaaa agctcgccca actcgtcgta gcccatattg
      721 atatgccgtc tgaactcctg aacaggcaag gctttgcctt ctttttgcgc cgcatccaga
      781 agcagcagga ttttcaacac gtcgtcgaac cgtccgcgcg agtcgaagcc cctgcggaac
      841 gcttctcccc gccagtagga gagtgaagaa gtcagcaccg cgccgcccaa gaccagcgtc
      901 cacaacaggt tcagccacaa cagaaaaaac ggcacggcgg caaacgcgcc gtaaatcgag
      961 cggtagccgt cgaagttgcc catataccaa gtgaagaggg aacgtgcggt ttccagacag
     1021 aacgctgttg ccaaagcccc gacaaacgcc tgccgcgcgg gaacgaagcg gtttggcacg
     1081 aagcggtaca gcccccacag caaaagcgtc atgaaggtca gcgtcgccgc cgttcgcaac
     1141 gcgcccgacc actgcggcgc acctgaggca agcgcggcat cctgtaccga gccgaccata
     1201 aaggaaatgc ccacgcccaa agacagcggc ccgaacgtca gtaaagccca atagacgaga
     1261 aactgcatca tccacggacg ctgggaattg acccgccaga tgcggttgaa cgtattgtct
     1321 atcgtccgaa tcagcatcag cgaggtaacg accagcatca cgctgccgat tgccgtcagc
     1381 cggttcgcct gctcgcggaa cgcattgata tagtcgaaca ccatgtccgc gccctgcggc
     1441 acaatggttt ggttgacgaa ggagacgaac gaatccgacc agcggtcgaa cacggggaaa
     1501 atcgaagcga ccgccaccat cacggtcagc acggggacga gtgccagcag cgtcgtaaac
     1561 gtcatgcttg ccgccgcctg cggtacgcgt tcttcatcaa agcggcggac gacgaaccat
     1621 gcaaacgcac agattttatt gtctgccaaa ccttgcaaac gttgtaaaaa ggtcataatt
     1681 tcttgcccgg tcagtaagtt gggcattgat gcccgatgtt atagccaatt ttgccgtcag
     1741 gaacaaatgc ctgaactgcg gctgtttcag acggcatcgg aacaactgtt atgccgtctg
     1801 aagaccgaac cattttaacg gaatccgccc atgaacccaa atccccctca aaatcctcgt
     1861 cctctactat ttccaaaacg gtagcacccg caatcccgcc cgccgaatcg ctcgcggcat
     1921 cgacagcgtt gaaggttgcg aagccgtatt gcgcaccgtc cccaaagtct ccgccgtctg
     1981 cgaagccgtc aaaaaagata ttcccgacag cggctcccgt cctgaccgcc gaagaaaaca
     2041 atatcgcctt cgcacaaagc aaacgcttgg cggaactcgc catcaagtcg gcataagccg
     2101 cgtgttcaga cggcatggcg ttcagatgcc gtctgaacgc gtttgcctgt ataatccgcg
     2161 tctttactgt ccaacttcgc ggttcgcaaa cctcccgcgt taccaaaact aggattcgat
     2221 atgtcaaacc aaaaagcctt ggtcatcttt tcgggcggtc aggattcgac cacctgcctg
     2281 attcaggcaa tccaaatcta cgggcgcgaa aacgtccaag ccattacttt ccaatacggg
     2341 caacgccatg ccgtcgagct ggaacgtgcc cgctggattg cgcaggattt gggcgtcaaa
     2401 caaaccgtac tcgacttgag cctgatgcgg cagattacgc acaatgccct gatggacgac
     2461 accgccgcca tcgaaactgc cgaaaacggc gttccgaata cctttgtaga cggccgcaac
     2521 gcgcttttcc tgctctatgc cgcgatttac gccaaagggc aggggatacg gcacatcatc
     2581 gcgggcgtgt gcgaaaccga cttctccggc tatcctgact gccgcgacgt gttcgtcaaa
     2641 tccatgaacg ttacccttaa tttggcgatg gactatgatt tccaaatcca cacgccgctg
     2701 atgtatctga ccaaggcgca aacgtgggcg ttggcggacg aaatgggcgt gctggactat
     2761 atccgcgagc aaacccacac ctgctataac ggcatcgtcg gcggctgccg cgaatgcccg
     2821 agctgtatct tgcgcgaacg cgggctggcg gaatatctgg aaagtaaaaa ggccgtctga
     2881 acacgcgcaa accataagga atacgatatg cccaagctcc atatgtttta cctcggcggc
     2941 aatgccggca ggtcgaatat cgaagtgcac gacatccaat ttgccgtgtg cgacgactac
     3001 cgtgaagccg tccccgcact caaagccgcg tggttcggcg atgcggacaa aatccacatc
     3061 gacggctggc aggttgtcga atgggcggac ggttacgaca tcgccgtatc cgaaacgccc
     3121 aaaacggaaa tgccgtctga acacgccccg cgcctgtatt ttgccaatgt cggcggttat
     3181 cgcgcggggc agcttgccga ggcgcacgcg ttcgggctgt tcgccgccgc cacgcctgcc
     3241 gaagccaaac aaaaagccct gcaaaccctg ttgaccgacc atgttcagca acataaagac
     3301 aacttaaaag acgtggacaa cctgcttgcg ctcgaccgca tcggcaattt ccatatccgc
     3361 ctgaccccga atccgcacgg caaacccgcc gaaatcggct ttcaaggcta tttgcccatt
     3421 tgagaaccca tgaaaatcac caaaatcttc accttcgact cctcgcatat gctcgacggg
     3481 catgacggca aatgccaaaa cttgcacgga catacctaca aactcgaaat caccgtttca
     3541 gacggcatta tcaaaggcgg cgcgaaagac ggtatggtga tggactttac cgacttgaaa
     3601 gccattgtca aacaacacat taccgacccc ttcgaccacg ccttcatcta ccacggcggc
     3661 aacagccgcg aatctcaaat cgccgcactc ttggaaggct ggaacatgaa aaccctgcgc
     3721 ctgccctgcc gcaccactgc cgaaaatatg gcggtcgaaa tgtacgaccg tctgaaaaac
     3781 gcggggctga acgtgtgccg cgtcaaattg tgggaaacgc cgacatcgtg tgcggagtat
     3841 gaaggggagt agggaatatc ttgaacgtat cgatatagta aattccaata agacatgccc
     3901 aaccgcgtca ttcccgcgca ggcgggaatc cagaccttgg tttttcagga atatttaaaa
     3961 attgcagcaa ttccaaatct ttggattccc gcctgcgcgg aaaggacggt ttagagcgtc
     4021 cttatttgaa tttaccgtaa aacggttttt tctcctgtac ggattccccg ttttttcaga
     4081 cgaccctcca tatcaaatac acccattaaa aggaataccc atgaaacttc tctccaccct
     4141 cttagtcctc cttgtcaccg ccgaacattt ctacatcgcc tggcttgaaa tgacgcagat
     4201 tcccagcgaa aaagcggcgg aaatattcaa gctgccttat gaatttatgg aacaaaagcg
     4261 cgtgcagacc ctgttcggca accaagggct gtataacggc tttctcggca tcgggctggt
     4321 gtggtcgcgg tttgccgctc cggataacgc ggtgtacggc gcaacggtac tgtttctcgg
     4381 cttcgtcctg attgccgccg cgtggggcgc gttctcttcc ggcaacaaag gcatactcgt
     4441 caaacaaggt ttgcccgcat ttttggcagc ggcggcggtg ttggcggtat gaaaaaaatc
     4501 aatgttgccc ccgaaaatcc ccaataccgc atcgtcgaaa tctttgaaag cctgcaaggc
     4561 gaaggctgga acacgggcat acccgccgtt ttcgtccgct tgggcaaatg caacctcgcc
     4621 tgcggctggt gtgataccga ttatttgaca ttcggcatga tgagcctgtc cgacatctta
     4681 ggctgtctga aaacctatgc cgcccgcaac atcatcatca ccggcggcga accgaccatc
     4741 cagccgcatc tcgatatgct gctggacatg ctcaaggcgg aaggttattt cctctgtatc
     4801 gaaaccaacg gactcaatcc cgcgccgccg caaatcgact atgtcgccac cagccccaaa
     4861 gcctgctatg ccgccaaata cgaaaaaagc tgtatcgaaa cagccgacga agtgcggatt
     4921 gttgccgacg gcgatgtcct tgcgttctgt gaaaatatgg aacgcaaaat ccgcgcgcat
     4981 cattactacc tttcgccctg tgagcaagac ggtgcgatga acatctacga caccatccgc
     5041 caaatcggta ttttaaacag tcgccccgac gcatccgtgc attggcagtt gagcgtgcag
     5101 acgcacaaat gggcgggaat agagtagttt aagcagtgta actcaaaggg acggcgtacg
     5161 gttttaccga tgtttgacat acggggaaag tgtgccgctt ctgcgtggaa atgccggcat
     5221 ttccaccgcc caatcaggac ggagccttac tgaataagat gctgccgttg ggtacaagct
     5281 cggcttccta aattccgatg gtcttttgaa ccttgccgat actctgtgcc agtgcgcgca
     5341 aatggcaggg ttagggaaaa cgaaatgccg tctgaaacag cattctgttt cagacggcat
     5401 ttttctgttg acgccaaaag ggaaaaaccg ccccagcaat ccatgccgag gcggtttgaa
     5461 tatggtcgga atgagaggat tcgaacctcc gaccccttcg tcccgaacga agtgcgctac
     5521 cgggctgcgc tacattccga attaagtaag gcgtgattat agcgcaaaaa atacggcgtg
     5581 cctataccgt tttgcctttt tgccgcgtgt cgggcggatt taaaggagtg tgtttgaata
     5641 cagtgttgat aatcatcatt atctttaagt aattcaataa gataactttc tacctgaccg
     5701 aaaaaatcat tgcctttccc tgacaaacgg ttgatgaaat cggcagattg ttgaaacgca
     5761 gccggtttaa aaggcttcgc cgacttttac gccgcccgct gtatcctgcg gcgaggcaag
     5821 gccggcaaca aaggcttgcg cctcttggaa atccgccgtc tgcataacgg cttgcgcggc
     5881 ggcactgccg agcgtgttgg ccatatattg ccaacgttgc gccaaagcgg gattgtcagg
     5941 aatgcggaaa tcttcgcgca gttcgtccac aaggtcggga cggttgcaga cgaggacgat
     6001 gtcgcaacct gcctcaaagg aaatgcgggc gcgttctttg aggccgccga caccgcacgc
     6061 gccctccata gtcaaatcgt ccgagaaaat cacgcctttg aatccgatat cgcggcgcaa
     6121 aatttgtttg agccagattt cggaaaaccc tgcgggcttt gtgtccactt gtggataaac
     6181 gacgtgggcg ggcataaccg ccgccatacc ttcgcggctc ataatgtgga agggggcgag
     6241 gtcggcggct tcgagttcgg acaggctgcg cctgtcttcc ggcaagacca gatggctgtc
     6301 tccttcgaca aatccgtgtc cgggaaaatg tttgccgcag gatttcatac cgccttttgc
     6361 caaacctttt tgaagggcga gggcgaggtg ggcgaccgct tcgggattgt ggtggaaact
     6421 gcggttgccg atgacggggc agtttcccca gtccaaatct aagacgggcg tgaaggacaa
     6481 atcgatgccg caggcggaaa gctcggttgc caaaacccgg ccgacttgtc cggcggcggt
     6541 ttcggcggcg gacgcgccgt ctttgtccca aatctcgccg agcgtactca ttgcgggcag
     6601 gcgggtgaag ccttcgatga aacgttgcac cctgccgcct tcgtgatcga cggcgataat
     6661 gagttcgggt gtgcgcaggg ctttgatttc ggcggtgagt gttttgagtt gttcgatgtt
     6721 ttggaagttg cggcggaaga ggatgatgcc gcctacggcg ggatcgagca ggcgttgctt
     6781 ttcctcttcg gtcaggcgga aggcggcaat gtctgccatg acggggccgc gcggaatatg
     6841 ggggacggtc attgcggttt gctccaaaaa gcttcagacg gcatatgccg tctgaacagg
     6901 gaaaggggtc aggcgttggc gcgtttttta tctttcaaca gaaaaatcag caccgccaat
     6961 acaatgcctg tcgtgccaaa gcccaacagc gcggattttg tcagacccaa tgcgaggtag
     7021 cccgatgcgg cggcggcggc aacggttaag gcgtaaggca gttgcgaggt aacgtggtcg
     7081 atgtggttgc agcgcgcgcc tgtggacgac aggatggtcg tgtcggagat gggcgaacag
     7141 tggtcgccgc ataccgcccc cgccattact gcggacatac acgggataat cagtgaggga
     7201 tcgactttga ccgccatggc ggcggcaatc ggcagcataa tgccgaacgt cccccagctt
     7261 gtgcctgtgg caaacgccat cacgctggcg agcaggaaga ggatgacggg caggaagccg
     7321 ggatggatgt tgcccgcaac cagtgtggag aggtaatcgc cggtgtgcat ttcgccgaca
     7381 accgtactga tgagccaagc gaggattaaa atggcgattg cgccgaacat agatttcgca
     7441 ccctgccaaa cggctttggg atagtcggcg gttttaatcg tgccgagcgt gcagagaacg
     7501 acggcaagga cgccgcaagt gccgccgaat accagcgaag tgtttacgtc cgtgttttca
     7561 aatgccccca aaatgctgaa ggtttcgctt gcctgcgcgc cggtgtagat catggcggaa
     7621 accgttgagg cgattaaggc caaaacggga ataatcaatg cgtaaaccct gccccggctg
     7681 ccgtctgaaa cggcagtttc atcgtgggct tcgttcaacg cggcttgttc gaaacgcgcc
     7741 atcgagccga tgtcgaagga aaaccatgcg acgacgaaca ccataatcag ggcaaacagc
     7801 gcgtaatagt tcatcaggct catggcgaca aacgtcccca tcggcgtgta ttcggtgatt
     7861 ttgtaggtaa cgagcaatcc ggcaagcgtg gcgataatcg acgcgcccca acttgaaaca
     7921 ggcatcagca cgcacatagg cgcggcagtg gagtcgagga tgtaggcgag tttggcgcgg
     7981 gaaactttaa acttgtcggt aacggggcgg gcaatcgcac cgacggcgag gctgtggaaa
     8041 tagtcgtcga taaaggttac gaacacgagg caggcggtca gcattttcgc gccgcgccgg
     8101 tttttaatgt gccgttttgc ccagtcggca aacgcctgat tgctgccgga gtaggtcagc
     8161 agggaagtaa aaatacccaa aagtatcagg aaaaccagga tttttggttt gcccagcgac
     8221 caatcgccgt ctgaccaagc caagccgacg accatgtctt tcaggtgtgt cagaccgtcg
     8281 acggggttgc cgccgaccaa aaaggcaacg ccgaccagaa taccgatgcc taaagacagc
     8341 agtacgcggc gggtaatgat ggcaagtgcc agtgccaaaa agggtggcac aaccgagaaa
     8401 aatgaatgtg aatagtcgat cagctgcatg gttatggggg tgttaagcgt ccggatgggg
     8461 cggtttctgt ccgcaacggt tcggattttg ttggcaaaat gggcgaaagt attttctgtt
     8521 ccggaaaata cttatttgaa atcaattaac tgatttttta aaatgcccgt taatcggtat
     8581 tgacgggcat tttatcattt aaaaaatatt ttggttaaat tatgtgtgtt attgcaggtt
     8641 taatgcgata aacagcgtgt tgccacggcg catgatcagc agggggacgt ttttgcctgc
     8701 cttgtccata gctttgcgga aaccggcttc gtcattgacg gggacttgcc cgacggcaag
     8761 aatttcgtcg ccgcgcctca agcctgcgcg ttctgccgcg tcggaaaccc gtacgacgac
     8821 gaggtgtccg ccgctgctgt cggtatgtgt ctgaagggta atgcctgcgg attcgaccga
     8881 gaacgtaccg gattgctgtt cggtgtaggg ggcttcatct gttttggatg atgcgccgat
     8941 atgctcggcg gcgttgccca gcttgacttt gattgtgatt tcttcgcctt tgcgccatac
     9001 gccgaggctg acttcttttc ccggcgtaat ggcgccgacc ataacgggaa ggtcgccgga
     9061 agaacgtatt tctccgccgt cgaggctgag gacgatgtcg cccgcctgca ggccggcacg
     9121 ttctgcgggg ctgccgggca ggattttggc aatcagtgcg ccgccggctt tgtccaaacc
     9181 gaacgattgt gccaaaccgt aggatacttc ttgaataatc acgcccagtt gtccgcgttg
     9241 gactttgccg gtgtttttca gctgttcggc gacattcatg gcaacgtcaa tcgggatggc
     9301 gaaggaaatg cccatgaatc cgccgctgcg gctgtatatt tgcgagttga tgccgacgac
     9361 ctgtcctttt aagttgaaca gcgggccgcc ggagttgccc ggattgatgg caacgtcggt
     9421 ttggatgaaa ggtgtgtagc tttcgttggg caggcttctg cctttggcgg acacgatgcc
     9481 ggcggtcacg ctgttgtcga agccgaaggg cgcgccgatg gcagcgaccc attcgcctgg
     9541 tttcaaatct ttgggattgc cgattttgac gacgggcagc tcttccgttg cgtcgatttt
     9601 cagaagggcg acatcggatt ggacatccga accgatgagt ttggcggtat attcgcgctt
     9661 gtcgttgagc aggactttga tactgcccat gccggtaacg acgtgcgtat tggtcagaat
     9721 atagccgtct ttgctgatga tgaagcccga accgaagttc aatccgccgt catctgcttc
     9781 ttcttggggg atttcgggca tgttcgggac gaggcgtttg aaaaattcgt agaacgggtc
     9841 gctgtcggca agcgggtcgg aatcggtttc ggcattgctg ctgccgtttt gggtgcgcgg
     9901 ggcgggggct gcctgaatat tgacgactgc cgggccttcg ctttgaacca gttggacaaa
     9961 gtcgggcagc agcatactga cgctgccgtc gtctttggtg tgttcgatgc gttctacgaa
    10021 agatgcttct tttttgtccg caccgaaaaa gctgccggct ttgtcgcagc ctgccagcga
    10081 ggcggcacac agtgctgcca aagcgaggta ttggtatttt ttgaacacgt tttgtccttt
    10141 gtcggatgcc ggtaccggct ttaatgccgt ctgaagcgca ttttgtcggc ttcagacggc
    10201 ataggttgaa attctacaac gtccgtccga attttcaagc gtttcatttt gaagggcggc
    10261 ggcggtcagg ctttggcggg atattcgcac aaatcgttga tgatgcaggt ttggcattgc
    10321 ggtttgagtg ccttgcaggt gtagcgtccg tgcaaaatca gccagtggtg cgcgtccatc
    10381 agaaattctt taggaatgaa gcgcatcagt ttgtcttcga cttcgcgcac atctttcccg
    10441 ggggcgattt tggttcggtt ggacacgcgg aaaatatgcg tatcgaccgc cataacgggg
    10501 tgtccgaacg ctgtgttcaa taccacgttt gccgttttgc gccccacgcc aggcaacgat
    10561 tccaaagcct cgcggtcttc cggcacttcg ccgttgtatt tttccagcag gatgcggcag
    10621 gtttgcatga tgtgcttgga cttggtttta tacagcccga tggttttcgt gtattccatc
    10681 acgccgtcca aacccaaatc cagcatcgcc tgcggcgtat cggcaaccgg aaacagcttc
    10741 gccgtcgcct tgtttacgcc gacatcggtc gcctgcgccg aaagcagaac ggcaattaaa
    10801 agctcgaaag gggagttgaa attcagctcg gtggtcggat gggggttggc ggcgcggaag
    10861 cgttcgaaaa tttcttggcg gatgtgtctg ttcatttttt tgtgcagtcg gtttgtgcgg
    10921 tcggcattat aacgcacggt tcaggcggcg taatattgca ttccccacag aatgaaggcg
    10981 taacgcgccg ttttgccgat aaccagcatc agcccgcttg tccacggatt caaccgcagc
    11041 cagccggcgg caagcggcag tgcgtcgccg acgacgggca gccaggcaaa cggaagcagc
    11101 caaataccga aacgccgcat cagattcagt gttttttcag acggcatttt tcgggaaggc
    11161 agcaaacgtc ccatccaata ggaaaccata ctgcccaatc cgttggcaag gccggcgcac
    11221 agcaacgcgc cgtatgcgtg ttcgggaaag cggcggacga acagggcaaa ggcggcttcg
    11281 gatgtgccgg gcaggagggt ggcggaagtg aaggcggaaa aggcgagcgc ggcgtaggcg
    11341 taggcgggca tcattgcaaa cagtctcaaa caggcaaaaa tcggcgacgg attgtacg
//
LOCUS       DAXIFS010000051        11002 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.051, whole genome shotgun sequence.
ACCESSION   DAXIFS010000051 DAXIFS010000000
VERSION     DAXIFS010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11002
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.051"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(145..1290)
                     /gene="dapE"
                     /locus_tag="ACFOCA_000953"
     CDS             complement(145..1290)
                     /gene="dapE"
                     /locus_tag="ACFOCA_000953"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFC6987689.1"
                     /translation="MTETRSLELAKELIARPSVTPDDQNCQKLLAERLHKIGFAAEEL
                     HFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADM
                     KTSIACFVTACERFVAEHPDHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYC
                     IVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQ
                     EVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAI
                     LDKHGVQYDLQWSCSGQPFLTHAGKLTDVARAAIAETCGVETELSTTGGTSDGRFIKA
                     IAKELIELGPSNATIHQINENVRLEDIPKLSAVYEGILARLLAGNAV"
     gene            complement(1403..2023)
                     /locus_tag="ACFOCA_000954"
     CDS             complement(1403..2023)
                     /locus_tag="ACFOCA_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HI_0552 family protein"
                     /protein_id="HFC6987690.1"
                     /translation="MLTPKSCDLFNIPFFQFAQLKKYRPESIPQIKADYKENWQIWQQ
                     LIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYAQYKNSAAILSILLNRRRLSV
                     SLDWHCYKADVSPITLPDYNRWLDNFDTEKYAAFDMWHGAESEYDDHRTVAQQNESDR
                     KLQNDEDFFCIGKHIERDDLGRQDVAKWIAETVEDLLPLYEACHGK"
     gene            complement(2057..2566)
                     /locus_tag="ACFOCA_000955"
     CDS             complement(2057..2566)
                     /locus_tag="ACFOCA_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6987691.1"
                     /translation="MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGC
                     NQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHIGLHDN
                     WAAVSAEFAKLEADNAYVPDAEAFKRFVAGYDVHLAIEEPLFDMGNAFIPKEKLTEIG
                     EIMAARRRK"
     gene            complement(2661..3212)
                     /gene="azu"
                     /locus_tag="ACFOCA_000956"
     CDS             complement(2661..3212)
                     /gene="azu"
                     /locus_tag="ACFOCA_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HFC6987692.1"
                     /translation="MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAE
                     AAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGH
                     NLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADG
                     DYKFACTFPGHGALMNGKVTLVD"
     gene            complement(3493..3915)
                     /locus_tag="ACFOCA_000957"
     CDS             complement(3493..3915)
                     /locus_tag="ACFOCA_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HFC6987693.1"
                     /translation="MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQT
                     ACVEDGRLILLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNT
                     LHLSKAALESFGSAAAKLEKRHPELAEALANLVRRHGA"
     gene            4046..6796
                     /gene="secA"
                     /locus_tag="ACFOCA_000958"
     CDS             4046..6796
                     /gene="secA"
                     /locus_tag="ACFOCA_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFC6987694.1"
                     /translation="MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQ
                     AKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEM
                     RTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISD
                     MQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDE
                     ARTPLIISGQADDNIQLYQIINTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEH
                     AEQILTKMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEF
                     TGRLMSGRRWSEGLHQAVEAKESVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTE
                     AFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVG
                     TTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDI
                     VLGGNLKHQTDAIRSDENLSDEEKQAQIAALENGWQAEHDKVMEAGGLHIIGTERHES
                     RRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNL
                     LTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMKEIR
                     FDVVGGLVDLYMPPESMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNTIDGQDIKER
                     LIERIENEYAAKTELVGRQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQ
                     KNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAAVEEQPVGNIQSIHSES
                     PDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGK
                     LA"
     gene            6940..8712
                     /gene="dnaG"
                     /locus_tag="ACFOCA_000959"
     CDS             6940..8712
                     /gene="dnaG"
                     /locus_tag="ACFOCA_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFC6987695.1"
                     /translation="MIPSDFIDELLAKVDIVDIIDEQVPLKKGGANYMACCPFHKEKT
                     PSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQND
                     NPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPTAKAYLDKRGLGAEVIAHYGLGYA
                     PDGWQPLAQVFQPYPNTALVDTGMVIDNEGRHYDRFRHRIMFPIRNPRGQVIGFGGRV
                     LDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGY
                     GVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFL
                     FLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTS
                     SPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQ
                     PVMLTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAESIKNHAAVPETAQV
                     LEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ
                     KSLQSGLNESEKKLLLSLLTAKQN"
     gene            8900..10828
                     /gene="rpoD"
                     /locus_tag="ACFOCA_000960"
     CDS             8900..10828
                     /gene="rpoD"
                     /locus_tag="ACFOCA_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFC6987696.1"
                     /translation="MSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEI
                     NDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAA
                     LSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSI
                     AEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENED
                     DEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAI
                     ANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEI
                     TNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSS
                     EKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
                     FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLA
                     ELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE
                     VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRH
                     PTRSDRLRSFLDSEDSKL"
BASE COUNT         2871 a         3050 c         2736 g         2345 t
ORIGIN      
        1 aaggcgacga agccgcagac agtacaaata gtacggcaag gcgaggcaac gccgtactgg
       61 tttgaattta atccactata tctcaaaccc acattaggtc taatcaaatg gtcggacatc
      121 catatccgac agcccatttt cttttcagac ggcatttcca gccaacaagc gcgccaatat
      181 cccctcatac accgctgaca gcttcggaat atcttccagc cgcacgtttt cgttgatttg
      241 gtggatggtg gcattggacg ggcctaattc gatgagttct ttcgcaatgg ctttaatgaa
      301 gcgtccgtcc gaagtgccgc cggtggtgga cagttcggtc tccacgccgc aggtttcggc
      361 aatggctgcg cgtgccacgt cggtcagttt gcccgcatgg gtcagaaaag gctgccccga
      421 acacgaccac tgtaaatcgt attgcacgcc gtgtttgtcc aaaatggcgt gaacgcgttg
      481 tttcagccct gcttcggtgg actcggtgga gaagcggaaa ttgaatttga cattcagctc
      541 gcccggaatg acgttggtcg cgcctgtacc gccgttgata ttggaaattt gaaagctggt
      601 cggcggaaag tattcgttgc cttcgtccca gacttcctgc gtcagctcta acaaggccgg
      661 ggcaaaagtg tggacgggat tgattgccaa atgcggatag gcaatatgtc cttgcttgcc
      721 ttttacggtc aggttgcccg acagcgagcc gcgccggccg tttttaatca tatcgcccaa
      781 tttgtccacg gctgtcggtt cgccgacgat gcagtagtcg ataagctcgt cgcgcgcttt
      841 caatacatcg acgactttgg tcgtgccgtc caacgcgtcg ccctcttcgt cggaagtaat
      901 cagaagcgca atgctgcctt ggtggtcggg atgttcggca acgaagcgtt cacaggcggt
      961 aacgaagcag gcgatgctgg ttttcatgtc tgccgcgccg cgcccgtata atcttccgtc
     1021 gcgctcggcc ggttcgaacg ggggcgaatc ccatttttcg acaggacctg tcggtacaac
     1081 gtcggtatgc cctgcaaaac agacgacggg agctttcgtg ccgcgtcgca accagatgtt
     1141 tttggtgtcg ccgaaatgga gttcttcagc cgcaaaaccg attttgtgca ggcgttcggc
     1201 aagcagtttt tggcaatttt ggtcatctgg cgtaacggac ggtcgggcaa tcaattcttt
     1261 ggcgagttct agggatcggg tttcggtcat atttgttcac ttttgaaatt agaccgtctg
     1321 aaacgttctg aatgtgattt tcagacggca tttaggttag gttggcatac ggggtgggta
     1381 ttttacccat cagtcttctg aatcatttgc cgtggcaggc ttcataaagc ggcagcaaat
     1441 cttccaccgt ttccgctatc catttcgcga catcctgcct gcccaaatcg tcgcgttcga
     1501 tgtgtttgcc aatgcagaaa aagtcttcgt cgttttgcaa ctttcggtcg gactcgtttt
     1561 gttgcgcgac ggtgcggtgg tcgtcgtatt cgctttccgc gccgtgccac atatcgaatg
     1621 cggcgtattt ttcagtgtca aaattatcca gccatcggtt gtaatcgggc agagtaatcg
     1681 gcgacacgtc ggctttgtag cagtgccaat ccaagctgac actcagacgg cggcggttaa
     1741 gtagtatcga caggatggcg gcagagtttt tgtattgggc gtatttgaaa taggcaaaga
     1801 aatgggcgcg aacctgccag ccgttacacc agcgttcgat gtgcggcggc gcaaacggcg
     1861 cacccaattc ggcggcaacc tgctgaatca gctgctgcca tatctgccag ttttccttgt
     1921 agtcggcttt gatttgcgga atgctttcag gccggtattt tttaagctgg gcaaactgga
     1981 aaaacgggat attgaacaaa tcgcaacttt tcggggtcag cataatatat ccttgagacg
     2041 attgtttcag acggcattat ttgcgccggc gcgccgccat gatttcgccg atttcggtca
     2101 gtttttcttt tgggataaag gcgttgccca tatcaaacag cggctcttca atcgccaaat
     2161 gaacatcata tcccgccaca aaacgtttga acgcttccgc atcgggaaca taagcattgt
     2221 ctgcttcgag tttggcaaat tcggcggaaa cagccgccca gttgtcgtgc agcccgatat
     2281 gttggcgcaa aagctcgtcc acgctttctt gggcttgcgg cgcatattgc agcagcagcg
     2341 ggaagaagtt ttcttcttcg tcttcatggt gcagcggcgc ggcaacgttg aaatactggg
     2401 cgatttggcg gatggtttgc aaaacaatct gattgcagcc gttttcggcg atatagtccg
     2461 acagcatggc gacttgtccg caaaaacggc gcactttgcc gtggcaggca tacagcattt
     2521 caatcggttc ggcaaaggta acgcttttgg tttcaaacgg attcatgttt tcgttctcaa
     2581 cgggcacttt tcaagcagtc attttataat aaaacagcct gcacaaagca ggctgtccgt
     2641 cttttgagac tttaagcgga ttaatcgacc aaagtcactt tgccgttcat caaagcaccg
     2701 tgacccggga aggtgcaggc aaatttgtag tcgccgtcag ccaatttggc aggatccaga
     2761 gtcagggaag actcttcgcc gccgccgatc agtttggtgt gggcaacaac gcgcgcatcg
     2821 tcaggtttga catagtcggt atcggcagca cctacgccgt ctttaaatac gccgtccatg
     2881 tcttcagctt tggcaatcac aaggttgtga cccatgctgg ctttgggttg cgtaccggta
     2941 tgtttcagag tgatggtaaa ctctttacat gctttgctga cttggatgtc tttggtgttg
     3001 aactgcatat tgtcgttgga ttcgacagtt gccgcacaat tgccggcagc aggggcttcg
     3061 gcagcatctg caggagcagc ttcggcggca ggcgcttcgg aagcgggtgc ttcagcagca
     3121 ggagttgcct cggcagcagg cgcggcaggt tcttgagagc aggcagccaa accgataacg
     3181 gcggcagaaa tcagagccag ataagctttc atggtaaatc tccaatcgat aaaataatat
     3241 tcggttttac agaaatcaaa gtgcaaccgc cattaacaaa accttgaaaa agattccgcc
     3301 gcgttgcaca aacagatgtt tcggggcggc attttgctac aaatttcatt tgaaatcaaa
     3361 gcctgtctgc aagtttacaa tcgtttactt taaaaggggc aattttaccc cgaacctatt
     3421 tctttagtat tagacccatt atcctttact tcttaatatt aacggatgtt tacacaaatt
     3481 cccgtataca ttttatgcgc catgccttct aaccaagttt gccaatgcct ccgccaattc
     3541 gggatgccgt ttttccaact ttgccgccgc cgaaccgaaa ctctccagcg cagccttact
     3601 caaatgcagg gtattggttt tcggcggttt ttccggtttc gggaccagcc tgaccgaaac
     3661 agagcgtatc gaagcgtcaa gccctgccag ctgcggcaat accgacgggg caatcatctt
     3721 caagcgcgat gccgccatat tgtttgccgc caaaagaatc agcctgccgt cttcgacgca
     3781 ggccgtctga aaatgcgggt gcaggttggc aggcagcagt tttttcacgg cggcatccaa
     3841 ccgccgccac tgtcccgcct gtttcaaaag tccggaaagc agcgcgtccc gcctgcccaa
     3901 ctgttccaaa ttcataaaac atacacccaa aaagattgaa ataccgcaaa cgcgccttta
     3961 tttcagacgg cattagcact ttgcacaaac gcttgtgtta aaatcgcgtt ttcgcccact
     4021 attatatcag gcgcaggaat tattcatgct gacaaacatt gccaagaaaa tcttcggcag
     4081 ccgcaacgac cgcttgctga aacaataccg taaatccgtt gccagaatca acgcgctcga
     4141 agaacagatg caagccctaa gcgatgctga tctgcaagcc aaaactgccg aattcaaaca
     4201 acgcctcgcc gacggtcaga ctttggacgg cattttgccc gaagccttcg ccgtctgccg
     4261 cgaagcgtcc cgccgcaccc tcggtatgcg ccacttcgac gtgcagctta tcggcggtat
     4321 ggtgctgcac gacggcaaaa tcgccgaaat gcgtaccggc gaaggcaaaa ccctggtcgc
     4381 caccctcgcc gtctatctca acgcgctggc cggcaaaggc gtgcacgtcg ttaccgtcaa
     4441 cgactacctc gcctcgcgcg acgcaggcat tatggagccg ctctacaatt tcctcggcct
     4501 gaccgtcggc gtgattattt cagatatgca accgttcgac cgtcaaaacg cctatgccgc
     4561 cgatatcacc tacggcacca ataatgaatt cggcttcgac tacctgcgcg acaatatggt
     4621 taccgaccaa tacgacaaag tgcagcgcga attgaatttt gccgttgtcg atgaagtgga
     4681 ttccatcttg attgacgaag cgcgcactcc gctgattatc tccggtcagg cagacgacaa
     4741 catccagttg taccaaatca taaacaccgt cccgccccac ctcgtccgcc aagaaaccga
     4801 agaaggcgaa ggcgactact gggtagatga aaaggcgcac caggtcatcc tgagcgaggc
     4861 aggtcacgaa cacgccgagc aaatcctgac caaaatgggg ttgctggcag aaaacgactc
     4921 gctctattcc gccgccaaca tcgccctgat gcaccacctt atggccgcat tgcgcgcgca
     4981 ctcgctgttc cacaaagacc aacattacgt tatccaagac ggcgaaatcg tcatcgtgga
     5041 cgaatttaca ggtcgtctga tgtccggccg ccgctggtcg gagggtctgc accaagccgt
     5101 cgaagccaaa gaaagtgtgg aaatcaaacg cgaaaaccaa accctcgcct ccatcacctt
     5161 ccaaaactat ttccgcctgt acaccaagct ctccggtatg accggtacgg cagataccga
     5221 agctttcgag ttccaaagca tttataacct cgaaaccgtc attatcccga ccaaccgccc
     5281 cgtacagcgc aaagacttca acgaccagat tttccgttcc gccgaagaaa aattcgaagc
     5341 cgtcgtcaaa gacatcgagg aatgccacaa acgcgggcag cccgtcctcg tcggcaccac
     5401 cagcatcgaa aactccgaac tggtctccca ccttctgcaa aaagccggac tgccgcacaa
     5461 cgtcctcaac gccaaagaac acgaacgcga agccctgatt gtcgcccaag ccggcaaagt
     5521 cggtgcgatt accgttgcca ccaatatggc gggacgcggt acggacatcg ttttaggcgg
     5581 caacctgaag caccaaaccg atgccatccg atccgacgaa aacctgagcg acgaagagaa
     5641 acaggcacaa atcgccgcac tcgaaaacgg ctggcaggca gaacacgata aagtaatgga
     5701 agcaggcggt ttgcacatca tcggcacaga acgccacgaa agccgccgta tcgacaacca
     5761 gttgcgcgga cgctccggcc gtcagggcga ccccggatcc agccgtttct acctctcctt
     5821 tgaagacccg ctgctgcgcc tattcgcact cgaccgtgcc gccgccatcc tcaaccgcct
     5881 cgcacccgaa cgcggcgtcg ccatcgaaca caacctgctg acgcgccaaa tcgaaggcgc
     5941 gcaacgcaaa gtcgaaggca gaaacttcga tatgcgcaaa caggttttgg aatacgacga
     6001 cgttgccaac gaacagcgca aagtcattta cagccagcgc aacgaaattc tgaccagcaa
     6061 agacatcagc gacctgatga aggaaatccg ttttgatgtc gtcggcgggc ttgtagacct
     6121 ctatatgccg ccggaaagta tggaagagca gtgggatatt ccgaccctgg aaaaccgttt
     6181 ggctgccgaa ttcagactgc acgaagacat tcagtcctgg ctgaaagcag acaatacaat
     6241 tgacggtcaa gacatcaaag agcgcctgat cgaacgcatc gaaaacgaat atgccgccaa
     6301 aaccgaactg gtcggcaggc aggcgatggc ggatttcgag cgcaacgtga tgttgcaggt
     6361 catcgacaac caatggcgcg aacacctcgc cgctatggac tacctgcgcc aaggcataca
     6421 cctgcgcagc tatgcccaaa aaaatccgaa gcaggaatac aaacgcgaag ccttcacgat
     6481 gttccaagac ctgtggaacg gcatcaaatt ccatattgct tccctgctta cctcggttca
     6541 aatcgaacaa aaccctgtcg cggcggttga agagcaaccc gtcggcaaca tccagtccat
     6601 ccattccgaa tcgcccgata tggaagaact tttggggcaa tcgcaaaccg atctggttac
     6661 cgaagccttt aatcccgatg ggacggattt cagccccgaa gccttggaag cgcgggggca
     6721 aatcgtccac cgcaacgacc cctgcccctg cggcagcggt ttgaaataca aacaatgcca
     6781 cggcaaactg gcttgagcgt ttgaacgcaa atgccgtctg aacatccggt ttccggcttc
     6841 agacggcatt ttgcctgaac cgccacatcc gaccgccatt ccgaaaactc ccgatttcgt
     6901 accgtacaaa ctaaaaacag gcatccgccc cgccgaacta tgattccatc cgacttcatt
     6961 gacgaacttc tagccaaagt cgatattgtc gatattatcg acgagcaggt tccgctgaaa
     7021 aaaggcgggg cgaactatat ggcgtgttgc ccgttccaca aggaaaaaac accgtcgttt
     7081 tcggtcagtc cgaccaagca gttttatcat tgtttcagtt gcggggcgca tggttcggcg
     7141 attggttttg tgatggaaca tcaggggctg tcgtttccgg aggcggtgca gtttcttgcc
     7201 gaccgtgtgg gcatggttgt gcctaaagtg cgcgggcaga acgataatcc cgaagtccgt
     7261 gccgaacgta agaaaaaaca gcagacactg gaggaaacga cggctgcggc ggctgatttt
     7321 tacgcgcaac agttgaaatt caatccgacg gcgaaggctt atttggacaa gcgcggcttg
     7381 ggtgcagaag ttatcgcgca ttatggtttg ggctacgcgc ccgacggttg gcagcctttg
     7441 gcgcaagtgt tccaaccgta cccgaatact gcgttagtgg atacggggat ggtgattgac
     7501 aatgagggac ggcattacga ccgcttccgc catcggatta tgttccccat ccgcaatccg
     7561 cgcgggcagg tgatcggttt cggcggcagg gtgctggacg actcgaagcc gaaatattta
     7621 aattctcccg atacaccttt gtttgacaaa gggaaaaacc tttacggact gtatgaaggg
     7681 cgtgccgctg tcaaggaagc aggacgaatt ttggtggtcg aaggctatat ggacgtggtc
     7741 gcgctggcgc agttcggcgt gggctacggc gtagcggctt tgggtacggc aacgacggca
     7801 gaacacgtca aaatcctgat gcggcaggcg gacagtattt atttctgttt cgacggcgac
     7861 agcgcggggc gaaaagcggc ttggcgcgcg ctggaaaacg cgttgccgca gttgaaagac
     7921 gacaaatcgc tgcatttttt gttcctgccc gaggaacacg accccgacag ttacatccgt
     7981 gcctacggca aagcgcaatt tgaagacgcg cttctgaatc aaagcaagcc tttgtcggag
     8041 tatttctggg aacacctttc agacggcatt catctcaata cgcaggaagg caaggcggaa
     8101 ttggtgaaaa ccagttcgcc gcttttggcg cagattaccg cgccggcatt ggcttatttg
     8161 ttaaaacaac ggcttagcga actggtcggc atcgaccccg acaacctcgc gcaactgcta
     8221 ggacaggaag cgccgaagcg gcacgtcaaa caaaaaaact acaaactgcc tccgatttcc
     8281 gtcaaacagc ccgtcatgct gacgctggta cagcggcaaa tccgcagcct cttgataaat
     8341 ccggattggg ctgcatatat agacctgccc gattatctgg cgttggacgg tgatttcgcc
     8401 tgccttgcca atcttgccga atcgattaaa aaccatgccg ccgtacccga aaccgctcag
     8461 gttttagagt atatgcgcgg ctcgccttac gaagaaacga taacccgaat cttccattca
     8521 acgcaccaat cggaagaaat gaacagcagc agtgaagaag attgcgagaa tttccaaatc
     8581 ggcatgaaaa aactgctcaa tgagttaaaa tacagccaaa tcgaagcatt gaaacaaaaa
     8641 agcctgcaat ccggcttaaa tgaaagcgag aaaaaacttt tgctgtcgtt gctgaccgca
     8701 aaacaaaatt gaccggcgga ttccgccacc cgtaaacccg ttatgccgtc tgaaaagcac
     8761 ttaccccggc tgcaacaacg acacctgcag aacacccatc cccaaaagcc ttcagacggc
     8821 atcagagtac cctactctgc cacgccttca ggtgcgtcca aacgcaaacc gtcggcatct
     8881 tgccaacaga aagcagacaa tgtccaaaaa ccaaaatcac gaagaatacc aagacgatgc
     8941 ccgacccctg acgattgagg aacaacgcgc gcgcctgcgc caactcatca ttatgggcaa
     9001 agaacgcggc tacatcacct actccgaaat caatgacgca ctgcccgacg atatgtccga
     9061 tgccgatcaa atcgacaaca tcgtcagtat gatttccggt ttgggtatcc aagttaccga
     9121 acacgccccc gatgcggaag acatattgtt aagcgacaat gccgccgtta ccgacgatga
     9181 tgccgtcgaa gaagccgagg ccgccctttc cagcgccgac tccgagttcg gcaggacgac
     9241 cgaccccgtc cgtatgtata tgcgcgaaat gggacaggtc gacctgctga cccgcgaaga
     9301 cgaaatcatc atcgccaaaa aaatcgaaaa cgccctgaaa aatatggttc aggccatctc
     9361 cgcctgcccg ggatccattg cggaaatctt agaactcatc gaaaaaatcc gcaaagacga
     9421 aatccgcgtc gacgaagtcg tagaagccat tatcgacccg aatgaagtat tgctcaacga
     9481 attgggcttg gggcacttgg aaaccacagc gcccgagaaa ccttccaacg acaattcgga
     9541 cgaaaacgaa gacgacgaag aatcggaaga agatgcggat gaaatctcgg cagccaatct
     9601 cgccgaattg aaacaaaaag tcatcggcca ctttgcccaa atcgaaaaag actacaaaaa
     9661 aatgatcggt cgtttggaaa aacaccacag ccggcacaaa gactatctcg cctaccgcga
     9721 cgcgattgcc aacaaactgc tggaagtccg tttcgccacc cggcaaatcg acagcctcag
     9781 cagcagcctg cgcggaaaag tagaaaacat ccgcaaactc gaacgcgaaa tccgcgacat
     9841 ctgcctcgac cgcgtccata tggagcgcga ctacttcatc caaaacttcc tgcccgaaat
     9901 caccaatctg gaatggattg aagaagaaat cgccaaaggc agggtttgga gcgacgcgct
     9961 cgaccgcttc cgccacgcca tcctcgaaaa acaaaccgag ttggcagata tggaaaaaga
    10021 aacccgcatt tccatcgaag agttgaaaga aatcaacaaa aatatggtgt cgagcgaaaa
    10081 agaaaccgca gccgccaaac aggaaatgat tcaggcaaac ttgcgcctcg tcatttccat
    10141 tgccaaaaaa tacaccaacc gtggcttgca gttccttgat ttgattcagg aaggtaacat
    10201 cggcctgatg aaagcggtcg acaagttcga ataccgccgg ggctacaaat tctccaccta
    10261 cgcaacctgg tggatccgcc aggcaatcac ccgttcgatt gccgatcagg cgcgtaccat
    10321 ccgcattccg gtacatatga ttgaaaccat caacaagatg aaccgcatct cgcgccaaca
    10381 ccttcaagaa accggcgaag aacccgattc cgccaaactt gccgaactga tgcagatgcc
    10441 cgaagacaaa atccgcaaaa tcatgaaaat cgccaaagag ccgatttcga tggaaacccc
    10501 catcggcgac gacgacgatt cgcacttggg cgacttcatc gaagatgcca acaatgttgc
    10561 gccggccgat gcggcaatgt acaccagcct gcacgaagta accaaagaaa tcctcgaaag
    10621 cctgacaccg cgtgaggcaa aagtcctgcg tatgcgtttc ggcatcgata tgaacaccga
    10681 ccacacgctg gaagaagtcg gcagacagtt tgacgtaacg cgcgaacgca tccgacaaat
    10741 cgaggcaaaa gcactccgca agctgcggca tccgacaaga agcgaccgtt tgagaagttt
    10801 cttggacagc gaagacagca agctgtaaac caaaaaaccg caggtttcaa atacctgcgg
    10861 ttttttctta cacaataaac aacgcttcca catatcccac actcctatcc cgagaccttt
    10921 gcaaaatccc ccaaaatccc ctaaattccc accaagacat ttaggagcac cttcttccaa
    10981 caaaccgccc aagccatgat tg
//
LOCUS       DAXIFS010000052        10908 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.052, whole genome shotgun sequence.
ACCESSION   DAXIFS010000052 DAXIFS010000000
VERSION     DAXIFS010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10908
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.052"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            69..1466
                     /gene="aspA"
                     /locus_tag="ACFOCA_000961"
     CDS             69..1466
                     /gene="aspA"
                     /locus_tag="ACFOCA_000961"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFC6987697.1"
                     /translation="MTVRIEHDLLGDREIPAEVYWGIHTLRAIENFKISTQKISDVPQ
                     FVRSMVMVKKATAQANGELGAVKPEIAAAIEKACDEVLLNNRCLDQFPSDVYQGGAGT
                     SVNMNTNEVIANLALEALGYEKGRYDIVNPMDHVNASQSTNDAYPTGFRLAVYYSIGE
                     LLDKLTVLKNAFTAKAEEFKDVLKMGRTQLQDAVPMTAGQEFQSFQVLLEEEILNLDR
                     TRQLLLEVNLGATAIGTGVNTPKGYAELVVKKLSEVSGLPCKLTENLIEATSDCGAYV
                     MVHGALKRTAVKLSKICNDLRLLSSGPRAGLKEINLPELQAGSSIMPAKVNPVIPEVV
                     NQVCFKVIGNDTTITFAAEAGQLQLNVMEPVIAQCMFETISLLGNAAVNLSDKCVKGI
                     TVNREICERYVFNSIGLVTYLNPYIGHHNGDLVGKICAQTGKGVREVVLERGLLSEEE
                     LNRILSPENLMNPHL"
     gene            complement(1538..2413)
                     /locus_tag="ACFOCA_000962"
     CDS             complement(1538..2413)
                     /locus_tag="ACFOCA_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HFC6987698.1"
                     /translation="MAYLLISIVFSVSVSILLKMARKKKIDIAQAVAVNYVVAVILTL
                     LVLKPDIGNIGAFLPTWPLFAALGVLLPSVFVIMGKSVEAAGIVKSDAAQRLSLFLPI
                     VAALTLFGEKLSEGKLIGLCLAFAALFCLLWKHGGGKKSGSAWRQAALLLGVWAGYGI
                     IDILFKQLAKSGTAFSGNLLVAFVLAGVLMFACLFAKSVRWRVESVVGGILLGGLNFM
                     NIVTYITAHQMMKDNPTLVFAGMNIGVIVLGTLSGALFFKEKINTINTAGIVLALCSI
                     ACLFYWAEVKALFGI"
     gene            complement(2415..3107)
                     /locus_tag="ACFOCA_000963"
     CDS             complement(2415..3107)
                     /locus_tag="ACFOCA_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFC6987699.1"
                     /translation="MDKDLYAVLGVSPQAGADEIKRAYRKLAMKYHPDRNPGNPQAEE
                     KFKEIQRAYDTLSDLSKRTQYDASFRGHEERGRQEEAFRREQARREQFYREQMRREQA
                     LRQAFERQASRSRHAYEPSGGGSGRNYVLAAYILFGLGAIMLFMPIVGVILAYMKRNS
                     LDSIVYAAHTEYLIKTFWRTFWLYILGALTALLGIGVLIIIATNVWYFYRIIAGFIRF
                     NGGRAVAPEKWI"
     gene            complement(3129..3608)
                     /gene="ybaK"
                     /locus_tag="ACFOCA_000964"
     CDS             complement(3129..3608)
                     /gene="ybaK"
                     /locus_tag="ACFOCA_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HFC6987700.1"
                     /translation="MSKQTYPVTPAVRVLRENGIKFEPFIYPYEEHGGTAQFAHLFGK
                     DEHLVIKTIVLQDENGKGLIVLMHGDKQISTRNLARHLGAKHIEPATPAQANKWTGYL
                     VGGTTPFGIRTKLDIYVEQSVMDLETIYINGGKRGFIIGIRPGDLNILNPKTIQAAV"
     gene            3684..4046
                     /locus_tag="ACFOCA_000965"
     CDS             3684..4046
                     /locus_tag="ACFOCA_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6987701.1"
                     /translation="MDIRYFGTTPRYSEAVGANGLIFLSGMVPENGETAAEQTADVLA
                     QIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARP
                     EWRVEIKITAVKKDAATE"
     gene            4081..4944
                     /locus_tag="ACFOCA_000966"
     CDS             4081..4944
                     /locus_tag="ACFOCA_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HFC6987702.1"
                     /translation="MKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYN
                     TPKGRVIANMIVVNRGDDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVGAEL
                     AASAEPLAAQEPCLAFTAECGSDGICSVVLPHRGILHIAPETALPPYDAAAENAWRLH
                     EILSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAV
                     LSGNSAVEAGTLLTADGEETGIVLDSVKDSESFTALAVIKFSAAQKELTVPNGGIFKA
                     VHPFFKTENAE"
     gene            5042..6001
                     /gene="ttcA"
                     /locus_tag="ACFOCA_000967"
     CDS             5042..6001
                     /gene="ttcA"
                     /locus_tag="ACFOCA_000967"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFC6987703.1"
                     /translation="MSKKTKQELENNKLSKRLRHAVGDAINDFNMIEPDDKIIVCLSG
                     GKDSYALLDILRQLQASAPIDFELVAVNLDQKQPGFPEEVLPTYLESIGVPYKIVEED
                     TYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATMFLNMFY
                     GGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPIIPCNLCGSQPNLQRQ
                     VIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLERGQTLKHGGDLAFD
                     SEKMPERFSDGSEEDESEIKIAPQKAERKVINILANKPKTCGA"
     gene            complement(6095..9034)
                     /locus_tag="ACFOCA_000968"
     CDS             complement(6095..9034)
                     /locus_tag="ACFOCA_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction-modification system
                     endonuclease"
                     /protein_id="HFC6987704.1"
                     /translation="MSGFNYEKNQPHQMRAVSAVLGVFDGATPKYRTADENPELLFAA
                     KQYANNILKVQSQNGIDGRFPDRSDDQNILDISMETGTGKTYTYTQTMFELHRWLGVF
                     KFIVVVPTLSIKAGTQQFLQSKALAEHFEQDFGGDYEGVRLKTYVVESAKKNKGKKSN
                     APITIEQFVKAENKKEIHVLLINAGMVNSSSMNDTGDKALKDLFDNPVDALAAVRPFV
                     IVDEPHKFPTRESAKTWGNIKRLKPQYILRYGATFNDEYYNLLYRLTAVDAFNDGLVK
                     GVRVFQEEMQGGMDAAVKLVSSGGKEAKFELNEKDKKQTFKLAKGEDLAQIHPAISDL
                     KIDKMNKTVVVLSNGLELKTGAVINPYSYSQTVQDAMMQRAVAEHFKLERALLAERAP
                     QPKIKPLTLFFIDDIAGYRSGNELSGSLKDKFESWIRVEAARRLKTESDPFYRDYLQK
                     TLDDVSACHGGYFSKDNTDSDDRIEQEINEILHDKEKLLSLDNPRRFIFSKWTLREGW
                     DNPNVFQICKLRSSGSTTSKLQEVGRGLRLPVNELMARVRDVPYKLNYFVDSSEKDFV
                     KQLVGEINDNSFQEEISKKFTEELKQKILQKYPDIKPLVLVNQLFSDGIIDDNENFAE
                     DGYDKLKAAYPEAFPKGLDKGKVSNAKDEGKDTIIMREGKYEELKALWELIHHKAVLQ
                     YKIKDEAEFVDLFTAYLRENAAKFPQAGIRTAVNEAYINNGLMLSRRIDSFEDEDFIR
                     FNTMTYRELLEKLAQTAKIRMQTLHQAFYRVRDELNIGDFLNMQTIAQIKNGFNRFLL
                     HHSFHKFELDYRLVGSKIHPTKFTDKDGKPRAVKKADLGRFEDTEHRPAAGYLFDEIF
                     YDSDIEHENVANNQIEGVTVFTKIPRNSIKIPVAGGGTYSPDFAYIVKTKSGEILNFV
                     IEAKGTDGAEDLRKSEERKIKHAEKLFAEISKEIKVVFKTQFDGERIAELIGQNMPAG
                     GHSENGH"
     gene            complement(9047..>10908)
                     /locus_tag="ACFOCA_000969"
     CDS             complement(9047..>10908)
                     /locus_tag="ACFOCA_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HFC6987705.1"
                     /translation="NTEAIYTSDGITANSTQLEQLKKLFPACFDADGNFLIDRLQAEI
                     APQTDIGREFYEMNWLGKSYARLLRNLPPETLISEDKTHNAKPENAGSQNLLIRGDNL
                     EVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDEAARIL
                     DFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEVFGEGN
                     FIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHFDNLKRPKDIRGKKIVINDELYW
                     IQEDAVREQFGKYGNLHYEDIIEIKGIEFKNKIDKDIENNEYILIPKSYGKTIIGKLR
                     KVSDDFSKFHSILNIGNISKNLTKDGIRELEELFETGKGYSPFETPKPLDLLKRLVLS
                     ATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRYICVQLPEKTAEKSEARKAG
                     YPTIFDITKARIEKAAAKIRVEHPDYTGDSGFKIFQTADNFRQHPDKDFSPEQPDLPL
                     NDELSEEQLQTLLTTWTLYDGAALTTPVEPVRLGAYTAYLCEKRLYLMNAGFTSADLL
                     AFIRKLDDDAAFNPNRVIVFGSNMASAMQHELDQAVRGYANKKEIELNVVIRV"
BASE COUNT         2620 a         2916 c         2579 g         2793 t
ORIGIN      
        1 tcctgcggcg gcatctttcc gatggcgcat tttttcaata ttaattatcc gacttacaaa
       61 ggtaaaacat gactgtccgt atcgaacacg atttattggg cgaccgcgag attcccgccg
      121 aagtgtattg gggcatccac actctgcgcg ccattgaaaa ctttaaaatc tccacacaaa
      181 aaatttccga cgtgccgcag tttgtccgca gtatggtgat ggtgaaaaaa gcaaccgcgc
      241 aggcaaacgg cgaattgggt gcagtaaaac ccgaaatcgc cgccgccatt gaaaaggctt
      301 gcgacgaagt tctgctgaac aaccgctgcc tcgaccaatt cccctccgac gtgtatcagg
      361 gcggtgcggg aacttcggtc aatatgaaca ccaacgaagt catcgccaac ctcgcattgg
      421 aagccttggg atacgaaaaa ggccgctacg acatcgtcaa tccgatggat catgtcaatg
      481 ccagccaatc gaccaacgat gcctatccca cgggcttccg ccttgccgtg tattacagca
      541 tcggcgaatt gctcgacaaa ctgaccgtcc tgaaaaacgc ctttaccgcc aaagccgaag
      601 aatttaaaga cgttttgaaa atgggtcgca cccagcttca agatgccgta ccgatgacgg
      661 caggacaaga attccaatct ttccaagtgt tgttggaaga agaaatcctc aacctcgacc
      721 gcacgcgcca actgctttta gaagtcaatt tgggcgcaac ggcaatcggc acgggcgtga
      781 acacgcccaa aggctacgcc gaactggtgg tcaaaaaact ctccgaagtc agcggcttgc
      841 cttgcaaact gaccgaaaac ctgattgagg cgacctccga ctgcggcgca tatgtgatgg
      901 tacacggcgc attgaagcgc acggcggtca aactctccaa aatctgcaac gacttgcgcc
      961 tgctctcttc cggcccgcgt gccggcttga aagaaatcaa cctgcccgaa ttacaggccg
     1021 gttcttccat tatgcctgcc aaagtcaatc ccgtgattcc cgaagtggtc aaccaagtct
     1081 gcttcaaagt catcggcaac gacacgacga ttaccttcgc cgccgaagcc gggcaactgc
     1141 aattaaacgt gatggagccg gtcatcgccc aatgtatgtt tgaaaccatt tccctcttgg
     1201 gcaatgccgc agtcaacctg tccgacaaat gcgtcaaagg cattacggtc aaccgcgaaa
     1261 tctgcgaacg ttacgttttc aactccatcg gtttggtgac ttatctgaat ccgtatatcg
     1321 gacaccacaa cggcgatttg gtcggcaaaa tctgcgccca aaccggcaaa ggcgtgcgcg
     1381 aggttgtctt ggaacgcggg ctgttgagcg aagaagaact caaccgcatc ctctctcccg
     1441 agaacctgat gaacccccat ctgtaacgtt gcagacaaat gccgtctgaa gcagggatgc
     1501 tgcttcagac ggcattttgt tatatcaatc agccggatta tatgccgaac agtgccttga
     1561 cctccgccca ataaaacagg caggcgatgg aacacagtgc caacacgatt cccgccgtat
     1621 tgattgtgtt gattttttcc ttaaaaaaca gtgcgcccga aagcgtcccc aaaacaatca
     1681 cgccgatatt cataccggca aaaaccagcg tgggattgtc cttcatcatt tggtgcgcgg
     1741 tgatgtaggt tacgatgttc atgaagttca aaccgcccaa gagtatgccg ccgaccacac
     1801 tctcaacgcg ccatctgacc gatttggcaa acaggcaggc aaacatcagc acacctgcca
     1861 gcacaaatgc aaccagcagg ttgcctgaaa atgccgtgcc gcttttggca agctgtttga
     1921 acaggatgtc gataatgccg taacccgccc acacgcccag cagcaatgcc gcctgccgcc
     1981 acgcgctgcc tgattttttg ccgccgccgt gtttccaaag caggcagaac agcgcggcaa
     2041 atgcgaggca cagcccgatt agtttgcctt cgctgagttt ttcgccaaac agcgtcaagg
     2101 cggcaacaat cggcaaaaac agcgacaaac gctgcgccgc gtcggatttg acgataccgg
     2161 cggcttccac agatttgccc attatcacga atacggacgg cagcagcacg cccaaagcgg
     2221 caaacagcgg ccacgtcggc aaaaatgcgc cgatattgcc gatatccggc ttcaatacca
     2281 gcagggtcag tatgaccgcg accacataat tgacggcgac cgcctgcgcg atgtcgattt
     2341 ttttcttcct tgccattttc agcaaaatgg aaaccgacac gctgaacacg atgctgatta
     2401 acaggtaagc catactatat ccatttctcg ggggcaaccg ccctgccgcc gttgaagcgg
     2461 ataaagccgg cgatgatgcg gtagaaatac cagacgttcg ttgcaataat aatcagcacg
     2521 ccgataccca aaagggcagt cagcgcaccc aaaatataaa gccaaaatgt gcgccaaaag
     2581 gttttaatca ggtattcggt atgtgcggca tagacaatgc tgtccaaact gttccgtttc
     2641 atataggcga gaatcacgcc gactatgggc atgaacagca tgattgcacc caaaccgaac
     2701 aggatgtagg cggcgaggac atagttgcgc ccgcttccgc cgccggacgg ttcgtaagca
     2761 tggcgcgaac gtgaggcctg ccgttcaaac gcctgtctta acgcctgttc gcggcgcatc
     2821 tgttcgcggt aaaactgctc cctgcgcgcc tgttcacggc ggaatgcctc ttcctgccgc
     2881 ccgcgttcct catgccctct gaaagacgcg tcgtattgcg tccgtttcga caggtcggaa
     2941 agcgtatcgt aagcccgttg gatttctttg aacttttctt ccgcctgcgg attacccgga
     3001 ttgcggtcgg gatggtattt catcgccagc ttgcggtagg cgcgtttgat ttcgtccgcc
     3061 cccgcctgcg gcgacacgcc caatacggca tacaaatctt tgtccatatt gctccttata
     3121 cttccccgtc aaaccgctgc ctgtattgtt ttcgggttca aaatatttaa atctccggga
     3181 cggatgccga taatgaaccc gcgttttccg ccgttgatat agatggtttc caaatccatc
     3241 accgactgtt cgacgtaaat atccaatttt gtccggatgc cgaacggcgt tgtgccgccg
     3301 accagatagc ccgtccactt gtttgcctgt gcgggcgtgg cgggttcgat gtgtttcgca
     3361 cccaaatgcc gcgccagatt gcgggttgaa atctgtttgt cgccgtgcat caagacaatc
     3421 agccccttac cgttttcatc ttgcaaaaca atggttttaa taaccaagtg ttcgtctttg
     3481 ccgaacaggt gcgcaaattg ggccgtaccg ccgtgttcct cgtagggata gatgaaaggt
     3541 tcgaacttga tgccgttttc acgcaaaacg cgtacggcag gtgttaccgg ataggtctgt
     3601 ttactcattt ttcgtcatgc aaaacatgga aatcacccaa atgcaatgtt accatatatc
     3661 cccctttatt gaaggaaacc gatatggata tccgatattt cggcacaacg ccccgctatt
     3721 ccgaagccgt cggcgcaaac ggcttgattt tcctctccgg catggttccc gaaaacggtg
     3781 aaacggctgc cgaacagact gccgacgtgc ttgcccaaat cgaccgctgg ctggcggaat
     3841 gcggctcgga caaggcacac gttttagatg cggtcatcta tctgcgcgat atgggcgact
     3901 acgcggaaat gaacggcgtg tgggacgctt gggttgccgc cggcagaacg cctgcccgcg
     3961 cctgcgtgga agctcggctc gcccgtccgg agtggcgcgt cgaaatcaaa ataaccgccg
     4021 tgaagaaaga cgcggcaacc gaataaacag atttccttta tatttcagag tacgcaaatg
     4081 atgaaaacct tactgccctt tttcggcgtg gtgcgcgtca gcggcgaaga ccgccaaacc
     4141 ttcctgcacg gacagctttc caacgacatc aataatcttc agaccgggca ggcgtgttat
     4201 gcgacttaca acacgcccaa aggccgcgtc atcgccaata tgattgtcgt caaccgtgga
     4261 gacgatttgc tgctgattat ggcgcaagac ttgcttgaag caacggtcaa acgtttgcgg
     4321 atgtttgtgt tgcgtgccaa agccgttttt gaaatccttg aagattacgc cgtcggcgcg
     4381 gaattggcag catccgccga accgcttgcc gcgcaagaac cctgccttgc ctttaccgcc
     4441 gaatgcggtt cagacggcat ctgttccgtc gtcctgcccc atcggggcat tttgcacatc
     4501 gcccccgaaa ccgccctgcc gccttatgat gccgccgccg aaaacgcgtg gcggctgcac
     4561 gaaatcctca gcggttatcc gtggatatgc gcggctacca aagaaactgc cgttgcccaa
     4621 atgctcaacc agcacatcat cggcggcgtt cacttcaaaa aaggctgcta cccgggacag
     4681 gaaatcattg cccgtgccca gtatcggggg caggtcaaac gcggcttggc ggtattgtcg
     4741 ggaaattcgg ccgtcgaagc aggaaccctg ctgacggcag acggcgaaga gaccggcatc
     4801 gtgctcgaca gcgttaaaga ttcggaaagc tttaccgccc ttgccgtgat taaattctcc
     4861 gccgcacaaa aagaactgac cgtcccaaac ggcggtatct tcaaagcggt tcatcccttc
     4921 tttaaaaccg aaaatgcaga ataatccctc taatgccgtc tgaacctttt tcagacggca
     4981 ttttaaaatc gcccctgttt tcggttacaa tgccgcatcc ctaatttttc aaaccaccgc
     5041 catgtccaaa aaaaccaaac aagaactcga aaacaacaaa ctcagcaaac gcctgcgcca
     5101 cgccgtcggc gacgcgatta acgatttcaa tatgatcgag ccggacgaca aaatcatagt
     5161 ctgcctctcc ggcggcaaag acagctatgc cctgttagac atcctgcgcc agctccaagc
     5221 cagcgcgccg attgattttg aactggtcgc cgtcaatctc gaccaaaagc agccgggttt
     5281 ccccgaagaa gtattgccga cctatctcga aagcataggc gtgccgtaca aaatcgtcga
     5341 agaagacacc tactccaccg tcaaacgcgt attagacgaa ggcaaaacga cttgttcgct
     5401 gtgcagccgc ctgcgccgcg gcatcctcta ccgcaccgca aaagaattgg gctgcaccaa
     5461 aatcgcctta ggacaccacc gtgacgacat ccttgccacc atgtttttaa atatgtttta
     5521 cggtggaaaa ctcaaagcca tgccgcccaa gctggtgagc gacaacggcg aacacatcgt
     5581 catccgtccg ctggcgtatg taaaagaaaa agacttaatc aaatacgccg aattaaaaca
     5641 attccccatc atcccgtgca acctctgcgg ctcgcaaccc aacctgcaac gccaagtcat
     5701 cggcgatatg ctgcgcgatt gggacaaacg ctttcccggc cgcatcgaat cgatgttctc
     5761 cgccctgcaa aacgtcgtcc cttcccacct tgccgatacc gaactcttcg actttgccgg
     5821 attggaacgc ggtcaaaccc tgaaacacgg cggcgatttg gcgtttgaca gcgaaaaaat
     5881 gcccgaacgt ttttcagacg gcagcgaaga agacgaaagc gaaatcaaaa tcgcgccgca
     5941 aaaagccgaa cgcaaagtca tcaacattct ggcgaacaag ccgaaaacct gcggcgcgta
     6001 accccccgcc gtcaaaaatg ccgtctgaag cccgtttggc gtttcagacg gcattttaaa
     6061 atcccgaagc agacggcttc caaacatttg tttctcagtg tccgttttca gaatgcccgc
     6121 ctgcgggcat attttgcccg atcagttcgg ctatcctctc gccgtcaaac tgcgttttga
     6181 acaccacctt gatttctttg gaaatctcgg caaacagctt ttcggcatgt ttgattttcc
     6241 gctcttcgct ttttcgcaaa tcttccgccc cgtcagtccc tttggcttca atcacaaagt
     6301 tcagaatctc gccgcttttg gttttcacga tataggcaaa atcgggcgaa tacgtgccgc
     6361 cgccggcaac ggggattttg atggagtttc tcggtatttt ggtgaatacg gttacgcctt
     6421 caatttggtt gttggcgaca ttttcatgtt ctatatccga atcgtagaaa atttcgtcga
     6481 agagatagcc ggcggcaggc cggtgctccg tatcttcaaa tctgcccaaa tctgcttttt
     6541 tcaccgcgcg cggtttgccg tctttatcgg taaatttggt cggatggatt ttgctgccga
     6601 caagccggta atccagttca aatttatgga aggaatgatg aagcaaaaac cggttgaagc
     6661 cgtttttgat ttgggcgatg gtctgcatat tcaaaaaatc gccaatgttc agttcgtcgc
     6721 ggacgcgata aaacgcctga tgcaaagtct gcatgcggat ttttgccgtt tgtgccagtt
     6781 tttccagaag ctcacggtaa gtcattgtgt taaaacggat aaaatcttca tcttcaaaac
     6841 tgtctatgcg gcgggaaagc ataagcccgt tgttgatata agcttcgttt accgccgtgc
     6901 gtatgcctgc ctgcgggaat ttggcggcgt tttcacgcaa ataggcggta aataaatcga
     6961 caaattcggc ttcatccttg attttgtact gcaaaacggc tttatggtga atcagctccc
     7021 acaaggcttt gagttcttca tatttgcctt cgcgcatgat gatggtgtct ttgccctcgt
     7081 ctttggcgtt gctgactttg cctttgtcca aacctttggg gaaggcttcg ggataggcgg
     7141 cttttaattt gtcatagccg tcttcggcaa agttttcatt gtcgtcaatg atgccgtctg
     7201 aaaacagttg gtttaccaat accagcggtt tgatatcggg gtatttttgc aatatttttt
     7261 gtttcagctc ttcggtaaac tttttggaga tttcttcctg aaaagaattg tcgttgattt
     7321 cgccgacaag ctgcttcaca aagtcttttt cgctgctatc gacaaaataa ttcagtttgt
     7381 acggtacatc gcgcacccgc gccatcagct cgtttaccgg caggcgcagg ccgcgtccga
     7441 cttcttgcag cttggaagtc gtgctgccgc tggaacgcag tttgcaaatc tggaaaacgt
     7501 tgggattgtc ccagccttcg cgcagcgtcc atttggaaaa aataaagcgg cgcgggttgt
     7561 ccaaagacag cagtttttcc ttatcgtgca ggatttcatt gatttcctgc tcgattctat
     7621 cgtcgctgtc tgtattgtct ttggaaaaat agccgccgtg gcaggcggat acatcgtcca
     7681 acgtcttttg caggtaatcg cggtaaaacg ggtcgctttc cgttttcaga cggcgtgccg
     7741 cttccacgcg aatccagctt tcaaatttat ctttcaggct gcctgaaagc tcgttgccgc
     7801 tgcggtagcc cgcgatatcg tcaataaaaa acagcgtcag cggcttgatt ttgggctgtg
     7861 gcgcgcgttc tgccaaaagc gcgcgttcca gcttgaaatg ttcggcaacc gcccgctgca
     7921 tcatcgcatc ctgcaccgtt tgcgaatagg aataagggtt gatgacggca cccgttttca
     7981 actccaagcc gttgcttaac accaccacgg ttttattcat tttgtcgatt ttcaaatccg
     8041 aaatagccgg atggatttgc gccaaatctt cgccttttgc cagtttgaac gtctgctttt
     8101 tgtccttttc gtttaattca aatttcgctt ctttgccgcc cgacgacacc agttttaccg
     8161 ccgcatccat gccgccctgc atttcttcct gaaacacgcg cacgcctttg accagcccgt
     8221 cgttaaacgc gtctactgcc gtcaaacggt aaagcaagtt gtaatattca tcgttaaatg
     8281 tcgcaccgta gcgcaaaata tattgcggtt ttaagcgttt gatattgccc cacgttttcg
     8341 cgctctcccg ggtcgggaat ttatgcggtt cgtccacaat cacaaacggg cgcacggcgg
     8401 ccaatgcatc aacgggattg tcaaacaaat ctttcaatgc cttgtcgccc gtatcgttca
     8461 tggacgacga attaaccatg cccgcgttaa tcagcagcac atggatttcc tttttgtttt
     8521 ccgctttgac aaattgctca atcgttatgg gcgcattgga ctttttgccc ttattctttt
     8581 tcgcgctttc caccacatag gttttcaggc gcacgccttc ataatcgccg ccgaaatcct
     8641 gttcaaaatg ctctgccaaa gccttgcttt gcaaaaactg ctgtgttccc gccttaatgg
     8701 acaaagtcgg cacgaccacg ataaatttga acacgcccag ccaacggtgc agctcgaaca
     8761 tggtttgtgt gtaggtatag gttttgcccg tgcccgtttc catggaaata tcaaggatat
     8821 tttggtcgtc cgaacggtcg gggaatcggc cgtctatacc gttttggctt tgcactttca
     8881 ggatattgtt tgcgtattgt tttgcagcaa acaaaagttc gggattttcg tctgccgtcc
     8941 gatatttggg cgttgccccg tcaaacacgc ccaaaaccgc cgaaaccgcc cgcatttggt
     9001 gcggctggtt tttctcgtaa ttaaaaccgc tcatgaattg cctccgtcaa accctgataa
     9061 ccacattcaa ctcaatctct tttttattgg cataaccgcg aaccgcctgg tcaagttcgt
     9121 gctgcatggc gcttgccata ttgctgccga atacaatcac gcggttggga ttgaaagccg
     9181 catcgtcgtc cagcttgcgg ataaacgcca acaaatcggc agaagtaaaa ccggcattca
     9241 tcagatacag ccgtttttcg cacagatacg ccgtgtaagc ccctaaccgc acaggctcaa
     9301 ccggcgtggt cagtgccgcc ccgtcataca gcgtccaggt ggtcagaagc gtttgcagct
     9361 gttcttcgct taattcatcg ttaagcggca aatccggttg ttcgggcgaa aaatccttgt
     9421 ccggatgctg cctgaaattg tctgccgttt gaaagatttt gaagcccgaa tcgcccgtgt
     9481 aatcgggatg ttcgacgcgg attttggcgg cggctttttc tatgcgggct ttggtgatgt
     9541 cgaagatggt cgggtagcct gctttacggg cttcggattt ttcagcggtt ttttcgggaa
     9601 gctgtacaca gatatagcgg cggttaccgt tttgtccttc ggcgttaagc tgcatcacgg
     9661 cgtgggcggt tgtgccgctg cctgcgaaga agtctaggat taggtcagtt tgatttccct
     9721 tgaaagttgc agaaagaact aatcttttca ataaatctaa tggttttggt gtttcaaaag
     9781 gagaataacc ttttccagtt tcaaacaact cttctaattc acgaatacca tctttagtaa
     9841 gatttttact tatatttcca atatttaaga tgctatgaaa tttggaaaaa tcatcggata
     9901 cttttctaag ttttccaata attgttttcc cataagactt cggaattaag atatattcat
     9961 tattttcaat atctttatca attttgtttt taaactcaat tccttttatt tcaataatat
    10021 cttcgtaatg caagttccca tatttgccaa actgttcgcg aacggcatct tcctgtatcc
    10081 aatataattc atcattgatt acaatttttt tgccgcgtat atcttttggt ctttttagat
    10141 tgtcaaaatg agtaatatct ttcgcataaa ctaaaacagt ttcatgccca tttacaacat
    10201 attttgcatt accaccacct tctgatgtat taacaattaa atctttaata aaattccctt
    10261 ccccaaacac ttcatcacac aacaacttca actgcgccgc ttcgttatcg tcaatcgaga
    10321 taaaaatcac gccgtcgtcc tttaacagtt cgcgggcgat atacaggcgc ggatacataa
    10381 aggtcaacca tgcactgtgc gagtttgagc ctttgtcggt gaaatctaaa atccgcgcgg
    10441 cttcgtcttc gtcaatattg gctaagcagg caagttcggc tggtgtgaat ttgcggtcgt
    10501 cctgatagac aaagccgtct gatccggtgt tgtagggcgg gtcgatgtaa atcatcttca
    10561 cgctgtttgt gtaggcgttt tttaagtgtt tcaacacttc tagattgtcg ccacgaatca
    10621 gtaggttttg gctgcctgca ttttcgggtt tggcgttgtg cgtcttgtct tcacttatca
    10681 gggtttcggg cggcaggttg cgaagcaggc gagcatatga tttgcccagc cagttcattt
    10741 cgtaaaattc gcgtccgatg tcggtctgtg gcgcaatttc ggcttgtaat ctgtcgataa
    10801 ggaaatttcc gtctgcgtca aaacaggcgg gaaacagttt tttgagctgt tcgagttggg
    10861 tagagttggc ggtaatgccg tctgaagtgt agattgcctc ggtgttca
//
LOCUS       DAXIFS010000053        10829 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.053, whole genome shotgun sequence.
ACCESSION   DAXIFS010000053 DAXIFS010000000
VERSION     DAXIFS010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10829
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.053"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(210..932)
                     /gene="rmpM"
                     /locus_tag="ACFOCA_000970"
     CDS             complement(210..932)
                     /gene="rmpM"
                     /locus_tag="ACFOCA_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding outer membrane protein
                     RmpM"
                     /protein_id="HFC6987706.1"
                     /translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
                     GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPVVVVEQAPQYVDETISLSAKTL
                     FGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVA
                     NNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR
                     VDVKIRSIVTRQVVPAHNHHQH"
     gene            1296..2246
                     /locus_tag="ACFOCA_000971"
     CDS             1296..2246
                     /locus_tag="ACFOCA_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HFC6987707.1"
                     /translation="MKLQQLKYALEVYQHNLNVSEAAEALFTSQPGISKQIKLLEEEI
                     GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
                     QARYALPLIVADFVKRYPKVNLTIKQGSPAAIARMVTSGEADLAIVTERIDDHPELGK
                     LPCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
                     QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
                     RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
     gene            complement(2359..3093)
                     /gene="fnr"
                     /locus_tag="ACFOCA_000972"
     CDS             complement(2359..3093)
                     /gene="fnr"
                     /locus_tag="ACFOCA_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HFC6987708.1"
                     /translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
                     RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
                     HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTYFFRMMSREIVRDQGVMLLLGNMRA
                     EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
                     SVEHKHIKILNLQVLKKMVSGCSHAI"
     gene            3298..4719
                     /gene="hemN"
                     /locus_tag="ACFOCA_000973"
     CDS             3298..4719
                     /gene="hemN"
                     /locus_tag="ACFOCA_000973"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFC6987709.1"
                     /translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
                     DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
                     YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
                     EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
                     FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTASV
                     PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
                     CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
                     LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
                     NIAMVFDYHLRHKETKAKYSQTV"
     gene            complement(5072..6646)
                     /locus_tag="ACFOCA_000974"
     CDS             complement(5072..6646)
                     /locus_tag="ACFOCA_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFC6987710.1"
                     /translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
                     IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
                     TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
                     VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
                     TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
                     GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
                     FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
                     AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
                     TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNANWKLMKPIGLAWVITLPA
                     AAVLSVVCYLVLQAVF"
     gene            6971..8071
                     /locus_tag="ACFOCA_000975"
     CDS             6971..8071
                     /locus_tag="ACFOCA_000975"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HFC6987711.1"
                     /translation="METQLYIGIMSGTSMDGADAVLIRMDGGKWLGAEGHAFTPYPDR
                     LRRQLLDLQDTGADELHRSRILSQELSRLYAQTAAELLCSQNLAPSDITALGCHGQTV
                     RHAPEHGYSIQLADLPLLAERTRIFTVGDFRSRDLAAGGQGAPLVPAFHEALFRDNRE
                     TRAVLNIGGIANISVLPPDAPAFGFDTGPGNMLMDAWTQAHWQLPYDKNGAKAAQGNI
                     LPQLLDRLLAHPYFARPHPKSTGRELFALNWLETYLDGGENRYDVLRTLSRFTAQTVF
                     DAVSHAAADTRQMYICGGGIRNPVLMADLAECFGTRVSLHSTAELNLDPQWVEAAAFA
                     WLAACWINRIPGSPHKATGASKPCILGAGYYY"
     gene            8190..9131
                     /gene="mafA"
                     /locus_tag="ACFOCA_000976"
     CDS             8190..9131
                     /gene="mafA"
                     /locus_tag="ACFOCA_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6987712.1"
                     /translation="MKTLLLLIPLVLTACGTLTGIPAHGGGKRFAVEQELVAASSRAA
                     VKEMDLSALKGRKAALYVSVMGDQGSGNISGGRYSIDALIRGGYHNNPESATQYSYPA
                     YDTTATTKSDALSSVTTSTSLLNAPAAALTKNSGRKGERSAGLSVNGTGDYRNETLLA
                     NPRDVSFLTNLIQTVFYLRGIEVVPPEYADTDVFVTVDVFGTVRSRTELHLYNAETLK
                     AQTKLEYFAVDRDSRKLLIAPETAAYESQYQEQYALWMGPYSVGKTVKASDRLMVDFS
                     DITPYGDTTAQNRPDFKQNNGKNPDVGNEVIRRRKGG"
     gene            9135..10631
                     /gene="mafB"
                     /locus_tag="ACFOCA_000977"
     CDS             9135..10631
                     /gene="mafB"
                     /locus_tag="ACFOCA_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6987713.1"
                     /translation="MKPLRRLTNLLAACAVAAAAFGQPALAADLAQDPFITDNAQRQH
                     YEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLIQQAAIQGNLGYTVRFSGHG
                     HEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGA
                     RDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKL
                     DRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
                     AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKA
                     AVSGDFSAAYNTRTTRKVTTETEGLNRIRQNQKNSNIHEKNYGRDNPNHINVLSGNSI
                     QHILYGDEAGGGHLFPGKPGKTTFPQHWSASKITHEISDIVTSPKTQWYAQTGTGGKY
                     IAKGRPARWVSYETRDGIRIRTVYEPATGKVVTAFPDRTSNPKYNPVK"
     gene            10646..>10829
                     /locus_tag="ACFOCA_000978"
     CDS             10646..>10829
                     /locus_tag="ACFOCA_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6987714.1"
                     /translation="MKTLDERIKNLGKSLEDRIDANLIDAALEYITFSERLLAFETLC
                     DYIEDFNIQLTEKESQE"
BASE COUNT         2845 a         3130 c         2585 g         2269 t
ORIGIN      
        1 gcggcaatgg gacacaaacc tgaatctgaa tccgaacctg caccccgatt ctgacgatag
       61 ccgtttcaga aaaccaccca aaaaaacaaa ccccgcaaaa gcgggggttt gtttcacatc
      121 atcgatgccg accgacgttt cacgaatatt gcaacagtac ctggtacaaa atccactaac
      181 ctcatgcatc ggcaagatat tgcctagcct tagtgttggt gatgattgtg tgccggcaca
      241 acctgacggg ttacgatgct gcggattttc acatccacac ggcggtcagg ttcgatacat
      301 gcaatcagag cctcacgttt tttggcttta gagactttcg cacccagttt ggcaacttcg
      361 gcttcacaaa cttgagtcat ttgcgcttga gattcgccca agccgacagc agaaattcta
      421 gaaacaggta cgccgttgct gaccaggttg tttgccacta cgtatgcgcg gcgttcggac
      481 agggcctgat tgtatttgtc agaacccata aagtcggtat ggccttcgac gcggacagat
      541 tggatattgg tttgacccag gcgttgcgcc aatactttca ggttgtcttg agcttcggcg
      601 cgcaatgaat ccttatcgaa accgaacagg gttttggcag acagggaaat ggtttcatca
      661 acatattgcg gagcctgctc cacaacgacg acaggagcgg gttcgggttc tggctcgggt
      721 tcgggggcag caaccgcatc gccgcattct acgcgacctt ggcttgcttt atcaaagtag
      781 gcgtttttcc agcattcgcc atagttgttg cgtacgattt cgttcgactg gccgcttacg
      841 gtgtaaccct gaacggacgc ctcgcccgca acagcagtgc cggaagcgag caatgcaacg
      901 aataatgcgc ttaatttcag ctgtttggtc attttattcc ctcattaaat ttgtacagca
      961 gatacagaag caactgctga attgccaaca tacaggccgc tgtagaaaca tggcggcaaa
     1021 tcggatattt cagtctccac tataaagaag cagggggagg actgtcaata ctcaacgcct
     1081 gaaaacaacc gtaaaacagc ctgtttcctg atagtctatc atgccgaaaa atcaattccg
     1141 tgtcattact ttagggggat tttttccata tcgcacgatt gccgttgcac aaaaacaaca
     1201 aacacaacgg caaagcccca taccgtaccg gcaagaaaat atgataaatt ataaacaatg
     1261 ttcagccacc cgacacagac ccacaccgac ccgccatgaa attacaacaa ttgaaatacg
     1321 ccttagaagt ttaccagcac aacctgaacg tttccgaagc ggccgaagcc ttgtttactt
     1381 cgcaacccgg catctccaaa caaatcaaat tgctggaaga agaaatcggc attcagattt
     1441 ttatccgcag cggcaagcgc gtggtttcgg tctcgcagcc gggcaaggtg gttttggata
     1501 ttgcggaacg tattttacgc gatgtacaga acattaaaaa tatcggcagc gagtttaccg
     1561 gacaggacag cggttcgctg acggttgcca cgacgcatac tcaggcacgc tatgccctac
     1621 ccttgattgt tgccgatttt gtgaaacgct atccgaaagt caacctgacc atcaaacagg
     1681 ggagccctgc cgccatcgca cgtatggtta cctcaggcga ggcggacttg gcgattgtta
     1741 cggaacggat agacgaccat cccgaactgg gaaaacttcc ctgctatgac tggactcatg
     1801 cggttatcgt accgaacgac caccccttgc tcgaatgcag aaaccccctc cgcattgaag
     1861 atttggcgag gtttccgctg attacttatg aatttgcatt caatgcgggc agcagcatcg
     1921 cgcgggcatt ttccaaagcc cgtttggaac agccggatgt cgcattggcg gcggcggata
     1981 cggacgtatt gaagacttat gtgcgcttgg gtttgggcgt gggactgatg gcgaaaatgg
     2041 cgtacaaccc ggatacggac ggcgatttgc agcttgtgga tgcggcacac ctgttcgagc
     2101 cgtcgccgac gtggattgct ttgcgcagcg atacttattt gcgcggatat gcctacgact
     2161 ttatccaagc gtttgcgccg cacctgacac gcgagaaggt ggataggatt ctgtacacgc
     2221 ccatcagcga ggatttttcg atttaggcgg ctgccggttt tcagacggca ctttgcggca
     2281 gatacaacaa acaggacaga tgttttcgtc tgccctgtgt ttattgagaa tgccgtctga
     2341 aatgttcgta cgggttaatc aaatggcgtg cgaacaaccg gataccatct tcttcaacac
     2401 ctgcagattg aggatcttga tgtgtttgtg ttcgacggaa atcaatcctt cctgatgaaa
     2461 tttagataat gtgcggctga cggtttcaag tttcagcccg agataactgc cgatttcttc
     2521 gcgggacatt cttaagatga agtcgttggc agcaaaacct cgggaataaa ggcgttggga
     2581 aaggttcaac agaaaggcgg caatccgctc ttcggcgcgc atattgccca acagcagcat
     2641 aacaccttgg tcgcgcacga tttcacgact catcatgcgg aaaaagtagg tacgcaggct
     2701 ggggatattc tgccccagtt cttcgatgtg ggtaaacggc agttcgcaca cttcgctgtc
     2761 ttccaaggcg accgcgtcgc aactgtgcac atgggaacag atgccgtcca tgccgatgag
     2821 ttcgcccgac ataaagaaac ccgttacctg atcgcggccg tcctgactgg cgacggttgt
     2881 tttgaagaag cccgaacgga tggcaaagag cgaggtaaag gcttcgccga cacagaacag
     2941 gtattcgccc tttttcaggc ggcggctttg acggatgacg gcatcgagtt ggctgagctc
     3001 gttgggcagc agcccgacag gcaggcagag ttcccgcaaa gaacaggaag aacacagcgt
     3061 tttcatctga tgtgtagtat tatgcgaagc cataccgtac ctttttgtgc gctttgcccc
     3121 atcatgatta tagtggatta aatttaaacc agtacggcgt tgcctcgcct tgtccttatt
     3181 taaatttaat ccactatatg tgcttattga cacatatcaa gacaggttta tcatactgtg
     3241 gcattctacc aaactatcca aaatttgact aacatcataa aaccgcacac acacaccatg
     3301 aaaatcattc agatacagaa caatcacaat gtaaacgatg accgccccga gtttgaccgc
     3361 gcgctgattg ccagcctgcc cgccagcggc ccgcgctaca cttcctaccc taccgccgac
     3421 cgtttccatg acggtttccg cgaaggcgaa tatatcaaag ctttacattt gcgcggtatg
     3481 ggcgcgttaa acaaaccgct ttccctttac attcacattc cgttctgcaa caccatctgc
     3541 tactactgcg gctgcaacaa aatcatcacc aaagacaaaa gccgcgccga tgcctacatc
     3601 gaatatcttg aaaaagaaat ggaactgctc gctccacatc tgaacggacg gcaccagctt
     3661 gcccaactgc acttcggcgg cggcacgccg acctttttga gcgacgaaca gatcgaacgt
     3721 gtcttccgca tgatacgcaa acatttcgag ttaatcccca ccggcgaata ctccatcgaa
     3781 atcgacccgc gcaaagtcag ccgcgacacc gtcctcatgc tcggcagact cggcttcaac
     3841 cgcatgagca tcggcattca ggatttcgac cccaaagtgc aggcagcggt caaccgcatc
     3901 caaagttacg aagaaaccaa agaagtcatc gatgcggcgc gcgaagcggg gttcaaatcc
     3961 gtcagcgtcg atttgattta cggcctgccg caccagactt cggaaagcat caaaaccacc
     4021 atcgataccg ttttgtcgct cgatcccgac cgcctcgccc tttatcacta cgcccacctg
     4081 ccgcacgtgt tcaaaccgca acgccgcatc gataccgcct ccgtccccga cagcgaagag
     4141 aagctcgata tgctgcaata ctgcgtccaa accctaaccg aacgcggcta cgtcttcatc
     4201 ggcatggatc atttcgccaa acctgacgac gaactctcca tcgccctcaa agaaggcttc
     4261 ctccagcgca acttccaagg ctattcgacc tacgcggatt gcgatttggt cgccatcggc
     4321 gtgtcgtcca tcggcaaaat cggcagcacc tattcccaaa acgaacgcga catcgatgcc
     4381 tactatgccg ccatcgacga aggcagactg cccatcatgc gcggttatca gctcaatcag
     4441 gacgacatcc tgcgccgcaa tatcattcag gatttgatgt gccgcttcgc gctcgactac
     4501 cggatttacg aaagtatgtt cggcatcccg ttcgaccgct acttcaaaga cgaactggcg
     4561 gatttggaaa aactcgccgg tttgggattg gtgcgcctga acagccacgg gctgaccgtt
     4621 accccgaaag gacgcttcct catccgcaac atcgccatgg tgttcgacta ccacctgcgc
     4681 cacaaggaaa ccaaggcgaa atattcgcaa acggtgtgat tgcgtctaac gtacaaatgc
     4741 cgtctgaaag gctttttcag acggcatttt gctgccggca ggataagtgt tttcaagaac
     4801 aggcggcggc atatcataac gttccgcacc tttgtgtccg accgttccga aaccaagata
     4861 tagtggatta acaaaaacca gtacagcgtt gcctcgcctt gccgtactat ctgtactgtc
     4921 tgcggcttcg tcgccttgtc ctgatttttg ttaatcacta taccaaacgg catatcccga
     4981 cagaacagat tgtgcataag gcacaagccc gcacattcca tcaacaaaat gccgtctgaa
     5041 cacgggttca gacggcatca gtattttaca atcagaatac tgcctgtaaa accaagtagc
     5101 agacaaccga caatacggcg gcggcaggca gggtaatgac ccacgccaaa ccgatgggct
     5161 tcatcagttt ccagttggca ttgcggttga ccagaccgat gccgagtacc gcgccgacca
     5221 agatatgcgt actggacacg ggcagcccca tcagcgacgc gcccatcacg acggatgcgg
     5281 cggacagttc ggcggtaaaa cccgaggcgg ggtgcatttc cgccaaactc gtaccgacgg
     5341 ttttaatcac ctctttaccg acaaaccaca aaccgacaat cagcgcgatg ccgaaagtca
     5401 gcatcgcaat cggggggacg acattttgcg cggcaacgct gttggtacgc aaaacatcca
     5461 taatcgcggc aaacggaccg atggcgttgg cgatatcgtt cgccccgtgg ctgaatgcga
     5521 agccgcaggc ggtaaagacc tgcatccatg aaaacatctg aaaggtcgat ttgcccaagt
     5581 ctttacgctt gaggcttttg gcaaacacaa acgtccccat ccacaccgcc gcgcctatca
     5641 taaagatggt caggaagctg ttgacgttgc tcatccccaa atgcaggttt ttcaagccct
     5701 tgaaaatcag catagcggaa atcatcatcg cgccgaacga agcgataaag ggaatccaag
     5761 aatgcagtgc tttgtaggaa tcgacattgt ttttacggtt gtcgaacgca taaagaccgc
     5821 ggtaatactc cgattgcagc tcttgcggat cgaattcggg ttcgtcgtaa atttgcgcgt
     5881 cgtgcgccat tttggtggcg tactcgactt tttcggcttc ggacaaaccc tcgaaaaaca
     5941 ggcggtgccg ttctttatag gccttttttt cctgcttgat gcccttgagc gtgccttccg
     6001 cccaagcgtt gtaatctaag acgtttttct tgacgcgcga aaacaggaaa taggacaccg
     6061 cgccgcccaa cacgggcgac aatacccaag aaacaccaat accgcccagc ttgccccaac
     6121 gtatcaaatc gcccgatgcg gcatcgttca ttaccgccat acataccgcg ctgccgacaa
     6181 tgccgccgat aatggaatgg gtggtagata ccggaagccc ttttttcgag gcaaacaaca
     6241 gccacaacgc cgccgccaaa agcgcggaca tcataataaa cacaaactgt atgggttcga
     6301 aatcaacacc cttcaaatcg acgatgcctt tgcgtatggt attggttacc tcgccgcccg
     6361 cgatgaccgc gccgctgacc tcaaataccg ccgcaatcag caaagcctgc gggatggtca
     6421 gcgtacccgc accgacgctg gtgccgaaag aattggcaac atcgttgccg ccgatgttga
     6481 acgccataaa cacgccgaac atcgtggcaa taatgaataa ggcggcgtaa ttgtaatggg
     6541 tataacccaa gccccaataa ataaaatagc cgactgtacc taccagcatg gcggcaaaga
     6601 cggcgttgat ggttttaaca tttgcgctca tttggatttg agccatggca atcttccttt
     6661 aatgtggtgg aaatcatgag tgttgccgac actgtactgc tgcctccggt cgaactgccg
     6721 tttcgggata tggcagacgc atccttcctt ctgaaccgca tccaaatacc cccaaacctg
     6781 accgaatgca aaactgctgc cggaaacggt ttgtatgaca cttctactac tggatgttgc
     6841 gggcgcatta taatattttt ccatccgtct tgaaacattt atttacactt tatttacact
     6901 gcggcggcaa atcggtatac gagcgtcaat acacgttaaa atggcgtttt gcaccagttt
     6961 gggagtgatg atggaaacac agctttacat cggcatcatg tcgggaacca gcatggacgg
     7021 ggcggatgcc gtactgatac ggatggacgg cggcaaatgg ctgggcgcgg aagggcacgc
     7081 ctttaccccc tatcccgaca ggctgcgccg ccaattgctg gatttgcagg acacaggcgc
     7141 agacgaactg caccgcagca ggattttgtc gcaagaactc agccgcctgt acgcgcaaac
     7201 cgccgccgaa ctgctgtgca gtcaaaacct cgcaccatcc gacattaccg ccctcggctg
     7261 ccacgggcaa accgtccgac acgcgccgga acacggttac agcatacagc ttgccgattt
     7321 gccgctgctg gcggaacgga cgcggatttt taccgtcggc gacttccgca gccgcgacct
     7381 tgcggccggc ggacaaggcg cgccactcgt ccccgccttt cacgaagccc tgttccgcga
     7441 caacagggaa acacgcgcgg tactgaacat cggcgggatt gccaacatca gcgtactccc
     7501 ccccgacgca cccgccttcg gcttcgacac agggccgggc aatatgctga tggacgcgtg
     7561 gacgcaggca cactggcagc ttccttacga caaaaacggt gcaaaggcgg cacaaggcaa
     7621 catattgccg caactgctcg acaggctgct cgcccacccg tatttcgcac gaccccaccc
     7681 caaaagcacg gggcgcgaac tgtttgccct aaattggctc gaaacctacc ttgacggcgg
     7741 cgaaaaccga tacgacgtat tgcggacgct ttcccgtttt accgcgcaaa ccgttttcga
     7801 cgccgtctca cacgcagcgg cagatacccg tcaaatgtat atttgcggcg gcggcatccg
     7861 caatcctgtt ttaatggcgg atttggcaga atgtttcggc acacgcgttt ccctgcacag
     7921 caccgccgaa ctgaacctcg atcctcaatg ggtggaggca gccgcatttg cgtggttggc
     7981 ggcgtgttgg attaaccgca ttcccggcag cccgcacaaa gcaaccggcg catccaaacc
     8041 gtgtattctg ggcgcgggat attattattg agcgcaaata ccgtctgaaa gccatttccg
     8101 ccgctcagac ggcattttcg ccccttttgt ttacaaaccc ttaaaatcca tttacactca
     8161 aactcgttca aaacaaaaca aaccctgcca tgaaaaccct gcttctcctc atccccctcg
     8221 tcctaaccgc ctgcggcaca ctgaccggca tacccgccca cggcggcggc aaacgctttg
     8281 ccgtcgaaca agaactcgtc gccgcatcgt cccgcgccgc cgtcaaagaa atggatttgt
     8341 ccgccctgaa aggacgcaaa gccgcccttt acgtctccgt tatgggcgac caaggttcgg
     8401 gcaacataag cggcggacgc tactctatcg acgcactgat acgcggcggc taccacaaca
     8461 accccgaaag tgccacccaa tacagctacc ccgcctacga cactaccgcc accaccaaat
     8521 ccgacgcgct ctccagcgta accacttcca catcgctttt gaacgccccc gccgccgccc
     8581 tgacgaaaaa cagcggacgc aaaggcgaac gctccgccgg actgtccgtc aacggcacgg
     8641 gcgactaccg caacgaaacc ctgctcgcca atccccgcga cgtttccttc ctgaccaacc
     8701 tcatccaaac cgtcttctac ctgcgcggca tcgaagtcgt accgcccgaa tacgccgaca
     8761 ccgacgtatt cgtaaccgtc gacgtattcg gcaccgtccg cagccgtacc gaactgcacc
     8821 tctacaacgc cgaaaccctt aaagcccaaa ccaagctcga atatttcgcc gtcgaccgcg
     8881 acagccggaa actgctgatt gcccctgaaa ccgccgccta cgaatcccaa taccaagaac
     8941 aatacgccct ctggatggga ccttacagcg tcggcaaaac cgtcaaagcc tcagaccgcc
     9001 tgatggtcga tttctccgac atcaccccct acggcgacac aaccgcccaa aaccgtcccg
     9061 acttcaaaca aaacaacggt aaaaaccccg atgtcggcaa cgaagtcatc cgccgccgca
     9121 aaggaggata aaccgtgaaa ccgctgcgca gactgacaaa cctccttgcc gcctgcgccg
     9181 tagcggccgc cgccttcgga cagcccgccc tcgcagcgga cttggcgcaa gacccgttca
     9241 ttaccgataa cgcccaacgg cagcactacg aacccggcgg caaataccac ctcttcggcg
     9301 acccgcgcgg cagcgtctcc gaccgcaccg gtcaaatcaa cgtcatccaa gactataccc
     9361 accagatggg caacctgctc atccaacagg cggcaatcca aggcaatctt ggttacaccg
     9421 tccgcttttc cggacacgga cacgaagaac acgccccctt cgacaaccac gccgccgaca
     9481 gcgcaagcaa agaacaaggc aacgttgacg aaggctttac cgtgtaccgg ctcaactggg
     9541 aaggacacga acatcatccc gccgatgcct acgacggccc gaagggcggc aattacccca
     9601 aacctacggg cgcacgagac gaatacacct atcacgtcaa cggcacagcc cgcagtatca
     9661 aactcaatcc gaccgacacc cgcagcatcc ggcaacgcat atccgacaac tacaacaacc
     9721 tcggcagcaa tttctccgac cgcgccgatg aagccaacag aaaaatgttc gagcacaatg
     9781 ccaagctcga ccgctggggc aacagcatgg agtttatcaa cggcgtcgcc gccggcgcgc
     9841 tcaacccctt tatcagcgcg ggcgaagcct tgggcatagg cgacatactg tacggaacgc
     9901 gctatgccat agacaaagcc gcaatgcgca acatcgcccc cttgcccgcc gagggcaaat
     9961 tcgccgtcat cggcggcttg ggcagcgtgg cgggctttga aaaaaatacg cgtgaagccg
    10021 ttgaccggtg gatacaggaa aaccccaatg ccgccgaaac cgtcgaagcc ctggtcaacg
    10081 tcctgccgtt tgccaaagtc aaaaacctga caaaggcggc aaaaccgggg aaggctgcgg
    10141 ttagcgggga tttttctgct gcatacaata caagaacaac tagaaaagtt actacagaaa
    10201 cagaggggtt aaatagaatc agacagaacc agaaaaatag taatatacat gagaaaaatt
    10261 atggaagaga taatcctaat catattaatg ttttatctgg aaattctata caacatatac
    10321 tgtatggaga tgaagcagga ggtgggcatc tttttcctgg caaacctggt aagacaacat
    10381 tcccccaaca ttggtcagcc agtaaaataa ctcatgaaat tagtgatatc gttacatccc
    10441 caaaaacgca atggtatgca cagactggaa caggcggcaa atatattgct aaaggaagac
    10501 cagccaggtg ggtatcatat gaaacgagag atggaattcg tatcagaaca gtttatgaac
    10561 ctgcaacagg aaaagtggta actgcattcc ccgatagaac ctctaatccc aaatataacc
    10621 ctgtaaaata atgagtattt gaaagatgaa aacattagac gaacgaataa aaaatttagg
    10681 aaaatctctt gaagatagaa ttgacgctaa tctaattgat gccgcactag agtacattac
    10741 tttttcagaa cgtttgctag cttttgaaac gctatgtgat tatatagaag atttcaatat
    10801 ccagcttacg gaaaaagaat cccaagaaa
//
LOCUS       DAXIFS010000054        10799 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.054, whole genome shotgun sequence.
ACCESSION   DAXIFS010000054 DAXIFS010000000
VERSION     DAXIFS010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10799
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.054"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            123..305
                     /locus_tag="ACFOCA_000979"
     CDS             123..305
                     /locus_tag="ACFOCA_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987715.1"
                     /translation="MFWYVIGFCSFVVALLSLWVNVGAFGMQEDDTPQSDYEKRLGLG
                     AKLKNKNTPDTEEKQQ"
     gene            complement(367..1368)
                     /locus_tag="ACFOCA_000980"
     CDS             complement(367..1368)
                     /locus_tag="ACFOCA_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFC6987716.1"
                     /translation="MIDGQTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSE
                     FVRITHTVHSRSIWLKYVPEIANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGAN
                     KIDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHIPLTAKMRLGYEDKS
                     RALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVNIPVTANGDVFSLQ
                     DYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELC
                     LTKEANNKYPIARLKQWLGMMKKTFDPAQTLFDRVRTVKDADEVRRILNAFEHEINV"
     gene            complement(1444..5277)
                     /locus_tag="ACFOCA_000981"
     CDS             complement(1444..5277)
                     /locus_tag="ACFOCA_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3683 domain-containing protein"
                     /protein_id="HFC6987717.1"
                     /translation="MTTTTAPQRIREIPYNYTSYTDREIVIRLLGDEAWQILQDLRGQ
                     RKTGRSARMLFEVLGDIWVVVRNPYLVDDLLEHPKRRAALVREMRHRLNEIRKRRDDN
                     RQVDVLVAAAEKAVERFDSSFDETSQKRHQILERLSKITKPHNIMFDGLARVTHVTDA
                     TDWRVEYPFVVVNPDTEAEVAPLVRALIELDLVIIPRGGGTGYTGGAIPLDAMSAVIN
                     TEKLDKHRGVEFVELAGLDGRHPIIRCGAGVVTRRVEETAHQAGLVFAVDPTSADASC
                     VGGNVAMNAGGKKAVLWGTALDNLAYWQMVNPQGEWLRIERVRHNFGKIHDEETAIFD
                     VHTLDSDGLNVVKTERLEIPGHKFRKVGLGKDVTDKFLSGLPGVQKEGTDGIITSVAF
                     VLHKMPKYTRTVCMEFFGTVATATPSIVEIRDFLLAHESVRLAGLEHLDWRYVRAVGY
                     ATKAAGKGRPKMVLLADVVSDDEAAVEAAAEHICELARARDGEGFIAISPEARKTFWL
                     DRSRTAAIAKHTNAFKINEDVVIPLERLGEYSDGIERINIELSIQNKLKLCAALEQYL
                     SGKLPIDKMGTDLPTAELLGERGKHALAHVSAVKARWDWLLANLDTPLADYKARYGAA
                     VHAAPEAKDNESCFTAFRDFRLRVSVKADVMKPLFEIFSGKTDTKIIEGLGKIHAKTV
                     RGRVFVALHMHAGDGNVHTNIPVNSDDAEMLQTAYRSVERIMKIARSLNGVISGEHGI
                     GITKLEFLSDEEMQPFWDYKNQVDPKHTFNRHKLMKGSDLRNAYTPSFELLGAESLIM
                     EKSDLGTIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILGVGLLTEAFLYEEQT
                     RRGVSVKHFEELADIGDHCTVCHRCVKPCPVNIDFGDVTVAVRNYLADSGHKRFAPAA
                     SMGMAFLNATGPKTIKTLRAAMIQTGFPAQNFAYKIGKLLPVGTKKQKAEPKATVGKA
                     PIKEQIIHFINRPLPKNVPAKTPRSLLGIEDDKSIPIIRNPASPEDAEAVFYFPGCGS
                     ERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNNRVAFHRM
                     ANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPGCRIIDIHEYLLEKGVKLNGVKGQQ
                     YLYHDPCHTPIKTMNATQMASSLMGQKVVLSDRCCGESGMFAVKRPDIATQVKFRKQE
                     EIEKNLKELPQGEPVKMLTSCPACLQGLSRYADDNNMPTDYIVIEMAKHILGENWLDE
                     FVKKANNGGVEKVLL"
     gene            5538..5634
                     /gene="ffs"
                     /locus_tag="ACFOCA_000982"
     ncRNA           5538..5634
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACFOCA_000982"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            5801..7492
                     /gene="dld"
                     /locus_tag="ACFOCA_000983"
     CDS             5801..7492
                     /gene="dld"
                     /locus_tag="ACFOCA_000983"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_process: GO:0006089 - lactate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HFC6987718.1"
                     /translation="MSASQLLSRLTQTVGEKYIITDPAKTEQYRQGYRFGEGKALAVV
                     RPGSILEMWKILQACVEADVIVITQAANTGLTGGSTPDGNDYDRDIVIVNTMRMNIIQ
                     TINNNEQVVCLPGSTLNQLELLLKPLGREPHSVIGSSCIGASVLGGVCNNSGGALVQR
                     GPAYTEMALFAQINEEGRLELVNHLGIDLGDTPEEILTNLQGHHYQNKDIKQDAGKGH
                     DHAYCEHVRQVDEPTAARFNADPARHYEASGCAGKLMVFAVRLDTFPQEKQTAVFYIG
                     TNDINELTDIRRAALGEFESLPVSGEYIHRHAFDIADVYGKDTFYVIKKFGTHQLPKL
                     FDLKARVDRFGKKASFLPKHFSDKAMQFVSKYLPDHLPKSMRDYRDKYEHHLILKMGG
                     KGVDEARAFLKEYFAHHSGAFFECNAEETQAAMLHRFAVASAAIRYRAVHDDEVEDLV
                     ALDIALRRDDRDWFEKLPPEIDNKIIHKLYYGHFMCHVFHQDYIIKKGNDCMALEHEM
                     LHLLDQRGAQYPAEHNVGHLYEAKPALKQFYRKLDPTNSFNPGVGKTSKKKNWAE"
     gene            7624..7731
                     /locus_tag="ACFOCA_000984"
                     /pseudo
     CDS             7624..7731
                     /locus_tag="ACFOCA_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            7787..8158
                     /locus_tag="ACFOCA_000985"
     CDS             7787..8158
                     /locus_tag="ACFOCA_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HFC6987719.1"
                     /translation="MKPYKIYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLG
                     LTGAIFVLAVFAQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELP
                     ETVEAANPQAALAQYFGRGGR"
     gene            8313..8861
                     /locus_tag="ACFOCA_000986"
     CDS             8313..8861
                     /locus_tag="ACFOCA_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6987720.1"
                     /translation="MARLTVHTLETAPEAAKARVEAVLQNNGFIPNLIGVLSNAPEAL
                     AFYQEVGKLNAANSLTAGEVEVIQIIAARTNQCGFCVAGHTKLATLKKLLSEQSVKAA
                     RALAAGEFDDAKLGALAAFTQAVMAKKGAVSDDELKAFFDAGYNQQQAVEVVMGVALA
                     TLCNYVNNLGQTEINPELQAYA"
     gene            8996..10087
                     /locus_tag="ACFOCA_000987"
     CDS             8996..10087
                     /locus_tag="ACFOCA_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6987721.1"
                     /translation="MNAQTLIANVAEFVKTKLKPIVDDIDRKGYYPEAFMRELGAIGG
                     FGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNRAVKDK
                     YLADILQGKVLAGTGMSNTVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIW
                     ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPE
                     QFADYIQSIKAGFILLQIGIGAGVIDGSLGIIRLANVVNAEVNRYLDDGYDSLKTRLD
                     GAWAETERLAGLAWSGTPDNLTTLKLREAAAVLTLAAAQSAALHSGAKGYLMRSPAQR
                     RVREAMFVAIVTPAIKHLRKEIAAIEAAK"
     gene            10559..10729
                     /locus_tag="ACFOCA_000988"
     CDS             10559..10729
                     /locus_tag="ACFOCA_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HFC6987722.1"
                     /translation="MAQYMCGPCGWIYDEEHGDPEHGIPPGTKFEDIPDDWKCPECGV
                     GKEDFYLLDFVI"
BASE COUNT         2514 a         2966 c         2908 g         2411 t
ORIGIN      
        1 atttgtactg tcttcggctc gccgccttgt ccttatttaa atttaattca ctatatttgc
       61 ccgtgcgttt gtgataaatt cggcactgta tttgatatga ttttaacaaa tcgggagggg
      121 caatgttttg gtatgtaatc ggcttttgct cctttgtcgt cgcgctgctg tcgctgtggg
      181 tcaatgtcgg cgcattcggt atgcaggaag acgatacccc gcaatcggat tatgaaaaac
      241 gtttgggctt gggtgcgaag ctgaaaaaca aaaatacgcc ggatacggaa gaaaagcaac
      301 aataaagata tgaaatgccg tctgaaagat tttcagacgg catttgcttt gaagcatggg
      361 agacagtcaa acatttatct catgctcaaa tgcgttcagg attcggcgga cttcatccgc
      421 atccttaacc gttcggacgc ggtcaaacag cgtttgcgcc gggtcgaacg tttttttcat
      481 catgcccaac cattgcttaa gacgggcgat cgggtattta ttgtttgcct cttttgtcag
      541 gcacagctcg aaaaactgcc gtatccattt ggaaacttcg gcaaaatccg tgtctttgac
      601 cggcccgccg ttctcgtatt gcttgatttg ccgcgccaaa tcggggcgga tgaccgcgcc
      661 gcgaccgagc atcacgctgt tgcagccgct gattgttttg atgccgatat agtcttgcag
      721 gctgaaaacg tcgccgttgg cggtaacggg aatattgacg ctgtctcgga ttttccttat
      781 ccattcccaa tgcgccggcg gttcgtaacc ctcggctttg gtacgcgcgt gtacggtcag
      841 tccgcatgcg cccccttcgg caatcgcaca ggcgcattcc aaagcccggc ttttgtcttc
      901 gtaaccgagc cgcatttttg cggtgagcgg aatatgtgcg ggcaaacgtc cgcgcagcgt
      961 tttgacgatg tggaatatca gttccggctc ttttaaaagg attgcgccgc ctttgtgttt
     1021 gttgacggtg ggcgcggggc agccgaagtt caaatcgatt ttgttcgcac cgaagcggac
     1081 ggcttccagc gcattcgccg ccatattgtc cgcatcgctg cccaaaagtt ggacggtgca
     1141 gggcgtgccg gaaaacgttt tgtttccgtt ggcgatttcg gggacatatt ttaaccatat
     1201 ggatcgggaa tgcacggtat gggtaatgcg tacaaattcg ctgacgcatt cgtcgtagcc
     1261 gccaatacgc gtcagcaggt cgcgcatcac gtcatcgacc agaccctgca taggggcaag
     1321 gatgattcgg gttttttgtt tgggttcggt tgtttgtccg tcaatcatga tttgggtagg
     1381 tattgggttt aaacaatgcc gtctgaagac ttcggcgttc agacggcatt tccgtgtccg
     1441 ttgttacagc aatacttttt ccacgccgcc gttattggct tttttcacaa actcgtctag
     1501 ccagttttcg ccgaggatgt gtttcgccat ttcgataacg atgtagtcgg tgggcatatt
     1561 gttgtcgtcg gcgtagcggc tcaagccttg cagacacgcc ggacaggagg tcagcatttt
     1621 gacgggttcg ccctgcggca gctctttgag gtttttctca atttcctctt gtttgcggaa
     1681 tttgacttgg gtggcgatgt cggggcgttt gacggcaaac atgccggatt cgccgcagca
     1741 gcggtcgctt aagacgactt tctgccccat caggctgctg gccatttggg tggcgttcat
     1801 ggttttgatg ggcgtgtggc aggggtcgtg gtagaggtat tgctgacctt tcacgccgtt
     1861 cagtttcacg cctttttcga gcaggtattc gtggatgtcg atgatgcggc agccggggaa
     1921 gatttcttcg aagcggtatt tttcgagctg gtcgtagcag gtaccgcaac tgacgacgac
     1981 ggttttgatg tcgaggtagt tgagggtgtt tgccatacgg tggaaagcca cgcggttgtt
     2041 ggtgctcatt tcttcggctt ttgccttatt gccgccggcg tcctgcggat agccgcaaca
     2101 catatagccg ggcggcagga cggtttgcac gccgacgtgc cagagcatgg cttggacggc
     2161 gagtccgatt tggctgaaca ggcgttccga accacagccg ggaaagtaaa acacggcttc
     2221 ggcatcttcc ggagaagccg gattgcggat gatggggatg cttttgtcgt cttcgatgcc
     2281 caataaggag cgcggtgttt tggcaggcac gtttttgggc agcggacggt tgatgaagtg
     2341 gataatttgt tctttaatcg gggctttgcc gacggttgcc ttgggttcgg ctttttgctt
     2401 tttcgtgccg acgggcagca gtttgccgat tttgtaggcg aaattctgcg cggggaagcc
     2461 ggtttgtatc atcgcggcac gtagggtttt aatggttttc gggccggtcg cgtttaggaa
     2521 tgccataccc attgaagctg ccggcgcaaa gcgtttgtgg ccggaatcgg caaggtagtt
     2581 gcggacggct acggttacgt cgccgaagtc gatattgacg gggcagggtt tgacgcagcg
     2641 gtggcacacg gtgcagtggt cgccgatgtc tgccagttct tcaaaatgtt tgacggaaac
     2701 gccgcgacgg gtttgttctt cgtataaaaa ggcttcggtc aagagcccca cgccgaggat
     2761 tttgttgcgc gggctgtaca gcaggttggc acgcggaacg tgggtggagc agacgggttt
     2821 gcatttgccg cagcgcaggc agtctttgac ggaatcggca atcgtgccga ggtctgattt
     2881 ttccataatc agcgattccg cgcccaaaag ctcgaaagac ggcgtatagg cgttgcgcag
     2941 gtccgagcct ttcatcagtt tgtggcggtt gaaggtgtgt ttgggatcga cttggttttt
     3001 gtagtcccaa aacggctgca tttcttcgtc gcttaaaaat tcgagcttgg taatgccgat
     3061 gccgtgttcg ccggaaatca cgccgttaag cgaacgggcg attttcataa tgcgttccac
     3121 agaacggtat gccgtctgaa gcatttcggc atcgtctgaa ttgacgggga tattggtgtg
     3181 gacattgccg tcgccggcgt gcatatgcag ggcgacaaag actctgccgc gcacggtttt
     3241 ggcgtggatt ttgcccaagc cttcgatgat tttggtgtcg gttttgccgc tgaagatttc
     3301 aaaaagcggc ttcattacgt ctgctttgac agacacgcgc aggcggaaat cgcggaatgc
     3361 ggtaaagcag ctttcattgt ctttggcttc gggcgcggcg tggacggctg cgccgtagcg
     3421 ggccttgtag tcggcaagcg gcgtgtcgag attggcgagc aaccagtccc aacgcgcttt
     3481 gacggcggaa acgtgggcca gggcgtgttt gccgcgttcg cccaacagtt cggcggtcgg
     3541 caggtcggtt cccattttgt cgatggggag tttgccggac agatattgct ccaaggcggc
     3601 acagagtttg agtttgtttt gaatggaaag ctcaatgttg atgcgttcga tgccgtctga
     3661 atactcgccg agcctttcga gtgggatgac cacgtcttcg ttgattttaa aggcgttggt
     3721 gtgtttggcg atggcggcgg tgcggctgcg gtcgagccag aaggttttgc gggcttcggg
     3781 agatatggcg ataaagcctt cgccgtcgcg ggcgcgggca agttcgcaga tgtgttcggc
     3841 ggctgcctct acggcggctt cgtcgtctga aaccacgtcc gccagcaaaa ccattttcgg
     3901 ccgtcccttg cccgccgctt tggtggcgta gccgacggcg cggacataac gccagtccaa
     3961 atgttccaaa cctgccagcc gtacgctttc atgggcaagc aaaaagtcgc ggatttcgac
     4021 aatagatggc gtggcggtgg caaccgtgcc gaaaaactcc atacacacgg tgcgcgtgta
     4081 tttcggcatt ttatgcaaca cgaaggcaac gctggtgatg atgccgtccg tgccttcttt
     4141 ctgcacgccg ggcaggccgc tcaagaattt gtcggtaacg tctttgccca aaccgacttt
     4201 gcggaatttg tgaccgggaa tttccaagcg ttcggttttg acgacattga ggccgtctga
     4261 atccagtgtg tgaacgtcaa atattgcggt ttcttcgtcg tggattttgc cgaaattgtg
     4321 gcgcacgcgt tcgatacgca gccattcgcc ttgagggttg accatttgcc agtaggcgag
     4381 gttgtccaac gccgtccccc acagcacggc ttttttaccg cccgcgttca tcgctacatt
     4441 accgcccacg caggacgcgt cggcagaagt cggatcgacg gcgaacacca aacctgcctg
     4501 atgcgcggtt tcttccactc gccgcgtaac cacgcccgcg ccgcaccgga taatcggatg
     4561 tctgccatcc aagcccgcca gttcgacaaa ttccacgccg cgatgtttgt ccagcttttc
     4621 cgtattgatg accgcgctca ttgcgtccaa aggaatcgcg ccgccggtat aacccgtacc
     4681 gccgccgcgc gggataataa ccaagtccaa ctcaattaag gcgcgcacca aaggcgcgac
     4741 ttccgcctcc gtgtcgggat tgacgacgac aaacggatat tcgacgcgcc agtcggttgc
     4801 atcggtaaca tgcgttaccc gcgccagccc gtcgaacata atattgtgcg gcttggtaat
     4861 tttgcttaag cgttccaaaa tttgatggcg tttttggctg gtttcatcaa aactgctatc
     4921 aaaacgctcg actgcctttt ccgctgccgc aaccaataca tccacttgcc gattatcgtc
     4981 gcggcgtttg cggatttcgt tcaaacggtg gcgcatttcc cgcaccagcg cggcgcggcg
     5041 tttcgggtgc tccaacaagt catcgaccag atatggattg cgcacaacta cccaaatatc
     5101 gcccaacact tcaaacagca tccgtgccga acgtccggtt ttacgctgtc cgcgcaagtc
     5161 ttgcagaatc tgccacgctt cgtcgcccag caggcggatg acgatttcgc ggtcggtata
     5221 agaagtatag ttatagggaa tttctcgaat acgctgaggg gcagtagtcg tggtcatggt
     5281 gtgtccgtgc ttggcagttt ttatttgaat gccgtctgaa aattcggttt caggcgagtt
     5341 tgaaaaggcg ataatgtagt tcaatttttg atatttttca atgccgaaac aggaaatacc
     5401 cttatagaaa caaaataacg ctttgagaaa ttgttgacaa tattatcaaa tataaatttt
     5461 aggtggtgtt tccggcgtat gaccgtatca aaacggttga gtttttcaga aaacccgtta
     5521 taatgccgtt tctctgaggc gggtctcccc gcatggcaaa tcggaacacc gggtcagggg
     5581 cggaagccag cagcccactc cggtgcgcca gtgccggggg tttggcccgc cgccctattt
     5641 gaaacgccgg agctttgatg ttccggcgtt cccgtatcgc accgttgccg tctgaaagcc
     5701 gttcagacgg cattttcttt actttgccat aacgtataac tacaatgtga aaacaattcc
     5761 aatgtgcaat gcacctgccg acaattttaa ggaaactgcc atgagcgcat cacaattact
     5821 gtcaagactg acccaaaccg taggcgaaaa atacatcatt accgaccccg cgaaaaccga
     5881 acaataccgc caaggttacc gcttcggcga gggtaaggcg ttggcggtgg ttcgccccgg
     5941 aagcattctg gaaatgtgga aaattctgca ggcgtgcgtc gaagcagacg tgattgtgat
     6001 tacgcaggcg gcgaataccg gactgaccgg cggttcgacc cccgacggca acgattacga
     6061 ccgcgacatc gtgattgtga acaccatgcg gatgaacatc atccaaacca tcaacaacaa
     6121 cgaacaagtc gtctgcctgc ccggctcgac cctgaaccag cttgaattgc tgctgaaacc
     6181 cttgggacgc gaaccgcatt cggttatcgg ctcttcctgc atcggtgcgt ccgtcttggg
     6241 cggcgtgtgc aacaactccg gcggcgcatt ggtacagcgc ggcccggcct acaccgaaat
     6301 ggcactgttc gcccaaatca acgaagaagg caggttggaa ctggtcaacc acttgggcat
     6361 agacttgggc gacacgcccg aagaaatcct gaccaacctg caaggtcatc attatcaaaa
     6421 caaagacatc aaacaagacg cgggcaaagg acacgaccac gcctattgcg aacacgtccg
     6481 ccaagtggac gaaccgaccg ccgcgcgttt caatgccgac cccgcccgcc attacgaagc
     6541 ctcgggctgc gcgggcaaac tgatggtttt tgccgtccgt ttggacacct tcccgcaaga
     6601 aaaacaaacc gccgtgttct acatcggcac gaacgacatc aacgagctga ccgacatccg
     6661 ccgcgccgcc ttgggcgaat ttgaaagcct gcccgtttcc ggcgaataca tccaccgcca
     6721 cgctttcgat attgccgacg tgtacggcaa agacacgttt tacgtcatca aaaaattcgg
     6781 tacgcaccaa ctgccgaaat tatttgactt gaaggcgcgc gtggacaggt tcggcaaaaa
     6841 agccagcttc ctgcccaaac atttttccga caaggccatg cagttcgtca gcaaatacct
     6901 gcccgaccac ctgcccaaat ccatgcgcga ttaccgcgac aaatacgaac accacctgat
     6961 tctgaaaatg ggcgggaaag gcgtggatga ggcgcgcgcg ttcttaaaag aatattttgc
     7021 acaccacagc ggcgcgtttt tcgagtgcaa cgccgaagaa acccaagccg cgatgctgca
     7081 ccgtttcgcc gtcgcctccg ccgccatccg ctaccgcgcc gtgcatgatg acgaagtgga
     7141 agacttggtc gcgcttgaca tcgccctgcg ccgcgacgac cgcgactggt ttgaaaaact
     7201 gccgcccgaa atcgacaata aaatcatcca caaactctac tacggacatt tcatgtgcca
     7261 cgttttccat caggattaca tcatcaaaaa aggcaacgac tgcatggcgt tggaacacga
     7321 aatgctgcat cttttagacc aacgcggcgc gcaatatccc gccgaacaca acgtcggtca
     7381 tttgtatgaa gccaaacccg cgctcaaaca gttttaccgc aaacttgacc cgaccaacag
     7441 cttcaacccg ggcgtaggca aaaccagcaa aaagaaaaac tgggcggaat aagcgtgtcc
     7501 gctttgaagg caggcaatgc cgtctgaagg caaaacgccg ttcagacggc attgtcgggt
     7561 ttgaagttcc ccgtcgggta atcgctttca aaccgtatgc cgacacacgg gcgcgcccct
     7621 cccaaatata gtggattaaa tttaaatcag gacaaggcaa cgaagccgca gacagtacag
     7681 atagtacggc aaggcgaggt aacgccgtac tggtttaaat ttaatccact ataaagtctg
     7741 atcctacctt cccaaagggc agggtttcaa ccgaaaagga aacacgatga aaccatacaa
     7801 aatctacacc catcccgccc tgccgcccca agccgtcaaa caaggctggt cgtggccggg
     7861 ccttttgttc ggcacgctgt gggcgtgttt caaaagaatg tggggtttgg ggctggggct
     7921 gacgggcgcg atattcgtgc tggcggtgtt tgcccaactg gtttacggcg acacgcccgc
     7981 cacagactcg gcgtttaacg tattgggctt ggcggtttcc gtctggttcg gcgcaaaggg
     8041 caacagcctt tatgcacgcc accttttatc gcgcggctat accgaattgc ccgaaacggt
     8101 tgaggcagcc aatccccaag ccgcattggc gcaatatttc gggcgcgggg gccgataagc
     8161 gcgttttctt ttccatcatg ccgtctgaaa aatgttcaga cggcatttct tataaccttt
     8221 tgtttgcagc acataaccaa tcagtctttc ctattccgtt ccgaaatgca taccatgcgc
     8281 ccgtacccaa tatttgcgaa caaggaaaga aaatggcacg tttaaccgta cacaccctcg
     8341 aaaccgcccc cgaagccgcc aaagcgcgcg tcgaggcggt acttcaaaac aacggcttta
     8401 tccccaacct tatcggcgta ttatcaaacg cccccgaagc cttggcgttt taccaagaag
     8461 tcggcaagct caacgccgcc aacagcctga ccgctggcga agtcgaagtc atccagatca
     8521 tcgccgcccg taccaaccaa tgcggttttt gcgtggcagg gcacaccaaa ctcgcaaccc
     8581 tgaaaaaact cctgtccgaa caatccgtca aagccgcgcg cgctttggca gcaggcgaat
     8641 ttgacgatgc caaactcggc gcgctcgccg ccttcaccca agccgtaatg gcgaaaaaag
     8701 gcgcggtatc cgatgacgaa ctcaaagcat ttttcgacgc gggctacaac cagcagcagg
     8761 cagttgaagt cgtgatgggc gtagccttgg caactttgtg caactacgtc aacaacctcg
     8821 gacaaaccga aatcaacccc gaattgcagg cttacgcctg atacggcaaa ccgcccgaat
     8881 atcgggcggt ttttcaaaaa caccccctca aacaaaaaca agccgcctaa gcggcaggga
     8941 agcagccgcg catcaggcgc gcccccgatt tccccgcaaa ccttaaggaa caaagatgaa
     9001 cgcccaaacc ctgattgcca acgttgccga attcgtcaaa accaagctca aacccatagt
     9061 ggacgacatc gaccgcaaag gatactaccc cgaagcattt atgcgcgaac tcggcgcaat
     9121 cggtggattc ggcgcagtcg gtacagaagc cgaaggcggc aacggcttgg gtttggcaac
     9181 gcaaatcgcc gtattgcgcg aaatcggcaa agaatgcggc gcaacctctt tcagtgcgtg
     9241 gtgtcaggcg gcttgcgcgt ggtatctgca ccaaacgccc aaccgggccg tcaaagacaa
     9301 ataccttgcc gacatcctgc aaggcaaagt attggcgggt acgggcatgt ccaataccgt
     9361 caaacacctt gccgacatcg aaaaacacaa cctccaagcc gagcgcgtgg agggcggcta
     9421 cacagtcaac ggcgcgctgc cgtgggtgtc caacatcggc gaagaccaca tttgggcgaa
     9481 taccgcccaa atcggcggcg gctacgtcat gttcatcaca ggcggacaat gggaaggcgt
     9541 aagcctgcaa aactgccccg aattttgcgc cctcgaaggc acgcgcacct tcagcctgaa
     9601 cttcaaagac gtatttatcc ccgacgaaga catcatcgcc gcgcccgaac agtttgccga
     9661 ctacatccaa agcatcaaag caggctttat cctcctgcaa atcggcatcg gcgcgggcgt
     9721 gatagacggc agcctcggca tcatccgcct cgccaacgtc gtcaacgccg aagtcaaccg
     9781 ctatctcgac gacggctacg acagcctcaa aacaaggctg gacggcgcgt gggcagaaac
     9841 cgaacggctc gccggattgg cttggagcgg cacgcccgac aaccttacca ccctcaagct
     9901 gcgcgaagcc gccgccgtac tgacacttgc cgccgcccaa tccgccgccc tgcattccgg
     9961 cgcaaaaggc tacctgatgc ggagtcccgc ccaaaggcgc gtccgcgaag caatgtttgt
    10021 cgccatcgta actcccgcga tcaaacacct ccgcaaagaa atagcggcaa tcgaagccgc
    10081 aaaataaaca ggcggaaaaa accgaaaccc ccatcgcgtc attcccgcga aagcgggaat
    10141 ccagccccca acgcaacagg aatccatcgg aaaaaacaga aacccccaaa ccgtcattcc
    10201 cgcaaaagcg ggaatccagc cccctaacgc aacaggaatc catcgaaaaa accgaaacct
    10261 ccaaaccgtc attcccacgg aagtgggaat ccagtaaccg aaaaaccaca ggaatctatc
    10321 gaaaaaaaac ccaaccccca aaaaaaccgg gcggatacct caccatcctc ccaaaccctg
    10381 atttatagcg gatgaacaaa aatcagggca agacggcgaa accgcagaca gtacaaatag
    10441 tacgaaaccg attcacttgg tgcttgagca ccttagagaa tcgttctctt tgagctaagg
    10501 cgaggcaacg ccgtactggt ttttgttcat ccgctataca aaaaacaagg aaacacaaat
    10561 ggcgcaatat atgtgcggcc cctgcggctg gatttacgat gaagaacacg gcgaccccga
    10621 acacggcatc ccccctggga caaagtttga agacatcccc gacgactgga aatgccccga
    10681 atgcggcgtg ggcaaagaag atttctacct gttggatttc gtgatatagc ggcagccgca
    10741 cccttaggga aaaccccgtc atccggcgtt ccgcctgcgg cggcagggaa cgccgtttt
//
LOCUS       DAXIFS010000055        10790 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.055, whole genome shotgun sequence.
ACCESSION   DAXIFS010000055 DAXIFS010000000
VERSION     DAXIFS010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10790
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.055"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            154..1038
                     /locus_tag="ACFOCA_000989"
     CDS             154..1038
                     /locus_tag="ACFOCA_000989"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HFC6987723.1"
                     /translation="MSSGNIHIHSMTGFANAAAECGSKRINLDLRAVNHRFLDIQIRM
                     PDDLRYLESGIREKISSHIARGKVECKIQIQDAENGSQSLELNRDLVGQLAEINKDLR
                     KHHDLAKLGVADILRFPGVLASQRENTEELAKSITELTEKALKDFTAARKREGKKLGE
                     HLLQRLEAMEEIIDALSELFPTLLETHKEKIRARLVEAVGSIDNDRLQQEFALFIQKS
                     DIDEEFSRLRTHIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIATECTQAS
                     VELKVLIEQMREQVQNIE"
     gene            complement(1122..1637)
                     /locus_tag="ACFOCA_000990"
     CDS             complement(1122..1637)
                     /locus_tag="ACFOCA_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6987724.1"
                     /translation="MMILKTAPLKRRFAAMLYEMLLVGAATCLAALFAGIAAIFLNPV
                     SIAVSALVTSILIMGSWWLYFRANWHGQGQTLAMRTWKIGLCDLNGIQPSLYLLRLRF
                     IWACIFIVFIPMLAYAGLRHFLGIPPKGAAGAALIWLILPWGFALLNPDRQFLYDFLA
                     GTRLVAVKGKP"
     gene            complement(1713..2132)
                     /locus_tag="ACFOCA_000991"
     CDS             complement(1713..2132)
                     /locus_tag="ACFOCA_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987725.1"
                     /translation="MDNKTKLRLGGLILLTTAVLSLIIVLIVDSWPLAILLAAIIVAA
                     AAGGFVWTSRRQQRQFIERLKKFDIDPEKGRINEANLRRMYHSGGQHQKDAITLICLS
                     QKCSVDEAHAMFKKRPTRQEINQMVAKQSRGQKRPHR"
     gene            complement(2253..3251)
                     /gene="holA"
                     /locus_tag="ACFOCA_000992"
     CDS             complement(2253..3251)
                     /gene="holA"
                     /locus_tag="ACFOCA_000992"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFC6987726.1"
                     /translation="MAAHIGRIDTDAPLKPLYVIHGEEELLRIEALDALRAAAKKQGY
                     LNREVYTADNAFDWNELLQTAGSAGLFADLKLLELHIPNGKPSKTGGEALQDFAARLP
                     EDTVTLVLLPKLEKTQLQSKWFAALAAKGEVWEAKPVGAAALPQWIRGRLDKIGLGIG
                     ADALALFAERVEGNLLAARQEIDKLALLYPKGHTVNIDEAQTAVANVARFDAFQLAGA
                     WMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDVRTLIRLAAALKQGQSIQSVRNSLR
                     LWGDKQTLAPLAVKRISVVRLLDALKTCAQIDRIIKGAEEGDAWTVFKRLVVSLAE"
     gene            complement(3253..3732)
                     /gene="lptE"
                     /locus_tag="ACFOCA_000993"
     CDS             complement(3253..3732)
                     /gene="lptE"
                     /locus_tag="ACFOCA_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFC6987727.1"
                     /translation="MNKLFLTAAVLMLGACGFHLKGADGISPPLTYRSWHIEGGQALQ
                     FPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVL
                     KRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE"
     gene            complement(3784..4563)
                     /gene="pgeF"
                     /locus_tag="ACFOCA_000994"
     CDS             complement(3784..4563)
                     /gene="pgeF"
                     /locus_tag="ACFOCA_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HFC6987728.1"
                     /translation="MKTITETLNLAPKGKNFLTADWPAPANVKTLITTRNGGVSQGAY
                     QSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTIVVNAAEALDGTPDADAS
                     VDDTGKVACAVMTADCLPVLFCDRAGTTVAAAHAGWRGLAGGVLQNTIAAMKVPPVEM
                     MAYLGPAISADAFEVGQDVFDAFCTPMPEAAAAFEGIGGGKFLADLYALARLILKREG
                     VGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDGNAV"
     gene            5170..6117
                     /locus_tag="ACFOCA_000995"
     CDS             5170..6117
                     /locus_tag="ACFOCA_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6987729.1"
                     /translation="MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLL
                     GIIMFGMGLTLKPSDFDILFKHPKAVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGV
                     ILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
                     GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI
                     MESGLLIFAVVALHNGIGYLLGFFAAKWTGLPYDAQKTLAIEVGMQNSGLAAALAAAH
                     FAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP"
     gene            complement(6269..7393)
                     /gene="rluD"
                     /locus_tag="ACFOCA_000996"
     CDS             complement(6269..7393)
                     /gene="rluD"
                     /locus_tag="ACFOCA_000996"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HFC6987730.1"
                     /translation="MQNTSFDNESDYSDDSDFASASETENRIGLTVPLELAGGRLDAV
                     LAKLLPDYSRSRLTLWIKEGAVIVNDKPSQPKDKMIGGEQIRVTVRPSEENLAFVPEP
                     MALDIVYEDDTVIVVNKPAGLVVHPAAGNWRGTLLNGLLAHCPELSQVPRAGIVHRLD
                     KETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRL
                     KMAVVKFGGKPAVTHVKVLERYLTHSYIECSLETGRTHQIRVHMREANHPLAGDPVYG
                     NPRHPCSDPVKEAVKSLGSRQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLRL
                     EAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE"
     gene            7392..8195
                     /locus_tag="ACFOCA_000997"
     CDS             7392..8195
                     /locus_tag="ACFOCA_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFC6987731.1"
                     /translation="MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQD
                     ELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLH
                     PQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
                     KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESL
                     AILELAYQKLGKPQLAADTRRVLETNFPKSPFLTHAWQPDDMPWWRYWH"
     gene            complement(8253..10472)
                     /locus_tag="ACFOCA_000998"
     CDS             complement(8253..10472)
                     /locus_tag="ACFOCA_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HFC6987732.1"
                     /translation="MFRRWFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFA
                     FAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVPLTVEVADMPRSDGRRVQFAAKA
                     VDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
                     GTVGADRVLLHGGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRP
                     ELWQAFRPLGLTHLVSISGLHVTMVAVMFAWLAKRLLACSPRLPARPRAWVLAAGCAG
                     ALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALAAVLLFDPSAVLGVG
                     TWLSFGLVAALIWACSGRLHEGKRQTAVRGQWAASVLSLVLLGYLFASLPLISPLVNA
                     VAIPWFSWVLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVAAAPLP
                     LLVLAVCAALLLLLPRGLGLRPWAVLLLAGFVFYRSPGVPENEVAVTVWDAGQGLSVS
                     VQTANHHLLFDTGTAAAAQMGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQAVGKIPN
                     GGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLMPSERKNIDDNGKSCVLRVVAGGAAL
                     LVTGDLDTKGEESLVGKYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYA
                     NAYKHPTEAVQNRIRAHGIKLLRTDLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE"
BASE COUNT         2571 a         3224 c         2706 g         2289 t
ORIGIN      
        1 gttaatccac tatacatttc ccttccttgc agcaacaaaa gcgcgtgatt ccaatctgcc
       61 gctgcaaaat cttcaatttt tcacacccga aaacgcttgc cgccatacag atgtgatata
      121 ttgattccat tttaacgggc ttcggagaac gacatgagca gcggaaatat ccacatccac
      181 agcatgaccg gatttgccaa cgcggcggca gagtgcggca gcaaacgcat caatctcgac
      241 ctgcgtgcgg tcaaccaccg ttttctagat attcaaatca ggatgcccga cgatttgcgc
      301 tatttggaaa gcggtatccg cgagaaaatt tcatcccata tcgcacgcgg caaagtcgaa
      361 tgcaaaatcc aaattcaaga tgcggaaaac ggcagtcagt ccttggaact gaatcgcgac
      421 ttggtcggac agcttgccga aatcaacaaa gacctccgca agcatcacga tttggcaaaa
      481 ctgggcgttg ccgacatcct gcgtttcccc ggcgtattgg caagccaaag ggaaaatacg
      541 gaagaattgg caaaaagcat taccgaactg accgaaaaag cgttaaaaga ctttactgcc
      601 gcacgcaagc gggaaggtaa gaaattaggc gagcacctgc tgcaacgcct tgaggctatg
      661 gaagaaatca tagatgcatt aagcgaactc tttcctaccc tgttggaaac acataaagaa
      721 aaaatccgcg cccgcctcgt cgaagcggtc ggcagcatcg acaacgaccg cctgcaacag
      781 gaatttgccc tctttatcca aaaatccgac atcgacgaag agttcagccg cctacgcacc
      841 cacattgccg aagtgcgccg tatcgttacc gaacacaaag gcagcagcgg caaacggctg
      901 gacttcctga tgcaggaatt aaaccgcgaa gccaacactt tgggcagcaa atccatcgct
      961 accgaatgca cccaagcctc ggtcgagctg aaagtcctga tcgaacagat gcgcgaacaa
     1021 gtgcagaata tcgaataatc ggtttccccg ataagcaaat gccgtctgaa agccctttca
     1081 gacggcattt tttcagtttg aaacctttgc ggtataaagg cttaaggctt tcctttgacc
     1141 gccaccaatc ttgttcctgc aagaaaatca tacagaaact gccggtcggg attcagcagt
     1201 gcgaaccccc acggtaaaat cagccaaatc aatgccgcgc cggccgcgcc cttgggcgga
     1261 atgccgagga agtggcgcaa tccggcataa gcaagcatag gaatgaagac gatgaatatg
     1321 cacgcccaaa taaagcgcag gcgcaacagg tacaaagacg gctgtatgcc gttaaggtcg
     1381 cacaagccga ttttccatgt cctcatcgcc aaggtctgcc cctgaccgtg ccagttggcg
     1441 cgaaaataaa gccaccatga tcccattatc aggatactcg ttaccaatgc agaaaccgcg
     1501 atagaaacgg gattcagaaa aatggcggca ataccggcaa acaatgctgc caaacaggtt
     1561 gccgcaccga ccagcagcat ctcatacagc atggcggcaa agcggcgttt gagcggggcg
     1621 gttttcagta tcatcatctt ttcaatcaga atatgccgtc tgaaacgcca acaggcttca
     1681 gacggcattt atgcaaagat gccttgcggc ggttaacggt gcggacgttt ctgaccgcgc
     1741 gactgttttg ccaccatttg attgatttcc tgacgtgtcg ggcgtttttt gaacatagcg
     1801 tgcgcctcgt ccaccgaaca tttttgcgac aggcagatca gggtaatcgc atctttctgg
     1861 tgttgtccgc cgctgtggta catacggcgc aggtttgcct cgttgattct gcctttttcg
     1921 ggatcgatgt cgaatttttt caggcgttcg ataaactggc gttgctgtcg gcgggatgtc
     1981 caaacaaaac cgcccgcagc ggcggcgacg atgatggcgg caagcaggat ggcaagcggc
     2041 caggaatcga caatcaatac gataatgagg cttaaaacgg cggtggtcag taaaatcagg
     2101 ccgcccaagc gcagtttggt cttattgtcc atagggttaa tgttccttta ttgaggtggt
     2161 cgtgccgtct gaaatgtttt cggacggatt ggtgaatact tttcaggatt aacggtattt
     2221 tacagtattt tcggattttg gggattaccg ctttattccg ccagcgacac gacaagccgt
     2281 ttgaataccg tccatgcgtc gccctcttcc gcgcctttga tgattcggtc gatttgggca
     2341 caggttttga gcgcgtcaag caggcggacg acggaaatcc gcttgactgc aagcggtgcg
     2401 agcgtctgct tgtcgcccca aagcctaagg ctgttgcgga cggattggat gctctgcccc
     2461 tgcttcaggg cggcagcaag ccggatcagc gtccgcacgt cttcggcaac cgcccacagc
     2521 aacagcaccg gttcttcgcc ctcttcccgc aatccgtcca aaagcctgca tacgcgcagg
     2581 acatcgccct tcatccacgc gcctgccagt tggaacgcgt cgaagcgggc gacgttggca
     2641 acggcggttt gcgcctcatc gatattgacg gtatgccctt tcggatacag cagcgcgagc
     2701 ttgtcgattt cctgacgtgc cgccaacaga ttgccttcca cgcgctcggc aaacagtgcc
     2761 aatgcgtctg ccccgatacc caaaccgatt ttgtccagcc gtccgcgtat ccattggggc
     2821 aaagccgccg cgccgaccgg tttggcttcc cacacttccc cctttgccgc caatgcggca
     2881 aaccatttgg actggagctg ggttttctcc agtttgggca gtaaaaccag cgttaccgta
     2941 tcttccggca ggcgggcggc aaaatcctgc aacgcctcgc cgccggtttt gctgggcttg
     3001 ccgttaggga tatgcagttc caacagcttc aaatcggcaa acagacccgc actgcctgcg
     3061 gtttgcagca gctcgttcca atcgaaagca ttgtctgccg tataaacttc ccgattaagg
     3121 taaccttgtt tcttcgccgc cgccctcaat gcgtccaatg cctcgatacg caacagttct
     3181 tcctcgccgt ggatgacgta caggggtttc aaaggcgcgt ccgtatcaat gcgtccgata
     3241 tgtgccgcca cgtcattccg ccttcagaaa ggtcaggcgg cggacaatct gttcggcggc
     3301 atcctgccgc atttccgccc acaatgccgc ttcctcttcc tgtttgccca agatctcgtt
     3361 gtcggcataa gcaaggacgc ggcggacgga cacggtcatc ggtttgccga ccggctcgcc
     3421 gcgtttcaat acctgcgctt caaccgtcaa tatcaaaaga tattcgttga tgactgccgc
     3481 acgggtaacg gtgtaggttt ccttgttttg ggaaacgctg tctatacgca gggtcatctg
     3541 cgcgccggca gcatcgtcca ccctgcccga agcctgatac agcgcggttt ccaaaggaaa
     3601 ctgcaatgcc tgtccgcctt cgatgtgcca gctccggtag gtcagcggcg gagaaatgcc
     3661 gtctgcacct ttcaggtgga aaccgcacgc gcccagcatc agcactgcgg cagtaagaaa
     3721 cagtttgttc atggcttgcc tttctcaaaa gcacaaagtc ggtagattat atcagcggcg
     3781 tgttcagacg gcattgccgt ccagccaaat caggctcgcc atacgccctg tcgctccgtc
     3841 gcggcggtag gaaaagaaag tatcccgttc caaaaccgta caatgcgtgc cgccgtacac
     3901 gccgcccacg ccttcgcgct tcagaatcag gcgggcgagc gcgtaaaggt cggcaaggaa
     3961 tttgccgccg cctatgcctt caaatgcggc ggcggcttcg ggcatgggcg tgcagaacgc
     4021 atcaaacacg tcctgtccga cttcaaacgc atccgcactg atggcggggc cgagatacgc
     4081 catcatttcg acaggcggaa ccttcatcgc tgcaatggtg ttttgcaata cgccgcccgc
     4141 caaaccgcgc cagcccgcgt gtgcggcggc aaccgtcgta cccgccctgt cgcaaaacaa
     4201 aacaggcagg cagtctgcgg tcatcacggc acaggcaacc ttgcccgtgt cgtccacgga
     4261 agcgtccgca tcgggcgtgc cgtccaatgc ttcggcagca ttgacgacaa tggtgctgtg
     4321 gatttgattg aggtaggcaa cgggcaatcc gacctgctgt tgcacgattt cgcggttgcg
     4381 gcgcacggct tcgggattgt cgccgacgtg cgtaccgagg ttcaaactct gatacgcacc
     4441 ttggctcacg ccgccgttgc gcgtggtaat cagggttttc acattggcgg gcgcgggcca
     4501 atcggcggtc aggaagtttt tgcctttcgg ggcaagattt agggtttctg tgatggtttt
     4561 cattggatat tggaataggt gtgtggcgga aagggttgat taactgcctt cggggcaaat
     4621 ggatgtttgt tttttcgtca ttcccgcaca ggcgggaatt cggagattcg ggattgtttt
     4681 caaacgttcg ggttcggatt tttgcaggtg cgggaatgat gcccttatat accttctccg
     4741 agctttatat agtggattaa caaaaaccag tacggcattg tctcgcctta gctcaaagag
     4801 aacgattctc taaggtgctg aagcaccaag tgaatcggtt ccgtactatt tgtactgtct
     4861 acggcttcgt cgccttgtcc tgatttttgt taatccacta tatgtttcaa caggggatgg
     4921 cacatcaagc accgcactgc gtgttgcccg aacgagacta ccctccgatt agattctatc
     4981 gctataaaca gacgggtttc aaccgaaaag gaatggggat aaagtccatt tctgacacct
     5041 ctcgggcgat gccgtctgaa aaccaatctc cactttcaga cggcattgtt taggcacggt
     5101 cattttgcaa attaaggtta aggcgtgtat gcttgccttc ccttaaaaac aaacacgcaa
     5161 cgcattatta tgaatatcct cagtaaaatc agcagcttta tcggaaaaac attttccctc
     5221 tgggccgcgc tctttgccgc cgccgctttt ttcgcgcccg acaccttcaa atgggcgggg
     5281 ccttatattc cttggctgtt gggcattatt atgttcggta tgggtttgac gctcaaacct
     5341 tccgacttcg atattttgtt caaacatccc aaagccgtca tcatcggcgt aatcgcacaa
     5401 ttcgccatta tgccggcaac cgcctggctg ctgtccaaac tgttgaacct gcctgccgaa
     5461 atcgcggtcg gcgtgatttt ggtcggctgc tgcccgggcg gtacggcttc caatgtgatg
     5521 acctatctgg cgcgtggcaa tgtggctttg tcggttgccg ttacgtctgt ttccaccctg
     5581 atttccccat tgctgactcc cgccatcttc ctgatgcttg ccggtgaaat gctggaaatc
     5641 caagcggccg gtatgttgat gtccatcgtc aaaatggttt tgctccccat tgttttgggt
     5701 ttgattgtcc ataaggtttt gggcagtaaa accgaaaagc tgaccgatgc gctaccgctg
     5761 gtttccgttg ccgccatcgt gctgattatc ggcgcggttg tcggggcaag caaaggcaag
     5821 attatggaaa gcggcctgct gatttttgcc gttgtcgcac tccacaacgg catcggctac
     5881 ctgctcggct tctttgccgc caaatggacc ggcctgcctt atgatgcaca aaaaacgctg
     5941 gccatcgaag tcggtatgca aaactcgggg ctggccgccg cgcttgccgc cgcacacttt
     6001 gccgctgcgc cggtcgttgc cgttccgggc gcattgttca gcgtgtggca caatatctcc
     6061 ggctcgctgc tggcaactta ttgggcggcc aaagccggta aacataaaaa accctaaacg
     6121 cctttcatca taatgccgtc tgaacggggc aaacgaaacc ggcggtttct gcccgacccc
     6181 ttcagacgcc tttgtttgaa atcggcgggg acgattatcc ggctgctccg attcggctac
     6241 ctgcgttcgc cccgcctttc aagccacctc actccctcac ataaaccact tcgacatcgt
     6301 agtcgtcttc gttccaatcg tcatcgtcgt ccgcgccgaa tttgtcctgc cattcctctt
     6361 cattgctcaa agacgaatcc aaaccggctt caagacggag gacggacaac aaatgatata
     6421 tgtcgtccgg aatcggtgcc tcaaacgaaa cggtttcgcc gctttccgga tgggtgaaac
     6481 tcaagcggta ggcgtgcaat gcctgacgcg agcccaaact tttaacggct tctttcaccg
     6541 ggtcgctgca cggatggcgc gggttgccgt acacgggatc gccggcaagc ggatggttgg
     6601 cctcgcgcat atggacgcgg atttggtgcg tcctgcccgt ttcgagcgag cattcgatat
     6661 agctgtgggt aagatagcgt tccaacactt tgacgtgggt aacggctggt ttgccgccga
     6721 atttgacgac tgccattttc aggcggttgt gcggatcgcg tccgatttgg gtttcgattt
     6781 taccgtcgaa ggggacgatg ccgttggcga cggcgcggta gatgcgtttg accgtgcgct
     6841 cttgaagctg cctcacgagg gaattttgcg ccggcagggt tttggcaacc accatcagcc
     6901 cgctggtttc tttgtccaaa cggtgtacga tgcctgcacg cggtacttgg ctcaattcgg
     6961 gacagtgcgc caacaggccg ttgagcagcg tccccctcca gttgcctgcc gccggatgca
     7021 ccaccagtcc ggccggtttg ttgacgacaa tgacggtatc gtcttcgtaa acaatatcca
     7081 aagccatagg ctctggaaca aacgccagat tttcctcact cggacggacg gttacacgga
     7141 tttgctcacc gcctatcatt ttgtctttgg gttgcgaagg tttatcgttt acaataaccg
     7201 cgccctcttt aatccataat gtcaggcggc tgcgcgaata gtcgggcaga agtttcgcca
     7261 acaccgcatc caaccgcccg ccggcaagct cgagcggaac ggtcagaccg atacggtttt
     7321 cagtttcgga agctgacgca aagtctgaat cgtcgctata atcggattca ttatcaaagg
     7381 aagtattctg catgaaaaaa attcttttaa cggtttcatt aggtttggca ctgagtgcct
     7441 gtgccactca aggtacggtc gataaagatg cccagattac ccaagattgg agtgtggaga
     7501 agctctatgc cgaagcccag gacgaattga acagcagcaa ttatacgcgg gctgtcaagt
     7561 tatacgaaat cttggaatcg cgcttcccca ccagccgcca tgcccggcag tcgcaactgg
     7621 ataccgcata cgcctattat aaagacgatg aaaaagacaa agctctggcg gcaatcgaac
     7681 gcttccgccg ccttcacccg caacacccga atatggatta cgcgctatac ctgcgcggtt
     7741 tggtactgtt caacgaagat cagtctttct tgaacaagct ggcctcgcaa gactggtccg
     7801 accgcgaccc gaaagccaac cgcgaagcgt accaggcgtt tgcggaactc gtccaacgct
     7861 tccccaacag caaatacgcc gccgatgcga ccgcacgtat ggtcaaactg gtcgatgcac
     7921 tgggcggcaa tgaaatgtcg gtggcgcgct actacatgaa acgcggtgca tatatcgccg
     7981 ccgccaaccg cgcccaaaaa atcatcggca gctaccagaa tacgcgttat gtcgaagaat
     8041 cgctcgccat attggaactt gcctaccaaa aactcggcaa accacagctt gccgccgata
     8101 cgcgccgcgt gttggaaacc aacttcccga aaagcccgtt tttgacgcac gcttggcagc
     8161 ccgacgatat gccctggtgg cgttactggc attaagccca tcttcgtaat gccgtctgaa
     8221 gccgtttcag acggcatttt atgtttcaaa cctcattcaa acggtttttt ctgccaatag
     8281 aatttatacc ctctcaaacg ttgagccttc acgccgccgc gccccaagcc gaattgcagc
     8341 gcgcccgaca aatcggtacg caacaatttg atgccgtgtg cacggatacg gttttgcacc
     8401 gcttcggtcg gatgtttgta ggcgttggca taaccgcttg aagcaacggc atattcgggc
     8461 gagacggcat tgaggaacac gcccgacgag gacgtattgc tgccgtgatg tcccaaaacc
     8521 aaaacctggc tgtacaggtt gcctccatac ttgccgacca ggctttcctc gcccttcgta
     8581 tccaaatcgc ccgttaccag cagtgccgca ccgcccgcca caacacgcaa aacacaactt
     8641 ttcccattat catcgatgtt tttgcgttca gacggcatca aaaactcaaa atccacgccg
     8701 tcccattgcc aacgctgttc cgcacaatgc cgcgccccct cataaaattc cggctgcccg
     8761 gcataaatcc cgccgttcgg tatcttgccg actgcctgaa aaccgccgtc gtggtcgctg
     8821 tcgtgatgcg acagaaccag cttgtccaaa cggcggacac ccgccgcatt caaactcggc
     8881 acaatcccca tctgcgccgc cgctgccgtt ccggtgtcaa acaaaagatg atgatttgcc
     8941 gtctgaaccg acaccgacaa accctgcccc gcatcccaaa ccgtaaccgc aacctcattt
     9001 tccggcacgc cgggtgaacg gtaaaacaca aaccctgcca acagcaacac cgcccacgga
     9061 cgcaaaccca agccgcgcgg cagcagcaac agcaaagcgg cacacaccgc caacaccaac
     9121 agcggcaaag gtgcggcggc aacggcaaac tcgggcgaca catcggcaag ccacaccaaa
     9181 aaccgcaaag tatattccgc caaaaatgcc cccaactgtt gcaaaggcgc aaacggcacg
     9241 accgaaccca gcaacgccag cggcgtcaat acccaagaaa accacggaat cgccaccgca
     9301 ttgaccaaag ggctgattaa aggcagcgaa gcaaacagat aaccgagcaa aaccagcgac
     9361 aacaccgaag ccgcccactg cccgcgcacg gcggtttgcc gtttcccttc gtgcaaacgc
     9421 cccgaacacg cccatatcag ggccgccacc aaaccgaaag acagccaagt ccccacaccc
     9481 aagaccgccg acgggtcgaa cagcagcacc gccgccaacg cctgccacca cgtcgcccac
     9541 gccgacaatc ttcccctgcg ccaagcccac gcaaacgccg ccaacatcaa aacgctgcgc
     9601 tgcgtcggca cggaaaaacc ggcaagcagc gcgtaaaaca gcgcgcctgc acaccccgcc
     9661 gccaaaaccc acgcacgcgg ccgggcagga aggcgcgggg aacaggcaag cagccgcttc
     9721 gccagccacg caaacattac cgccaccatc gtaacgtgca aacccgaaat actgaccaaa
     9781 tgcgtcagcc ccaacggccg gaacgcctgc cacaattcgg ggcgcaatgc cgactgttcg
     9841 cccacgctca acgcgcgcat cagcccgatg ccgtctgaaa gcccgccgtc cgcatccgcc
     9901 tgctgccaat tacggctgat gcggctgcgc caaaccgcaa tcccccaacc gcttccgcca
     9961 tgcagcaaaa ccctgtccgc accgaccgtc cccgcgccgc ctatcccgtt ggataatgcc
    10021 cacgcctcac ggttcaaacc gcgcaggttc aattcgccga cgacggggtg cacacgtgcc
    10081 gttatccgcc atctgctccc gaccgcccat tcgcgccgtt tgtagtccga cagcagcaaa
    10141 tcaaacgtcc gaccaccgct gtccacagcc tttgccgcaa actgcacgcg ccgcccgtcc
    10201 gacctcggca tatccgccac ttccaccgtc aacggcacac ctgaaaccgc ctccgcccgc
    10261 cattgcgaag acagtgccgc ttccgttctg aatacgccgt aagccgcgcc cgccaacacg
    10321 cacagcatca gaccggcaaa cgcaaaacgc cttgcaaaca cagcaaaaac cgcaaaagcc
    10381 gccagccaaa acagccaatg cggcacgacc ggcagcgcaa acgaagccgc cgcgccgaca
    10441 acccaacacg gcaaaaacca acgacggaac acgtctcccc accccagata tttcaaaaat
    10501 aaacggataa taaagcaaat ccgaaaaacc gtcataacaa gatttgaaaa tgatatagtg
    10561 gtttaaattt aaatcaggac aaggcgacga agccgcagac agtacaagca gtacgacaag
    10621 gcgaggcaac gctgtactgg tttttgttaa accactataa gaatgcaaac gaaaagcctc
    10681 agtattatcc tagacaacgg caaactttcc atcgtcattc ccgcacaagc gggaatccaa
    10741 acttgtccgc acggaaactt atcggataaa acggtttctt agattccacg
//
LOCUS       DAXIFS010000056        10622 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.056, whole genome shotgun sequence.
ACCESSION   DAXIFS010000056 DAXIFS010000000
VERSION     DAXIFS010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10622
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.056"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..1110
                     /locus_tag="ACFOCA_000999"
     CDS             205..1110
                     /locus_tag="ACFOCA_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6987733.1"
                     /translation="MGKGGDIVVGNGKKYAAPLLVLGCVVFGLGSLIVRSVPVGSYAI
                     AFWRLLISVFVFWFLARFFRQKFPKNRKTVRYALTAGVFLAFDLALWHESIHAVGPGI
                     STLLNSLQIFFLSAIGVFFFGERLSGLKKAGLISAVAGVAMIAGAEFGYNGNAVWGFV
                     SGLVSGLMLALSMVFVRKTHEIETVALFPSMMILSLGGAVSLVVPALLMDGGALYPTT
                     WKDAGLVLVYGVVMQCFAWAMVAYAIPLLSLSLTGLLLLSEPVAALFIDYFGLGKPIE
                     GVQWAGVALTLSAIYLGSLKQQSEP"
     gene            1156..1305
                     /locus_tag="ACFOCA_001000"
     CDS             1156..1305
                     /locus_tag="ACFOCA_001000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987734.1"
                     /translation="MNWQAVKTGKTKHASNGAERKMPSEALSDGIGAGRIKKAASAGM
                     AMQLK"
     gene            complement(1524..2543)
                     /gene="lepB"
                     /locus_tag="ACFOCA_001001"
     CDS             complement(1524..2543)
                     /gene="lepB"
                     /locus_tag="ACFOCA_001001"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFC6987735.1"
                     /translation="MNTMLMSGAAAALLAGIILYFKSDKKRQENGEWSSGLEYAYILT
                     AVGVFAALSLFMSFTAVFLIFVVLCGTAWGVYKYRLKTHPEISESSHFGDYFGSFFPT
                     VLVLFLIRSFIAEPFQIPSSSMRPGLIKGDFILVGKFSYGLRVPVLNNIFIPTGKIER
                     GDVVVFNYPLQPEMTYIKRIVGIPGDVVEYRNKVLTVNGKPASDIPDGTYRYPDDTDP
                     SEIHNTDMFHSGLDGKSFNILKKEGQPAVSLPVLGKYTSDIMSENGYSIEQSGLEHCQ
                     YADDGSGFVCKVPEGRYFAMGDNRDNSADSRYWGFVDDKLVVGKAMFILMNFGDFGRA
                     GTAIR"
     gene            complement(2686..4479)
                     /gene="lepA"
                     /locus_tag="ACFOCA_001002"
     CDS             complement(2686..4479)
                     /gene="lepA"
                     /locus_tag="ACFOCA_001002"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFC6987736.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLADRFIQYCGGLDLREMSTQVLDSM
                     DIEKERGITIKAQTAALNYKARDGQVYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTAIDLGVEVVPVLNKIDLPAADPERVEQEIEDIIGIDAVGAVQ
                     CSAKSGIGVEDVLEEIVAKIPAPTGDENAPLQAVIVDSWFDNYVGVVMLIRVKNGTIK
                     LKDKVRFMSTKAETQVEQLGVFTPKSVQKQELKAGEVGFLITGVKELGQAKVGDTVTL
                     VANPATEPLPGFQEVQSQVFAGLYPVESHDYEALRDALEKLQLNDASLKFEPEVSQAL
                     GFGFRCGFLGLLHLEIVQERLEREFDMDLITTAPTVVYEVVLKSGEKIEVENPSKLPD
                     IGSIETILEPIITATILVPQEYVGNVMTLCNQKRGVQVNMQYMGRQVMLTYDLPMNEV
                     VMDFFDKLKSTSRGYASLDYHFKEFQPSDLIKLDIMVNGEKVDALSLIVHRQSAVHRG
                     RELASKMRELIPRQMFDIAVQAAIGSQIIARENVKALRKNVLAKCYGGDITRKKKLLE
                     KQKAGKRRMKQVGNVEIPQSAFLAILQVSDK"
     gene            complement(4622..5323)
                     /locus_tag="ACFOCA_001003"
     CDS             complement(4622..5323)
                     /locus_tag="ACFOCA_001003"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HFC6987737.1"
                     /translation="MSLKTVAVIGAMEQEIELLREMMENVKAVSFGKFTAYEGELAGK
                     RMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHD
                     VDVTAFGYVWGQVPQLPAVFVSDDLLVGKAKRAARTFEGAAVEQGLIVSGDRFVHSSE
                     GVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTA
                     AASSAKMVAEIVKSL"
     gene            5491..6621
                     /locus_tag="ACFOCA_001004"
     CDS             5491..6621
                     /locus_tag="ACFOCA_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6987738.1"
                     /translation="MFTDENMTAKEELFAWLRHMNQNKGSDLFVTTHFPPAMKLDGKI
                     TRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECNFAISLPDTSRFRVNAMIQRGAT
                     ALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
                     SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDR
                     ETMDYAIAFAETGHLCMATLHANSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQ
                     RLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKSTTLGMQTFDQHLYQL
                     YEKGDISLQDALKNADSAHDLRLAVQLRSRRAQSSGPDLELL"
     gene            6656..7633
                     /locus_tag="ACFOCA_001005"
     CDS             6656..7633
                     /locus_tag="ACFOCA_001005"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFC6987739.1"
                     /translation="MIYPWHNEQWRQIAEHWERRPNAWLFAGKKGIGKTEFARFAAQA
                     LLCENPSPDHRACGACASCHFFEQGSHPDFYEITPLSDESENGRKLLQIKIDAVREII
                     DNVYLTSVRGGLRVVLIHPAESMNIQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI
                     KSRCRKMVLPAPSHEEALAYLRERGVAEPEERLAFHSGAPLFDEADGVRALRIKLLDI
                     LAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ
                     TASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKENG"
     gene            7637..7987
                     /locus_tag="ACFOCA_001006"
     CDS             7637..7987
                     /locus_tag="ACFOCA_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HFC6987740.1"
                     /translation="MSDGQNIPAKMMSLQLKDMNLLYSSYMPFLEHGGLFVQTDDVFS
                     IGDDILLAVEILNFPKLFLPTKVAWINPARTSSKPKGVGLAFTKHENCLKVKDQIEVE
                     LGSTIGGSRPTFTM"
     gene            7992..8771
                     /locus_tag="ACFOCA_001007"
     CDS             7992..8771
                     /locus_tag="ACFOCA_001007"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6987741.1"
                     /translation="MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESF
                     SEVFAIAEAHEHIYCTIGVHPDSKEAEEFSVAEMVEAAAHPKVVGIGETGLDYYWCKG
                     DLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
                     RAAMDFGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPA
                     FVRHTAEHIAKLRDQTLEQVAAYTTENFYRLFQKVPDMRAV"
     gene            8797..9012
                     /locus_tag="ACFOCA_001008"
     CDS             8797..9012
                     /locus_tag="ACFOCA_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HFC6987742.1"
                     /translation="MKAIHPYACPRCCRLPANTFRTGMANSASKFCIAKGGRREVKKD
                     ESGGGYALCHLPDSRIVEEWEYFRSQH"
     gene            9113..9424
                     /gene="grxD"
                     /locus_tag="ACFOCA_001009"
     CDS             9113..9424
                     /gene="grxD"
                     /locus_tag="ACFOCA_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HFC6987743.1"
                     /translation="MASIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAG
                     CTDYVTVNVLENPEVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMYEAGELQELLK
                     A"
     gene            9530..10156
                     /gene="upp"
                     /locus_tag="ACFOCA_001010"
     CDS             9530..10156
                     /gene="upp"
                     /locus_tag="ACFOCA_001010"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFC6987744.1"
                     /translation="MNVNVINHPLVRHKLTLMREADCSTYKFRTLAIELARLMAYEAS
                     RDFEIEKYLIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQ
                     RDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLV
                     AAPEGVKAVNDAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR"
     gene            10179..10499
                     /locus_tag="ACFOCA_001011"
     CDS             10179..10499
                     /locus_tag="ACFOCA_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HFC6987745.1"
                     /translation="MNFQDYLATFPSIDHLGGLDVQDADGKTVHHIPAVQGKLGSLKL
                     YNALAERFDGKLDKEAAEQGLIWFAEHVADARAHPGKHPNIDLLEKVVQSGETLLLKP
                     LAAQ"
BASE COUNT         2498 a         2702 c         2834 g         2588 t
ORIGIN      
        1 ttgagctaag gcgaggcaac gctgtactgg tttttgttaa tccactatat tcgggtttta
       61 tccggcagga cggttttttg ccccaacgga aaatagtcgg cctgcccgta aaatcagccg
      121 tttgtccggg tgcagccggg gctttgggct tcagacggca tattttcgga atggcggcat
      181 tcttgccgtc ggcgcggcag ccgtatgggg aagggagggg atattgtggt cggtaacggc
      241 aaaaaatatg ccgcaccatt gctggtgctg ggttgcgtgg tgttcggtct gggcagtctg
      301 attgtcagat ccgtccccgt cggttcgtat gcaatcgcat tttggcggtt gctgatttcg
      361 gtgttcgtat tttggttttt agcacggttt ttcaggcaaa aattcccaaa aaacaggaaa
      421 accgtccgat atgccctgac ggcgggcgtg tttctcgctt tcgatttggc gttgtggcac
      481 gaaagcatac acgcggtcgg gccgggtatt tccaccctgc tcaacagcct gcaaatcttt
      541 ttcttgtcgg caatcggtgt tttctttttc ggcgagcgtt tgagcgggct gaaaaaggca
      601 ggcttaatat cggcagttgc cggcgtggcg atgattgccg gtgcggaatt cggctacaac
      661 ggtaatgcgg tttggggatt cgtcagcggt ttggtatcgg gactgatgct cgccctgtcg
      721 atggtgttcg tccgcaaaac ccatgaaatc gagacggtgg cgcttttccc ttcaatgatg
      781 attttgagtt tgggcggcgc ggtatcgctg gttgttccgg cattgctgat ggatggcggc
      841 gcgctttatc cgacgacttg gaaagatgcg ggtttggtgc ttgtgtacgg cgtggtgatg
      901 cagtgcttcg cgtgggcgat ggttgcctat gcgattccgc tgctttcgct gtcgctgacg
      961 gggctgctgc ttttgtccga accggttgcc gccctgttca tcgattattt cgggttgggc
     1021 aaaccgattg aaggcgtgca gtgggcaggg gtggcgctga cgctttcggc aatttacctc
     1081 ggttcgctga aacagcagtc cgagccttga ctccgtccgg catcagattt tctgccgtgg
     1141 caaacctgcg tacgattgaa ctggcaggca gtcaaaaccg gcaagaccaa acacgccagc
     1201 aacggcgcgg agcggaaaat gccgtctgaa gccctttcag acggcatcgg ggcgggcaga
     1261 atcaaaaaag ccgcctccgc tggaatggca atgcaactaa aataatgtcc gtatttccat
     1321 atgccgccca caccgtcagt cggacgaaat gccctttatt caatgggatg ggtttccaca
     1381 caaacggaaa tatagtggat taaatttaat ccactatatt atccccgagg ctgccggcag
     1441 ggaaacaagg cgtttgatga taaaaatgcc gtctgaaaca gggttcggat ggcatttttg
     1501 atgttccggc gtaattttcc ggcctaacgg attgccgtac cggccctgcc gaaatcgccg
     1561 aagttcatca aaatgaacat tgccttgccg acaaccagct tgtcatccac aaatccccag
     1621 tagcgcgaat cggcactgtt gtcgcggttg tcgcccatag cgaaatagcg tccttcggga
     1681 actttgcaca cgaaaccgct gccgtcgtcg gcatattggc agtgttccaa accgctttgc
     1741 tctatggaat atccgttttc agacataata tcggaggtat atttgcccaa tacgggcagg
     1801 gaaacggcag gctgtccttc ttttttcaga atattgaagg atttgccgtc caaaccgctg
     1861 tggaacatat ccgtattgtg gatttcggat gggtcggtgt cgtcgggata acggtatgtg
     1921 ccgtcaggaa tatcggaagc aggttttccg tttaccgtca aaactttatt ccgatattcg
     1981 accacatcgc ccggaatgcc gacaatacgc ttgatgtagg tcatctccgg ttgcaaagga
     2041 taattaaaaa cgaccacatc gccccgttcg attttgcctg taggaataaa tatattgttt
     2101 aaaacgggta cgcgcaggcc gtaggaaaat ttgccgacca aaatgaaatc gcccttaatc
     2161 aggcccgggc gcatcgagct ggacgggatt tggaacggtt cggcaataaa cgaccggatg
     2221 aggaacaata ccaaaacggt agggaagaaa ctgccgaaat aatcgccgaa gtggctgctt
     2281 tccgagattt cgggatgagt cttcaggcgg tatttgtata ccccccaagc cgtaccgcac
     2341 aatacaacga aaatcaggaa aacggcggta aagctcataa acagggacaa agcggcaaac
     2401 acgccgaccg ccgtcaggat ataggcgtat tccagaccgg aactccattc accgttttcc
     2461 tgccgctttt tgtcgctttt gaaataaagg atgatgccgg caagcagcgc ggcagccgcg
     2521 cccgacatta gcattgtgtt cattgttgtt ccttaatgct taaaaacccg cctgtccgtg
     2581 caaccgtttt aaggcggcaa attgcaaaat ttgtttgcgg gcgtgtgccc ctgaaatcag
     2641 ggcggtttga ggggtgttcc cgacgcgccg ccctgtgtgc cagagttatt tgtcgctcac
     2701 ctgcaaaatc gccaagaacg cgctttgcgg aatttccaca ttgcccactt gtttcatacg
     2761 gcgtttacct gccttttgtt tttcaagcag ttttttctta cgcgtaatat cgccgccgta
     2821 acatttcgcc aaaacgtttt tacgcagggc tttgacgttt tcgcgggcga taatctggct
     2881 gccgatggcg gcttggacgg cgatgtcgaa catttggcgc ggaatcagct cgcgcatttt
     2941 tgatgccagc tcgcggcctc ggtgaaccgc gctttgacgg tgcacaatca ggcttaatgc
     3001 atcgactttt tcgccgttga ccataatatc cagcttaatc aaatcagacg gttggaactc
     3061 tttgaaatgg tagtccaacg aagcataacc gcgcgaagtg gatttgagtt tgtcgaagaa
     3121 gtccatgacg acttcgttca tgggcaaatc gtaagtcagc atgacttggc ggcccatgta
     3181 ctgcatattg acctgaacgc cgcgcttttg gttacacaaa gtcatgacgt tgccgacgta
     3241 ttcctgcggc acaaggatgg tcgcggtaat aatcggctcg agtatggttt cgatgctgcc
     3301 gatgtcgggc agtttggacg ggttttcaac ttcgattttt tcgccgcttt tcaacacgac
     3361 ttcgtaaacc accgtcggcg cggtggtaat caaatccata tcgaactcgc gctccaagcg
     3421 ttcctgcacg atttccaagt gcaacagacc caagaagccg caacggaagc cgaagcccaa
     3481 tgcctgggaa acttcaggct cgaatttcaa cgaagcgtcg ttaagctgca atttttccaa
     3541 agcgtcgcgc aaggcttcgt agtcgtggct ttccacggga taaagtccgg cgaatacttg
     3601 gctttgtact tcttggaagc cgggcagcgg ctcagtggca gggttggcaa ccagtgtaac
     3661 cgtatcgccg actttcgcct gacccaattc ttttacgccg gtaatcaaaa agcccacttc
     3721 gccggctttg agttcttgtt tttgaaccga tttcggtgtg aatacgccca actgctcaac
     3781 ctgcgtttcc gccttggtgc tcataaagcg cactttgtct ttcagtttga tggtgccgtt
     3841 tttcactcga atcagcatga ccacgccgac gtagttgtca aaccacgaat cgacaatcac
     3901 ggcttgcagc ggcgcgtttt catcgccggt cggcgcagga attttggcaa cgatttcttc
     3961 caaaacgtct tccacgccga tgccgctttt ggcggaacac tgcaccgcgc cgaccgcatc
     4021 gatgccgatg atgtcttcaa tttcctgctc cacgcgttcg gggtcggcgg ctggcaggtc
     4081 gattttgttc aaaacaggca caacctccac gcccaaatca atcgcggtgt aacagttcgc
     4141 tacggtttgc gcttccacgc cctgcgacgc gtcaacgacc aaaagcgcgc cttcgcaagc
     4201 cgacagcgaa cgggaaactt cgtaagagaa gtcgacgtgt cccggcgtgt caatcaaatt
     4261 aagctgatac acctgcccgt cgcgcgcttt atagttgagc gcggcggttt gcgctttgat
     4321 ggtaatgccg cgctcttttt cgatgtccat ggaatcgagt acctgcgtac tcatttcgcg
     4381 caaatccaaa ccgccgcaat attggatgaa gcggtcggca agcgtcgatt tgccgtggtc
     4441 gatgtgggca atgatggaga aatttcggat atttttcatt agagttgttt tgaatgtcgg
     4501 acagtgggtt tgggaaatgc cgtctgaaca aacggcgttg cgtccgaata tcgggcgcaa
     4561 cgtggaaata gcccgatatt ctaacggaaa accgctgttt tggcatgatt tgataaaggt
     4621 tttataaaga tttgacgatt tctgccacca tttttgcaga acttgccgcc gccgttttca
     4681 aaaattcgtc aaagctgatg tctgcttttt catctgccga atcggaaacc gcgcggatga
     4741 tgacgaaagg cgtttccaac tgatgacagg tttgggcgat tgccgccgct tccatttcta
     4801 ccgccttaac ttcggggaag tgcttgcgga tttccgccac gccttcgctg ctgtggacga
     4861 agcggtcgcc gctgacaatc agaccttgtt ctaccgccgc gccttcaaac gtccgcgccg
     4921 cccgttttgc cttgccgacc aagaggtcgt ctgaaacgaa tacggcgggc agttgcggca
     4981 cttgtcccca aacatagccg aatgcggtta catcgacatc gtggtgtgcg gtttccgtgc
     5041 caatcaccac gtcgccgact ttcaaaccct tgcccaaacc gcccgcgctg ccggtgttga
     5101 tgacgcagtc cgctgcgaat tcacggataa tccaagccgt tgcaaccgcc gcgttgacct
     5161 tgccgatgcc gctcaatgca agcaccatgc gttttcccgc taattcgcct tcataggcgg
     5221 taaacttgcc gaaagagacg gctttgacat tttccatcat ctcgcgcaaa agctcgattt
     5281 cttgttccat tgcgccgata acggctactg ttttcaaaga catattgctg acctgttgtg
     5341 aatttcggat agaatgcctg attatacacg ctaacacggc aggattgagt gggggcggtt
     5401 tgtccgtgcc gtctgaaacg gtttcagacg gcacggcggg tttttggtag aatgggaagg
     5461 tacagattgt ttgaagatta ggggacgagg atgtttaccg atgaaaatat gaccgcaaag
     5521 gaagaactgt tcgcatggct gcgccatatg aaccaaaaca aaggttccga cctgttcgtg
     5581 acgactcatt tcccgcccgc aatgaagctg gacggcaaaa tcacccgcat cacggacgaa
     5641 ccgctgacgg cggaaaaatg tatggaaatc gccttttcga ttatgagtgc gaagcaggcg
     5701 gaagaatttt catcgaccaa cgagtgcaac ttcgccatca gtctgccgga caccagccgc
     5761 ttccgcgtca atgcgatgat acagcgcggc gcgacagcgt tggtattccg tgcgattacc
     5821 agcaagattc ccaagtttga aagcctgaac ctgccgccgg tcttgaagga tgtcgcgctg
     5881 aaaaaacgcg ggctggttat ttttgtcggc ggcaccggct cgggcaaatc gacttcgctt
     5941 gcctcgctta tcgactaccg caatgaaaat tcgttcggac acatcatcac catcgaagac
     6001 ccgatcgagt ttgtccacga acacaaaaac tgcatcatca cccagcgcga ggtcggcgtg
     6061 gatacggaaa actggatggc ggcgttgaaa aacacgctgc gtcaggcgcc ggatgtgatt
     6121 ctgatcggcg aaatccgcga ccgcgaaacg atggactacg ccattgcctt tgccgaaacg
     6181 gggcatttgt gtatggcgac gctgcacgcc aacagcacca atcaggcact cgaccgcatc
     6241 atcaactttt tccccgagga gcggcgcgaa caattgctga cggatttgtc gctcaacctt
     6301 caggcgttta tttcgcaacg cctcgttccg cgagacggcg gcaagggcag ggtggcggca
     6361 gtcgaggtgc tgctcaattc gcccctgatt tcggagttga ttcacaacgg caacatccat
     6421 gaaatcaaag aagtgatgaa aaaatccact accctgggta tgcagacctt cgaccaacac
     6481 ctttaccaat tgtatgaaaa aggcgatatt tccttgcagg atgccttgaa aaatgccgat
     6541 tcggcgcatg atttgcgttt ggctgttcag ttgagaagcc gccgcgcgca aagttccgga
     6601 ccggatttgg aattgctctg atgaagggta tggatttccg gacggatggt ttgaaatgat
     6661 ttatccgtgg cataatgagc aatggcggca gattgcggaa cattgggagc gccgtcccaa
     6721 tgcttggctg tttgccggca aaaaaggcat agggaaaacc gagtttgccc gctttgcggc
     6781 gcaagcatta ttgtgtgaaa acccaagtcc ggatcaccgg gcttgcgggg cttgtgcttc
     6841 ttgtcatttt tttgaacaag gcagtcatcc ggatttttac gaaatcactc ccttgtcgga
     6901 cgaatccgaa aacgggcgca aactgttgca gatcaaaatc gatgccgtca gggaaatcat
     6961 cgataatgtg tacctgactt cggtacgggg cggtttgcgc gtggttctga ttcatcctgc
     7021 ggaaagtatg aatatccagg ccgccaacag tttgttgaaa gtgttggaag agcctccgcc
     7081 acaagtggtc tttttgctgg tcagccacgc ggcggacaag gttttaccga ccattaaaag
     7141 ccgctgccgg aaaatggttt tgcccgcgcc ttcccatgaa gaggcattgg catatctgcg
     7201 tgaaaggggt gtggcggaac ctgaggaacg tctggctttc cattccggag cgccgctgtt
     7261 tgatgaggcg gacggtgtcc gtgcgttgcg gattaaactg ttggatattt tggcagaacc
     7321 gaggttgttg aagattttgg attacgccgc gcttttcgat aaggaaaaac ttccgctcgc
     7381 cgtatttgtc gggtggatgc agaaatggct ggtcgatttg ggattgtgcc tgcaacacat
     7441 gaaacccgtc tattatcccg cttatgaaga caggctgctt cagacggcat ccggtttccg
     7501 cccgcgcaat gtatttgcgg cggaggatat gctcaaacag cttgccccct acgggtttca
     7561 tactttaaat gtcaaaatgc agatcgagca tctgctcatc aattatttgg aattgaagaa
     7621 agagaacggg tgaattatgt cagacggaca aaatattccg gcaaaaatga tgtcgttgca
     7681 gctgaaagac atgaatctgc tgtacagctc ctatatgccg tttttggaac atggcggcct
     7741 gtttgtgcag accgacgacg tattttccat cggggacgat attctgcttg ccgtagaaat
     7801 cctcaacttc cccaaactgt tcctgccaac caaggtcgct tggattaatc ctgcgcgtac
     7861 ttcctccaaa cccaaagggg ttgggctggc attcacaaaa cacgaaaact gcctgaaagt
     7921 caaagaccag atcgaagtcg aactgggcag cacaatcggc ggcagcagac ctacgtttac
     7981 catgtaacgc catgcatatc atcgattcgc actgccacct caattttgaa ggtttgaaag
     8041 aacgcctgcc cgaagttttg tccaacatgg aagcaaacgg cgtggggcag gcgctcgcca
     8101 tcagcgtcag tagggaaagc ttctccgaag tctttgccat cgccgaagcg cacgaacaca
     8161 tctattgcac cataggcgta catcccgaca gtaaggaagc cgaagaattt tccgtcgcgg
     8221 aaatggtcga agccgccgcc catccgaaag tggtcggcat tggcgagacg ggtttggatt
     8281 attactggtg caaaggcgat ttgtcctggc agcacaaacg ctttgcagac cacatcgaag
     8341 cagccaatca aaccggactg cccgttatcg tccatacgcg tgatgcggcg gcggatacct
     8401 tgtctatcct gaaagaatgc cgggttaatt cgggcgttat ccactgtttt tccgaagaca
     8461 tcggttttgc ccgtgcagca atggattttg ggctttatat ttctttctcg ggaatcgtta
     8521 cctttaaaaa cgcacccttg gttcaggagg cggcaaaata cgttccggac gaccgcattt
     8581 tggtggaaac cgatgcgccg ttcctcgccc ccgttcccaa acgcggcagg cagaacgaac
     8641 cggcttttgt gcgccatacc gccgaacata tcgccaaatt gcgggaccaa acattggaac
     8701 aggttgcggc atatacgacg gaaaactttt accggctgtt tcaaaaagta cccgatatgc
     8761 gggccgtctg accctgtgcc gacgataagg aaaaccatga aggcaattca tccgtatgca
     8821 tgtccgcgct gctgccggct gcctgccaac acgtttcgga caggcatggc aaattccgct
     8881 tccaaattct gcattgccaa aggcggcaga cgggaagtaa aaaaagacga aagcggcggc
     8941 ggatatgccc tgtgccattt gccggacagt aggattgtcg aggagtggga atatttccgt
     9001 tcacaacatt gatactgcgc gatatacggc aaatattgtg ggaagtttcc gcttttgcgt
     9061 ataatgcgcc ctacctgaca aattttgtca actttatcaa aaggaataag cgatggcttc
     9121 catccacgac caaattaaag aagtagtaac gacacaccgc gtcgtattgt ttatgaaagg
     9181 tacgaagcag tttccgcaat gcggtttctc ttcccgcgcc gtgcaaatcc tgaacgcggc
     9241 gggctgcacc gattacgtta ccgtcaacgt attggaaaat cccgaagtac gccaaggcat
     9301 taaggaatac agcgactggc cgaccatccc ccaactttat gtgaacggcg agtttgtcgg
     9361 cggttcggac atcctgatgg aaatgtatga ggcaggcgag ctgcaagagc tgctgaaagc
     9421 ctgatggatt cggcaatgcc gtctgaacgt gtttcagacg gcattttctt ttccggcaaa
     9481 tcaaaaaaaa gtataatggc gcgtctcaaa atcacactgg aacaccgcga tgaacgttaa
     9541 tgttatcaac catccgctcg tccgccacaa attaaccctg atgagggagg cggattgcag
     9601 cacctacaaa ttccggacgc ttgccatcga gctggcgcgc ctgatggcat acgaggcaag
     9661 ccgtgatttt gaaatcgaaa aataccttat cgacggatgg tgcggtcaga ttgaaggcga
     9721 tcgcatcaag ggcaaaacat tgaccgtcgt tcccatcctg cgtgcaggtt tgggtatgct
     9781 tgacggcgta ctcgacctga ttccgactgc caaaatcagc gtagtcggac tgcagcgcga
     9841 cgaggaaacg ctgaaacccg tttcctactt cgagaaattc gtggacagca tggacgaacg
     9901 tcctgccctg attatcgacc cgatgctggc gacgggaggt tcgatggttg ccaccatcga
     9961 ccttttgaaa gccaagggct gcaaaaacat caaggcactg gtgctggttg ccgcgcccga
    10021 gggtgtgaag gcggtcaacg acgcgcatcc cgacgttacg atttacaccg ccgcgctcga
    10081 cagccacttg aacgagaacg gctacatcat ccccggcttg ggcgatgcgg gcgacaagat
    10141 tttcggcacg cgctaactga ctgattttcg gagttgatat gaattttcaa gactatctcg
    10201 ccacatttcc ttcaatcgac catctgggcg gtttggacgt tcaggatgcc gacggcaaaa
    10261 cggttcacca cattcccgcc gttcagggta agctcggttc gctcaagctg tacaatgctt
    10321 tggcagaacg ttttgacgga aaattggata aagaagcggc agaacagggt ttgatatggt
    10381 ttgccgaaca cgttgccgac gcgcgcgccc atcccggcaa gcatcccaat atcgacctgc
    10441 ttgaaaaagt tgtgcaaagc ggcgaaacct tgctgctcaa gccgcttgcc gcgcaataat
    10501 tttcgaccat gccgtctgaa atccgtttca gacggcattt tatcggaaag aagaccgtaa
    10561 aacgggcatt ttcttttcta tttcaggata cgggcaatga tgtttcaaca cacaggacga
    10621 ta
//
LOCUS       DAXIFS010000057        10599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.057, whole genome shotgun sequence.
ACCESSION   DAXIFS010000057 DAXIFS010000000
VERSION     DAXIFS010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.057"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(148..2010)
                     /gene="hscA"
                     /locus_tag="ACFOCA_001012"
     CDS             complement(148..2010)
                     /gene="hscA"
                     /locus_tag="ACFOCA_001012"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HFC6987746.1"
                     /translation="MALLQISEPGMSAAPHRHRLAAGIDLGTTNSLVATVRSGSAACL
                     PDAEGRVTLPSVVRYLENGGIEVGKTALSAQKTDPLNTVSSAKRLIGRTLADLHQNTH
                     YLPYRFGDNQRVIELHTRQGVKTPVEVSAEILKTLKSRAEETLGGDLVGVVITVPAYF
                     DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNASEGTFVVYDLGGGTFDVSVL
                     QLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQNGLSQLNEQDSQLLLSLVRAAKEQ
                     LTTQTEARIQATLSDGMAIDTSISRAEFHNLTQHLVMKTLEPVTQALKDAGVGKNEVK
                     GVIMVGGSTRMLHVQQAVATFFGQTPLNNLNPDEVVALGAAIQANVLAGNKTDGEWLL
                     LDVTPLSLGLETYGGLAEKIIPRNSTIPTARAQDFTTFKDGQTAMTIHVVQGERELVS
                     DCRSLAKFTLRGIPPMAAGAARIRVTFQIDADGLLSVSAQEQSTGVQAQIEVKPSYGL
                     DDGAITRMLKDSMDNAAEDMAARARAEAVVEAESLTDAVNAALELDSDLLDAKELQQI
                     RQGIADLQGRLKDGKAEDIRSAVAKLSRSTDNFAAKRMNRNIQRALTGQSVDNI"
     gene            2181..3053
                     /gene="hpnD"
                     /locus_tag="ACFOCA_001013"
     CDS             2181..3053
                     /gene="hpnD"
                     /locus_tag="ACFOCA_001013"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HFC6987747.1"
                     /translation="MKGLDYCRQKAEESRSSFLSGFRFLTQEKRDAVTVLYAFCRELD
                     DVVDECSNPDVAQATLNWWRGDLDKVFGGAMPEHPVNQALRQVKETFKLPKYELEALI
                     DGMQMDLLRVRYGSFEELKLYCRRVAGVVGCLIARILGFSDDQTLEYADKMGLALQLT
                     NIIRDVGEDARRGRIYLPMEEMRRFDVPASVILQCSPTGNFAELMAFQIKRARETYRE
                     AVSLLPDADKKAQKVGLVMAAVYYALLNEIDRDGAQNVLKYKIALPSPRKKRIALKTW
                     LFGFKPRPGTPERA"
     gene            3132..4445
                     /gene="hpnE"
                     /locus_tag="ACFOCA_001014"
     CDS             3132..4445
                     /gene="hpnE"
                     /locus_tag="ACFOCA_001014"
                     /EC_number="1.17.8.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxysqualene dehydroxylase HpnE"
                     /protein_id="HFC6987748.1"
                     /translation="MMNTPHPRPKIAVIGAGWAGLSAAVTLARHADVTLFEAGRQAGG
                     RARTLAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQ
                     FRALPLPAPLHILGGVLLARRAPTAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRN
                     VPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIV
                     AEPALAELQRLGADIRLETRVCRLNPLPDGKVLVNGEAFDAAVPATAPYHAAALLPEG
                     TPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEV
                     SAVISVSDRVGAFANRAWADKAHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDL
                     SWLHRHRIFPAGDYLHPDYPATLEAAVQSGFASAEACLQSLNDAV"
     gene            4529..5248
                     /locus_tag="ACFOCA_001015"
     CDS             4529..5248
                     /locus_tag="ACFOCA_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6987749.1"
                     /translation="MATLTDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE
                     KVYDAIVEAGYPEPFAICFDLISAEEKEFEHFAATIAEATQGKLDGIVHCAGYFYALS
                     PLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF
                     GASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVL
                     PAFVWWASAESKGRSGEIVYL"
     gene            5413..6084
                     /locus_tag="ACFOCA_001016"
     CDS             5413..6084
                     /locus_tag="ACFOCA_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFC6987750.1"
                     /translation="MKTVSTAVVLAAAAVSLTGCATESSRSLEVEKVASYNTQYHGVR
                     TPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLNALKQE
                     SGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVN
                     TSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGA
                     WQPNR"
     gene            6094..6462
                     /locus_tag="ACFOCA_001017"
     CDS             6094..6462
                     /locus_tag="ACFOCA_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4810 domain-containing protein"
                     /protein_id="HFC6987751.1"
                     /translation="MNPKTLSRLSLCAAVLALTACGDNGQKSLYYYGGYPDTVYEGLK
                     NDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRL
                     FPESGVFMDFLMKTGKGGKR"
     gene            6459..7106
                     /locus_tag="ACFOCA_001018"
     CDS             6459..7106
                     /locus_tag="ACFOCA_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF799 domain-containing protein"
                     /protein_id="HFC6987752.1"
                     /translation="MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPL
                     NESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQ
                     IFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSN
                     SGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK"
     gene            7395..8478
                     /locus_tag="ACFOCA_001019"
                     /pseudo
     CDS             7395..8478
                     /locus_tag="ACFOCA_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519957.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SbmA/BacA-like family transporter"
     gene            complement(8648..8857)
                     /locus_tag="ACFOCA_001020"
     CDS             complement(8648..8857)
                     /locus_tag="ACFOCA_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987753.1"
                     /translation="MNYFGMVEFLRLMAMVRPPFVFFSGTRSELPTYLDLVAELRLTG
                     WERFAGSQTLTVSSTSTAIQATTTT"
     gene            complement(8854..9150)
                     /locus_tag="ACFOCA_001021"
     CDS             complement(8854..9150)
                     /locus_tag="ACFOCA_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase UvrD"
                     /protein_id="HFC6987754.1"
                     /translation="MDAKHRLKKYVYHLLVAIDQLFNALTGGAADETLSSRTYRGARL
                     AQKPKTRWKVLYTLINGVFFDRQHCRQAYISELKGRQHDARFNQSRAAGEKGTR"
     gene            complement(9129..9734)
                     /locus_tag="ACFOCA_001022"
     CDS             complement(9129..9734)
                     /locus_tag="ACFOCA_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987755.1"
                     /translation="MTIYFKNGFYDDTLGSIPEGAVAVRAEEYAALLAGQTQGGQIAA
                     DSDGRPVLTPPRPSEYHEWDGKKWEIGEAAAAARFAEQKTATAFRLAAKADELKNSLL
                     AGYPQVEIDSFYRQEKEALARQADNNAPTPMLAQIAAARGVELDVLIEKVVEKSARLA
                     VAAGAIIGKRQQLEDKLNTIETAPGLDALEKEIEEWTLNIG"
     gene            9819..10097
                     /locus_tag="ACFOCA_001023"
     CDS             9819..10097
                     /locus_tag="ACFOCA_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6987756.1"
                     /translation="MIVSFKHKGLERFFKTGSLSGIQAGHSVKLNLLLTALNAAQTPS
                     DMAVPSWNLHPLKGSLSGHWAVKVNGNWRLTFRFNDGNAEVVDYQDYH"
     gene            10105..10416
                     /locus_tag="ACFOCA_001024"
     CDS             10105..10416
                     /locus_tag="ACFOCA_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HFC6987757.1"
                     /translation="MKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQS
                     SITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQRKTFDIAPLFPEPPLSSMQTGAR
                     A"
BASE COUNT         2308 a         2993 c         2890 g         2408 t
ORIGIN      
        1 tttaaattta attcactata cacgcccttg atgacggttt tcatcgaata gacaatgcct
       61 gacttttcca tatcgatgtt tttcaagtgt tttcgagcct tcagacggca tcaggttata
      121 tctatgccgt ctgaaaccgt ttaagtatca aatattatcg acactctggc ctgtcaatgc
      181 gcgttggata ttgcggttca tgcgtttggc ggcgaagttg tcggtgctgc ggctgagttt
      241 ggcgacggcg gagcggatgt cttcggcttt tccgtctttc agacggcctt gcaaatcggc
      301 gatgccttgc cggatctgtt gcaattcttt ggcatccagt aaatcgctgt ccaactcgag
      361 ggcggcgttg acggcatcgg tcaggctttc ggcttcgact acggcttcgg cgcgggcgcg
      421 tgccgccata tcttcggcgg cgttgtccat actgtcttta agcattcggg taatcgcgcc
      481 gtcgtccaag ccgtaggaag gtttgacttc gatttgcgcc tgtacgccgg tgctttgttc
      541 ttgggcggaa acggacagca gcccgtccgc atcgatttgg aaggttacgc ggatacgcgc
      601 cgcacccgcc gccatcggtg gaatgccgcg cagggtgaat ttggcaaggc tgcggcagtc
      661 agaaacgagc tcgcgctcgc cttgcacgac gtgtatcgtc atcgcggttt gaccgtcttt
      721 gaaggtggta aagtcctgcg cgcgcgcggt ggggatggtg gaattgcgcg ggatgatttt
      781 ttccgccaag ccgccgtagg tttccaaacc gagcgacaaa ggtgtaacgt ccagcagcag
      841 ccattcgccg tcggttttgt tgcctgcgag gacgtttgcc tgtatggcgg cgccgagcgc
      901 gacgacttcg tcgggattga ggttgttcag cggggtttga ccaaagaaag tggcaaccgc
      961 ttgttgaacg tgcagcatac gggtcgaacc gccgaccata atcacgcctt tgacttcgtt
     1021 tttaccgaca ccggcatctt tcaacgcctg tgtgaccggt tcgagcgttt tcatcaccaa
     1081 atgctgcgtc aggttgtgga actcggcgcg actgatgctt gtgtcgattg ccatgccgtc
     1141 tgaaagcgtc gcctgaatgc gcgcttcggt ttgcgtggtt aattgttctt tggcggcgcg
     1201 gacgagcgag agcaggagtt ggctgtcttg ttcgttgagt tgggagagtc cgttttgttc
     1261 gagcaggcgg cagaacaggc ggtggtcgaa atcgtcgccg cccaacgcgc tgttgccgcc
     1321 ggtggctttg acttcaaaca gtcctttggt cagttgcaat acggatacgt cgaatgtgcc
     1381 gccccctaag tcgtacacga caaacgtgcc ttccgaggcg ttgtccagcc cgtaggcgat
     1441 tgcggcagcg gtgggttcgt tgagcaggcg caatacgttc aaacccgcca gacgcgcggc
     1501 atctttggtg gcttggcgtt gggcatcatc gaaataggca gggacggtaa tcaccacgcc
     1561 gaccaaatcg ccgcccaagg tttcttcggc gcgcgattta agggttttga ggatttccgc
     1621 cgacacttcg acaggcgttt tcaccccctg ccgcgtatgc agttcgataa cgcgttgatt
     1681 gtcgccgaaa cggtaaggca ggtaatgcgt attttgatgc agatcggcaa gcgtccgccc
     1741 gataaggcgt ttggcggagc tgacggtgtt cagcgggtcg gttttttggg cggacagggc
     1801 ggttttgccg acttcaatgc cgccgttttc cagatagcgg acgacggaag gcagggtaac
     1861 gcgcccttcg gcatcgggca gacaggcggc actgccgctg cggacggtgg cgaccaagct
     1921 gttggtcgta cccaaatcga tgcctgccgc caaacggtgc cggtgcgggg cggcggacat
     1981 acccggttct gaaatctgca aaagagccat aaattctgcc tgtcggtgcg gtgtgtaaag
     2041 gaaggaaagc ggcattttaa cagaatttgc gccgatagtt gagcaaaccg ctaaggattg
     2101 ggtcgtgccg ccgaaattgc cctctaccgc caaatgccga taaaatccgc ctttcccgcc
     2161 catcattagg aatataaatc gtgaaaggac tcgactattg ccgccaaaaa gcagaagaaa
     2221 gccgctccag ttttttgtcg ggcttccgtt tcctgactca ggaaaaacgg gatgcggtaa
     2281 cggttttata tgctttttgc cgcgaattgg acgatgtggt tgacgaatgt tccaaccccg
     2341 atgttgcaca ggcgacattg aactggtggc gcggcgattt ggacaaggta ttcggcggcg
     2401 cgatgccgga acaccccgtc aatcaggcct tgcggcaagt taaggaaacc ttcaagctgc
     2461 cgaaatatga actggaagcc ttaatcgacg ggatgcagat ggatttgctt cgggtgcgtt
     2521 acggcagttt tgaagaatta aaactgtatt gccgccgcgt cgcgggcgtg gtcggctgcc
     2581 tgattgcgcg gattttgggg ttttcagacg accaaacgct ggaatacgcc gacaagatgg
     2641 gacttgcgct gcaactgacc aacatcatcc gcgatgtcgg cgaagacgcg cgcaggggac
     2701 ggatttacct gccgatggag gaaatgcggc ggtttgatgt ccccgcaagc gtgattttgc
     2761 aatgcagccc gacgggcaat tttgccgaat tgatggcgtt ccaaatcaaa cgcgcccgtg
     2821 aaacctaccg cgaagccgta tcgctgctgc ctgatgccga taaaaaagcc caaaaagtcg
     2881 gactggtcat ggcggcggtt tattacgcgc ttttaaacga aatcgaccgg gacggcgcgc
     2941 aaaacgtcct caaatacaaa atcgccctcc cttcgccgcg caaaaaacgc attgccctga
     3001 aaacctggtt attcggattc aaaccgcgcc ccggcacgcc ggaacgggca taaggcgcat
     3061 accgcccgcc cttcaggaaa acccaacccc cgccgccccg aaaaacgggg tttcaaccat
     3121 tggaggaata aatgatgaac acgccgcatc cgcgcccgaa aatcgccgtc atcggcgcag
     3181 gctgggcagg actgtccgcc gccgtcacct tggcgcggca cgccgacgtt accctgtttg
     3241 aagccggccg gcaggcgggc ggcagggcgc gcacactggc cggaaatacc gacggtttcg
     3301 gttttttgga caacgggcag cacattttgc tcggcgcata ccggggcgtg ttgcgcctga
     3361 tgaaaaccat cggttcggat ccccgtgccg cctttttgcg cgtaccgctg cactggcata
     3421 tgcacggcgg tttgcagttc cgcgccctcc ccctgcccgc gccgctgcat attttgggcg
     3481 gcgtgctgct tgcccggcgt gcaccgactg cattcaaagc caaactgctt gccgatatgt
     3541 ccgatttgca gaagtccgca cgcctcggac agcccgacac gacagttgca caatggctga
     3601 aacagcggaa cgtgccgcgt gccgccgtga tgcagttttg gcagccgctg gtgtggggtg
     3661 cgctcaacac gcctttggaa accgcaagcc tgcgcgtgtt gtgcaacgtt ttgtccgacg
     3721 gcgtgctgac gaaaaaatcc ggcagcgact atctcctacc caagcaggat ttgggcgcaa
     3781 tcgtcgccga acccgccttg gcggagcttc aacggctcgg cgcggacatc cgcctcgaaa
     3841 cgcgcgtatg ccgtctgaac cccctcccgg acgggaaagt gctcgtcaac ggcgaagctt
     3901 tcgatgccgc cgtccccgcc accgcgccct accacgccgc cgcgctcctg cccgaaggca
     3961 cgcccgaaca cgttcagacg gcatatcaaa accttcgcta tcacgccatc accaccgtct
     4021 atctgcgcta cgccgaaccc gtccgcctgc ccgccccgct gaccggcctt gccgacggca
     4081 cggtgcaatg gctgctttgc cggggcaggc tcggactgcc tgaaaacgaa gtgtccgccg
     4141 tcatcagcgt ttccgaccgc gtcggcgcgt ttgcaaaccg ggcgtgggcg gacaaagccc
     4201 acgccgacct caaacgcatc cttccgcatt tgggcgaacc cgaagccgtg cgcgtcatca
     4261 ccgaaaaacg cgccacaacc gcagccgatg ccccaccacc ggatttgtcg tggctgcacc
     4321 ggcaccgcat cttccccgcc ggcgactacc tccacccaga ctaccccgcc acgctcgaag
     4381 ccgccgtaca atcaggtttc gcttccgcgg aagcctgcct gcaaagcctg aacgatgccg
     4441 tctgaaaacg ccggccggca tcaggacgct ttacaaggtg cggcaaaacg ctaaaatacc
     4501 cccgaccgac caccaaaaag gaaaaagtat ggcgacactg accgacaaaa ccatcttagt
     4561 taccggcgca tcgcaagggc tgggcgaaca ggttgccaaa gcctatgcgg cggcaggcgc
     4621 aaccgtgatt ctggtggcac gccatcagaa aaaactggaa aaagtctatg acgcgattgt
     4681 cgaagccgga taccccgaac cattcgccat ctgctttgac cttattagcg cggaagaaaa
     4741 agaatttgaa catttcgccg ccaccattgc cgaagccacg caaggcaaac tggacggcat
     4801 cgtccactgc gccggctatt tttacgccct ctcgccgctg gatttccaaa ccgtcgccga
     4861 atgggtcaac caataccgca tcaacaccgt cgcacctatg gggctgaccc gcgccctgtt
     4921 cccgctgctg aagcagtcgc ccgacgcgtc cgtcatcttc gtcggcgaaa gccacggcga
     4981 aacacccaaa gcctactggg gcggcttcgg cgcgtccaaa gccgcgttga actacctgtg
     5041 caaagtcgcc gccgacgaat gggaacgctt cggcaacctg cgcgccaacg tcctcgtccc
     5101 cggccccatc aattccccgc aacgcatcaa atcccatccg ggcgaagcca aaagcgaacg
     5161 caaaagctac ggggacgtgc tgcccgcatt tgtctggtgg gcaagtgccg aaagcaaagg
     5221 gcggagtggc gaaatcgttt acctctaaat ccggaaaagg caggcatccc gcccgcgccg
     5281 cgattccgtt tgaaaaatat ccgtaccttc cgcgcgcatc cgtcccgcac agacaaacac
     5341 cttgacttaa atttacataa ggacaataat gacaacccgt tatttcctta acttgacctt
     5401 agggtaaatt ttatgaaaac cgtttccacc gccgttgtcc ttgccgccgc tgccgtttca
     5461 ctgaccggct gtgcgaccga atcctcacgc agtctcgagg tagagaaagt cgcctcctac
     5521 aatacgcaat atcacggtgt tcgtaccccg atttccgtcg gaacattcga caaccgctcc
     5581 agcttccaaa aaggcatttt ctccgacggg gaagaccgtt tgggcagcca ggcaaaaacc
     5641 attctggtaa cgcacctgca acagaccaac cgcttcaacg tactgaaccg caccaatttg
     5701 aacgcattaa aacaggaatc cggcatttcc ggcaaagcgc ataacctgaa aggcgcagat
     5761 tatgtcgtta ccggcgatgt aaccgaattc ggacgcagag atgtcggcga tcatcagctc
     5821 ttcggcattt tgggtcgcgg caaatcgcaa atcgcctatg caaaagtggc tctgaatatc
     5881 gtcaacgtca atacttccga aatcgtctat tccgcacagg gcgcgggcga atacgcactt
     5941 tccaaccgtg aaatcatcgg tttcggcggc acttccggct acgatgcgac tttgaacggc
     6001 aaagttttag acttggcaat ccgcgaagcc gtcaacagcc tggttcaggc tgttgacaac
     6061 ggcgcatggc aacccaaccg ttaaggagaa atgatgaatc cgaaaacctt gagccgtttg
     6121 tcgctgtgtg cggcggtctt ggctctgacc gcctgcggcg acaacgggca aaaatccctg
     6181 tattattacg gcggctatcc cgataccgtc tatgaaggtt tgaaaaacga cgacacttcg
     6241 ttgggcaagc agaccgaaaa gatggaaaaa tactttgtgg aagccggcaa caaaaaaatg
     6301 aatgccgccc cgggtgcgca cgcccatctg ggactgctgc tttcccgttc gggagacaaa
     6361 gagggcgcgt tccgccagtt tgaagaagag aaaaggctgt ttcccgaatc gggcgtattt
     6421 atggacttcc tgatgaaaac cggtaaagga ggcaagcgat gaaacctttg attttagggc
     6481 ttgccgccgt gttggcgctg tctgcctgcc aagttcaaaa agcgcccgat ttcgactaca
     6541 cgtcattcaa ggaaagcaaa ccggcttcaa ttttggtggt tccgccgctg aacgaatcgc
     6601 ccgatgtcaa cggaacatgg ggtgtactgg cttcgaccgc cgcgccgctt tccgaagccg
     6661 gctattacgt cttccccgcc gcagtcgtgg aggaaacctt caaacaaaac ggcttgacca
     6721 atgccgccga tattcacgcc gtccggccgg aaaaactgca tcagattttc ggcaatgatg
     6781 cggttttgta cattacggtt accgaatacg gcacttcata tcaaatttta gacagcgtga
     6841 cgaccgtatc cgccaaagca cggctggtcg attcccgcaa cggaaaagag ttgtggtcgg
     6901 gttcggccag catccgcgaa ggcagcaaca acagcaacag cggcctgttg ggggctttgg
     6961 tcagcgcagt ggtcaatcag attgccaaca gcctgaccga ccgcggttat caggtttcca
     7021 aaaccgccgc atacaacctg ctgtcgccct attctcacaa cggcatcttg aaaggtccga
     7081 gattcgtcga agagcagccc aaataagcat atgccgtctg aacctctccg agcttcagac
     7141 ggcatatgcg aatcttgata cttgcaagcc gcaccgccca aaatcgggcg gccggtttca
     7201 atatccgaac aaggttcggg ttctgtattt tgcagaaccc gaacctttta ttcaaattta
     7261 aacttaattc cggcgtggtt gtatggtaaa ttaacacgca atatgccctg acctgcaaaa
     7321 cttccccaaa cttcatcaaa aaatcaactg tacccgtctt tttcagacgg cattgatacc
     7381 gtaagaaatt tcccatgcag aaatggcaaa ccgagcttta ttccacaccg ctttggcttt
     7441 gtctgacact gaaaagcgcg gtcaaagtct tgctgctgat tacggcgatg attacgctgg
     7501 tgttaaccga aatgcggctg aatgtgttga gtacctttat gtccaaaggg ctttacgact
     7561 cgatgcagga tttgaaatgc ttcggcattt tggatgtttg ctgcaatgaa cgcgggcgtg
     7621 gtgctgatac gggcgtttaa caacgtcgtc aacgacttcc tcgatcaagg cttggcgatt
     7681 aaatggtcgg agcggctcaa cgaagtgctg acagcacgct ggcttgccga caaaaactac
     7741 taccgcctgc aaatgcgccg ccacgcgcca gacaacatcg accagcgtat ccaacaggac
     7801 gcgcaggaat ttatcgcttc gaccatcgaa tttgtgcgcg gcatggtcaa ttcggtcgtt
     7861 acttctctgg aatttgccgt tgttttgcgg ggcttggctg gcatcctgac cgtgttcggc
     7921 ttcgacattc cgcacggcat cgtttggttt gtctatatat ttgtgatttt ggcgaccttt
     7981 atcgccatgt ggataggcaa ccctttgatt cgttacaatt atgaaaacga aaaactcaac
     8041 ggcgactacc gttattccct catccgcgtg cgcgaccacg ccgaaagcgt ggcgttttac
     8101 aacggcgaaa aacatgaata cgaccagctt tccgaccgct ttaaagccat tatccgcaac
     8161 cgttggcgca ttgcgcggca aagcgtctgc ttaagcggct ttaacgatat gttcaccaac
     8221 ggcatcaaac tcttcccgat tattttgcaa gctccgcgcc tgtttgccgg acaaatcaaa
     8281 atcggcgaca tccagcaaac cgtccaagcc ttcgcgcgac tgcaaaacgc gctttctttc
     8341 tttcgaatgt tctacaacaa attcaccgcc taccgcgccc gattggagcg tctgtacggc
     8401 tttttgctga gtaccgaaga acaacacagc gcgcggcaac ccgagattag cgaagtttca
     8461 gacggcattg cactggaatg taaggcggcg gcagcttttg cacgaattgg cggcagcttt
     8521 tgcaccgccg aagcgtagga aattgtatta gcttttgcac aaatttatcc ccgtttaatg
     8581 gtctgttaaa cggggattat cttatgcctt taaaagtagt acgctacttg cggtcagaac
     8641 ttataaatca ggtggtcgtc gtagcttgaa ttgctgttga tgtgctgctc acagtcaagg
     8701 tttggctgcc tgcaaaacgc tcccatccgg tcaggcgcag ttctgccacg aggtcaagat
     8761 aagtaggcag ttcgctgcgg gtgccggaga agaagacaaa tggcggccgc accattgcca
     8821 tcaggcgcag aaactctacc atgccgaagt agttcatcgc gtcccctttt ccccggcggc
     8881 gcggctttgg ttgaaccgcg cgtcgtgctg cctgcctttc agttcgctga tatacgcctg
     8941 ccgacagtgt tggcggtcga aaaacacgcc gttgatcagg gtgtataaaa ccttccagcg
     9001 ggttttgggc ttttgggcga gccgcgcgcc gcgataggtg cggcttgaga gggtttcgtc
     9061 cgccgcgccg ccggttaggg cgttgaacag ttggtcgatg gctaccaaca ggtggtaaac
     9121 gtattttttc agccgatgtt tagcgtccat tcttcgattt ccttttccag cgcgtccaat
     9181 cctggcgcgg tttcgatggt gttcaatttg tcttcgagct gctgccgctt tccgataatc
     9241 gcgccggcgg caacggccag gcgggcggat ttttcgacaa ctttttcaat caaaacgtcc
     9301 aattccacgc cccttgcggc ggcgatttgc gccagcatcg gggtcggggc gttgttgtcc
     9361 gcctgccgcg cgagggcttc tttttcctgc ctgtaaaagc tgtcgatttc cacttgggga
     9421 tagcccgcca agaggctgtt tttgagttcg tccgcctttg ccgcgaggcg gaatgccgtg
     9481 gcggtttttt gttcggcgaa acgggcggcg gcagcggctt cgccgatttc ccatttcttg
     9541 ccgtcccatt cgtggtattc ggacgggcgc ggcggggtta aaacggggcg gccgtcggaa
     9601 tctgcggcaa tctgcccgcc ctgcgtctgt cctgccaaaa gggcggcgta ttcttcggcg
     9661 cggacggcaa ccgcgccttc ggggatgctg cccaatgtgt cgtcgtaaaa gccgtttttg
     9721 aaatagatgg tcatttcggg gtttcctttt ttgtatatcg tcgctttaca attaaataaa
     9781 agttttgtat cctttggcga tacagacggg gtgggatgat gattgtttct ttcaaacaca
     9841 aagggcttga acgctttttt aaaacaggct cgctatcggg catccaagcc gggcattccg
     9901 tcaaactgaa tctgcttcta accgcgctga atgccgcgca aacgccttcg gatatggctg
     9961 tgccgagttg gaatcttcat cccctcaagg gcagtttgtc gggacattgg gcggttaaag
    10021 tcaacggaaa ttggcgtttg acttttcgtt tcaacgacgg caatgccgaa gttgtcgatt
    10081 atcaggatta tcactaggaa taatatgaaa atgcacaatc ctgcccaccc gggccttgtt
    10141 ttaaaagagt atattaacgg tgcaagcatt accgatatag cgaaacgcct gggtgtcagc
    10201 cgggttgcct tatcgcgcat tgtcaacgcc caatcttcga ttacgcccga gatggcggtt
    10261 cgtttaagcc aactgctcaa tacttcgcct gatttttggc tgaatatgca ggccggttat
    10321 gatttgtggc aaatcaggca acgcaaaact tttgatattg cgcccttatt tcccgaaccg
    10381 cctttgtctt cgatgcaaac aggtgcaagg gcttaaccct gcggccgctg cttatcgggc
    10441 gcgcccgact atcctttccc gcgcggtttc ggccgtgcgg ttttttgttg ccggtgccgt
    10501 ccgaaggggg cagcggcttt ttgcgcggtc attcccgcct ttcgttattc ccgccacttt
    10561 ccgtcattcc cgcgaaggcg ggaatcccga aacccctgc
//
LOCUS       DAXIFS010000058        10484 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.058, whole genome shotgun sequence.
ACCESSION   DAXIFS010000058 DAXIFS010000000
VERSION     DAXIFS010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10484
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.058"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(412..1629)
                     /locus_tag="ACFOCA_001025"
     CDS             complement(412..1629)
                     /locus_tag="ACFOCA_001025"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFC6987758.1"
                     /translation="MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMS
                     GETNRLVALAHEMQEHPDPRELDVVLSTGEQVTIGLLAMALKDIGVEAKSYTGWQVAL
                     KTDTAHTKARIESIDDEKMRADLAAGKVVIVAGFQGISSEGDISTLGRGGSDTSAVAL
                     AAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEF
                     AGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPG
                     VAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAAS
                     IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYME
                     LATRVLHKAFNLG"
     gene            complement(1831..2559)
                     /gene="rph"
                     /locus_tag="ACFOCA_001026"
     CDS             complement(1831..2559)
                     /gene="rph"
                     /locus_tag="ACFOCA_001026"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0009022 - tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HFC6987759.1"
                     /translation="MPDYIRISRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTA
                     SIDENVPPFLRGKNQGWVTAEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLR
                     AVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIRE
                     AVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELG
                     KLVALAQKGIGELLQHQQNALSAA"
     gene            complement(2641..3105)
                     /locus_tag="ACFOCA_001027"
     CDS             complement(2641..3105)
                     /locus_tag="ACFOCA_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HFC6987760.1"
                     /translation="MYKHLVVAVDGSETSINALKHAAELAGVNGARLTLVHVANPAEY
                     MALAPEFLQHESYEAAAVAQGNEVLDAAERTARELGVENTVKHLLVANKGAREMAQDL
                     VDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA"
     gene            3322..4098
                     /locus_tag="ACFOCA_001028"
     CDS             3322..4098
                     /locus_tag="ACFOCA_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6987761.1"
                     /translation="MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWA
                     VEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERVAQINPGCQVF
                     EIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNP
                     ALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKANMRVPCVYSTENIVPPQSREAC
                     SADAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK"
     gene            4343..5197
                     /locus_tag="ACFOCA_001029"
     CDS             4343..5197
                     /locus_tag="ACFOCA_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HFC6987762.1"
                     /translation="MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSF
                     QGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIETYQFDLAAEYLLMAAMLIEI
                     KSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLE
                     IAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNGHGIC
                     RFHDLFNPEQGAAYVVVNFIALLELAKEGLVGIVQEVGFGEIRISLNHEGAHSDGISG
                     TRGGRDVF"
     gene            5238..6446
                     /gene="pncB"
                     /locus_tag="ACFOCA_001030"
     CDS             5238..6446
                     /gene="pncB"
                     /locus_tag="ACFOCA_001030"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFC6987763.1"
                     /translation="MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVY
                     PLADIREDLEVELDALCQLRFTHDELDYLRSLRFIKSDFVDYLELFQLQRRFVEVGTD
                     DKDRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEI
                     AAAQNPDDPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVFLAKKLGITP
                     IGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLY
                     FAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKD
                     RFKTGFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNSTFLAYLRQ
                     VFDVPEPETP"
     gene            6538..8256
                     /gene="argS"
                     /locus_tag="ACFOCA_001031"
     CDS             6538..8256
                     /gene="argS"
                     /locus_tag="ACFOCA_001031"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFC6987764.1"
                     /translation="MNLHQTVEHEAAAAFAAAGIADSPVVLQPTKNAEHGDFQINGVM
                     GAAKKAKQNPRELAQKVADALAGNAVIESAEVAGPGFINLRLRPEFLAQNIQTALNDA
                     RFGVAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVLEFMGNTVIRQNHVG
                     DWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPAFADTAREYVVKLQG
                     GDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQAVVDDLVQKGL
                     AVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRVGTLHADRLLY
                     VVDHRQALHFEQLFTTSRKAGYLPENVGAAFVGFGTMMGKDGKPFKTRSGDTVKLVDL
                     LTEAVERATALVKEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLS
                     FEGNTAPYLQYAYTRVQSVFRKAGEWDADAPTVLTEPLEKQLAAELLKFENVLQSVAD
                     TAYPHYLAAYLYQIATLFSRFYEACPILKAEGASRNSRLQLAKLTGDTLKQGLDLLGI
                     DVLDVM"
     gene            8822..10240
                     /locus_tag="ACFOCA_001032"
     CDS             8822..10240
                     /locus_tag="ACFOCA_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HFC6987765.1"
                     /translation="MNIHALLSKQWTLPPFLPKRLLLSLLILLAPNAMFWVLALLTAT
                     ARPIVNLDYLPAALLIALPWRFVKIAGVLAFWLAVLFDGLMMVIQLFPFMDLIGAINL
                     VPFILTAPTPYQIMTGLLLLYMLAMPFVLQKAAAKTDFRHIAVCAAVVAAAGYFTGHL
                     SYYDRGRMANIFGANNFYYAKSQAMLYTVSQNADFITAGLVDPVFLPLGNQQRAATHL
                     NEPKSQKILFIVAESWGLPANPELQNATFAKLLAQKDRFSVWESGSFPFIGATVEGEM
                     RELCAYGGLRGFALRRAPDEKFARCLPNRLKQEGYATFAMHGAGSSLYDRFSWYPRAG
                     FQEIKTAENLIGKKTCAIFSGVCDSELFGEVSAFFKKHDKGLFYWMTLTSHADYPKSD
                     IFNHRLKCTEYGLPAETDLCRNFSLHTQFFDQLADLIQRPEMKGVEVIIVGDHPPPVG
                     NLNETFRYLKQGHVAWLHFKIK"
BASE COUNT         2393 a         3062 c         2653 g         2376 t
ORIGIN      
        1 cactataaag accgtcgggc atctgcagcc gtcattcccg cgcaggcggg aatctagtcc
       61 gttcggtttc ggtttttttg gctagtgccg caacattaaa tttctagatt cccactttcg
      121 tgggaatgac gggatgtata gtggattaac aaaaccagta cggcgttgcc tcgccttagc
      181 tcaaagagaa cgattctcta aggtgctgaa gcaccaagtg aatcagttcc gtactatttg
      241 tactgtctgc ggcttcgtcg ccttgtcctg atttttgtta atccactata aatttaatcc
      301 actatatttt ttgttccaaa gtcaaaatat gccgtccgaa cattcgggcg gcagacaaaa
      361 cggcactgcc cgataaaggc agtgccgttg tccgtttcaa accgtgaaac atcagcccaa
      421 attaaaggct ttatgcaata ccctggttgc cagttccatg tatttttcat caatcaatac
      481 ggaaactttg atttcggagg tggaaatcat ttggatgttg ataccctctt cggcgagcgt
      541 gcggaagatt ttggcggcta caccgacgtg cgaacgcata cccaaaccga ctgcggagac
      601 tttgcacacg gtgtcgtcgc cgtcgataga agccgcgccg atactgtctt gacgttccga
      661 caggatttcc aaagtctgct tgtaatcgcc gcgcggtacg gtaaaggaaa aatcggttgt
      721 gccttcgctg ccgacatttt ggataatcat atcgacttcg atgttggcat cggcaaccgc
      781 gcctaaaatc tgataggcga cgccgggttt gtcgggtacg ccgcgcacgt tgatgcgggc
      841 ttggtttttg tcgaatgcga taccggttac ggcagctctt tccatattgt cgtcctcttc
      901 aaaggtaatt aaggtgccgt tgccgccgtc ttgcaggctg ctcagtacgc gcaggcgcac
      961 tttgtatttt ccggcaaatt ctactgaacg gatttgcaaa actttcgagc caaggctggc
     1021 cagctcaatc atctcttcaa acgttaccgt atccatgcgg cgcgcttcgg gtacgacgcg
     1081 ggggtcggtg gtgtaaacgc cgtccacgtc ggtatagatt tggcattcgt ctgctttgag
     1141 ggctgcggcg agcgcaacgg cggaggtgtc ggagccgccg cgtccgagcg tggaaatgtc
     1201 gccttcgctg ctgatgcctt ggaaaccggc gacgatgacg actttgccgg cggcaaggtc
     1261 ggcacgcatt ttttcgtcat caatgctttc gatgcgggct ttggtgtggg cggtatcggt
     1321 tttgagggcg acctgccagc cggtgtagct tttggcttcc acgccgatgt ctttcaatgc
     1381 catcgccaaa aggccgatgg ttacttgttc gccggtggac aaaaccacgt ccaattcgcg
     1441 cggatcggga tgctcctgca tttcgtgcgc caacgcgacc aggcggttgg tttcaccgct
     1501 catggcggat acgacgacga cgatgtcgtg tccttcggcg cgggctttgg cgacacgttt
     1561 ggccacgttt ttaatgcgtt cgggcgagcc tacggatgtg ccgccgtatt tatgtacgat
     1621 taacgccatg tttcgtgctt tcttgtgtgg gattggtcgg gcagcatggt ttgctggaaa
     1681 agcggctatt attactattt tttacatgaa gttcaagaac ggactgcgct ttcccgcctg
     1741 ccgtttgaca gcggtcagcg aaaaacctgt tctttcagat tgttgacaaa atgccgtctg
     1801 aacggttttc agacggcatc cggacgacaa tcaggcggcg gacaacgcat tttgctggtg
     1861 ttgcagcagt tcgcctatgc ctttttgcgc cagtgcaacc agtttgccca attcgtccaa
     1921 actgaacggc gcgtcttccg ccgtaccttg gatttcgatg atttttcccg atgcggtcat
     1981 gacgatattc acatcactgt cgcaaccgga gtcttcggga taatccaaat ccaaaagcgg
     2041 cacgccgttc actacgccta ctgacacagc ggcaacggct tcgcggatgg ggttttcact
     2101 caaaatgccg tctgaaacca gtttgccgac ggcgatttgc agcgcgacaa acgcaccggt
     2161 aatcgaagcc gtgcgcgtac cgccatctgc ctgaatcaca tcgcagtcaa tcaagatttg
     2221 tcgttcgccg agtttttcca tatctacgac cgcgcgtagc gaacgcccga taaggcgttg
     2281 gatttcttgt gtgcgcccgg actgtttgcc cgccgaagct tcgcggcgca tccgggaagc
     2341 agttgaggca ggcagcatcc cgtattccgc cgttacccag ccttggtttt taccgcgcag
     2401 aaacggcggg acgttttcat ctatggaagc ggtacaaatc actttggtat tgccgcattc
     2461 aataaggcac gaaccgtccg tatgcggcag gaaatgaggg gtgattttga tatcgcgcag
     2521 gctgtccgcg gcgcgcgaga tgcggatgta atcaggcata ctgccctccc gttaaaaaca
     2581 gataaattaa aaagccttaa atatgaaaaa tcacatttaa ggccttcaaa ctgaaaattt
     2641 ctacgcctct tcggctttgc tgcggataat caaaagcggc aggtggcttt ggcgcattac
     2701 cgtttcggca aaactgccca ttaaaaggtg catcagtccg gtacgtccgt gcgtacccaa
     2761 caccagcagg tcggcaccgt tttcatcggc ataatcaacc aaatcctgcg ccatttcacg
     2821 cgcaccctta ttggcaacca gcaggtgttt gacggtattt tccacaccca gttcccgggc
     2881 ggtgcgctcg gcggcatcca aaacttcgtt gccttgcgcg acggcggcgg cttcgtagct
     2941 ttcgtgttgc aaaaattcgg gggcgagcgc catatattcg gcaggattgg caacgtgtac
     3001 caaagtcaga cgcgcaccgt tgaccccggc aagctcggcg gcatgtttca gggcattgat
     3061 ggacgtttca ctgccgtcaa cggcaacaac cagatgtttg tacatatcgt attctccttt
     3121 tgcaccgcct cgcggtgccc tcttgtcgga tgggcgcagg gacagtttgc gccgtttcat
     3181 tatagacccg ctgtcgggct ttatacaaca gccgaacagc ccgaccgctt tccagtataa
     3241 tatgccgctt ccgtgcagtc aggcattttt tgccggcttt cgttcacttt ttgatttgac
     3301 gcaatcttgc aggattcgac catgtccgac aacgctttga cctcttcgcg acgcttcggc
     3361 ggcatcgcca gactctacgg agactctgcc ttggcgcact tttcacaggc acacgtctgc
     3421 gtagtcggcg tgggcggtgt cggctcgtgg gcggtcgagg ctttggcgcg gacgggcatc
     3481 ggacgtttga ctttgattga tttggacaac gttgccgaat cgaatgtcaa ccgccagctg
     3541 cacgccctga ccggcgactt cggcaaagca aaagttaccg ccttgcgcga acgcgtcgcc
     3601 caaatcaacc caggatgcca agtgtttgaa attgaagatt tcgttaccga agacaatttg
     3661 ccggaatact tcggaaaagg ttttgatttc gtcatcgacg cgatcgacca agtgcgcgtc
     3721 aaagcagcaa tggcggctta ttttgtggaa cgcaaacaac cgtttgtcct cagcggcggc
     3781 gcgggcggac aaaaaaatcc ggcgttaatc caaaccgccg atttgagccg cgtaacccac
     3841 gacccgctgc ttgccaacct gcgctacacc ttgcggaaac gctacggatt cagccgcgat
     3901 acgaaagcaa atatgcgcgt gccttgcgtg tattcgaccg aaaatatcgt gccgccgcag
     3961 tctagggagg cttgttcggc agatgccgct ccgcaaggct tgtcgtgcgc cggctacggt
     4021 gcaagcatgc tcgttaccgc ttcgttcggg ctatattgcg cacaggcggc ggtggaacac
     4081 atcgcagaca aaaaataagc aatgccgtct gaaacaggat tcagacggca tttgaacaaa
     4141 cgcggcaatc aagctgtcgg ttcagaaaaa ccaacatcgg cacgcctaaa accgtattca
     4201 caacctgctc cttttcaaaa catttgcatt taaaagccgt tataataccg tctgaacatc
     4261 tgcccgacca cattatacgt gaatgtcggc agattgtttt cttttgtaaa cttatattaa
     4321 aatccactta ccgattcacg ccatgccgcc catccctgcc ccatccgcac catccgagca
     4381 cactgtcgca tgggtattcg gccaacccgt taccgatttg ccgcaggatt tgtttatccc
     4441 gcccgacgcg ctgaaagtcg tattgggcag ttttcaaggc cctttggatt tgctgctcta
     4501 ccttatccgc aagcagaaca tcgatgttct cgatattccg atggtgaaga ttaccgagca
     4561 gtatctgcac tacatcgccc aaatagaaac ctatcagttt gatttggcgg cggaatatct
     4621 tttgatggca gcaatgctga ttgaaatcaa atcgcgcctg ctgctgccgc gtaccgaaac
     4681 cgtcgaagac gaagaagccg acccgcgtgc cgagttggtg cgccgcctgc tggcttacga
     4741 acagatgaag ctggcggcgc agggtttgga cgcgctgccc cgagccggac gggatttcgc
     4801 gtgggcttac ctgccgctgg aaattgccgt cgaagccaag ctgcccgaag tctatattac
     4861 cgacttgacg caagcgtggc tgggtatttt gtctcgggca aaacacacgc gcagccacga
     4921 agtaatcaaa gaaaccatct ccgtgcgcgc gcaaatgacg gcaatcctgc gccgtttgaa
     4981 cggacacggg atatgcaggt ttcacgacct gttcaatccc gaacagggcg cggcttacgt
     5041 ggtcgtcaac ttcatcgcac tgttggagct tgccaaagaa ggtttggtcg gaatcgtaca
     5101 ggaagtcggt ttcggagaaa tccgaatcag cctcaatcat gagggggcgc attcagacgg
     5161 catttccggc acacggggcg ggcgcgatgt gttctaatac gccccaagcc gccaccaaaa
     5221 atcgggagac acgccatatg accggcatca tacattcgct gcttgacacc gacctctaca
     5281 aattcactat gctgcaagtg gttctgcacc agtttccgca gacgcacagc ctttacgaat
     5341 tccgctgccg caacgcctcg accgtctatc cgcttgccga catcagggaa gacttggaag
     5401 tcgaactcga cgcgctctgc caactacgct tcacccacga cgaactcgac tacctccgta
     5461 gcctgcgttt cattaaaagc gactttgtcg attatctcga actcttccag ctccaacgcc
     5521 gctttgtcga agtcggcaca gacgataaag accgtctgaa catccgtatc gaaggtccga
     5581 tgatacaggc gatgtttttt gaaatcttca tcctcgccat tgtcaacgaa ctttacttcc
     5641 gccggctgga aacccctgcc gttatcgaag aaggtgaacg ccggcttcaa gccaaagccg
     5701 cgcgcctcaa agaaatcgcc gccgcacaaa accccgacga tccgcccttc ctgatttccg
     5761 acttcggcac gcgccgccgc tacaagctcg cgtggcagga acacgtcatc cgcaccctgc
     5821 tcgaagccgc cccaagcatc gtgcgcggca ccagcaatgt ctttctcgcc aaaaaactcg
     5881 gcattacccc catcggcacc atggcgcacg aattcctcca agccttccag gccctcgacg
     5941 tacgcctgcg gaatttccaa aaggccgcgc tcgaaagctg ggtgcacgaa taccggggcg
     6001 atttgggcgt tgccctgacc gacgttgtcg gtatggatgc cttcctgcgc gatttcgacc
     6061 tctatttcgc caaacttttc gacgggctgc gccacgacag cggcgaccct tacgtttggg
     6121 gcgacaaagc ctacgcccac tatcaaaagc tcaaaatcga cagccgcacc aaaatgctga
     6181 ccttctccga cgggctggac atcgaacgct cttgggcatt gcaccaatat ttcaaagacc
     6241 gcttcaaaac cggcttcggc atcggcacca acctcaccaa cgatatgggg catacgccct
     6301 tgaatatcgt cttgaaactg gtcgaatgca acgggcagtc cgtcgccaag ctgtccgact
     6361 ctccgggcaa aaccatgacc aacaacagca ccttcctcgc ctacctgcgc caagtgttcg
     6421 acgtacccga acccgaaacg ccgtaaaccg gcagaaaaag cgcacaattc ctgtttctgc
     6481 cgcataaaat cttttaaaat accgcctgat ttgaatttaa ccgaaagacc gaacttcatg
     6541 aacctacatc aaaccgtcga acacgaagcc gccgccgcct ttgccgccgc aggcatcgcc
     6601 gacagtcccg ttgttttgca gccgaccaaa aatgccgaac acggcgattt ccaaatcaac
     6661 ggcgtgatgg gtgcggcgaa aaaagccaaa caaaacccgc gcgaactggc gcaaaaggtc
     6721 gccgacgcat tggcaggcaa cgccgtcatc gaaagcgcgg aagtcgccgg tcccggtttt
     6781 atcaacctgc gcctgcgccc cgaatttctc gcgcaaaaca ttcagacggc cttgaacgac
     6841 gcacgtttcg gcgtggcaaa aaccgacaaa ccgcaaaccg tcgttatcga ctattcttcg
     6901 cccaatctgg cgaaggaaat gcacgtcggc cacctgcgtt ccagcatcat cggcgacagc
     6961 atttcgcgcg tgttagaatt tatgggcaat accgttatcc gtcaaaacca cgtcggcgac
     7021 tggggtacgc agtttggcat gttggtcgct tatttggtcg agcagcaaaa agacaatgcc
     7081 gcgttcgagt tggcggattt ggagcagttt taccgcgccg ccaaagtgcg ctttgacgaa
     7141 gaccctgcct ttgccgacac cgcacgcgaa tacgttgtga agctgcaagg cggcgatgaa
     7201 accgttttgg cattgtggaa acagtttgtc gatatttcgc tctcgcacgc ccaagccgtt
     7261 tacgacacgc tgggcttgaa gctgcgccct gaagacgtgg caggcgaatc gaaatacaac
     7321 gacgatttgc aagccgtggt cgatgatttg gttcaaaaag gcttggcggt cgaagacgac
     7381 ggcgcgaaag tcgtgttctt ggacgagttt aaaaacaaag aaggcgaacc cgccgcattt
     7441 atcgtgcaaa aacaaggcgg cggcttcctt tatgcttcca ccgatttggc gtgtctgcgc
     7501 taccgtgtcg gcacgcttca tgccgaccgc ctgctgtacg tcgtcgacca ccgccaagcc
     7561 ctgcactttg agcaactctt taccacttca cgcaaagccg gctatctgcc ggaaaacgtc
     7621 ggcgcggcat ttgtcggctt cggcacgatg atgggcaaag acggcaaacc gttcaaaaca
     7681 cgcagcggcg acaccgtgaa actggtcgat ctgctgaccg aagccgtcga acgcgccacc
     7741 gctttggtga aagaaaaaaa tcccgaattg ggtgcagacg aagcggcaaa aataggcaaa
     7801 accgtcggca tcggcgcggt caaatacgcc gacttgagca aaaaccgcac cagcgattat
     7861 gtgttcgact gggacgccat gctctcgttt gaaggcaaca ccgcccccta tctgcaatac
     7921 gcctacaccc gcgtgcaaag cgtgttccgc aaagcaggcg aatgggacgc ggacgcgcca
     7981 accgttttga ccgaaccttt ggaaaaacaa ctggccgccg agcttttgaa atttgaaaac
     8041 gtgctgcaaa gcgtggcgga cacggcgtat ccgcactacc tcgccgccta cctctatcaa
     8101 atcgctacct tgttcagccg cttctacgaa gcctgcccga ttttgaaagc cgaaggcgca
     8161 agccgcaaca gccgcctgca actggcgaag ctcaccggcg acacgctgaa acaaggcttg
     8221 gatttgctgg gcatcgatgt gttggacgta atgtaaaacc gcaccgcccg attgcggaca
     8281 acagccccgc aatcaaccgg cggaccatcc ttatccgaat ctgaaaaaag cggcgcgata
     8341 caccgtatcc gccgcctccc aaaatgcgaa acagacaaac gccaagcaag caagcaagca
     8401 agcaagcaag caagcaagca agcaagcaaa aaattataac ccccttcctg ccgacgcacg
     8461 cactttccgc gcggcgcgtt ccccttttcc cgctcctcaa acccgccttt tcttcaggca
     8521 gggtttcagc ccgcctcctt tccctgtttt ccttccctca acacgcgtgc gcgccccctg
     8581 ccgcaccgtg ccgcactttc gcgcccggac ggcatcggtc tgtcatccgg ttctctgttt
     8641 taaatacccc tgtttcagaa agaaattgca gatgtttcaa cacacaggac gacacataaa
     8701 gcaccgccct atgtgttgcc ctgatttgga aggggttgcg cccctcccaa ataaagtctg
     8761 atcctgccgc cccgaaggac agatgtccga gtggcggggt ttcaaccgaa aaggaaatac
     8821 gatgaatatt cacgccctgc tctccaaaca atggacgctg ccgccattcc tgccgaaacg
     8881 gctgctgctg tccctgctga tactgctggc ccccaatgcg atgttttggg ttttggcact
     8941 gctgaccgcc accgcccgcc cgattgtcaa tttggactac cttcccgccg cgctgctgat
     9001 cgccctgcct tggcgtttcg tcaaaattgc cggcgtattg gcgttttggc tggcggtttt
     9061 gtttgacggg ctgatgatgg tgatccagct tttccctttt atggacctca tcggcgccat
     9121 caacctcgtc cccttcatcc tgaccgcccc caccccttat cagataatga ccgggctgtt
     9181 gctgctgtat atgctggcga tgccgtttgt gttgcagaaa gccgccgcca aaaccgactt
     9241 ccggcacatt gccgtctgcg ccgccgttgt ggcggcagcc ggctatttca ccggccattt
     9301 gagttactac gaccgggggc ggatggccaa tatcttcggc gcaaacaact tctattacgc
     9361 caaaagtcag gcgatgctct acaccgttag ccagaatgcc gactttatta ccgccggcct
     9421 ggtcgatccc gtcttcctcc ccttgggcaa tcagcagcgt gccgccacgc atctgaacga
     9481 gccgaaatct caaaaaatcc tctttatcgt cgccgaatct tgggggctgc cggccaatcc
     9541 cgaacttcaa aacgccactt ttgccaaact gctggcgcaa aaagaccgtt tttcggtttg
     9601 ggaaagcggc agttttccct tcatcggcgc gacggtcgaa ggcgaaatgc gcgaattgtg
     9661 cgcctacggc ggtttgcgcg ggttcgcact gcgccgcgcg cccgacgaaa aatttgcccg
     9721 ctgcctcccc aaccgtttga aacaagaagg ttacgccacc tttgcgatgc acggcgcggg
     9781 cagttcgctt tacgaccgct tcagctggta tccgagggcg ggctttcaag aaatcaaaac
     9841 cgccgaaaac ctgatcggta aaaaaacctg cgccattttc agcggcgtgt gcgacagcga
     9901 gctgttcggc gaagtgtcgg catttttcaa aaaacacgac aagggactgt tttactggat
     9961 gacgctgacc agccacgccg actatcccaa atccgacatt ttcaaccaca ggctcaaatg
    10021 caccgaatac ggcctgcccg ccgaaaccga cctctgccgc aatttcagcc tgcacaccca
    10081 atttttcgac caactggcgg atttaatcca acgccccgaa atgaaaggcg tggaagtcat
    10141 tatcgtcggc gaccatccgc cgcccgtcgg caacctcaat gaaaccttcc gctacctcaa
    10201 acaggggcac gtcgcctggc tgcacttcaa aatcaaataa caacaatgcc gtctgaacgc
    10261 accaacagcc ttcagacggc attttgcaga caggccgacc ccctcaagcc cacttttttc
    10321 atcatttccg ataaattgct ttgtatagtg gattaacaaa aaccagtacg gcgttacctc
    10381 gccttagctc aaagagaacg attctctaag gtgctgaagc acctagtgaa tcggttccgt
    10441 actatttgta ctgtctgcgg cttcgtcgcc ttgtcctgat tttt
//
LOCUS       DAXIFS010000059        10099 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.059, whole genome shotgun sequence.
ACCESSION   DAXIFS010000059 DAXIFS010000000
VERSION     DAXIFS010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10099
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.059"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(129..464)
                     /locus_tag="ACFOCA_001033"
     CDS             complement(129..464)
                     /locus_tag="ACFOCA_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6987766.1"
                     /translation="MFKDWKEHTALVKKSFGELGKAHPKMLQAYGALEQAAAAEALDA
                     KTRELIAIAVAITTRCESCISVHAAAAAKAGATDSEIAGALATAIALNAGAAYTYALR
                     ALEAVETQK"
     gene            593..1498
                     /gene="mtrA"
                     /locus_tag="ACFOCA_001034"
     CDS             593..1498
                     /gene="mtrA"
                     /locus_tag="ACFOCA_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter MtrCDE transcriptional
                     activator MtrA"
                     /protein_id="HFC6987767.1"
                     /translation="MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLVHIVT
                     SGSGYLCIDGETSPRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQC
                     GNGQDMSLFCARFRYDTHADLMNGLPETVFLNIAHPSLQYVVSMLQLESKKPLTGTVS
                     VVNALSSVLLVLILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKM
                     VAAANMSRAQLMRRFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSE
                     THFGKAFKRQYHVSPGQYRKEGGQK"
     gene            complement(1560..2048)
                     /locus_tag="ACFOCA_001035"
     CDS             complement(1560..2048)
                     /locus_tag="ACFOCA_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6987768.1"
                     /translation="MKKYLIPLSIVAVLSGCQSIYVPTLTEIPVNPINTVKTEAPAKG
                     FRLASSHWTDVAKISDEATRLGYQVGIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYE
                     IYLRSAIDSQRGAINTEQSKLYIQNALRGWQQRWKNMDVKPNNPAFTNFLMEVMKMQP
                     LK"
     gene            2195..3097
                     /locus_tag="ACFOCA_001036"
     CDS             2195..3097
                     /locus_tag="ACFOCA_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6987769.1"
                     /translation="MDTAKKDILGSGWMLVAAACFTIMNVLIKEASAKFALGSGELVF
                     WRMLFSTVALGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTL
                     SYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGG
                     AMSGWAYLKVRELSLAGEPCWRVVFYLSVTGVAMSSVWATLTGWHTLSFPSAVYLSCI
                     GVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEELFWQEILGMCIII
                     LSGILSSIRPTAFKQRLQSLFRQR"
     gene            complement(3138..4268)
                     /locus_tag="ACFOCA_001037"
     CDS             complement(3138..4268)
                     /locus_tag="ACFOCA_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6987770.1"
                     /translation="MAKHLPLAVLTALLLAACGGSDKPPAEKPAPAENRNVLKIYNWS
                     EYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAG
                     AYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTD
                     KLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATA
                     LLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIAKRRAEEAGGKEKIRVMMPK
                     EGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARELMEDE
                     FKNDNTIFPTEEDLKNSFIMVPIQPAALKFMVRQWQDVKAGK"
     gene            4473..7097
                     /gene="alaS"
                     /locus_tag="ACFOCA_001038"
     CDS             4473..7097
                     /gene="alaS"
                     /locus_tag="ACFOCA_001038"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HFC6987771.1"
                     /translation="MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQ
                     FKDVFLGFDKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFK
                     RDAIHFAWEFLTSPEWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKG
                     AKYASDNFWQMGDTGPCGPCSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFN
                     RDEQGNMNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSME
                     EPSLKVIADHIRSCSFLIADGVLPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLV
                     ADLVKEMGDAYPELKEKQVQIEEALKNEESRFAQTLETGMALLENALAKGSKKLDGEI
                     IFKLYDTYGFPYDLTADICRERNIELDEAGFEREMEAQRARARAAQSFKANAQLPYDG
                     QDTEFKGYSERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY
                     IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH
                     LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAV
                     NAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKIIS
                     EGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA
                     LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNA
                     VILLAAVNDGKVSLCAGVSKALTGKVKAGDLVKFAAEQVGGKGGGRPDLAQAGGTDAG
                     KLPAVLDSVKDWVGAKLV"
     gene            complement(7186..8208)
                     /locus_tag="ACFOCA_001039"
     CDS             complement(7186..8208)
                     /locus_tag="ACFOCA_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6987772.1"
                     /translation="MLTKKEFEKFLDEVCTVLRQEAKNAPFKSQDIFENRVRALCIAK
                     IPAYADIVINPEPVPQIFPDVPIGEYGVEVKFTLKDTWRSVANSIQEKNKADGVQHIY
                     VVFGKMGGIPDVKWQLYEDSVIHVRTSHVPRFEVEIESDRPSLFEGFGISYAEFADLD
                     MHEKMEYIRKYARNRLKEGERLWWIEDIDAVDSHDLPLEVRLYTSLPQEEKIRLRAEA
                     ALVSPRIVCSGRAKHKYDNAVLYLITYRGVLCHQARDLFSAGSVANSAEDYRGGNYVE
                     KSLKLIEHEIEKAALEMDDALIVEYWGESVPTEKRLEYWIKMLDDLADGWIPSESLFN
                     GRYKAK"
     gene            complement(8262..9413)
                     /locus_tag="ACFOCA_001040"
     CDS             complement(8262..9413)
                     /locus_tag="ACFOCA_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6987773.1"
                     /translation="MTEFARKNWNKLAGDAIKAKMHEHGIGFIQLSELFLEQGESETA
                     NAICNKVNRGTFSHAFYLKCMELMTKQEKQEDREKKYKIISLFSGCGGMDLGFLGGFE
                     FLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGDIWQHLDEIPTSADIIIGGF
                     PCQDISINGKGAGISGSRSGLYKAMLSAVERVRPKIFVAENVKGLLMKHHRKDLETVL
                     SDFRNLGYQVDYYLLNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQA
                     IGDLVDKVEDEIANHIWSRAEKSPDQGSRKLDAERAGYTIRAECHGNIQWHYELPRRI
                     SMREAARIQSFPDNFIFQAKLRATERQIGNAVPPVLGWHIAAAVSKALK"
BASE COUNT         2505 a         2674 c         2391 g         2529 t
ORIGIN      
        1 cttacccctt gtttctcaaa tgccgtctga aaaaacggct gcatatgttg tctacaaaat
       61 atcgggaagc ataacaggca aaatgccgtc tgaaatattt tcagacggca tttcttatcc
      121 gaaacggatt atttttgcgt ttcaaccgct tccaatgcac gcagggcata agtgtaagcg
      181 gcaccggcat tcagggcgat ggcggttgcc aatgcgcctg cgatttcgct gtcggtcgca
      241 ccggctttgg cggcagcggc ggcgtgaacg ctgatgcagc tctcgcaacg agtggtaatg
      301 gcaacggcga tggcaatcag ttcgcgcgtt ttggcatcaa gtgcttcggc ggcggcggcc
      361 tgttccaatg cgccgtaggc ctgcagcatt ttaggatgcg ccttacccag ctcgccgaac
      421 gattttttaa ccaatgcggt atgttctttc caatctttaa acattttctt ttcctttctc
      481 ttgcgtttaa ccctgatacg cgcttgcgta tctgttttcg atgtgcgtat tattgcaatt
      541 attcagttgt gtttctcgtt taatcatctc attttatggt tcaaaaagat ttatggacat
      601 tctggacaaa ctggtcgatt tcgcccaatt gacgggcagt gtggatgtgc agtgcctttt
      661 gggcggacaa tggtcggtac ggcatgaaac cttgcaacgc gaaggattgg tacacattgt
      721 tacatcgggc agcggctatc tctgcatcga cggcgaaact tccccgcgtc cggtcagtac
      781 aggggatatt gtatttttcc cgcgcggctt gggtcatgtg ttgagccacg acggaaaatg
      841 cggagaaagt ttacaaccgg atatgcggca gcacggtgcg tttacggtca agcagtgcgg
      901 caacggacag gatatgagcc tgttttgcgc ccgtttccgc tacgacaccc acgccgattt
      961 gatgaacggg ctgcctgaaa ccgtttttct gaacattgcc catccgagtt tacagtatgt
     1021 ggtttcaatg ctgcaactgg aaagcaaaaa acctttgacg gggacggttt ccgtggtcaa
     1081 cgcattgtcg tctgtcctgc tggtgcttat cctgcgcgcc tatctcgaac aggataagga
     1141 tgtcgaactc tcgggcgtat tgaaaggttg gcaggacaaa cgtttgggac atttaatcca
     1201 aaaggtgata gacaaaccgg aagacgaatg gaatgtcgac aaaatggtgg cggctgccaa
     1261 tatgtcgcgc gcgcaactga tgcgccgttt caaaagccgg gtcggactca gcccgcacgc
     1321 ctttgtgaac catatccgcc tgcaaaaagg cgcgttgctg ctgaaaaaaa acccggattc
     1381 ggttttgtcg gtcgcactgt cggtaggctt tcagtcggaa acgcacttcg gcaaggcgtt
     1441 caaacggcaa tatcacgttt cgccgggtca ataccggaaa gaaggcgggc aaaaataaat
     1501 cggggcttca aacgcaaatg ccgtctgaaa aggctttcat acagcatttg cgtaccgcgt
     1561 catttcaagg gctgcatctt catcacttcc atcaaaaagt tggtaaatgc ggggttgttg
     1621 ggtttgacat ccatattttt ccaacgctgc tgccagccgc gcaaggcatt ctggatatac
     1681 agcttggact gttccgtatt gattgcgccc cgctggctgt ctatcgccga acgcaggtag
     1741 atttcataca tactgtcatc gacggcattg cgtccgacca ggcgttttct gaagttgttc
     1801 agatattgcg ccgcctgaac cttggtcatt ttaccgatac ccacctgata gcccaagcgc
     1861 gtcgcttcat cgctgatttt ggcaacatcc gtccaatgcg aagaggcaag gcggaaacct
     1921 tttgcaggtg cttccgtttt gacggtattg ataggattca cggggatttc cgtcaatgtg
     1981 ggcacataaa tagactggca gccggaaaga actgccacaa tggaaagagg gataaggtat
     2041 tttttcatgc ccccattata atcaagtttg ccttgagaaa acaaattgtt cggcaagaaa
     2101 aataaaattt cggcatcaga agcaggcaaa aacacattcc acaagccttg ccgcaaggtt
     2161 tacaatccga ccgtccttat cgcaacgacc gtttatggat accgcaaaaa aagacatttt
     2221 aggatcgggc tggatgctgg tggcggcggc ctgctttacc attatgaacg tattgattaa
     2281 agaggcatcg gcaaaatttg ccctcggcag cggcgaattg gtcttttggc gcatgctgtt
     2341 ttcaaccgtt gcgctcgggg ctgccgccgt attgcgtcgg gacaccttcc gcacgcccca
     2401 ttggaaaaac cacttaaacc gcagtatggt cgggacgggg gcgatgctgc tgctgtttta
     2461 cgcggtaacg catctgcctt tggccaccgg cgttaccctg agttacacct cgtcgatttt
     2521 tttggcggta ttttccttcc tgattttgaa agaacggatt tccgtttaca cgcaggcggt
     2581 gctgctcctt ggttttgccg gcgtggtatt gctgcttaat ccctcgttcc gcagcggtca
     2641 ggaaacggcg gcactcgccg ggctggcggg cggcgcgatg tccggctggg cgtatttgaa
     2701 agtgcgcgaa ctgtctttgg cgggcgaacc ctgctggcgc gtcgtgtttt acctttccgt
     2761 gacaggtgtg gcgatgtcgt cggtttgggc gacgctgacc ggctggcaca ccctgtcctt
     2821 tccatcggca gtttatctgt catgcatcgg cgtgtccgcg ctgattgccc aactgtcgat
     2881 gacgcgcgcc tacaaagtcg gcgacaaatt cacggttgcc tcgctttcct atatgaccgt
     2941 cgttttttcc gccctgtctg ccgcattttt tctgggcgaa gagcttttct ggcaggaaat
     3001 actcggtatg tgcatcatca tcctcagcgg cattttgagc agcatccgcc ccactgcctt
     3061 caaacagcgg ctgcaatccc tgttccgcca aagataaaaa atgccgtccg aacatccttc
     3121 agacggcata tcgggcttta tttccccgcc ttcacatcct gccactggcg caccataaac
     3181 ttcaatgccg ccggctggat aggcaccatg ataaagctgt ttttcaaatc ctcctcggtt
     3241 gggaaaatcg tattgtcgtt tttaaattcg tcttccatca gctcacgcgc cggcttgctc
     3301 gaaggcgcat aagtaacgaa attgccgttt ttcgccgaca cttccgggtc gaggaagtcg
     3361 ttgatgtatt tgtgcgcgtt ggcgacgttt ttcgcatctt tcggaatcac gaaagaatcc
     3421 acccaaatcc ccacgccctc tttgggcatc atcacgcgga ttttttcctt gccgcccgct
     3481 tcttcggcac ggcgtttggc gatgttcaaa tcgccgccga aaccgattgt tacgcaggta
     3541 tcgccgcgcg ccaaatcatc gataaagccg gacgaagtaa agcgtttgat attggggcgg
     3601 tttttcttga gcagggcggt tgcctccctg atgtcttccg tattgctgct gttcgggttt
     3661 ttacccaaat agttcaacac cataggatag atttccgccg cgctgtctaa ataactgata
     3721 ccgcattgtt tgagtttgga cgtgtattcg gggtcgaaca ccaaatccca ctggttgtcc
     3781 ggcagcttgt ccgtacccaa agcctttttc acgcgttcgg tattgatggc gaaggtattt
     3841 gtcccccaat aaaacggcac ggcgtattcg tggccgggat cgaccccgtc catcagcctc
     3901 atcatttcgg gattgaggtg tttataattg ggaatcagcg atttatcgat tttctgatac
     3961 gcacctgcct taatctgcct gcccacaaac gcattggacg gcgcgacaat gtcgtaaccg
     4021 gattttccgg tcagcacctt gctttccagc gtttcatcgc tgtcgtacac atcataagta
     4081 accttgatgc cgtttttctt ttcaaaatcg gcaacggttt ccggatcgac gtattccgac
     4141 cagttgtaaa ttttcaatac gtttcggttt tccgccggcg ccggtttttc ggcaggcggt
     4201 ttgtccgaac cgccgcacgc tgcaagcagc aaagcagtca ggacggcgag tggcagatgt
     4261 ttggccatta tcattccttg catatcgggt tggagaaagc ggtcattata gccgatattg
     4321 gcaacagggc ttcagacggc attcaaaatc ccgccacacc cttccgaaaa ccgccgcttc
     4381 catagctaga aacagggatt tgcggtaaga taccgccgtt cgttttccct gcttttacca
     4441 tgacaagaca tttgagagac attgaaaaaa ttatgaaaac ctccgaactg cgccaaaaat
     4501 tcctaaaatt ttttgaaacc aaaggccaca ccgtcgtccg ctcttccagc ctcgtgccgc
     4561 acgacgaccc gaccctgctg tttaccaacg cgggcatgaa ccagtttaaa gacgtattct
     4621 taggtttcga caaacgcccg tacagccgcg ccaccaccgc gcaaaaatgc gtacgcgcag
     4681 gcggcaagca caacgacttg gaaaacgtcg gctacaccgc ccgccaccac accttctttg
     4741 aaatgatggg caacttctcc ttcggcgact acttcaagcg cgacgcgatc cacttcgctt
     4801 gggaatttct gacttccccc gaatggctca atatccccaa agacaaactg ttggcgaccg
     4861 tttacgcgga agacgacgaa gcctacaaca tctggttgaa cgaaatcggt atgccgtccg
     4921 agcgcatcgt ccgcatcggc gacaacaaag gcgcgaaata cgcgtccgac aacttctggc
     4981 aaatgggcga caccggccct tgcggcccct gctccgaaat tttctacgac cacggcgaag
     5041 aaatttgggg cggcattccc ggcagccccg aagaagacgg cgaccgctgg atcgaaattt
     5101 ggaactgcgt attcatgcag ttcaaccgcg acgaacaagg caatatgaat ccgctgccca
     5161 agccgtccgt cgataccggc atgggcttgg aacgcatggc cgccgttatg cagcatgttc
     5221 acagcaacta cgaaatcgac ttgttccaag acctgctcaa agccgttgcc cgcgaaaccg
     5281 gcgcagcttt cagcatggaa gaaccaagcc taaaagtcat cgccgaccac atccgctcct
     5341 gctcattcct gattgcagac ggcgtattgc cttccaacga aggccgcggc tacgtattgc
     5401 gccgcattat ccgccgcgcc gtgcgccacg gttacaaact gggtcaaagc aaaccgttct
     5461 tccacaaact ggtggccgat ttggtcaaag agatgggcga tgcctaccct gaattgaaag
     5521 aaaaacaagt tcaaatcgaa gaagcgttga aaaacgaaga aagccgtttt gcccaaactc
     5581 tggaaaccgg tatggctttg ttggaaaacg cgcttgccaa aggcagcaaa aaactcgacg
     5641 gcgaaatcat cttcaaactc tacgatacct acggtttccc atacgacttg actgccgaca
     5701 tctgccgcga acgcaatatc gaactggacg aagcaggctt cgagcgcgaa atggaagccc
     5761 aacgcgcacg cgcacgcgcc gcacaaagct tcaaagccaa cgcccaactg ccttatgacg
     5821 gtcaagacac cgagtttaaa ggttatagcg aacgccaaac cgaatccaaa gtcctcgccc
     5881 tctacaaaga cggcgagcaa gtcgacgaat tgaacgaagg cgacagcggc gcagtcgtca
     5941 tcgactttac cccgttctat gcagaatccg gcggccaagt cggcgatgtc ggctatatct
     6001 tctcaggcga aaaccgcttt gaagtacgcg atacccaaaa aatcaaagcg gccgtattcg
     6061 gtcaattcgg cgtacaaact tcaggccgtc tgaaagtcgg cgacagcgtt accgccaaag
     6121 tggacgacga aatccgcaat gccaatatgc gcaaccacag cgcaacccac ttgatgcaca
     6181 aagccctgcg cgatgtattg ggcagacacg tcgaacaaaa aggctctttg gttaccgccg
     6241 aatccacccg tttcgacatt tcccatcccc aagcggtaac tgccgaagaa atcgccgaag
     6301 tcgaacgccg cgtcaacgaa gccgttttgg cgaacgttgc cgtcaacgcc gccattatga
     6361 gcatggaaga cgcgcaaaaa accggcgcca tgatgctctt cggcgaaaaa tatggcgacg
     6421 aagtacgcgt attgcaaatg ggcggtttct ctaccgaatt gtgcggcggc acgcacgttt
     6481 cacgcaccgg cgacatcggc ctcttcaaaa tcatcagcga aggcggtatt gccgcaggcg
     6541 tgcgccgtat cgaagccatc accggcctga acgcactcaa atgggcgcaa gagcaagagc
     6601 gtttggtgaa agacatcatt gctgaaacca aagcccaaac cgaaaaagac gtactggcga
     6661 aaatccaagc aggcgcggca cacgccaaag cattggaaaa agaattggca cgcgccaaag
     6721 ccgaactcgc cgtccacgca ggcgcaaaac tcttggacga cgcaaaagac ttgggcgcag
     6781 ccaaactcgt tgccgcccaa atcgaagccg acgcagccgc cctgcgcgaa atcgtaaccg
     6841 acctgaccgg aaaatccgac aacgccgtga ttcttttagc ggcagtaaac gacggcaaag
     6901 tctccctgtg cgccggcgta tccaaagccc tgaccggcaa agtcaaagca ggcgatctgg
     6961 ttaaatttgc agccgaacaa gtcggcggca aaggaggcgg cagaccagat ttggcacagg
     7021 cagggggcac ggatgccggc aaattgcccg ccgtgttgga tagcgtgaaa gactgggtcg
     7081 gcgcgaagct ggtttgatgt gggaaaggca gcctgaaagg gattcaggct gccttttgtg
     7141 ttaaagatgc cgtctgaaag atattttcag acggcctctg tcagtttatt tggctttata
     7201 cctaccattg aatagcgatt cagaaggtat ccagccatct gccaaatcat ccaacatctt
     7261 aatccaatac tctaggcgtt tttctgtcgg gacgctttct ccccaatatt cgacaattag
     7321 agcatcatcc atttccaaag cagctttttc aatttcatgc tcaatcaatt ttaaagattt
     7381 ttctacatag tttccgccac ggtagtcttc cgccgagttg gcaacgctgc ccgcactgaa
     7441 taagtcccgc gcctgatgac aaagcacacc gcgataggta atcagataca ggacggcatt
     7501 atcgtatttg tgcttcgccc tgcctgagca gacaatacgg ggggagacta atgctgcttc
     7561 agctcggagg cggatttttt cttcctgcgg cagggaagtg taaaggcgca cttccaaagg
     7621 cagatcatgg ctgtctactg cgtcaatgtc ttctatccac cataaccgct cgccttcttt
     7681 cagcctgtta cgggcatatt ttcggatata ttccattttt tcatgcatat ccaaatcggc
     7741 aaattcagca taggaaatac cgaaaccctc aaacagagac ggtcgatcag attctatttc
     7801 tacctcaaag cgcggaacat gcgatgtgcg gacatgaatt acgctatctt cgtaaagttg
     7861 ccatttcaca tcgggaatgc cccccatttt tccgaatacc acatagatat gctgtacacc
     7921 gtcagctttg tttttctctt ggatactgtt tgctacgctg cgccaagtat cttttagcgt
     7981 gaatttgact tctacaccat attcccctat tggaacatcg gggaaaattt gcggcacagg
     8041 ttcaggattg ataactatgt cagcataagc gggaattttt gcaatgcaca gcgcacgaac
     8101 tctgttttca aaaatatctt gggatttgaa aggtgcgttt tttgcctctt gcctcaatac
     8161 ggtgcaaacc tcgtctaaaa acttctcaaa ctcctttttt gtcagcataa tgcattacca
     8221 cttaaaaata taaagtagta attttatctt atttaacagg gttatttaag tgccttacta
     8281 acggcggcgg cgatgtgcca ccctaaaaca ggagggacgg cgttgccaat ttgccgttct
     8341 gtggcacgca attttgcctg gaaaataaaa ttgtcgggaa acgattggat gcgcgccgcc
     8401 tcacgcatgg agatgcggcg gggtaattcg taatgccact gtatgtttcc atggcattct
     8461 gccctaatag tgtagcccgc cctttcggca tccaattttc gactaccttg atcggggctt
     8521 ttttctgctc tactccaaat atggttggca atttcgtctt ctactttgtc gaccaaatcg
     8581 cctatagcct gtctagctgt tacatagctg ttgctggtat ttgttttttc aatctgtatt
     8641 tcgggaattt caggtagcct tccaacgatg ataactcgct cccgagtctg tggaacaccg
     8701 taatcggctg cattcagcaa gtagtaatct acctgataac ccaaattgcg aaaatctgaa
     8761 agcactgttt ccaaatcttt ccgatgatgc ttcatcagta gccctttgac attttcagca
     8821 acaaatattt tggggcgaac gcgttcaaca gcagacaaca tggctttata cagcccgctg
     8881 cggctgcctg aaatacctgc acctttacca ttaatagaaa tatcctgaca aggaaagcca
     8941 ccgataatga tgtctgcgct agtgggtatt tcatccaaat gctgccaaat atcaccatgt
     9001 acaatgtgat ttcctaagtt gtggcggtag gttctaacag cgtgttcgtc gatttcgttc
     9061 gcccaaataa tatcaaaatc atgtttgtca taagtacggt ttaaaaactc aaagcccccc
     9121 agaaaaccca aatccattcc gccacaaccg ctaaataaag aaataatttt atattttttt
     9181 tcgcggtctt cttgcttttc ctgtttggtc attaactcca tacatttaag ataaaaagca
     9241 tgggaaaaag tacctctatt tactttgtta caaattgcat ttgccgtttc actttcccct
     9301 tgctccaaga ataattctga taattgtata aagccaattc catgctcatg cattttggct
     9361 tttatggcat ctccagctaa cttgttccaa ttttttcgtg caaattcggt catggttaat
     9421 ctttcagtca ttcataaatg acattatttt agcgtttttt ataatttaag ccaagattta
     9481 aaatctacct ttaggtttac aggccgtctg aaaacaaaaa tctcgttttc agacgacctt
     9541 tttccgctaa aatcccccta ccgtccaacc cgaaacaagg agaaccatca tgcaagttcc
     9601 tacttccgcc atcatcaacg gcgaatttgc cgacaaatac ggcaaacgcg gcagcaagcc
     9661 gtagccagca cccctgtcaa ccgcgtgcgt ggctagacca cacaccctac cactgcgggc
     9721 gacgcaaacc ttaagattga ggtgtagggt gtgtgcggta cgcacgcacg cggtttttgt
     9781 tactaccgaa tgattccaaa ccatgccgta atccagtcag cagcaaacgc tgcttgggtc
     9841 atgtaccaac aaaactcaat atcaaaggcc gtctgaagaa taattttcag acggcttctc
     9901 tctatcaaaa gcagcctgca cattcaaaaa tcgaagtgca ggctgctttt tgtgatgatt
     9961 ggaaaaaaca cacactattt gagacctttg caaaattccc caaaatcccc taaattccca
    10021 ccaagacatt taggggattt ctcatgagca ccttcttcca gcaaaccgcc caagccatga
    10081 ttgccagaca catcgaccg
//
LOCUS       DAXIFS010000060         9980 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.060, whole genome shotgun sequence.
ACCESSION   DAXIFS010000060 DAXIFS010000000
VERSION     DAXIFS010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9980
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.060"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(109..1782)
                     /gene="recN"
                     /locus_tag="ACFOCA_001041"
     CDS             complement(109..1782)
                     /gene="recN"
                     /locus_tag="ACFOCA_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HFC6987774.1"
                     /translation="MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGL
                     LLGDKADYSQVRSGAKEAQLSALFDISHLPVLKAELYEQGLLNDGEEELSIRRIIDAK
                     GKSRSFINNQAATLAQLKSVGSQLIDIHGQNAHHSLNQEAAQRELLDAFAGSREQAET
                     VRQLYQNWANAKKALQEAQEHADAVIIERERLEWQFNELNQLDIKQGEWEALSQSHDS
                     LAHSAELLQAAEEVGSKIDGDNGIQRHIYQCQKLLANLQNIEPRFAESLNMLASIEAE
                     LGEISANMRDVAGRSDINPNELAAQEQRMGELMGMARKYRIEPEELPAKLAEIEERLQ
                     SLQAAADLDALEHNVAHNFAEYQEAAHILSAMRHQAAERLSGETTEHMQHLAMKGARF
                     DIALLPSSPTSHGLEQVQFQVAANKGNPPRPLNKVASGGELARISLALQVVASQYTQV
                     PTLIFDEVDTGIGGGVAEMVGKALRALGRKHQVLAVTHLPQVASCGENHWRVRKHSEG
                     EQTVSEISILDEIQRVEEVARMLGGEVITDTTRQHAAELLQLASKNSLF"
     gene            complement(1966..2568)
                     /locus_tag="ACFOCA_001042"
     CDS             complement(1966..2568)
                     /locus_tag="ACFOCA_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0051304 - chromosome separation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HFC6987775.1"
                     /translation="MTDKISPDALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVL
                     AQLKTRWQDRALQLVHTQEGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQ
                     QPVTRGDIEGIRGVAVSQNVMQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLD
                     GLEELPPLTELGELVLPDLMEMPPTDEEEPEAVPSDTLPN"
     gene            complement(2669..3610)
                     /gene="ylqF"
                     /locus_tag="ACFOCA_001043"
     CDS             complement(2669..3610)
                     /gene="ylqF"
                     /locus_tag="ACFOCA_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HFC6987776.1"
                     /translation="MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLL
                     AQLSKGKPKLKILNKQDLADPERTKVWLDHYNSRPDTRAIALDSSETGAHGKITQACR
                     AMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
                     FWLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQER
                     YQADKDPSSHWDENVWLEWIAKKRGAVLSGGRINYQKAAENILTDFREGKIGRITLET
                     PNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA"
     gene            complement(3691..4545)
                     /gene="rapZ"
                     /locus_tag="ACFOCA_001044"
     CDS             complement(3691..4545)
                     /gene="rapZ"
                     /locus_tag="ACFOCA_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HFC6987777.1"
                     /translation="MKIVLISGLSGSGKSVALRQMEDSGYFCVDNLPLEMLPALVSYH
                     IERADETELAVSVDVRSGIDIGQAREQIASLRGLGHRVEVLFVEAEEAVLVRRFSETR
                     RGHPLSNQDMTLLESLKKEREWLFPLKEIAYCIDTSKMNAQQLRHAVRQWLKVERTGL
                     LVILESFGFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQEM
                     VDDIERFVTHWLPRLEDESRSYVTVAIGCTGGQHRSVYVVEKLARRLKGRYELLIRHR
                     QAQNLSDR"
     gene            complement(4526..5488)
                     /gene="hprK"
                     /locus_tag="ACFOCA_001045"
     CDS             complement(4526..5488)
                     /gene="hprK"
                     /locus_tag="ACFOCA_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HFC6987778.1"
                     /translation="MPSISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALV
                     GHLNFIHPNQIQVVGLAESEYLNRLESGETGYQFGNLFDISMSLVIVANGLPVSPGLR
                     DYCHKNDIPLLTSKLESPYLMDVLRIYLQRTLAASSVKHGVFLDVFEIGVLITGHSGL
                     GKSELALELISRGHSLIADDAVELFRIGPETLEGRCSPMLRDFLEVRGLGILNIRHIF
                     GETSIRPKKILQLIINLVEADDEYMKQLDRLSIRTETESILNVNVRSVTLPVAVGRNL
                     AVLVEAAVRNYILQLRGKDSTREFLERHQTQLKENEQNHENRPD"
     gene            complement(5492..5941)
                     /gene="ptsN"
                     /locus_tag="ACFOCA_001046"
     CDS             complement(5492..5941)
                     /gene="ptsN"
                     /locus_tag="ACFOCA_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HFC6987779.1"
                     /translation="MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADV
                     FECLFAREKLGSTGLGQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFI
                     LLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEARAILTEE"
     gene            complement(6126..7016)
                     /gene="ubiA"
                     /locus_tag="ACFOCA_001047"
     CDS             complement(6126..7016)
                     /gene="ubiA"
                     /locus_tag="ACFOCA_001047"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HFC6987780.1"
                     /translation="MNPKSPLFLRLSDRLDVYLRLMRADKPIGTLLLLWPTYWALWLA
                     SDGIPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVKKKEAL
                     LLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIP
                     MAFAAVGNSVPVEAWILFTANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFGRYDIA
                     AVMLCHGGFTLLMAVLGAVIGAAWAYWTAIPIVLLLQYRQYAAIKSRVRQICFETFLA
                     NNRIGWVWFTAIFAHTFFAK"
     gene            complement(7046..7522)
                     /locus_tag="ACFOCA_001048"
     CDS             complement(7046..7522)
                     /locus_tag="ACFOCA_001048"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HFC6987781.1"
                     /translation="MEHLFGKWLPDLPAAVSDGIDLPMSRLLKARSLTAALRALPHTF
                     SVELLKLGELETECGGRLVREVLLKLDRIPVVEARSECRIGSAFWQNILDCGTRPLGE
                     RLFQADLEGARSAFEFAVSGEGCGRYFAARRSRFSRHGEEMLLTEYFLPELKRFIG"
     gene            complement(7537..8184)
                     /gene="bioD"
                     /locus_tag="ACFOCA_001049"
     CDS             complement(7537..8184)
                     /gene="bioD"
                     /locus_tag="ACFOCA_001049"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFC6987782.1"
                     /translation="MKGVYFVSGIDTDIGKTVATGMLAKQLLQQGKSVITQKPVQTGC
                     QDIAEDIAVHRKIMGIPMQEADKRRLTMPEIFSYPASPHLAARLDGRALDLDKIRTAT
                     QELAAQYEIVLVEGAGGLMVPLTEKLLTIDYIQQQAYPVILVTSGRLGSINHTLLSFA
                     ALKQYGIRLHSLVFNHIHDSRDAHIAQYSLSYLKCRLKADFSEAEWMELAKTDAV"
     gene            complement(8181..9482)
                     /gene="bioA"
                     /locus_tag="ACFOCA_001050"
     CDS             complement(8181..9482)
                     /gene="bioA"
                     /locus_tag="ACFOCA_001050"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFC6987783.1"
                     /translation="MPSEHQHTSSLLDFDRTHLLHPYTSMTDPLPVYPVKRAEGVFIE
                     LADGTRLVDGMSSWWCAIHGYNHPVLNQAVETQIKQMSHVMFGGLTHEPAVELGKLLV
                     GILPQGLDRIFYADSGSVSVEVALKMAVQYRQVRGLTAKQNIATVRRGYHGDTWNAMS
                     VCDPETGMHHIFGSALPQRYFVDNPTSRFDDEWDEADLQPVRALFEVHHADIAAFILE
                     PVVQGAGGMYFYHPQYLRGLRDLCDEFDIVLIFDEIATGFGRTGKMFACEHAEVVPDI
                     MCIGKGLSGGYMTLAAAITSQKVTETISRGEAGVFMHGPTFMANPLACAVACASVKLL
                     LSQDWQANIRRIESILKGRLKAAWDIRGVKDVRVLGAIGVIELDKGVDMARFQADCVA
                     QGIWVRPFGRLVYLMPPYIISDGVLTKLADKTVQILKEHSK"
     gene            complement(9695..9934)
                     /locus_tag="ACFOCA_001051"
     CDS             complement(9695..9934)
                     /locus_tag="ACFOCA_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987784.1"
                     /translation="MNVWDIWGRMVEIYHKYKKPCLVLAVDFVMGMVFIEPNEELCIG
                     RCYAPMSESPDFANAVAMAVAMICIVWIAVLSMTD"
BASE COUNT         2312 a         2735 c         2528 g         2405 t
ORIGIN      
        1 gcacaatcac ttgttcaagt gattaagaaa gcgtgataat acggatttat ctgagttctg
       61 tctattgttt tagactttta tttttagtta ttttttaact gattgatttt aaaataaact
      121 atttttcgac gcaagttgca gcaattctgc cgcatgttgc cgcgtcgtat cggtaatgac
      181 ttctccgccc aacatacggg caacctcttc gacccgttgg atttcatcca atatactgat
      241 ttcgctgacg gtttgctctc cctcgctgtg cttgcgcacc cgccagtggt tttcgccgca
      301 ggatgcgact tgcggaagat gggtaacggc aagcacctga tgttttctgc ccaacgcacg
      361 taatgccttg ccgaccattt cagccactcc ccctccaata ccggtatcga cctcatcaaa
      421 aatcagggtg ggaacttggg tatattggct ggcaacaacc tgtaaggcaa ggctgatacg
      481 cgccaattcg ccgccggagg caactttatt cagcggacgg ggcggattgc ctttgttggc
      541 ggcaacttga aactgtactt gctccaagcc gtgcgacgtc ggggaagacg gcagtagggc
      601 aatgtcaaaa cgcgcacctt tcatggcaag gtgttgcata tgctcggtcg tttcgccgct
      661 caaacgctct gccgcctgat ggcgcatggc agaaaggatg tgggcagctt cctgatattc
      721 ggcaaaattg tgggcaacat tatgctcgag cgcgtccaaa tcggcggcag cttgcaggct
      781 ttgcaggcgt tcttcgattt ctgccaactt ggcaggcaac tcttcaggct cgatccggta
      841 tttccgcgcc atccccatca gctcgcccat gcgctgttcc tgtgccgcca attcattggg
      901 attgatgtcg ctgcgacctg ccacatcgcg catattggca ctgatttcgc ccaattcggc
      961 ttcgatgctt gccaacatat tcaggctctc ggcaaagcgc ggctcgatgt tttgcagatt
     1021 ggccaatagt ttttgacatt gatagatatg gcgttggatg ccgttgtcgc cgtcaatctt
     1081 gcttccgact tcttcggcag cctgcaacag ctcggcagaa tgggcaaggc tgtcgtggct
     1141 ttggctgagg gcttcccatt cgccttgttt aatgtccaac tgattcagtt cgttaaactg
     1201 ccattccaga cgctcccgct cgataatgac ggcatcggcg tgttcctgcg cctcttggag
     1261 ggcttttttc gcattggccc aattttgata aagctgcctg acggtttccg cctgctccct
     1321 gctacccgca aatgcgtcca acaattcgcg ctgggcggct tcctgattaa gcgaatgatg
     1381 ggcgttttgc ccgtggatgt cgataagctg gctaccgacg gatttgagtt gcgccaaggt
     1441 agcggcctga ttgttgataa agctgcggct tttgcctttg gcatcgataa tgcggcggat
     1501 actgagttct tcttctccgt cgtttaaaag cccctgttca tacaattctg cttttaaaac
     1561 aggcaaatgg gaaatatcga acaatgccga caactgcgct tcttttgcac cgctgcggac
     1621 ttggctgtaa tcggctttgt cgcccaacag cagaccaatc gcatccaaag taatggactt
     1681 gcccgcgccg gtttctccgg tcaatacggt aaagccgctt tgaaaatcca gattcagatt
     1741 ttcaacaatg acaaaatcac gcaaagaaag tgttagaagc attgtgagga ttccttagca
     1801 attctaccga caaaagcaat atcaacttta gatatacgaa ttataactaa gattttttta
     1861 aattaaaaat aagttttcct taattttgct tagtacttgt ttttatctgc ttatttgttg
     1921 caatgccgtc tgaagcaatg tgcgtttcag acggcatttg gaatttcagt tgggcagggt
     1981 atcggacggt acggcttccg gctcttcttc atccgtaggc ggcatttcca ttaaatcggg
     2041 taaaaccagt tcgcccagtt cggtcagcgg cggaagttct tccagaccgt ccaagcgcaa
     2101 atcgctgaga aaagttgccg ttgtcgccca caatgcgggt tttcccaatg tgtcccgatg
     2161 tccgatgact tcaatccacc cccgatcctg caaggtctgc atcacgttct gcgacaccgc
     2221 cacgccgcgt atgccctcga tgtcgccgcg cgttacgggc tgctggtagg cgataatcgc
     2281 cagtgtttcc atcacggcgc gggagtaacg cggcgcacgc tgttcttgca ggctgcccag
     2341 ccgctcgaat gccgtctgaa caatctgaaa acgccagccc tcttgcgtat gcaccagttg
     2401 caacgcccta tcctgccaac gcgttttcaa ctgcgccaac acatcaatca gtttgtcctg
     2461 cgacagtggc ggcacacaca attcgcgcat agatttttcg gtcagcggtt cggtttgggt
     2521 cagcagtgcg gcttcaatta gtgcgtcggg agaaattttg tcggtcatac gggtatccgt
     2581 gctgaaacgg catgggtttg gatatgccgt ctgaaatcgg ttggagtaga gagaagctgc
     2641 ctgaaaaata tttttcagac ggcattcttt atgcttccga aggcttctgc cctttacgct
     2701 ctgcttttct ggcttcgcgt atggctttga gttcggcttc tttctgacgg gcttttttga
     2761 gccaagtttc ccattggttc ggcgtttcga gggtgattct gccgattttg ccttcacgga
     2821 agtcggtgag gatgttttcg gcggcttttt ggtagttgat ccgtccgccg ctgaggactg
     2881 cgccgcgttt tttggctatc cattcgagcc aaacgttttc gtcccagtgg ctgctggggt
     2941 ctttgtcggc ttggtagcgt tcttgcaaca tagggaggta gtggcggcgg aggtagtcta
     3001 aaagttcgag ggcgacttct tcttcgtcca acgcgttgcg tccgactgcg ccgccggcgg
     3061 caaggttgta gccgccttct tcgacgatga ttttcggcca cagcattccg ggggtgtcgt
     3121 agagccagaa gtcgtcggca aggaaaaggc gttgttcggc tttggtgatg ccgggttcgt
     3181 tgccggtttt ggcggatttt ttgcctatca tgccgttgat gagggtggat ttgccgacgt
     3241 tgggaatgcc gcaaatcaag acgcgcaagg gtttgtctat gccttgccgg tggggaatca
     3301 tcgcgcggca ggcttgggtg attttgccgt gtgcgccggt ttcggaggaa tcgagggcaa
     3361 tggcgcgcgt gtcggggcgg ctgttgtagt ggtcaagcca gacctttgtg cgttcggggt
     3421 cggcaagatc ttgtttgttt aggattttaa gtttgggttt gcctttggaa agctgggcaa
     3481 gcagggggtt ttcgctggag gcgggcatac gcgcgtccag catttcaatc accatatcaa
     3541 cgctttttgc acgctcggcg atggcttttt tcgccttgtt catatggccg ggaaaccatt
     3601 ggattgccat gtctgttctt tcttttcaat atttgaaatg ccgtctgaaa cggaggacgg
     3661 ggtttcagac ggcataatgg tttgacggaa ttagcggtct gacaggtttt gcgcctgtct
     3721 gtgccgtatc agcaattcat aacgcccttt caaccttcgg gcgagttttt cgacaacata
     3781 gacggaacgg tgctgcccgc cggtacagcc gatggcgacg gtaacgtagc tcctgctttc
     3841 atcctccaaa cgcggcagcc aatgcgtaac aaacctttcg atgtcgtcaa ccatttcctg
     3901 cacaagcggc tgtccgtcca aataatccca aacgggcttg tccataccgg tgtaaggcct
     3961 caactcggga tcgtaatacg ggttgggcag actgcgcata tcgaacataa aatccgcgtt
     4021 gtttggcaca ccgtatttga acccgaagga ctccaaaatc accagcagcc cggtacgttc
     4081 gaccttcagc cactgccgga ctgcatggcg gagctgttgg gcattcatct tggaagtgtc
     4141 gatacaatag gcgatttctt taagcgggaa cagccattcc cgttctttct ttaagctttc
     4201 caacaaggtc atatcctgat tactcagagg gtggcctcgc ctggtttcgg aaaaccggcg
     4261 gaccagcacg gcctcttccg cctcgacaaa caaaacttca accctgtgcc ccagtccgcg
     4321 cagagaggca atctgttccc gcgcctgtcc gatgtctatg ccggaacgca catcgacgct
     4381 gaccgccaat tcggtttcgt ccgcacgctc gatatgatac gacaccagcg cgggcaacat
     4441 ttccaagggc aggttgtcca cgcagaaata acccgaatct tccatttggc gcagtgcgac
     4501 ggatttgccc gaaccggaca acccgctaat caggacgatt ttcatgattc tgttcgtttt
     4561 ctttaagctg cgtctgatgg cgttccaaaa attcgcgcgt actatcctta ccgcgcaact
     4621 gaagaatata attgcgcacc gccgcttcaa ccaatacggc aaggttgcgt ccgaccgcga
     4681 caggcagcgt taccgaacgg acgttgacgt tgaggatgga ttcggtttcg gtacggatac
     4741 tcaaacggtc gagctgcttc atatactcgt cgtccgcctc gaccaaattg ataatgagtt
     4801 gcaggatttt tttggggcgg atggaagttt cgccgaaaat atggcggata ttgagtatcc
     4861 ccaagccgcg cacttccaaa aaatcgcgca gcataggcga acaccgccct tccagcgttt
     4921 ccgggccgat gcggaacagc tcgaccgcat cgtcggcaat caggctgtgg ccgcgcgaaa
     4981 tcagctccaa cgccaattcg ctcttaccca aacccgaatg tccggtaatc agcacgccga
     5041 tttcaaacac atcgagaaat acgccgtgtt tgacggacga tgccgccagg gtgcgttgca
     5101 ggtaaatccg caacacgtcc atcagatagg ggctttcgag tttggaagtc agcagtggaa
     5161 tatcgttttt gtggcagtag tcgcgcagtc ccggggaaac cggcaagccg tttgccacaa
     5221 tgaccaaaga catagaaatg tcgaacaggt ttccgaactg ataacccgtt tcccccgatt
     5281 cgaggcggtt cagatattcc gactccgcca aaccgaccac ttggatttgg ttggggtgga
     5341 tgaaattcag gtgtccgacc aaagcgagga cgggcttgtc cgcctctacg ccgatacggt
     5401 tgtccgcacc cgaattgccg gcggcccagg cgagttgcag tttgtattgg ttgtcgtcaa
     5461 acagtcggcg gacagagata ctgggcatat tttattcttc ggtcaggatg gcgcgggctt
     5521 cttccgcaga agaaaccgtc atcagcgatt cgcggatgct tttttgggaa aacttgccgg
     5581 ccagtttgga caatacctcc aaatgctcac ccgtcgcatt ttccggaacc agcaagataa
     5641 aaaccaggga aaccggtttg ccgtccggtg cgtcaaatcc gacgggttcg cgcgtgcgga
     5701 tgaacgcgcc cgtcgcctgc ttcacgccgg catgacggcc gtgcgggatg gcaacgccct
     5761 gccccaaacc ggtcgaaccg agtttttcac gggcaaaaag acattcgaaa acatcagcat
     5821 gggacaatga ggattcgcgt tccaaaagca ggcccgcttc ctcaaacagc ctttttttac
     5881 tgcccacctc catatccaaa acaatatggg acaaaggcaa aatttcgccg ataaggctca
     5941 taagcttctc ttttcagaca tcgcaaaaca gaaagattgt accgactgcc ggggcaaatc
     6001 tcaatcccgc atacggtacg ggctgacata acacagcgtt ttaaaaacat attttaacgc
     6061 ttttcggcac agatagaaat gccgtccaaa gcagtttacg gctcttcaga cggcattgcc
     6121 ctgccttatt tcgcgaaaaa cgtatgggca aaaatggcgg taaaccacac ccaaccaatt
     6181 ctgttgtttg ccaaaaacgt ttcaaaacag atttgccgga cgcggctttt gatggcggca
     6241 tattggcggt attgcagcag caggacgatg gggattgccg tccaatatgc ccatgccgca
     6301 ccgataaccg cccccaatac tgccatcagc agggtaaagc cgccatgaca cagcataacg
     6361 gcggcgatgt cgtaacgccc gaacgtgacg gcggaggttt tgatgccgat tttcaaatcg
     6421 tcctctttgt ccgccatggc gtaaacagtg tcgtaagcca gtgtccataa aacattggcg
     6481 gtaaaaagta tccatgcttc aacggggacg ctgttgccca ctgcggcaaa cgccatcggg
     6541 ataccgaagg aaaaggcaag cccgagatag agttggggaa tcggaaaaaa acgtttggta
     6601 aacgggtaag tcagcgcaag aaacagggcg ggcaggctca tcagccaagt cagatgattc
     6661 agcggaatca ggcacaatgc ggcaagcagg cacaaaaatg ccgtcagcag cagggcttct
     6721 tttttcttga ccctgccctg tgcgaacgga cggtttttgg tgcgctcgac agcaccgtca
     6781 aaatcgcggt cggcaaaatc gttgatgacg caaccggcac tgcgcattaa aaacgtaccg
     6841 attgtaaacg ccgccaatac cgccaaatcg ggaatgccgt ctgaagccag ccacaatgcc
     6901 cagtaggtcg gccacagtaa aagcagcgtc ccaatgggct tgtccgcccg catcaggcgc
     6961 aggtacacat ccaaacgatc ggacagtcgt aaaaataaag gggatttagg attcatattg
     7021 ccgcacagct tgaaaaaacg gtattttatc cgataaagcg tttcagttcg ggcagaaaat
     7081 actcggtcag cagcatttcc tcgccgtgac gggaaaaccg agaacgccgc gcggcaaagt
     7141 accgtccgca tccttcgccg gaaacggcaa actcaaacgc cgaacgcgcc ccttccaaat
     7201 cggcttgaaa cagacgctcg cccaaagggc gcgtgccgca gtccaaaatg ttttgccaaa
     7261 acgccgaacc tatccggcat tcgctccttg cctcaacaac agggatacgg tccagcttca
     7321 acaaaacttc gcgcaccagc ctccctccgc attccgtctc caattcgccc agtttcagca
     7381 gttccaccga aaatgtatgc ggcaaggcgc gcaatgcggc ggtcagcgac cgggctttca
     7441 ataaccggct catcggcagg tcgatgccgt ctgaaacggc ggcgggcaag tcgggcagcc
     7501 atttcccaaa taggtgttcc atatttttcc caatctttat accgcgtctg tttttgccaa
     7561 ctccatccat tccgcttcgg aaaaatcggc tttcagacgg catttcaagt agctcaggct
     7621 gtattgggcg atgtgtgcgt cgcggctgtc atgaatatgg ttgaatacga ggctgtgcaa
     7681 gcgaatgccg tattgtttga gcgcggcgaa actgagcagg gtgtgattaa tgctgccgag
     7741 ccgaccgctg gtaacgagga tgacgggata agcctgttgc tgaatataat caatggttaa
     7801 cagcttttcc gtcagcggaa ccatcaaacc gcccgcgcct tcgaccaaga ctatttcgta
     7861 ttgtgccgcc aattcttgcg tagcggtacg gattttgtcc aagtccaaag ccctgccgtc
     7921 cagacgggcg gcgagatggg gcgaggcggg atagctgaag atttcaggca tagtcagccg
     7981 ccgtttgtcg gcttcctgca tgggtatgcc catgattttg cggtgaacgg cgatgtcttc
     8041 ggcgatgtct tggcaaccgg tttgcacggg cttttgcgta atcacgcttt tgccctgctg
     8101 caacaattgt tttgccaaca taccggtggc gacagttttg ccgatgtccg tgtctatgcc
     8161 gctgacgaag taaacgcctt tcatttgctg tgttccttca agatttgcac ggttttgtcg
     8221 gcaagtttgg tcaaaacgcc gtctgaaata atatacggcg gcatcagata taccagcctg
     8281 ccgaacgggc gcacccaaat gccctgcgcc acgcaatctg cttgaaaacg cgccatatcc
     8341 acgcctttat ccagctcgat cacgccgatg gcacccaaaa cgcgtacgtc tttcacgccg
     8401 cgaatgtccc acgcggcttt cagacggcct tttaagatgc tttcaatgcg gcggatattt
     8461 gcctgccagt cttgagacaa aagcagtttg accgaagcgc aggcaacggc acacgccagc
     8521 gggtttgcca taaacgtcgg gccgtgcata aacacgcccg cttcgccgcg cgaaatcgtt
     8581 tcggtaactt tttgcgaagt gattgctgcc gccagcgtca tatagccgcc gctcaaaccc
     8641 ttgccgatgc acataatatc cggcacgacc tccgcgtgtt cgcaggcaaa catcttgccc
     8701 gtgcgcccga atccggtggc gatttcatca aaaatcaaaa cgatatcaaa ctcgtcgcac
     8761 aaatcgcgca atccgcgaag atactgcgga tgataaaaat acatgccgcc cgcgccctgc
     8821 acgaccggct ctaaaataaa ggcggcaata tccgcatgat gcacttcaaa caaggcgcgg
     8881 acaggctgca aatccgcctc gtcccattca tcgtcgaaac ggcttgtcgg gttatcgaca
     8941 aaataacgct gcggcaacgc gctgccgaaa atatggtgca tccccgtttc cggatcgcag
     9001 acggacatcg cgttccaagt atcgccgtga tacccgcgcc gcaccgtcgc aatattctgc
     9061 ttcgccgtca acccccgcac ctgccggtat tgcaccgcca ttttcaacgc aacttccacc
     9121 gaaaccgaac ctgaatccgc ataaaaaata cggtccaacc cctgcggcaa aatcccaacc
     9181 aacaatttac ccagctccac cgcaggctca tgcgtcaaac cgccgaacat cacatgcgac
     9241 atttgtttaa tctgcgtctc aaccgcctga ttcaaaacag gatgattgta accgtgtatc
     9301 gcacaccacc aggacgacat cccgtcaacc agccgcgtgc cgtccgccaa ttcgataaac
     9361 accccttctg cacgtttgac aggataaacg ggaagcggat cggtcatgga agtataggga
     9421 tggagcagat gggtacggtc gaaatcaagt aatgatgatg tgtgttgatg ttcagacggc
     9481 ataagtttct ctcttttctt attgctgcat tcaaacgcaa acgcgtattc tactccgaca
     9541 gaccgtttcc cacacctctc catccgtttc gggcgcaaaa ccgcgaaaca aatcgtccgc
     9601 agtataagcg cacaccgttt cgcattcccc aagcccgatt ggaatcagac gacccaacgc
     9661 ccaatattgt ttcacacagc ctccgcccaa cgcttcaatc agtcatagac aaaacggcaa
     9721 tccatacgat acagatcata gcaacagcca tcgcaacagc gttagcaaaa tcaggggact
     9781 ccgacatagg cgcatagcat ctaccgatgc acagctcctc attcggctct atgaatacca
     9841 tacccatcac aaaatccacc gccaaaacca ggcacggctt cttatactta tgatagattt
     9901 ccaccatcct gccccatata tcccaaacat tcataccgca tatcccgcag gcaacaaatt
     9961 ccgattgaag gttacagccc
//
LOCUS       DAXIFS010000061         9875 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.061, whole genome shotgun sequence.
ACCESSION   DAXIFS010000061 DAXIFS010000000
VERSION     DAXIFS010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9875
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.061"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(128..1174)
                     /gene="adhP"
                     /locus_tag="ACFOCA_001052"
     CDS             complement(128..1174)
                     /gene="adhP"
                     /locus_tag="ACFOCA_001052"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HFC6987785.1"
                     /translation="MKMQAVVVNKNVAGDVEIVEREVRPLEYGEALVEVEYCGVCHTD
                     LHVAAGDYGEKPGRVLGHEGIGLVKEVADGVKNLKVGDRVSIAWLFQSCGSCEYCNTG
                     RETLCRSVLNAGYTADGGMATHCIVSADYAVKVPEGLDPAQASSITCAGVTTYKAIKV
                     SSVRPGQWIAIYGAGGLGNLGVQYAKKVFGAHVVAIDINDEKLAFAKESGADLVINAA
                     KEDAAKVIQEKTGGAHVAIVTAVSAAAFNSAVNCVRAGGRVVAIGLPPESMDLSIPRL
                     VLDGIEVVGSLVGTRKDLEEAFQFGAESLVVPKVQLRALDEAPAIFQEMREGKITGRM
                     VIDMKKECGCGHHH"
     gene            complement(1457..1846)
                     /locus_tag="ACFOCA_001053"
     CDS             complement(1457..1846)
                     /locus_tag="ACFOCA_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6987786.1"
                     /translation="MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRVRLSEVR
                     TTLLHNAQTMERYYRQKGTFKTYDKNKLKQNKYFNVTLSKVSPDHFTLQADPNPTTND
                     GETCVVTLNDGGTIAASGTNQSCPGFD"
     gene            2072..3250
                     /locus_tag="ACFOCA_001054"
     CDS             2072..3250
                     /locus_tag="ACFOCA_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacA family efflux pump subunit"
                     /protein_id="HFC6987787.1"
                     /translation="MAKMMKWAAVAAVAAAAVWGGWSYLKPEPQAAYITEAVRRGDIS
                     RTVSATGEISPSNLVSVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEK
                     SKLETYQAKLVSAQIALGSAEKKYKRQAALWKDDATAKEDLESAQDALAAAKANVAEL
                     KALIRQSKISINTAESELGYTRITATMDGTVVAILVEEGQTVNAAQSTPTIVQLANLD
                     MMLNKMQIAEGDITKVKAGQDISFTILSEPDTPIKAKLDSVDPGLTTMSSGGYNSSTD
                     TASNAVYYYARSFVPNPDGKLATGMTTQNTVEIDGVKNVLIIPSLTVKNRGGKAFVRV
                     LGADGKAAEREIRTGMRDSMNTEVKSGLKEGDKVVISEITAAEQQESGERALGGPPRR
                     "
     gene            3316..5250
                     /locus_tag="ACFOCA_001055"
     CDS             3316..5250
                     /locus_tag="ACFOCA_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HFC6987788.1"
                     /translation="MSLIECKNINRYFGSGENRVHILKDISLSIEKGDFVAIIGQSGS
                     GKSTLMNILGCLDTAGSGSYRIDGIETAKMQPDELAALRRERFGFIFQRYNLLSSLTA
                     RDNVALPAVYMGAGGKERSARADKLLQDLGLASKEGNKPGELSGGQQQRVSIARALMN
                     GGEIIFADEPTGALDTASGKNVMEIIHKLHEAGHTVIMVTHDPGIAANANRVIEIRDG
                     EIISDTSKNPEIPASNVGRIREKASWSFYYDQFVEAFRMSVQAVLAHKMRSLLTMLGI
                     IIGIASVVSVVALGNGSQKKILEDISSIGTNTISIFPGRGFGDRRSGRIKTLTIDDAK
                     IIAKQSYVASATPMTSSGGTLTYRNTDLTASLYGVGEQYFDVRGLKLETGRLFDENDV
                     KEDAQVVVIDQNVKDKLFADSDPLGKTILFRKRPLTVIGVMKKDENAFGNSDVLMLWS
                     PYTTVMHQITGESHTNSITVKIKDNANTQVAEKGLTDLLKARHGTEDFFMNNSDSIRQ
                     IVESTTGTMKLLISSIALISLVVGGIGVMNIMLVSVTERTKEIGIRMAIGARRGNILQ
                     QFLIEAVLICVIGGLVGVGLSAAVSLVFNHFVTDFPMDISAMSVIGAVACSTGIGIAF
                     GFMPANKAAKLNPIDALAQD"
     gene            complement(5553..6353)
                     /locus_tag="ACFOCA_001056"
     CDS             complement(5553..6353)
                     /locus_tag="ACFOCA_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HFC6987789.1"
                     /translation="MKTKLIKILTPFTVLPLLACGQTPVSNANAEPAVKAEPAVKAKS
                     AGKSVAASLKARLEKTYSAQDLKVLSVNETPIKGIYEVVVSGKQIIYTDAKGDYMLVG
                     DLINVNTRQSLTEERAADLNKIDFASLPLDKAIKEVRGNGKLKVAVFSDPDCPFCKRL
                     EHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSI
                     CDNPVAETTSLGEQFGFNGTPTLVFPNGRSQSGYSPMPQLEEIIRKNQ"
     gene            6492..8681
                     /locus_tag="ACFOCA_001057"
     CDS             6492..8681
                     /locus_tag="ACFOCA_001057"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFC6987790.1"
                     /translation="MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMV
                     WETDIAPDMDTARILSVRTAFVEEKPLPQSWRDLLAFTSRYYHYPTGQAVFAALPQGL
                     KETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
                     AKLIEDWAEQGWIETTEAAKPVLRPYHGQASHSEFVLNANQQKASDAIQTALGRFQPF
                     LLYGITGSGKTEVYFDAMAKVLAQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLH
                     SRMAAGRRTQDYLSAMSGQAKLVIGTRLAVFTPMDDVGLIVVDEEHDGSFKQDNELRY
                     HARDLAVWRAKQSGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDIL
                     NVGRLKLDNGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCSDCGHTFGCPNCSA
                     KMVLHQRARQLRCHHCDHREPVPFKCPDCGNQDLTAVGHGTQRVEETLRAFLPKAAVV
                     RVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNADGSLYSA
                     DFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNE
                     RQMFAMPPFGFQTAVRADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLA
                     ERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRWSVDVDPQEA"
     gene            complement(8728..9801)
                     /locus_tag="ACFOCA_001058"
     CDS             complement(8728..9801)
                     /locus_tag="ACFOCA_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6987791.1"
                     /translation="MRPFCVGATVLAILGALVFFISPGVVVLHRQIFLELMLPAAYGG
                     FLTAALLDWTGFSGNLKPATTLMAVLLLVAAVLLPFLPQLAAFFVAAYWLVLLLFCAW
                     LIWLARNTDNFALLMLLAAFTVFQTAYAATGDLNLLRAQVHLNMAAVMFVSIRVSVLL
                     GAEALKECRLKDPVFIPNIVYKNIAITFLLLHAAAELWLPAQTAGFTALAVGFILLAK
                     LRELHHHELLRKHYVRTYYLLQLFAAAGYLWTGAAKLQNLPASAPLHLITLGGMMGGV
                     MMVWLTAGLWHSGFTKLDYPKLCRIAVPILFAAAVSRTVLMNVNPIFFITVPAILTVA
                     VFVLYLFTFVPIFQANAFTGDPE"
BASE COUNT         2329 a         2543 c         2853 g         2150 t
ORIGIN      
        1 gacgtgttgc gatacgggtt ttcagacggt atttcaaaca gaacagatta aaatcaaatc
       61 caaatccata aaaaatgccg tctgaacagc gttcagacgg catttcgatg tgtatcgcca
      121 cgtcaaatca gtggtgatga ccgcagccgc attctttttt catatcgatc accatacggc
      181 cggtgatttt gccttcgcgc atttcttgga aaatggcggg tgcttcatcc aaagcacgca
      241 gttggacttt cggcacaacc aaactttccg cgccgaattg gaaggcttct tccaaatctt
      301 tgcgcgtgcc gaccaaagag ccgaccactt cgatgccgtc caaaaccaaa cgcgggatgg
      361 acaaatccat cgattccggc ggcagtccga tggcaaccac acgtccgccc gcgcggacgc
      421 aattcacggc agagttgaat gcggcggcgg atacggcggt aacaatggct acgtgtgcac
      481 cgccggtttt ttcctgaatc actttggcgg catcttcttt ggcagcgttg atgactaaat
      541 ctgcgccgct ttctttggca aaagccagtt tttcatcgtt gatgtcgatg gcgacgacgt
      601 gtgcgccaaa tacttttttc gcgtattgga cccccaagtt gcccaaaccg cccgcgccgt
      661 agatggcaat ccactgtccc ggacgaacac tggaaacttt aatggcttta taagtggtta
      721 caccggcaca agtaatgctc gaagcttgcg caggatccaa gccttctggg actttgaccg
      781 cgtaatcggc actcacgata cagtgggtcg ccatgccgcc gtcggcagta tagccagcgt
      841 tcaatacaga gcggcacagg gtttcgcggc cggtattgca gtattcgcaa gagccgcagc
      901 tttggaacag ccaggcgatg ctgacgcggt cgccgacttt cagatttttc acaccgtcgg
      961 caacttcttt aaccaaaccg atgccctcgt gtcccagcac gcggcccggt ttttcgccgt
     1021 agtcgcctgc cgcaacgtgc aggtcggtgt ggcacacgcc gcaatattcg acttcgacca
     1081 acgcctcgcc gtattccaac gggcgaacct cgcgttcgac tatttccaca tcgcccgcta
     1141 catttttatt cacaacaact gcctgcattt tcatgattgc gctccttagt tacggcaaaa
     1201 aaacctgtaa acggaatgtt gtccgatata agggtaagca tacgcttccg catctcacag
     1261 gtcaagtggt atgttgttga aaaatataga ttatatgtta tattataaca tcttggaaag
     1321 gcacggcatc ggggcggttg ccggatgagg ggcggcaggt ttcaagtttg aaaaaccgga
     1381 cggcaaaccc gtaaaaatgc cgtctgaagc tgtgtccgga cggcatcttt acgggtttgc
     1441 gggcttcggc ggaggattag tcgaagccgg ggcaggattg gtttgtaccg gaagcggcaa
     1501 tggtaccgcc gtcgttgagc gtaacgacgc aggtttcgcc gtcgttggtg gtgggattgg
     1561 ggtcggcctg aagggtaaag tggtcggggc tgactttgct taaggtaacg ttgaaatatt
     1621 tgttttgttt cagtttgttt ttgtcgtagg ttttaaacgt ccctttttgg cggtagtaac
     1681 gttccatggt ctgcgcgttg tgcagcaggg tcgtcctgac ttccgacagg cggacgcgcc
     1741 ggatgtaggt tttataggaa gggtaggtga tgagcgtcag gatgccgagg atggcgacgg
     1801 caatcatcag ctcgagcagc gtaaagcctt tttgaacgtt tttcatagca atgtgtttcc
     1861 atttgtttgt cggtcggcga cattataacg ccgtatcgga aatggcggaa tatgtaaacg
     1921 gattgaaatt ttcgggaaag cagattgtat aagccattta aaacaaatgg ttatttttat
     1981 tgtcggcagt ttgccgcctt ggatggggca gggacttgcg gtagaatccg cttccgattt
     2041 atgggattga cgcatacaga gaattgaaaa catggcaaaa atgatgaaat gggcggctgt
     2101 tgcggcggtc gcggcggcag cggtttgggg cggatggtct tatctgaagc ccgagccgca
     2161 ggctgcttat attacggaag cggtcaggcg cggcgacatc agccggacgg tttctgcaac
     2221 aggggagatt tcgccgtcca acctggtatc ggtcggcgcg caggcatcgg ggcagattaa
     2281 gaaactttat gtcaaactcg ggcaacaggt taaaaagggc gatttgattg cggaaatcaa
     2341 ttcgacctcg cagaccaata cgctcaatac ggaaaaatcc aagttggaaa cgtatcaggc
     2401 gaagctggtg tcggcacaga ttgcattggg cagcgcggag aagaaatata agcgtcaggc
     2461 ggcgttgtgg aaggatgatg cgaccgctaa agaagatttg gaaagcgcac aggatgcgct
     2521 tgccgccgcc aaagccaatg ttgccgagct gaaggctcta atcagacaga gcaaaatttc
     2581 catcaatacc gccgagtcgg aattgggcta cacgcgcatt accgcaacga tggacggcac
     2641 ggtggtggcg attctcgtgg aagaggggca gactgtgaac gcggcgcagt ctacgccgac
     2701 gattgtccaa ttggcgaatc tggatatgat gttgaacaaa atgcagattg ccgagggcga
     2761 tattaccaag gtgaaggcgg ggcaggatat ttcgtttacg attttgtccg aaccggatac
     2821 gccgattaag gcgaagctcg acagcgtcga ccccgggctg accacgatgt cgtcgggcgg
     2881 ttacaacagc agtacggata cggcttccaa tgcggtctac tattatgccc gttcgtttgt
     2941 gccgaatccg gacggcaaac tcgccacggg gatgacgacg cagaatacgg ttgaaatcga
     3001 cggcgtgaaa aatgtgctga ttattccgtc gctgaccgtg aaaaatcgcg gcggcaaggc
     3061 gtttgtgcgc gtgttgggtg cggacggcaa ggcggcggaa cgcgaaatcc ggaccggtat
     3121 gagagacagt atgaataccg aagtaaaaag cgggttgaaa gagggggaca aagtggtcat
     3181 ctccgaaata accgccgccg agcaacagga aagcggcgaa cgcgccctag gcggcccgcc
     3241 gcgccgataa acgaatatgc cgtctgaaca cggaaacggt ttcagacggc atttgttatt
     3301 gatttacgga atattatgag cttgatcgaa tgtaaaaaca tcaaccgcta tttcggcagc
     3361 ggcgagaacc gcgtccatat tttgaaagac atcagcctgt cgatagagaa gggcgatttt
     3421 gtcgccatca tcgggcagtc cggttcgggc aagtccacgc tgatgaacat actcggttgt
     3481 ttggataccg ccggttccgg ttcgtaccga atcgacggca tcgaaactgc caaaatgcag
     3541 cctgacgaac tggcggcatt gcgccgcgaa cgcttcggct ttatcttcca acgctacaac
     3601 ctcttaagct cgctgaccgc aagggataac gtcgcgctgc cagccgtcta tatgggcgcg
     3661 ggcggcaaag agcgttccgc gcgggcggac aaactcttgc aggatttggg tttggcaagc
     3721 aaagagggca acaagcccgg cgaactctcg ggcggacagc agcagcgcgt ctccatcgcc
     3781 cgcgccctga tgaacggcgg agaaatcatc ttcgccgacg agccgaccgg cgcactcgat
     3841 accgccagcg gcaaaaacgt gatggaaatc atccacaagc tgcacgaagc cgggcatacc
     3901 gtcattatgg tcacgcacga ccccggcatc gccgccaatg ccaaccgcgt catcgaaatc
     3961 cgggacggcg aaatcatttc cgacacctcg aaaaatcccg aaatccccgc aagcaatgtc
     4021 gggaggattc gggaaaaagc ctcgtggtcg ttttattacg accagtttgt cgaagccttc
     4081 agaatgtcgg tgcaagcagt attggcgcac aaaatgcgtt cgcttctgac gatgctcggc
     4141 atcatcatcg gtatcgcttc ggttgtctcc gtcgtcgcat tgggcaacgg ttcgcagaaa
     4201 aaaatccttg aagacatcag ttcgataggg acgaacacca tcagcatctt cccggggcgc
     4261 ggcttcggcg acaggcgcag cggcaggatt aaaaccctga ccatagacga cgcaaaaatc
     4321 atcgccaaac aaagctacgt tgcttccgcc acgcccatga cttcgagcgg cggcacgctg
     4381 acctaccgca ataccgacct gaccgcttct ttgtacggcg tgggcgaaca atatttcgac
     4441 gtgcgcggac tgaagctgga aacggggcgg ctgtttgacg aaaacgatgt gaaagaagac
     4501 gcgcaggtcg tcgtcatcga ccaaaatgtc aaagacaaac tctttgcgga ctcggatccg
     4561 ttgggtaaaa ccattttgtt caggaaacgc cccttgaccg tcatcggcgt gatgaaaaaa
     4621 gacgaaaacg ctttcggcaa ttccgacgtg ctgatgcttt ggtcgcccta tacgacggtg
     4681 atgcaccaaa tcacaggcga gagccacacc aactccatca ccgtcaaaat caaagacaat
     4741 gccaataccc aggttgccga aaaagggctg accgatctgc tcaaagcgcg gcacggcacg
     4801 gaagatttct tcatgaacaa cagcgacagc atcaggcaga tagtcgaaag caccaccggt
     4861 acgatgaagc tgctgatttc ctccatcgcc ctgatttcat tggtagtcgg cggcatcggc
     4921 gtgatgaaca tcatgctggt gtccgttacc gagcgcacca aagaaatcgg catacggatg
     4981 gcaatcggcg cgcggcgcgg caatattttg cagcagtttt tgattgaggc ggtgttaatc
     5041 tgcgtcatcg gcggtttggt cggcgtgggt ttgtccgccg ccgtcagcct cgtgttcaat
     5101 cattttgtaa ccgacttccc gatggacatt tccgccatgt ccgtcatcgg cgcggtcgcc
     5161 tgttcgaccg gaatcggcat cgcgttcggc tttatgcctg ccaataaagc agccaaactc
     5221 aatccgatag acgcattggc acaggattga ggtttgaaca aagatgccgt ttgaagctgc
     5281 cggaccggtc attttggagc agaaacttat tggacaaaaa cggtttctta gattctacgt
     5341 tccagattcc cacttgcgtg ggaatgacgg cggtgtgttt cgtattgttc agtttattat
     5401 tttcaatcat tcaatgggtt aggatgtatt tgttggcttg ctgtactggt ttaaatttaa
     5461 tccactataa atttcagtgc ggattggttt tcaggcggca tttcccgcaa aaaaggcttg
     5521 gaattttcca agccttttgt tttgcggatg gattattgat ttttgcggat gatttcctcc
     5581 agttggggca tcgggctgta gccgctttgg ctgcgcccgt tggggaagac gagggtcggc
     5641 gtgccgttga agccgaattg ttcgcccaag gaagtggttt ccgcgacggg attgtcgcag
     5701 atgctgccgc cgaccgggaa tttgccttta cgcatccaat ccgtccacgc tttggcgcgg
     5761 tcgggctgac accataagat ttgcgccttg cgcgcggcat cagggtgcag gccggcaatg
     5821 ggcatcataa agctgtaaac cgtcacgtcg gtcatttttt caaactcgtg ttccaagcgt
     5881 ttgcagaacg gacaatcggg gtcggagaag acggcgactt tcagcttgcc gttgccgcgc
     5941 acttctttga tggctttgtc caaaggcagg gaagcaaagt cgattttgtt caaatcggcg
     6001 gcgcgttctt cagtcaggct ttggcgcgtg ttgacgttga tgaggtcgcc aacaagcata
     6061 tagtcgcctt tggcatcggt atagatgatt tgtttgccgc tgacgacaac ttcgtaaatg
     6121 cctttaatcg gtgtttcatt gacgctcaac actttcaaat cttgggcgga ataggttttt
     6181 tccaaacgcg ctttcaaaga ggcggcaacg gatttgccgg cggacttggc tttgacggcg
     6241 ggttcggctt tgacggcggg ttcggcgttg gcattggaaa cgggcgtttg cccgcaagcc
     6301 agcagcggga ggacggtaaa gggggtcaag attttgatta acttggtttt catataaaga
     6361 tgattgcgcg tgttggaaag gcggaattgt atcaaatctc tgttgcgcct gcattgcgcc
     6421 taggctcaat ttatcgtctg aaaatagctt ccgcctgtta aaatacgcaa aaaaatgatt
     6481 tgcctgcctg tatgatctac caccgcatcg ccgtaaacgt gccgctttca gacggccttt
     6541 tgacttattc ccattccgat ccgcttcctc caggaacgcg ggtgcttgtg cctttccgca
     6601 ataaaaccgt ggtcgggatg gtgtgggaaa cggatattgc gccggatatg gatacggcgc
     6661 ggattttgag cgttcggacg gcctttgtgg aagaaaagcc gttgcctcaa agctggcgtg
     6721 atttgttggc atttacgtcg cgttattacc actatccgac cgggcaggcg gtgtttgccg
     6781 cgctgccgca gggtttgaag gaaacgcgcg cggtggaaat gccgcagccg ccgttgtttt
     6841 atgctttgaa cgaagcgggc agggcgcaaa cgccgccgcc ggctcggttc aacaaaaaag
     6901 cggctttgtg ggatgcgctg ctgtcgggcg gaatgacgat ggcggcgttg aagcaggtga
     6961 acgcgcaggc ggcgaaatta atcgaagatt gggcggaaca gggttggatt gaaacgacgg
     7021 aagcggcgaa acctgtattg aggccgtacc acgggcaggc ttcgcactct gaatttgtgt
     7081 tgaatgccaa ccagcagaaa gcttccgatg ccattcagac ggcattggga cgcttccagc
     7141 cgtttctgct gtacggcatc accggcagcg gcaagaccga ggtgtatttt gatgcgatgg
     7201 cgaaagtgtt ggcgcagggg cggcaggtgt tgtttctgtt gcccgaaatc aacctcacgc
     7261 cgcagctttt gaagcgggtg gaaaaccgtt ttgccgacgt accgaccgcc gtgttgcaca
     7321 gccggatggc ggcaggcagg cgcacgcagg attatctgag cgcgatgtcg gggcaggcga
     7381 agctggtcat cggcacgcgg ctggcggtgt tcacgccgat ggatgatgtc gggctgattg
     7441 tggtcgatga ggaacacgac ggctcgttca aacaggacaa cgaattgcgc tatcacgccc
     7501 gcgatttggc ggtgtggcgg gcgaagcaga gcggctgccc gatcatattg ggcagtgcca
     7561 cccccagctt ggagagttgg cacaaggcgc aaagcggcgc gtaccgcctg ctgcaactga
     7621 ccgaacgcgc ccataccgcc gcgcaactgc cgcaagtgga catcctcaac gtaggccgtc
     7681 tgaaactcga caacggtttc tcgccgcaag ccttgcagct tttgaaacag aattttgaag
     7741 cgggcggcat gtcgctggtg tacctcaacc gtcgcggttt cgcgccagcg ctgttttgca
     7801 gcgactgcgg ccataccttc ggctgcccga actgctccgc caaaatggtg ctgcaccaac
     7861 gtgcccgcca actgcgctgc caccactgcg accaccgcga acccgtcccg ttcaaatgcc
     7921 ccgactgcgg caaccaagat ctgaccgccg tcggacacgg cacgcagcgc gtcgaagaaa
     7981 ccctgcgcgc cttcctgccc aaggcagccg tcgtccgtgt tgacagggac agcaccgcgc
     8041 acaaaaacga ctgggcggat ttgtaccgcc gcattgccga caacgaaatc gacattctgg
     8101 tcggcacgca gatgctcgcc aaagggcatg atttcgcgcg gctcaacctc gttatcgtgt
     8161 tgaacgccga cggcagcctg tacagcgcgg actttcgcgc cccggaaagg ctgttcgccg
     8221 agctgatgca ggtgtccggc agggcggggc gcgccgacaa acccggcaag gtgttgatac
     8281 agacccaact gcccgaacat cccgtcttcg ccgccgtcaa agcgcaggat tatgccgtgt
     8341 tcgccgaaaa cgaattgaac gagcggcaaa tgttcgcgat gccgcccttc ggtttccaga
     8401 ccgccgtccg cgccgatgcg ccgcgtgttg ccgatgcgat ggaatttctc aacgccgcca
     8461 aagaaaccct cgccccgctg ttgcccgaaa gcgtttccca gtttggcgcg gctccgatgc
     8521 tgatggtgcg ccttgccgaa cgcgaacgcg cgcaaatctt cctcgaatca acatcccgac
     8581 aagatttgca ccgagccgtg agtttgtggg tgcaggtgtt gcagcaaaac agggacggca
     8641 aaatccgatg gtcggtggat gtcgatccgc aggaggcttg attattggca atccgatgcc
     8701 gtctgaaaac cgtttcagac ggcattttta ttccggatcg cccgtaaacg catttgcctg
     8761 aaagatcggt acgaacgtaa agagataaag cacaaacacg gcgacggtca gaatcgcggg
     8821 gacggtgatg aagaatatcg ggttcacgtt cattaaaaca gtgcgcgaaa cggcagcggc
     8881 gaaaaggatg gggacggcga tgcggcagag tttggggtag tcgagcttgg taaagccgct
     8941 gtgccacagt ccggcggtca gccacaccat catcacgccg cccatcatgc ctccgagggt
     9001 aatcaggtgc aggggcgcgg aggcaggtaa gttttgcagt ttcgccgcgc ctgtccacaa
     9061 atagcctgcg gcggcaaaga gctggagcag gtaataagtg cggacgtagt gtttgcgcag
     9121 gagttcgtga tggtgcagtt cgcgcagttt ggcaagcagg ataaagccga cggcgagcgc
     9181 ggtaaaaccg gcggtttgcg cgggcagcca aagttcggcg gcggcgtgca agagcaggaa
     9241 agtaatggcg atgtttttat aaacgatatt tggaataaaa acagggtctt tcagacggca
     9301 ttctttaagg gcttccgcgc ccagcaaaac actcacacgt atggaaacaa acatcaccgc
     9361 agccatattt aaatgcactt gcgcgcgcaa caggttcaag tcgccggttg ccgcgtatgc
     9421 cgtctgaaaa acggtgaacg cggcaagcag catcagcagg gcgaagttat ccgtgttgcg
     9481 ggccagccaa atcaaccaag cgcagaacag caataaaacc agccaataag ccgctacaaa
     9541 gaatgcggca agttgcggta aaaacggcaa taaaacagcc gcaacaagca acaacaccgc
     9601 catcaaagta gtggcaggtt tcaggttgcc cgaaaaaccc gtccagtcca acaaagccgc
     9661 agtcaggaaa ccaccatatg ctgcaggcag catgagttct aagaagattt ggcggtgcag
     9721 gacgacgaca ccggggctga tgaaaaacac caacgcgccg agtatggcaa gcactgtcgc
     9781 gccgacgcaa aacgggcgca tagcaacagt atttttcacc ccgtcgggca aaaataccaa
     9841 aactcaaatc aagccgtccg gataccgttt tcggc
//
LOCUS       DAXIFS010000062         9767 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.062, whole genome shotgun sequence.
ACCESSION   DAXIFS010000062 DAXIFS010000000
VERSION     DAXIFS010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9767
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.062"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(312..545)
                     /locus_tag="ACFOCA_001059"
     CDS             complement(312..545)
                     /locus_tag="ACFOCA_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HFC6987792.1"
                     /translation="MKLTLMFREYCSLCHKMRDALKPFQNEYGFGLEVVDVDENPVLE
                     EKYNELVPVLLAGDEEICHWFLDEDRLKQFLER"
     gene            complement(711..911)
                     /locus_tag="ACFOCA_001060"
     CDS             complement(711..911)
                     /locus_tag="ACFOCA_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HFC6987793.1"
                     /translation="MFVCICNAVTDHQIKETIAAGATTMGDLQSQLGVASCCGCCGEL
                     AASFLTAHNAQPTVTAGINVQA"
     gene            complement(1083..1958)
                     /gene="xerD"
                     /locus_tag="ACFOCA_001061"
     CDS             complement(1083..1958)
                     /gene="xerD"
                     /locus_tag="ACFOCA_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HFC6987794.1"
                     /translation="MEEGLIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRM
                     LKDADEADLAAAVYVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDK
                     NIPTLITEQQISRLLAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRG
                     CITALGKGDKQRMVPMGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLA
                     WMIVKEYAGRAGIGHISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVA
                     NVWLQGVVKEHHSRN"
     gene            complement(2010..2450)
                     /locus_tag="ACFOCA_001062"
     CDS             complement(2010..2450)
                     /locus_tag="ACFOCA_001062"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFC6987795.1"
                     /translation="MDVKYEFTLPSSSGADFHSAEHLPLVVYFYPKDSTPGCTTEGLD
                     FNARLEQFEALGYTVVGISRDGVKAHQNFCAKQGFRFELLSDKDETVCRLFDVIKLKK
                     LYGKESLGIERSTFVLNKDGEIAHEWRKVKVAGHAQEVLETLSR"
     gene            2771..3709
                     /locus_tag="ACFOCA_001063"
     CDS             2771..3709
                     /locus_tag="ACFOCA_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HFC6987796.1"
                     /translation="MSIHTLKRLPSSLLLGLCLSLPSAHLFADNDILGQFLEQNMLTS
                     SDPIEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISK
                     LMSAMVVLDANLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRA
                     THALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQNVSTAKDLSLMVNAAA
                     QYPQIRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKA
                     NIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS"
     gene            3838..4131
                     /gene="hfq"
                     /locus_tag="ACFOCA_001064"
     CDS             3838..4131
                     /gene="hfq"
                     /locus_tag="ACFOCA_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HFC6987797.1"
                     /translation="MTAKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYV
                     VLLRNTSVTQMVYKHAISTIVPARSVNLQHENRPQAAPASTLVQVETVQQPAE"
     gene            4215..4781
                     /locus_tag="ACFOCA_001065"
     CDS             4215..4781
                     /locus_tag="ACFOCA_001065"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6987798.1"
                     /translation="MLLQNILPFAHCLLRKALPEGGNALDGTAGNGHDTLFLAQTAGI
                     RGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILDGHENLKQYIPKPLDAAIFNFGWLP
                     GGDKSLTTRTETSIAALSATLSLLKENGMLIAVLYPGHENGKQEAEAVGQWAKNLPQE
                     QFAVLRYGFTNRKNSPPYLLAFEKLRQK"
     gene            4835..5209
                     /locus_tag="ACFOCA_001066"
     CDS             4835..5209
                     /locus_tag="ACFOCA_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HFC6987799.1"
                     /translation="MQYLFVKYSHQIFVTITILVFNIRFFLLWKNPEKPLAGFWKALP
                     HLNDTMLLFTGLWLMKITHFSPFNAPWLGTKILLLLAYIALGMMMMRARPRSTKFYTV
                     YLLAMCCVACIVYLAKTKVLPF"
     gene            5219..5713
                     /gene="folK"
                     /locus_tag="ACFOCA_001067"
     CDS             5219..5713
                     /gene="folK"
                     /locus_tag="ACFOCA_001067"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFC6987800.1"
                     /translation="MNNRHFAVIALGSNLENPAQQVRAALDTLSSHPDIRLKQASSLY
                     MTAPVGYDNQPDFVNAVCTVSTTLDGIALLAELNRIEADFGRERSFRNAPRTLDLDII
                     DFDGISSDDTRLTLPHPRAHERSFVIRPLAEILPDFVLGKHGKVAELSKRLGNQGIRL
                     LPDR"
     gene            complement(5838..6317)
                     /locus_tag="ACFOCA_001068"
     CDS             complement(5838..6317)
                     /locus_tag="ACFOCA_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFC6987801.1"
                     /translation="MPESIFKQISLDILKLHRDSVYSLLATSGCNCQVHEAAYVNIDG
                     KYYIALSCEPEVGEVKTGILLIEDESRNLRLSWVGSARELDCKDNAYKRALSALSRKL
                     GRCKDKLHTAVQPFLLELVPEKGRFSVGDEEVWISRNDLVRALYPVGYSMRQAVFQI"
     gene            complement(6537..7274)
                     /gene="ubiE"
                     /locus_tag="ACFOCA_001069"
     CDS             complement(6537..7274)
                     /gene="ubiE"
                     /locus_tag="ACFOCA_001069"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFC6987802.1"
                     /translation="MGGQKTHFGFSTVNEDEKAGKVAEVFHSVAKNYDIMNDVMSAGL
                     HRVWKHFTINTAHLKKGDKVLDIAGGTGDLSRGWAKRVGKEGEVWLTDINSSMLTVGR
                     DRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGT
                     LLVLEFSKIYKPLEGAYDFYSFKLLPVMGKLIAKDADSYQYLAESIRMHPDQETLKQM
                     MLDAGFDSVDYHNMSAGIVALHKGVKF"
     gene            complement(7317..7685)
                     /locus_tag="ACFOCA_001070"
     CDS             complement(7317..7685)
                     /locus_tag="ACFOCA_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HFC6987803.1"
                     /translation="MNNIPVEIRLLKNRTVLVLTYGDEPKNLPAEFLRVYSPSAEVRG
                     HGVGQDVLQTGKADVQITDLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQ
                     EYLDKLAAAGASRFEKQSDC"
     gene            7805..9424
                     /gene="mnmC"
                     /locus_tag="ACFOCA_001071"
     CDS             7805..9424
                     /gene="mnmC"
                     /locus_tag="ACFOCA_001071"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFC6987804.1"
                     /translation="MDNLVWDGVPDIRTLDQTIRKHAHPLNLIVCLPDNQIPDFQTAQ
                     DASDAECRLKHRLDQATQCLQFDSINLIEHILPDVRFWLVPPSRTRRLREHFHHISWQ
                     TEAIPQTESKPDKPWFALPQTSERQKPEHILVIGAGISGAATAHALASHGISVTVLEA
                     RKAAQAASGNRQGLLYAKISPHDTEQTELLLAGYGYTKRLLGHILPESETWGGNGIIH
                     LNYSRTEQQRNHELGLQKHHNHLYRSITQAEAEKIAGIPLSVPYDHPSCGLYWQHGVW
                     LNPPAFVRTLLNHPLIGLHEDTPLTDISHDGEKWIASTPNGIFSATHIIYCTGAHSPR
                     LPETNLAALPLRQIRGQTGLTPSTPFSEQLRCAVSGESYISPSWHGLHCYGASFIPNS
                     SHTGWNEAEEASNRQALAHLNPALSESLFAANPNPQKHQGHAAIRCDSPDHLPLVGAL
                     GDIAAMQQTYAKLALDKNYRIDAPCPYLPNAYANTAHGTRGLATAPICAAAVAAQILG
                     LPHPFSQRLRHALHPNRTIIRAIVRRKDLTP"
     gene            complement(9538..9655)
                     /locus_tag="ACFOCA_001072"
                     /pseudo
     CDS             complement(9538..9655)
                     /locus_tag="ACFOCA_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
BASE COUNT         2602 a         2980 c         1969 g         2216 t
ORIGIN      
        1 taccgattac acaaacacat atcatcttta cacaatcatg cttccatcaa cagtaaaaca
       61 tgatatgatt gccaacaata acatctcaca ataaattttc taatttttat tgaaaaaatc
      121 aataaataag aattctccca accgacaaat aaaataaaga aagggttaat atgcaacatc
      181 gaagaagact agcaatttac caagcatcca aacgtgcttc ctttaccggc aggtcatccg
      241 ccccgcaaaa acgtaaagaa cgttgatttg aaaaaaatgc cgcctgaagt cctgcttcag
      301 acggcatttt tttaccgttc gagaaactgt ttcaacctgt cctcatccaa aaaccagtgg
      361 cagatttcct catctcccgc caacaaaacg ggaaccagct cattgtattt ttcttccaaa
      421 acaggatttt catccacatc gaccacttcc agcccgaacc cgtattcatt ttgaaaaggt
      481 ttgagtgcat cgcgcatttt gtggcacaag ctgcaatatt cacgaaacat caaggtcaat
      541 ttcatccgcg tttccttatc tgtcaatttg cacacgccaa agccttagac gcagcagaat
      601 catggtctat ttgggaaaaa acaatgtttt caaggaagat gatactcaag tcctgccaaa
      661 aacagcaaaa atgccgtctg aacagttcag acggcatttc caaaaccgtt ttacgcttga
      721 acgttgatac ccgccgtaac cgtcggttgc gcattgtgcg ccgtcagaaa cgaagcggca
      781 agctccccgc agcagccgca gcagctcgct acgcccaatt gcgactgcaa atcgcccatt
      841 gtggtcgcgc cggcggcgat tgtttccttg atttgatggt cggtaacggc attgcagatg
      901 cagacaaaca ttttgtgctc cgtgtgttct caaactatcg taccgatagc ggcttttatt
      961 atcgtatgca aatataaata aaaacggttc gcattgcaag gtcggcatac acggtttgtc
     1021 ttggtaattt tttatcaagt ttgcattttc gattgatttc ttattaaacc gaagcagaag
     1081 cctcagtttc gggaatggtg ttccttcact acaccctgca accatacatt ggcaacatgg
     1141 gtataaatct gcgtcgtatt caaatcggca tgtcccaaca tatcctgaac cacgcgcaaa
     1201 tccaatccgt gctgcaccaa gtgcgtggcg aaggcatggc gcaggctgtg cgggctgatg
     1261 tgcccgatgc ctgccctacc tgcatattct ttgacaatca tccatgccaa ctgacgggaa
     1321 atacctgttt ttttctgact gacaaacaag gcatcgcaac tcctgccctt caacaaggcc
     1381 ggacgcgcct ccgtgtaata gcgtcccacc caatacgccg attcctgccc catcgggacc
     1441 atcctctgct tgtcgccctt gcccagcgcg gtaatacagc ccctgtccaa atccacattg
     1501 ccgaagttca gcccgaccgc ctcgctgacg cgcaagccgg tcgcgtacat taattcaagc
     1561 agggccttgt cccgcaaacc gtgcggcgtg tcggtatccg gtgcggcaag cagtcgggaa
     1621 atctgctgtt ctgtaatcag ggtcggaata ttcttgtcga ttttgggcgg tttcagcaaa
     1681 cgggtgggat tgtccgtcct tatgccttca cgctccatcc atatatacag gcgtttgcat
     1741 gccgataatg cgcgcgcctg cgaactccgt tgctctccgt caacataaac cgccgccgcc
     1801 aaatccgctt cgtccgcatc cttcagcatt ctgcccgatt gggacaggcg gcgggcgatt
     1861 ttttccaaat cgcgccggta accgtttaaa gtattctgat tgagccgcct gtccaaccac
     1921 agcgtttcaa gcagcctgtc gatcaaacct tcttccatac cgttccaaac aaatgccgtc
     1981 tgaatcttct tcagacggca tggttcacat tatcgggaaa gcgtttccaa tacttcctgc
     2041 gcgtgacccg ccactttgac tttccgccat tcatgggcga tttctccatc cttattcaag
     2101 acgaacgtac tgcgctcgat acctaacgac tctttcccgt acagtttctt caatttgatg
     2161 acatcaaaca ggcggcacac tgtttcatcc ttgtcgctca acagctcgaa ccggaaaccc
     2221 tgcttggcgc aaaaattctg atgcgccttt acgccgtcgc gggaaatacc gaccacggta
     2281 taacccaatg cctcaaactg ttccaaacgc gcattgaaat ccaagccttc cgtcgtacag
     2341 cccggcgtac tgtctttcgg ataaaaatac acgaccaaag gcagatgttc tgccgaatga
     2401 aaatccgcac cgctgctcga aggcagggta aattcatatt tcacatccat agtcctactc
     2461 ccgatattcc cattattcaa aacggcacgc agaggcaccg ccgcaattgc caaaccaacc
     2521 ccgattctac cgccccaaag gacaaggatt caactgccgg aaacatccaa accgacacac
     2581 gacggcatga aaaatatcca tgtcaaacca caaaatatgt tccgatttaa aaacagaatg
     2641 ttataaaacc caatccccaa aacacaacaa gaccgcccgc ctacgggcag tctcctgtca
     2701 gacgacatac tttacagatg gctgtttttt caacaaaata acgccaatac tcaaaaatat
     2761 ggaatcaaaa atgtccatcc atactctgaa acgcctgccc tcatcgctgc tgctcggtct
     2821 ctgcctttcc ctgccgtcag cccacctttt tgccgacaac gacattttag ggcaattttt
     2881 agaacagaac atgcttacct cctccgatcc gatagaaata ttcgccgaaa gcacaataca
     2941 ccccaccaac acccaagcca ttacaggcgg tctgattctc tcctcacagt ctgccctggt
     3001 cgtcaacaac aaaaccggac agatactgta tcagaaaaac gccgacagga ttatgcccat
     3061 cgcctccatt tccaaactga tgagcgcgat ggtcgttttg gatgcaaact tggacatgaa
     3121 cgaaaccgtt accattacgc ccgacgaaat cgaccgcctc aaagggaccg gcagccgtct
     3181 tgccataggt acggcactta cacgcaaaga actgctgcac ctgagcctga tgagcagcga
     3241 aaaccgcgcc acccatgcat tgggcagaac ctaccccggc ggcatgggcg catttgtcgc
     3301 cgccatgaac cgtaaagccc aaagcctcgg tatgtacggc agccgctttt acgaaccgac
     3361 cggactcaac ttccaaaacg tttctaccgc caaagacctg agccttatgg tcaacgccgc
     3421 cgcccaatat ccgcaaatcc gcaccaactc gacttccaac tacgcctcgg tacagaccaa
     3481 aaacgggcag cagaactaca aaaactccaa tgccctggtc agagaaggca tgtggaacat
     3541 cgaattgcag aaaaccggct acatacgcga agcaggcagg tctatggttg tcaaagccaa
     3601 cattcaaaat caacccgtta ccatcgtatt gctgaactcg cccacatccg ccacacgcgt
     3661 caacgacgcc cgcaaaatcg aatcgtggat gctgcagcaa cgctcctgac atacaaatgc
     3721 ccggcggaaa accgcccaaa cacaaaaaaa attggtaatt tttcctattc aaggctacaa
     3781 ttcgacacgc acagggcgtc tgcccgattt cacaatcata ataacggagt taaaaatatg
     3841 acagctaaag gacaaatgtt gcaagatccc ttcctgaacg ccctgcgtaa agagcacgtt
     3901 ccggtttcga tttacctggt caacggcatc aaactgcaag gtcaggttga atctttcgac
     3961 caatacgtcg ttcttctgag aaacacttcc gtcacccaaa tggtttacaa acacgccatt
     4021 tccaccatcg taccggcacg ctccgtcaac ctacaacatg aaaacagacc ccaagccgca
     4081 ccggcttcga ccctcgtcca agtggaaacc gtccagcagc ctgccgaata atccgcacga
     4141 agcatgacgt gtcatatctt tcaatacctt accgacatcg gtaaggtatt tttattttca
     4201 gacagcattt aaaaatgtta ttgcaaaaca tccttccatt cgcccattgc cttttgcgga
     4261 aggcacttcc cgaaggcggc aatgcgctgg acggcaccgc cggcaacgga cacgacaccc
     4321 ttttcctcgc acaaaccgca ggcatccggg ggaaagtgtg ggcattcgac atccagccgc
     4381 aagccctgaa caacacccga tgccgtctgc aggaagcagg ttacagcaat gtacggttca
     4441 tcttggacgg acatgaaaac ctgaagcaat atattccaaa gccgctggat gcagccattt
     4501 tcaatttcgg ctggctgccc ggcggggaca aaagccttac cacccgcacg gaaaccagca
     4561 ttgccgccct ttctgccacc ttatccctac tgaaagaaaa cggtatgctt attgccgtcc
     4621 tctatccggg acacgaaaac ggcaaacagg aggcagaagc cgtcggacaa tgggcaaaaa
     4681 acctgcctca agaacagttt gccgttttac gttacggctt taccaaccgg aaaaacagcc
     4741 caccctatct gttggcattt gaaaaactgc gtcaaaaata actgtttgcg gtaaaataag
     4801 ccgattccaa cccttatttt gataagagcc gaccatgcag tatctgtttg tcaaatacag
     4861 ccaccaaatc ttcgttacca tcaccatttt ggtattcaac atccgttttt tcctactttg
     4921 gaaaaatcca gaaaagccct tggcgggctt ttggaaggca ctgccacacc ttaacgacac
     4981 catgctgctg tttacgggat tgtggctgat gaaaattacc catttctccc cgttcaacgc
     5041 gccttggctc ggtacaaaaa tcctgcttct gctcgcctat atcgcattgg gtatgatgat
     5101 gatgcgcgcc cgtccgcgtt cgaccaagtt ctacaccgtt tacctgctcg ccatgtgttg
     5161 cgtcgcctgc atcgtttacc ttgccaaaac caaagtcctg cctttctgaa acaccgttat
     5221 gaacaacaga cattttgccg tcatcgccct gggcagtaat cttgaaaacc ctgcccaaca
     5281 ggtacgcgcc gcattggaca cgctgtcgtc ccatcctgac atccgtctta aacaggcttc
     5341 ctcactgtat atgaccgcgc ccgtcggtta cgacaatcag cccgattttg tcaatgccgt
     5401 ctgcaccgtt tccaccactc tggacggcat tgccctgctt gccgaactca accgtatcga
     5461 ggctgatttc ggacgcgaac gcagcttccg caacgcgccg cgcacattgg atttggacat
     5521 tatcgacttt gacggcatct ccagcgacga cacccgactc accctgccgc atccgcgcgc
     5581 gcacgaacgc agtttcgtca tccgcccttt ggcagaaatc ctccctgatt ttgttttagg
     5641 aaaacacgga aaggttgccg aattgtcaaa acggctgggc aatcaaggta tccgtctttt
     5701 acccgacagg taattccgca cgcggatgcc gtctgaaagc ctttcagacg gcatttttcc
     5761 tttgccgcca acacgcgtgc aaaaaaatcg ccccttggaa aaggggcgca aaaggaacac
     5821 aaaccactac caaaacttta aatctgaaac actgcctgcc gcatactgta tccgacagga
     5881 tataaagccc tcactaaatc gtttcgagaa atccaaactt cttcatcgcc gacagaaaat
     5941 ctgcctttct ccggtaccag ctccaacaga aacggttgaa ccgccgtatg caacttgtcc
     6001 ttacaccgcc ccagctttct agacaaggcg gacagggcgc gtttgtaggc attatccttg
     6061 cagtcaagct cccgcgcact gccgacccag ctcaaacgaa ggttgcggct ttcatcctca
     6121 atcagcaaaa tgcctgtttt gacttccccc acctcgggct cgcatgaaag cgcaatataa
     6181 tatttgccgt cgatgttgac atacgccgct tcatgcacct gacagttgca gccggaagtg
     6241 gcaagcagcg aataaacaga gtcccgatgc agtttcaaaa tatcaaggga aatctgttta
     6301 aaaatacttt ccggcatttt tccctccttt cgtctgctgc gttgtttact ggattgactg
     6361 cattatacag acatctccca atcttgcaaa tgataattgt tcctattttt taaaaaattt
     6421 ataaattatt gatggatatg tgaattaatt ttaagattta aaatctcttt ctcaaaaaaa
     6481 cacaaaaatg ccgtctgaaa cgtgttcaga cggcattggc ttcacaggca gtccgtttaa
     6541 aatttcacgc ccttatgcag cgcgacgatg cccgcactca tattgtgata atccacgctg
     6601 tcgaagcccg catccagcat catctgtttc aaagtttcct gatcggggtg catacggatg
     6661 gattcggcga gatactggta gctgtccgca tctttggcaa tcagtttgcc catgaccggc
     6721 agcagcttga acgaatagaa atcatacgcg ccttcgagcg gcttgtagat tttggaaaac
     6781 tccaacacca gcaacgtgcc gccaggtttc aaaacacgat acatctcttt cagcgcggca
     6841 tctttatgcg tcatgttccg caagccgaac gccacggaaa ctaagttgaa ataattgtca
     6901 gggaaaggca gtttttccgc atcggcaagc gacacgggca aaatcatgcc ttcgttcaac
     6961 agacggtcgc gcccgacggt cagcatagag gaattaatat cggtcagcca aacctcgcct
     7021 tccttgccga cccgtttcgc ccaaccgcgc gacaaatcgc ccgtaccgcc cgcaatgtcc
     7081 aacactttat cgcctttttt caggtgcgcc gtgttgatgg tgaaatgctt ccacaccctg
     7141 tgcagccctg ccgacatgac atcattcata atgtcgtagt ttttggcgac ggagtggaac
     7201 acttccgcca ctttgccggc tttctcatct tcgttgaccg tgctgaaccc gaaatgcgtt
     7261 ttttgtccac ccatattcta accacctccc tgataccgcc ctacggcatc ccaaacttaa
     7321 caatctgatt gcttttcaaa acgcgacgcg cccgccgccg ccaatttgtc caaatattcc
     7381 tgccacatcg catcgtatcc gtatgccagt ctgtgcagat acgcccaatc gtaaagaccg
     7441 ctgtcgtgcc cgtccgaaaa actgattttc agcgcgtact gtccgacagg ctgcaaatcc
     7501 gtaatttgca catctgcctt accggtctgc aaaacatcct gtcccacacc gtgtccgcgc
     7561 acttccgcac tcggcgaata gacgcgtaaa aattcggcag gcagattttt aggttcgtcc
     7621 ccataagtca aaaccaacac ggtacggttt ttcaacaaac ggatttcaac aggaatatta
     7681 ttcaaaaaac acctcggttc ggcatacaat atccggcagg cgcaggcgtg ccttcaaacg
     7741 gcgcgtattt taacagcttt atcccgatac cgatattcaa acccacactt taaacggcat
     7801 tgatatggac aatctcgtat gggacggcgt tcccgacatc cgcacactcg accaaaccat
     7861 ccgcaaacac gcacacccgc tcaacctgat tgtctgcctc cccgataatc agattcccga
     7921 ttttcaaacc gcacaagatg cttcggacgc ggaatgccgt ctgaagcacc gtttggatca
     7981 ggcaacgcag tgcctccagt tcgacagcat caacctcatc gaacacatcc tgcccgatgt
     8041 ccgcttctgg ctggttcccc cttcacgcac ccgccgcctg cgcgaacact tccaccacat
     8101 ttcctggcag accgaagcca tcccgcaaac cgaaagtaag cccgacaaac cctggtttgc
     8161 acttccacaa acatccgaac ggcaaaaacc ggaacacatc ctcgttatcg gcgcgggcat
     8221 atccggcgcg gcaaccgccc acgccttagc atcgcacggc atttccgtta ccgtattgga
     8281 agcccgaaaa gccgcccaag ccgccagcgg caaccgccaa gggctgctct acgccaaaat
     8341 ctcgccgcac gacaccgaac agaccgaact tttgcttgcc ggctacggct acaccaaacg
     8401 cctgctcgga cacatcctgc ccgaatccga aacctggggc ggcaacggca tcatccacct
     8461 caattacagc cgcaccgaac aacaacgcaa tcacgaattg ggtttgcaaa aacaccataa
     8521 ccacctctac cgcagcatca cgcaggcaga agccgaaaaa atcgccggta tcccactgtc
     8581 cgtcccatac gaccaccctt catgcggact ctactggcaa cacggcgtat ggctcaatcc
     8641 acccgcattc gtccgcaccc tcctcaacca tccgctcatt ggactacacg aagacacacc
     8701 gttaaccgac atttcccacg acggggaaaa gtggattgca agcacgccaa acggcatatt
     8761 ttccgccaca cacatcatct actgcaccgg cgcgcacagc ccccgcctgc ccgaaaccaa
     8821 cctcgccgcc ctgcctctca ggcaaatacg cggacaaacc ggcctcacac cgtccacccc
     8881 gttttccgaa caactgcgtt gcgccgtttc aggcgaaagc tacatcagcc cgtcgtggca
     8941 cggactgcac tgctacggcg cgagttttat tcccaacagc agccataccg gatggaacga
     9001 agccgaagaa gcctcaaacc gccaagcatt ggcacacctt aaccccgccc tttccgaatc
     9061 attgtttgcc gccaacccaa acccccaaaa acaccaaggg cacgccgcca tacgctgcga
     9121 cagccccgac caccttcccc tagtcggcgc actcggcgac attgccgcta tgcaacaaac
     9181 ttacgccaaa ctcgcgctgg acaaaaacta tcgcatcgat gccccatgcc catatctgcc
     9241 taatgcctac gccaacaccg cccacggcac acgcgggctt gccaccgccc ccatctgcgc
     9301 cgccgccgtt gcagcccaaa tcctaggctt gccccatccc ttttcacaac gcctgcgcca
     9361 cgccctacac cccaaccgca ccatcatccg cgccatcgtc agaaggaagg atctaacccc
     9421 ttaagccttt gccgcatgcc gtcccgacca cagaaaatca tattcaaata aacataccaa
     9481 tcctgacggt aaaatatcga aaacacccat aacattttct tcccaaaata aggagtaagg
     9541 aatgcctaac aaattgcctt tgctgtccaa gatgaatgtt ccgtaacatt cgaagacttc
     9601 cttaaccctg ccagccgttt cggtttctgt accccctgtt agataaggaa ggaatgaaaa
     9661 agccctgttg attgtatgaa gtaaagggag ttaatttttg ttaatcttcc cttctcagga
     9721 actcaatata taaggatgtt aatttttatt tcccttctcg aggactc
//
LOCUS       DAXIFS010000063         9415 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.063, whole genome shotgun sequence.
ACCESSION   DAXIFS010000063 DAXIFS010000000
VERSION     DAXIFS010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9415
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.063"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            134..343
                     /locus_tag="ACFOCA_001073"
     CDS             134..343
                     /locus_tag="ACFOCA_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFC6987805.1"
                     /translation="MPYVNIKVTGGKEAPTAAQKAELIGGVTELLARVLGKNPETTVV
                     VIDEVDTDNWGIGGKSVSERRKEGR"
     gene            432..1646
                     /locus_tag="ACFOCA_001074"
     CDS             432..1646
                     /locus_tag="ACFOCA_001074"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HFC6987806.1"
                     /translation="MDKFPKSAKLDHVCYDIRGPVHKKALQLEEEGNKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTSQGYCDSKGLYSARKAIVHYYQTKGLRDITVDDVYIGN
                     GVSELITMSMQALLNDGDEILIPAPDYPLWTAAATLAGGTVRHYLCDEENGWFPNLAD
                     MEAKITPKTKAIVVINPNNPTGAVYSREILLEIAELARKHGLIIFADEIYDKILYDGA
                     VHHHIAALAPDLLTVTFNGLSKSYRVAGFRQGWMVLNGPKHHAKGYIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNRAWELVSQIPGVSCVKPMGAMYM
                     FPKIDTEMYRIHDDMKFVYDLLVREKVLLVQGTGFNWIKPDHFRIVTLPYVHQIEEAM
                     GRLARFLQTYRQ"
     gene            complement(1733..4312)
                     /gene="clpB"
                     /locus_tag="ACFOCA_001075"
     CDS             complement(1733..4312)
                     /gene="clpB"
                     /locus_tag="ACFOCA_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HFC6987807.1"
                     /translation="MRYDKLTAKFQQALAEAQSLALAADGSCLEAGFVLKALLDDQNS
                     GAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRG
                     DAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
                     LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIF
                     IDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAID
                     LIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEING
                     LQKEYADLDEIWKAEKAISDGAANIKKQIDEVKIKIEQAKRQGDLALASKLMYEDLEH
                     LEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGERDKLLKM
                     EEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAG
                     FLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDE
                     VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMSIQDYEAV
                     KEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLTV
                     SDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEADGDRL
                     KFA"
     gene            4573..5583
                     /gene="trpS"
                     /locus_tag="ACFOCA_001076"
     CDS             4573..5583
                     /gene="trpS"
                     /locus_tag="ACFOCA_001076"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFC6987808.1"
                     /translation="MSKKRVLTGVTTTGIPHLGNYVGAIRPAVRAAQNPDTESFLFLA
                     DYHGIIKCHEPEMIHQSTQAVAATWLACGLDPERTTFYRQSDIPEVMELNWILTCITA
                     KGLMNRAHAYKAAVQANAENGQEDPDFGVEMGLFSYPILMTADILMFNANEVPVGRDQ
                     IQHVEMARDIAGRFNHRFRELFTLPEVKIDENVELLVGLDGRKMSKSYGNTIPLWEND
                     KKTQKSVNKIITNMKEPGEPKQPDESPLFEIYKAFSTPSETVEFTKMLADGLAWGEAK
                     KLLAAKINAELAEPRERYNELTADPSQIEEILQAGAQKARKEARELLDKVRDAVGIRP
                     LK"
     gene            5589..5930
                     /locus_tag="ACFOCA_001077"
     CDS             5589..5930
                     /locus_tag="ACFOCA_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987809.1"
                     /translation="MPSEPLKGLPEQNVVRLTGKHPNDLEAVSGKCMETDDKGGPVGW
                     AENGVCHTLFAKLVGNIAEDGGKLTDYLISHSALQPYQAGKSGYAAVQNGRYVLEIDS
                     EGAFYFRRRHY"
     gene            6250..6615
                     /locus_tag="ACFOCA_001078"
     CDS             6250..6615
                     /locus_tag="ACFOCA_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987810.1"
                     /translation="MKKLLIAAMMAAALAACSQEAKQEVKEAVQAVESDVKDTAASAA
                     ESAASAVEEAKDQVKDAAADAKASAEEAVTEAKEAVTEAKEAVTEAKEAVTEAAKDTL
                     NKAADATQEAADKMKDAAK"
     gene            complement(6824..8332)
                     /gene="ppx"
                     /locus_tag="ACFOCA_001079"
     CDS             complement(6824..8332)
                     /gene="ppx"
                     /locus_tag="ACFOCA_001079"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006798 - polyphosphate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HFC6987811.1"
                     /translation="MTTTPANILASVDLGSNSFRLQICENNNGQLKVIDSFKQMVRFA
                     AGLDEQKNLSAASQEQALDCLAKFGERLRGFRPEQVRAVATNTFRVAKNIADFLPKAE
                     AALGFPIEIIAGREEARLIYTGVIHTLPPGGGKMLVIDIGGGSTEFVIGSTLNPDITE
                     SLPLGCVTYSLRFFQNKITAKDFQSAISAARNEIQRISKNMRREGWDFAVGTSGSAKS
                     IRDVLAAEMPQEADITYKGMRALAERIIEAGSVKKAKFENLKPERIEVFAGGLAVMMA
                     AFEEMKLDRMTVTEAALRDGVFYDLIGRGLNEDMRGQTVAEFQHRYHVSLNQAKRTAE
                     TAQTFMDSLCHAKNVTVQELALWQQYLGRAAALHEIGLDIAHTGYHKHSAYILENADM
                     PGFSRKEQTILAQLVIGHRGDMKKMSGIIGTNEMLWYAVLSLRLAALFCRSRQDLSFP
                     KNMQLRTDTESCGFILRIDREWLERHPLIADALEYESVQWQKINMPFKVEVV"
     gene            complement(8449..9180)
                     /locus_tag="ACFOCA_001080"
     CDS             complement(8449..9180)
                     /locus_tag="ACFOCA_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6987812.1"
                     /translation="MSREINAGGHHFLYGGISGGGVHYWDNKDFSEQCLHLSLGYKNR
                     SVTRSFGIVPFVGQNLLGGSRYNFVGGFNADFSQHLSERWRLTLNAGNMWKHYQEDRT
                     AARYDSHMPLAGATLMYSAPKDWLLYGGADWSHDLTKEAEQASVRKGLRIGAVKTFDG
                     GLGLRANLRYTRRTFDAPGTIVYRFPRKDHEYQANLSFWHDKISWKGFTPQLNFRYLK
                     IDSNMKSFYTRKNTQIFMSVEKDFK"
BASE COUNT         2173 a         2440 c         2484 g         2318 t
ORIGIN      
        1 tgcggcttcg tcgccttgtc ctgatttttg ttaatccgct atatcgattt gaatttttca
       61 gaaaatgaag cggacgtttg ggcggaggca acttgtttga taagatagca atatttcaaa
      121 acggagaaag atcatgcctt atgtcaatat taaagtaacc ggcggcaagg aagcaccgac
      181 tgccgcgcaa aaagcggaac tgatcggcgg cgtaaccgaa ttgctggcac gcgtgctggg
      241 caaaaatccc gaaacaacgg ttgtcgtgat tgatgaagtg gataccgata actggggaat
      301 aggcggcaaa agcgtcagcg aacggcgcaa agagggcagg taaaaagcct gaaaatctcg
      361 gtttgatgct ttaaattccg cgtgaaaaag agtacattcc cacccattgc ccaaaattta
      421 cggaacacat catggataaa tttcccaagt ctgcaaagct cgatcacgtc tgttacgaca
      481 tacgcgggcc ggttcacaaa aaagcccttc agttggaaga ggagggcaat aaaatcctta
      541 aactcaatat cggcaaccct gcgccgttcg gctttgaagc ccctgatgaa atcttggtcg
      601 atgtcatccg caacctgccg acttcgcaag gctattgcga ttctaaaggg ctgtattccg
      661 cccgcaaagc cattgttcac tactatcaga ccaaaggttt gcgcgatatt acggttgatg
      721 atgtctatat cggcaacggc gtgtccgagc tgattacgat gtctatgcag gcattgctca
      781 acgacggcga cgaaatcctg attcccgcgc ccgactaccc tttgtggacg gcggcggcaa
      841 cgcttgcggg cggtacggta cgccattatc tgtgcgacga agaaaacggc tggttcccca
      901 accttgccga tatggaagcc aaaatcacgc ccaaaaccaa agccatcgtc gtcatcaatc
      961 ccaataatcc gacaggcgcg gtgtacagca gggaaatcct gttggaaatc gccgaactgg
     1021 cgcgcaagca cggtttgatt attttcgccg acgagattta cgataaaatc ctttatgacg
     1081 gcgcggttca ccaccacatc gccgcgcttg cccccgacct tttgacggta acgttcaacg
     1141 gtttgtccaa atcctaccgc gtcgccggct tccgccaagg ctggatggtg ctcaacgggc
     1201 cgaaacatca cgcaaaaggt tacatcgagg gtttggatat gctctcgtct atgcgcctgt
     1261 gtgccaatac gccgatgcag cacgcgattc agacggcatt gggcggctat cagagcatca
     1321 acgaatttat tttgcccggc gggcggcttt tggaacagcg caacagggcg tgggaactgg
     1381 tcagccaaat ccccggcgtg tcctgcgtca aaccgatggg cgcgatgtat atgttcccaa
     1441 aaatcgatac cgaaatgtac cgtatccacg atgacatgaa attcgtttac gatttgctgg
     1501 tgcgcgaaaa agtcttgctg gtacagggaa cggggtttaa ttggattaaa cctgaccatt
     1561 tccgcattgt cacgctgcct tacgtccatc agattgaaga ggcgatgggc aggttggcaa
     1621 gattcctgca aacctaccgc caataagggg acggtttgtc tgccgaggat aaaaaatgcc
     1681 gtctgaaacg gagattcccg tttcagacgg cattttcaac agcaggaacg aatcaggcaa
     1741 atttcagtct gtcgccgtcg gcttctaccc tgatttcgct ttcgggcgca tagtttccgg
     1801 caagcagggc ttttgccagc gggttttcga tttccgactg gatggcgcgt ttgagcggac
     1861 gtgcgccgta aatcgggtcg aaaccggctt tggcgatgat gtccagtgcg gcatcggaaa
     1921 cagtcaggcg caggttttgt ttttccaaac gtttttccaa acctttgagc tggattttcg
     1981 caatgctgcg gatgtttgcc tgatccaaac cgtggaacac gaccacttcg tcgatgcggt
     2041 tgatcatttc aggacggaaa tgttctttca catcctccat cacaacttct tttaccgctt
     2101 cgtaatcctg aatgctcatt tgttggatgt gctggctgcc gatgttggaa gtcatcacaa
     2161 tcacggtatt tttaaaatct accgtcctgc cttgcccgtc ggtcaaacga ccgtcatcca
     2221 atacttgcag caggatgttg aacacatcgg gatgggcttt ttccacttcg tccagcagaa
     2281 tcacgctgta cggtttgcgg cgcacttgtt cggtcaggta gccgccttct tcgtagccga
     2341 catagcccgg aggcgcaccg atcaggcgtg caacggcgtg tttttccata tattcggaca
     2401 tatcgatgcg aatcagatga tcttcgctgt cgaacagaaa gcctgccagg gctttacaca
     2461 actcggtttt acccacgccg gtcgggccca agaacaggaa gctgccgtaa ggcttgttcg
     2521 gatcggcaag accggagcgg ctgcggcgga tagcgtcgga cacggcacgc acggcttcgt
     2581 cctgtccgac cacgcggcgg tgcaatactt cttccatttt cagcagtttg tcgcgttcgc
     2641 cttccatcat tttggatacg ggaatgccgg tcatacggga aaccacctct gcgatttcct
     2701 ctgcgccgac attattacgc aagagtttgt ttgccggttt tgtgctgtcc gtatctgccc
     2761 gttcggcggc tgcacgctgt ttttccaaat gctccaaatc ttcatacatc aattttgaag
     2821 ccagtgccaa atcgccttgc cgttttgcct gttcgatttt aattttgact tcgtcaattt
     2881 gtttcttaat attagcagca ccgtctgaaa ttgctttttc ggctttccag atttcgtcta
     2941 aatcggcgta ttctttttgc agaccgttga tttcctcgtc tatcagttcc aaacgttttt
     3001 tgctggcatc gtctttttct ttttcaacgt gcgccttttc catccgaagc tgaattagac
     3061 ggcggtcgat tttgtccatt gcttccggct tggtttcttt ttccatcttg acacggctgg
     3121 cggcttcgtc aatcaaatca atcgctttat caggcaggaa gcggtcggta atgtagcggt
     3181 cgctcaactc cgctgcggca acgatagcag ggtcggtaat atcgataccg tggtggattt
     3241 cataacgctc ctgtaaaccg cgcaagatag cgatggtgtc ttctacactt ggctcgccaa
     3301 ccaatacttt ttggaagcgg cgttcgagtg ccgcgtcttt ttcgatgtat tggcggtatt
     3361 cgtccaaggt ggtcgcgccg atacagtgca attcgccacg tgccaaagcc ggtttcagca
     3421 tattgcccgc atccatcgca ccgtcggttt tgcctgcgcc gaccaaagta tggatttcgt
     3481 cgatgaaaat cagagtgttg ccgtcgtctt tcgccaagtc gttcaacacg cctttcaagc
     3541 gttcttcaaa ttcgccgcgg tatttcgcgc cggcaatcaa tgccgccaag tccaaaacca
     3601 gtaggcgttt gttgcgcagg gattcgggta cttcgccgtt gacgatgcgt tgtgccaaac
     3661 cttcgacgat ggcggtttta cccacgcccg gttcgccaat cagcacaggg ttgtttttgg
     3721 tacggcgttg caatacctga atcgcacggc ggatttcgtc gtcacggccg ataacggggt
     3781 cgagcttacc gtctcgggcg cgttgggtca gatcgagcgt atattttttc aaagcatcgc
     3841 gttggtcttc ggcattggca tcgttcacgt tttgtcctcc tcgtaccgcg tcaatcgcgg
     3901 cattgatgtt ttgttcggtc gcgccggctt ctttcaaaat tttgccggcc gcatcgttct
     3961 gctgcaccaa ggcaagcagg aaaagttcac tggcgatata ggcatcgccg cgtttggttg
     4021 cggctttgtc catcaggttc aacaccgcct gcaattcgcg gctgggcaga atgtcgccgc
     4081 cctggccgga cactttcggc aggctgttca aatgctgctg caaacgctgt ttcacctgcg
     4141 gcacgttcac gcccgcatga gccaagagcg cggcagcacc gctgttttgg tcgtcaagca
     4201 gggctttcag cacaaagccc gcttccagac agctgccgtc cgcagccaac gccaaactct
     4261 gagcttctgc aagggcctgt tggaatttgg cggttaattt gtcgtatcgc atttttgttt
     4321 ccttttcaaa atgtccgctg tcgaagccta tatgtgcata attgtggata actcaagttc
     4381 tgttttctgt ttttctatat ttaattcgat atatcattga atttaaagta tataaaaatg
     4441 tataataatg tgtataacta tatcttctta atatggaaaa gtctgttgtc ggctggatgt
     4501 aggtggcaaa tcgggtataa tcggcgcatc tttttccctt tcagacggca ttgatgccgc
     4561 aaggacattt ttatgagcaa aaaacgagtt ctgaccggcg taaccaccac cggcatcccg
     4621 catctgggca actacgtcgg tgctatccgc cccgccgtcc gcgcggcgca aaaccctgat
     4681 accgaatcct tcctcttcct cgccgattac cacggtatca tcaaatgcca cgagccggag
     4741 atgattcacc aatccaccca agccgttgcc gccacttggc ttgcctgcgg actcgacccc
     4801 gagcgcacca ccttctaccg ccaaagcgac attcccgaag tgatggaatt gaactggatt
     4861 ctgacctgca tcaccgccaa gggtttgatg aaccgcgccc acgcctacaa agccgccgtg
     4921 caggcaaatg cggaaaacgg gcaggaagac cccgatttcg gcgtggaaat gggtttgttc
     4981 agttatccga ttctgatgac tgccgatatt ctgatgttca acgccaacga agtccccgtc
     5041 gggcgcgacc aaatccaaca cgtcgaaatg gcgcgcgaca tcgccggccg cttcaatcac
     5101 cgcttccgag aactcttcac cctgcccgaa gtgaaaatcg acgaaaacgt cgaactcttg
     5161 gtcggtttgg acggacgcaa aatgtccaaa tcctacggca acaccattcc gctttgggaa
     5221 aacgacaaaa aaacccaaaa atcggtcaac aaaatcatca ccaatatgaa agagccgggc
     5281 gagccgaaac agcccgacga aagcccattg tttgaaatct acaaagcctt ctccacgccg
     5341 tctgaaacgg tggaatttac gaaaatgctt gccgacggcc tggcttgggg cgaggcaaaa
     5401 aaacttttgg cggcgaaaat caacgccgaa ctcgccgaac cgcgcgaacg ctacaacgag
     5461 ctgaccgccg acccttcgca aatcgaagag attttacagg caggtgcgca aaaagcgcgt
     5521 aaagaagcac gcgaattgtt ggacaaagta cgcgatgcgg tcggcatccg cccgttgaaa
     5581 taaacccgat gccgtccgaa cctcttaaag gcttgccgga acaaaacgtc gtccggctga
     5641 ccggcaagca tcccaacgac ttggaagccg tcagcggcaa atgcatggaa accgacgata
     5701 agggcggtcc ggtaggctgg gcggaaaacg gcgtgtgcca taccttgttt gccaaactgg
     5761 tgggcaatat cgccgaagac ggcggcaaac tgacggatta cctgatttcg cattccgccc
     5821 tgcaacccta tcaggcaggc aaaagcggct atgccgccgt gcagaacgga cgctatgtgc
     5881 tggaaatcga cagcgagggg gcgttttatt tccgccgccg ccattattga ggtattcgga
     5941 catcccggaa tatatttggg tttttcaaac cttgcgaaaa aaagtccgca ccgcagggaa
     6001 actcaaaagg agggggatat gtgttacaat tttccgaact gttttcataa aatagttttc
     6061 ggacgtgttt caatatggca ttgatgccgc cttattgttc gagaaaaaaa cctttatatt
     6121 taaatataat gggttttaac taaacgggaa accgttttct ctccggccga tgggcaaaat
     6181 cagccgattg atggaacacg gttcgatttt taagcaaaac cttaatcaac aactcaagaa
     6241 ggataagaca tgaaaaaatt attgattgcc gcaatgatgg cggctgcctt ggcagcttgt
     6301 tcgcaagaag ccaaacagga ggttaaggaa gcggttcaag ccgttgagtc cgatgttaaa
     6361 gacactgcgg cttctgccgc cgagtctgcc gcttctgccg tcgaagaagc gaaagaccaa
     6421 gtcaaagatg ctgcggctga tgcaaaggca agtgccgagg aagctgtaac tgaagccaaa
     6481 gaagctgtaa ctgaagccaa agaagctgta actgaagcca aagaagctgt aactgaagca
     6541 gctaaagata ctttgaacaa agctgccgac gcgactcagg aagcggcaga caaaatgaaa
     6601 gatgccgcca aataatttgt tgccttggca aaaatgatgg gatgccgcct gccggcaacc
     6661 caaacgaaac cgcctgaaga ttttcaggcg gtttttgagt tgtatgcccc ttgtttttta
     6721 cgcctgcatg accgttccga gcagatgtgc cgcgcatatc gggatgttgc ggacaggcaa
     6781 atgccgtctg gacagggttt ggacggcatt tgttccgtaa ggttcagacg acctcgactt
     6841 taaacggcat attgattttt tgccattgga cgctttcata ttccaatgcg tcggcaatca
     6901 ggggatggcg ttccagccat tccctgtcaa tacgcaggat gaagccgcag ctttccgtat
     6961 ccgtgcgcaa ctgcatattt ttcgggaaag acaggtcttg gcgcgaacgg cagaacaggg
     7021 cagcaaggcg cagggacaaa acggcatacc acaacatttc gttggtgccg atgatgccgc
     7081 tcattttttt catatcgccg cgatgaccga tgaccagttg ggcaagtatg gtctgttctt
     7141 tgcgtgagaa acccggcata tcggcgtttt cgaggatgta ggcggaatgc ttgtgatagc
     7201 cggtgtgggc gatgtccaaa ccgatttcgt gcagcgcggc ggcgcgtccg agatactgtt
     7261 gccacaaggc aagctcttga actgtaacgt ttttagcgtg gcagaggctg tccataaagg
     7321 tttgcgcggt ctcggcggtg cgtttcgcct gattgaggct gacgtggtag cggtgttgga
     7381 actcggcaac cgtttgtccg cgcatatctt cgtttaaacc gcgcccgatc aaatcgtaaa
     7441 acacgccgtc gcgcagggcg gcttcggtta cggtcatcct gtcgagtttc atttcctcaa
     7501 acgccgccat catcacggca agtccgccgg caaaaacttc gatgcgttcc ggtttcaggt
     7561 tttcaaattt ggcttttttg accgaaccgg cttcgatgat gcgttcggcg agggcgcgca
     7621 tgcctttgta ggtaatgtcc gcctcttggg gcatttcggc ggcaagcacg tcgcggatgg
     7681 attttgccga acccgatgtg ccgacggcga aatcccaacc ttcgcgcctc atatttttgc
     7741 tgatgcgctg gatttcgttg cgggcggcgg aaatggcaga ttggaagtct ttggcggtga
     7801 ttttgttttg gaagaagcgc aggctgtagg ttacgcagcc caagggcagg ctttcagtaa
     7861 tgtcgggatt cagcgtcgag ccgatgacaa attctgtcga accgccgccg atgtcgataa
     7921 ccagcatttt gccgccgccc ggggggaggg tgtggatcac gccggtataa atcagccgcg
     7981 cctcttcgcg cccggcgatg atttcgatgg ggaaacccag tgccgcttcg gctttgggaa
     8041 ggaaatctgc gatgtttttg gcgacgcgga atgtattggt tgccacggcg cgtacctgtt
     8101 cagggcggaa gccgcgcagg cgttcgccga attttgccag acagtccaaa gcctgttctt
     8161 gggaagcggc actcaggttt ttctgttcgt ccagtccggc ggcgaagcgc accatctgtt
     8221 tgaacgaatc gatgactttt aattgtccgt tgttgttttc gcaaatctgg aggcggaaac
     8281 tgttggaacc caaatcgacg gaggcgagga tgtttgcggg ggtggtggtc atggcggata
     8341 tcggtggggg aaaaacgcaa tgttactctg acggcgcagg cgttgacaat aaatgatgcg
     8401 gcggtttttg attctgtcca cggatgttgc cgacggcatt ttttgcgctt atttgaaatc
     8461 cttttccacg ctcatgaaaa tctgcgtgtt tttgcgtgtg taaaaacttt tcatattgct
     8521 gtcgattttc agatagcgga aattgagttg cggcgtaaag cccttccaag agattttgtc
     8581 gtgccaaaac gacaggtttg cctgatattc gtggtctttg cgcgggaagc ggtacacaat
     8641 ggtcccgggc gcgtcaaacg tcctgcgtgt atagcgcagg tttgcccgca gacccaagcc
     8701 gccgtcgaac gttttgaccg cgccgatacg caaacccttg cggacggaag cctgttccgc
     8761 ctccttcgtc aagtcgtgcg accagtccgc cccgccgtaa agcagccagt ctttcggcgc
     8821 ggaatacatc agcgtcgcgc ccgccagcgg catatggctg tcgtatcggg cggcggtgcg
     8881 gtcttcctga taatgcttcc acatattgcc cgcgtttagt gtcaaccgcc agcgttcgct
     8941 caagtgttgg gagaaatcgg cattaaagcc gccgacgaaa ttgtatcggc tgccgcctaa
     9001 gaggttttgc ccgacaaacg gcacgatgcc gaacgagcgc gttaccgaac gatttttata
     9061 gccgagcgac aggtgcaggc actgttcgct gaaatctttg ttatcccaat aatgcacgcc
     9121 gccgccgctg atgccgccgt agaggaaatg atgcccgccc gcattgattt cgcgcgacac
     9181 gcctaagccc tagcgcaaac cgtgtgcctt ttgcggcagg ctgtcggcgg ttttcgtcca
     9241 gcttctgccc gcaaattcaa tcgttttttt ggacgaagcg ttgtttatag cggattaaca
     9301 aaaatcagga caaggcgacg aagcctcaga cagtacagat agtacggaac cgattcactc
     9361 ggtgcttcag caccttagag aatcgttctc ttcgagctaa ggcgagacaa cgccg
//
LOCUS       DAXIFS010000064         9385 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.064, whole genome shotgun sequence.
ACCESSION   DAXIFS010000064 DAXIFS010000000
VERSION     DAXIFS010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9385
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.064"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(58..1851)
                     /locus_tag="ACFOCA_001081"
     CDS             complement(58..1851)
                     /locus_tag="ACFOCA_001081"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFC6987813.1"
                     /translation="MQLDIDRLVAYFGGVNALAEALKQHDPENAATTAAIYKWRTRGS
                     LPLAQLQKLTALAESQGRPLDLNAFLQKNESLERTEMTQTNRVIIFDTTLRDGEQSPG
                     AAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTVCSLSRAIE
                     RDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV
                     EFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIVKTPNG
                     GKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRH
                     DLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRET
                     YEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKELADKK
                     REIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRASATG
                     SGPVDAIFKAIESVAQSGATLQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADTD
                     VLVATAKAYLSALSKLEFSAAKPKAQGSGTI"
     gene            2096..3205
                     /gene="proB"
                     /locus_tag="ACFOCA_001082"
     CDS             2096..3205
                     /gene="proB"
                     /locus_tag="ACFOCA_001082"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFC6987814.1"
                     /translation="MKYKRIVFKVGTSSITHSDGSLSRGKIQTITCQLAALHHAGHEL
                     VLVSSGAVAAGFGALGFKKRPVKIADKQASAAVGQGLLMEEYTANLSSDGIVSAQILL
                     SRADFADKRRYQNAGGALSVLLQRRAVPIINENDTVSVEELKIGDNDTLSAQVAAMIQ
                     ADLLVLLTDIDGLYTGNPNSNPDAVRLDKIEHINHEIIEMAGGSGSANGTGGMLTKIK
                     AATIATESGVPVYICSSLKPDALAEAAEHQADGSFFVPRAKGLRTQKQWLAFYSESRG
                     SVYVDEGAEHALSEQGKSLLMSGIAGIEGHFSRMDTVTVYSNATKQPLGKGRVLFGSA
                     AAEDLLKSRKAKGVFIHRDDWISITPEIRLLLTEF"
     gene            3218..4480
                     /locus_tag="ACFOCA_001083"
     CDS             3218..4480
                     /locus_tag="ACFOCA_001083"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFC6987815.1"
                     /translation="MSNTQKQLALAKAAKKSVNTADTEEKNRALLAMADSLEAAAADI
                     LAANRLDLEAAAGNIPESMTDRLLLDEKRIGAMADGIRAVAALPDPVGEILETSTLPN
                     GLEIVKKRVAMGVIGIIYESRPNVTSDAAALALKSGSAVVLRSGKDAFQSARAIVAAL
                     KTGLAQTRIDPDALQLIEDTGRESSYEMMRAKDYLDLLIPRGGAGLIRAVVENAVVPV
                     IETGTGIVHIYIDKDADWDKALRIVYNAKTSRPSVCNSMEVLLVHEDIAADFLPKLER
                     LLVRNRIEAGLPPVRFRLDPQAARHIGGEAAGADDFDTEFLDYILAVKTVASVEEAVW
                     HIETHSTHHSDGIVTENRHAADYFTTHIDSAAVYVNASTRFTDGGEFGLGCEMGISTQ
                     KLHARGPMGLKELTSYKYIVQGTGQVRE"
     gene            complement(4705..7737)
                     /locus_tag="ACFOCA_001084"
     CDS             complement(4705..7737)
                     /locus_tag="ACFOCA_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6987816.1"
                     /translation="MFWIVLIVILLLALAGLFFVRAQSEREWMREVSAWQEKKGEKQA
                     ELPEIKDGMPDFPELALMLFHAVKTAVYWLFVGVVRFCRNYLAHESEPDRPVPPASAN
                     RADVPNASDGYSDSGNGTEEAETEAAEAAEEEAADTEDIATAVIDNRRIPFDRSIAEG
                     LMPSESEISPVRPVFKEITLEEATRALNGAALRETKKRYIDAFEKNETAVPKVRVSDT
                     PMEGLQIIGLDDPVLQRTYSRMFDADKEAFSESADYGFEPYFEKQHPSAFSAVKAENA
                     RNAPFRRHAGQAEAKSPDVSQGQSVSDGTAVRDARRRVSVNLKEPNKATVSAEARISR
                     LIPESRTVVGKRDVEMPSETENVFTETVSSVGYGGPVYDETADIHIEEPAAPDAWVVE
                     PPEVPKVPMPAIDIPPPPPVSEIYNRTYEPPSGFEQAQRSRIAETDHLADDVLNGGWQ
                     EETAAIADDGSEGAAERSSGQYLSETEAFGHDSRAVCPFEDVPSERPSCRVSDTEADE
                     GAFQSEETDAVYEHLPTTDLLLPPLFNPGATQTEEELLENSITIEEKLAEFKVKVKVV
                     DSYSGPVITRYEIEPDVGVRGNSVLNLEKDLARSLGVASIRVVETIPGKTCMGLELPN
                     PKRQMIRLSEIFNSPEFAESKSKLTLALGQDITGQPVVTDLGKAPHLLVAGTTGSGKS
                     VGVNAMILSMLFKAAPEDVRMIMIDPKMLELSIYEGIPHLLAPVVTDMKLAANALNWC
                     VNEMEKRYRLMSFMGVRNLAGFNQKIAEAAARGEKIGNPFSLTPDDPEPLEKLPFIVV
                     VVDEFADLMMTAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI
                     AFQVSSKIDSRTILDQMGAENLLGQGDMLFLPPGTAYPQRVHGAFASDEEVHRVVEYL
                     KQFGEPDYVDDILSGGGSEELPGIGRSGDDETDPMYDEAVSVVLKTRKASISGVQRAL
                     RIGYNRAARLIDQMEAEGIVSAPEHNGNRTILVPLDNA"
     gene            7902..8582
                     /locus_tag="ACFOCA_001085"
     CDS             7902..8582
                     /locus_tag="ACFOCA_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HFC6987817.1"
                     /translation="MIFQTVWFSDVVLSVSWIVLILILAASAPSAFRSLARYRSALPL
                     CTVIFSAAWCLNASAGGGQLAQMNYHLLAVNLVALMVGTSAAFWLAALLMLPYCLLFA
                     GSAGAYPPNALVLILPALAVNRLSRMLVNRLPPNIFIFIFVNGFLASAAGILLTGLVL
                     TGILDAANAFPSEILWTTALPVFILLACAEAFLSGISTAIFVALKPHWINTFDDNRYL
                     KSDRGIWR"
     gene            8611..8970
                     /locus_tag="ACFOCA_001086"
     CDS             8611..8970
                     /locus_tag="ACFOCA_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFC6987818.1"
                     /translation="MLSNIIPLSIGAALGATARWLLNLAVPAAMSPATGNLFANWTGA
                     LLIGIFAETINHPQWKLLLITGFLGSLTTLSGFSLETVTLLQSNRPASALANIFLHTA
                     GSLLLTWLGLKIGAAVK"
     gene            complement(9103..>9385)
                     /gene="mafI"
                     /locus_tag="ACFOCA_001087"
     CDS             complement(9103..>9385)
                     /gene="mafI"
                     /locus_tag="ACFOCA_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protein MafI"
                     /protein_id="HFC6987819.1"
                     /translation="GDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGFCWDISAEKVV
                     FYNNEFDEEDGWPDLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
BASE COUNT         2054 a         2628 c         2461 g         2242 t
ORIGIN      
        1 gccgcaatgc cgtctgaagc ctttttatgc ttcagacggc atcgtctgtt ttcacgctca
       61 aatcgtaccg ctgccttgcg ctttcggttt ggcggcacta aattccagtt tgctcaaagc
      121 ggaaaggtag gctttggcag tggcaaccaa aacgtcggta tccgcgccct gaccgttgac
      181 gacgcggttg ccgcgtgcca gacggacgct ggtttcgcct tggctttccg taccttgcgt
      241 gacggcgttg acggaataaa tctgcaaagt cgcgccgctt tgcgccacgc tttcaatcgc
      301 tttgaaaatt gcatcaaccg gaccggaacc ggttgcggaa gcgcgttttt cttcgccttt
      361 gatgctgaac acgatgtcgg cgcgcggctc ttcgccggtt tcggtgctga ttttttggga
      421 gatgaatttg tagctctcgg cattcatgct gcccatttcg tcggatacca gtgcgtgcag
      481 gtcttcatcg aagatttcgc gttttttgtc ggcgagttct ttgaagcggg caaacgcggc
      541 gttcagtgcc tcttcgcttt ccaactcgat gcccaaatcc gccagcttgg ttttgaaggc
      601 gttgcggccg gacaatttgc ccaagctcaa acggtttgtt gcccagccga ccgattcggc
      661 ggacataatc tcgtaagttt cgcggtgttt cagcaccccg tcctgatgga tgcccgattc
      721 atgcgaaaag gcattggcac cgacaatggc tttgttgggc tgcacgggat agcccgtaat
      781 ggtggacacc agtttggacg aaggcacgat ttgcgtggta tcgatgccgg tttccaagcc
      841 gaacaagtcg tggcgcactt tcaacgccat cacgatttct tcaaccgaag cattgcctgc
      901 acgttcgccc aagccgttga cagtacattc cacctgacgc gcaccgcctt ttaatgcggc
      961 aagcgaattg gcaaccgcca agcccaaatc gttgtggcag tgtgccgacc aaacgacttt
     1021 gccgccgttg ggcgttttga caatcagttc gcggaaaaat tcttcggttt tgtacgggat
     1081 ggaatagccg acggtatcgg gaatattgat ggtggtcgcg cccgcttcaa ttaccgcgcc
     1141 gcagatttcg gcaaggaaat cgatttccga acgcaacgcg tcttcgcagg aaaattccac
     1201 atcgtcggtg tattcacgag cgattttcac cgctttgacc gccgcctcaa tcacctgctt
     1261 cggcttcatc ttcaatttgt actccatatg gatggggctg gtggcgatga aggtgtggat
     1321 gcgttttttc ggcgcgggcg caacggcctc acccgcctga cggatgtccc gctcgatggc
     1381 gcgggacaat gaacagaccg ttgatttggt aatggttttc gcaatcgcat tgaccgcctc
     1441 gaaatcgccc gggctggcag cggcaaaacc cgcttcgatg atgtccacac ccaatttttc
     1501 cagctggcgg gcgacgcgga ttttttcctc tttggtcata gcggcgccgg gcgactgctc
     1561 gccgtcgcgc agggtggtat caaaaataat tacgcggttg gtctgtgtca tttctgttct
     1621 ctccagagat tcgttttttt gtaaaaaagc attcaaatcc agcggtctgc cttgcgattc
     1681 ggcaagcgcg gtcagctttt gcagttgcgc cagaggcagc gagccgcgcg tgcgccattt
     1741 atagatggcg gcggtcgtcg cggcattttc gggatcgtgc tgtttcaacg cttcggcaag
     1801 cgcgttcacg ccgccgaaat aagcaaccaa gcggtctata tctaattgca tggtagtcct
     1861 tgtctaaaat aaatcagcct acagcagaaa tatggacagg attatacgca ttttggacaa
     1921 aacggcaata taaatttgaa aaatctcaat aagccgccat agattttatt aattttatac
     1981 attttgtcca ttttattgca gacgcggcgt gattgttgac aattgcggca gaacagggca
     2041 aattcggcgg cacaaggtgg caacgagaca ggacaaacca acaaggatgg aaacaatgaa
     2101 atacaaaaga atcgtattta aagtcggcac atcttcgatt acccattcgg acggcagtct
     2161 ctcgcgcggc aaaatccaaa ccatcacctg ccagcttgcc gcattgcatc atgcgggaca
     2221 cgagctggtc ttggtgtctt ccggcgcggt tgcggcaggg ttcggtgcgc tgggtttcaa
     2281 aaaacgtccg gtcaaaatcg ccgacaaaca ggcttccgcc gccgtcgggc aggggctgct
     2341 gatggaagaa tatacggcaa acctgtcttc agacggcatc gtgtccgcac aaatcctgct
     2401 cagccgcgcc gactttgccg acaaacgccg ctaccaaaat gccggcggcg cactttccgt
     2461 gctgctgcaa cgccgcgccg tccccatcat caatgaaaac gatacggttt cggttgagga
     2521 attgaaaatc ggcgacaacg acacattgag tgcgcaagtg gcggcgatga tacaggcaga
     2581 cctcttggtg ctgctgaccg acatagacgg tctttacacg ggcaacccga acagcaatcc
     2641 cgatgccgta cggctggaca aaatcgaaca catcaaccat gaaatcatcg aaatggcggg
     2701 cggctcgggt tcggcaaacg gcacaggcgg tatgctgacc aaaatcaaag cggcgacgat
     2761 tgcgaccgag tccggcgtac cggtgtatat ctgttcctcg ctcaaacccg atgcacttgc
     2821 cgaagctgcc gaacatcagg cggacggctc gtttttcgtc ccccgtgcca aaggtttgcg
     2881 gacgcagaag caatggctgg cgttctattc cgaaagccgg ggcagcgttt atgtggacga
     2941 aggtgcggaa cacgctttgt ccgaacaggg gaaaagcctg ctgatgtcgg gcattgccgg
     3001 aatcgaaggg catttttccc gtatggacac tgtaaccgtg tacagcaacg caaccaaaca
     3061 gcctttgggc aaagggcgcg tcctgttcgg ttctgccgcc gccgaagacc tgctcaaatc
     3121 gcgtaaggcg aaaggcgtgt tcatccatcg ggacgactgg atttccatca cgcccgaaat
     3181 acgcctgctt ctgaccgaat tttagaaaag gaaacccatg tcaaacacac aaaaacagct
     3241 tgcccttgcc aaagcggcaa aaaaatccgt caacacggcg gatacggaag aaaaaaaccg
     3301 cgcgctgctt gctatggcgg acagcttgga agcggcggcg gcagatattt tggcggcaaa
     3361 ccgtttggat ttggaagcgg cggcaggcaa cattcccgaa agcatgaccg accgcctttt
     3421 gttggacgaa aaacgcattg gcgcgatggc ggacggcatc agggcggttg ccgcgctgcc
     3481 cgaccccgtg ggcgaaatac tggaaacctc gactctgccc aacggcttgg aaatcgtcaa
     3541 aaagcgtgtg gcgatgggcg ttatcggcat tatttacgaa agccgcccga acgttacgtc
     3601 cgatgcggcg gctttggcac tgaaaagcgg cagcgcggtc gtactccgca gcggcaaaga
     3661 tgcattccaa tccgcacgcg ccatcgttgc cgccctgaaa acggggttgg cacaaacccg
     3721 catcgacccc gacgcgctcc agttgattga agacaccggg cgcgaaagca gttacgaaat
     3781 gatgagggcg aaagattatc tagacctgct gattccgcgc ggcggggcgg ggctgatacg
     3841 ggcggtggtt gaaaatgccg tcgtgccggt cattgaaacg ggaacgggca tcgtccacat
     3901 ttatatcgac aaggacgcgg attgggacaa ggcgctccgt atcgtgtaca acgccaaaac
     3961 cagccgcccg tccgtgtgca actcgatgga agtgctgctg gtgcatgaag acattgctgc
     4021 cgacttcctg cccaagctcg aacggctgtt ggttcgcaac cgtatagaag ccggactgcc
     4081 gcccgtccgc ttccgtttgg atccgcaggc ggcgcggcat atcggcggcg aagcggcggg
     4141 tgcagacgat ttcgataccg agtttttaga ctacatcctc gctgtgaaaa ccgtcgcttc
     4201 ggtcgaagag gcggtctggc acatcgaaac ccacagcaca caccattcag acggcatcgt
     4261 taccgaaaac cgccacgctg cggactattt cacgacccat atcgattctg ccgccgtgta
     4321 tgtcaacgcg tccacgcgct ttaccgacgg cggcgaattc ggcttgggtt gcgaaatggg
     4381 catctccacg caaaaactcc acgcccgggg tccgatgggt ttgaaagagc tgacgagtta
     4441 caaatacatc gtacaaggca cgggacaggt cagggaataa tccgaattca aatgtctgat
     4501 atagtggatt aactttaaac cggtacggcg ttgcctcgcc ttagctcaaa gagaacgatt
     4561 ctctaaggtg ctgaggcacc aagtgaatcg gttccgtact atttgtactg tctgcggctt
     4621 cgtcgccttg tcctgatttt tgttaatcca ctataaaaat gccgtctgaa acagtcttca
     4681 gacggcattt ccatttgcaa aaaatcaagc attgtccaag gggacgagaa tcgtacggtt
     4741 gccgttgtgt tccggtgcgg acacaatgcc ttccgcctcc atctggtcaa tcagacgcgc
     4801 ggcgcggttg tagccgatac gcaaggcgcg ctgtacgccc gaaatgctgg ctttgcgcgt
     4861 tttcaggaca acggatacgg cctcgtcgta catcggatcg gtttcgtcgt cgccgctgcg
     4921 cccgatgccg ggcagctctt cgctgccgcc gccgctcaaa atatcgtcaa catagtccgg
     4981 ttcgccaaac tgtttcaaat attcgaccac gcggtgcacc tcttcatccg aggcaaatgc
     5041 gccgtgaacg cgctgcggat aggcagtacc cggcggcagg aacagcatat cgccctgacc
     5101 gagcaggttt tccgcgccca tttggtcgag aatcgtgcgg ctgtcgattt tgctggacac
     5161 ttggaacgcg atacgcgtcg ggatgttcgc cttaatcaga cccgtgatga catcgacgct
     5221 ggggcgttgt gtggcaagaa tcaaatggat gcctgccgcg cgggcttttt gggcgaggcg
     5281 ggcaatcagt tcctcgattt tcttgcctgc cgtcatcatc aaatcggcaa actcatcgac
     5341 cacgaccacg ataaacggca gtttttccaa aggttcggga tcgtcgggcg tgaggctgaa
     5401 cgggttgccg attttctccc cccttgctgc ggcttcggcg attttttgat tgaaacccgc
     5461 aagattgcgc acgcccataa agctcatcag gcggtagcgt ttttccattt cgttaacaca
     5521 ccagttcagc gcgtttgccg ccagcttcat atcggtaacg acaggggcga gcaggtgcgg
     5581 gatgccttcg taaatgctca attccagcat tttcggatcg atcataatca tacgcacgtc
     5641 ttccggcgcg gctttgaaaa gcatagacag aatcatcgcg ttgacaccca ccgatttgcc
     5701 cgaaccggtc gtgccggcaa ccaacaaatg cggcgctttt cccaagtcgg ttacgacggg
     5761 ctgtccggtg atgtcctgac cgagcgcgag cgtcagcttg gatttggatt cggcaaactc
     5821 gggtgaattg aagatttcgc tcaggcgtat catttggcgt ttcgggttcg gaagttccaa
     5881 acccatacag gttttgccgg ggatggtttc gacaacgcgg atggaagcca cgccgagcga
     5941 acgcgccaag tctttttcca gattcagaac ggaattgccg cgcacgccga catcgggttc
     6001 gatttcataa cgcgtaatca cggggccgga ataagaatcg acaaccttga ccttgacttt
     6061 gaactccgcc aatttttctt cgatggtgat gctgttttcc aacagttctt cttcggtttg
     6121 cgtcgccccg ggattgaaca gcggcggcag aagcaggtcg gttgtcggca ggtgttcgta
     6181 taccgcatcg gtttcttccg attggaacgc cccttcatcc gcttccgtat ccgatacccg
     6241 gcaggacggg cgttcagacg gcacatcttc aaacggacaa accgcccgac tgtcatgccc
     6301 gaacgcttcg gtttccgaca gatattgccc gcttgaccgc tctgccgcac cctcactgcc
     6361 gtcatccgca atagcggcgg tttcctcctg ccaacctcca ttcaaaacat catcggcaag
     6421 atggtcggtt tcggcaatgc ggctgcgttg cgcctgctcg aatcctgacg gcggttcata
     6481 ggtacggttg tagatttccg atacgggagg cggcggcgga atatcgattg cgggcatggg
     6541 aactttcggc acttcgggtg gttcgaccac ccaagcatcg ggcgcggcag gttcttcaat
     6601 atggatatcg gcagtttcat cataaaccgg accgccgtat cccacagacg aaacggtttc
     6661 cgtgaaaaca ttttcggttt cagacggcat ttcgacatcc cgtttcccga caaccgtccg
     6721 actttccgga atcaggcgcg aaatccgcgc ctccgcagaa accgttgcct tgttcggttc
     6781 tttcaaattg acggaaacgc ggcggcgggc atcgcggacg gctgtgccgt ctgaaacgga
     6841 ctgtccttgg gaaacatccg gggattttgc ctccgcctgc cctgcatgac ggcggaacgg
     6901 cgcattccgt gcattttcgg ctttgactgc agaaaaggca gacggatgct gcttctcaaa
     6961 atacggctca aatccgtaat ccgcagactc ggaaaacgct tctttgtccg catcgaacat
     7021 acgggaatac gtgcgttgaa gcacagggtc gtccaaaccg ataatctgca gcccttccat
     7081 cggggtatcg gacacgcgga ctttggggac cgctgtttcg tttttctcaa atgcatcgat
     7141 atagcgtttt ttcgtttccc ttaaagccgc gccgtttaag gcacgcgttg cttcttccaa
     7201 agtgatttcc ttaaaaaccg gacggacggg cgaaatttcg ctttcagacg gcatcaaccc
     7261 ttcagcaata ctccggtcga atgggatgcg gcggttgtcg attacggcag ttgcaatgtc
     7321 ttccgtatcg gcagcctctt cctccgcagc ttctgctgct tccgtttccg cttcttccgt
     7381 cccgtttcca ctgtctgaat atccgtcgga tgcgttcgga acatccgcac ggtttgcaga
     7441 agcaggcgga acaggcctat ccggttcgga ttcgtgcgcc agatagtttc ggcagaaacg
     7501 gacgacaccg acgaacagcc aatacactgc cgttttgacg gcatggaaaa gcatcagggc
     7561 aagttcggga aaatcgggca taccgtcttt gatttcaggc agctccgcct gtttttcccc
     7621 tttcttttcc tgccacgcag aaacctcgcg catccactcg cgttcggatt gtgcgcggac
     7681 aaaaaacagg ccggcaagcg caagcaacaa aataacgatc aaaactatcc aaaacatatg
     7741 ccgtttcccg caagacaaac gattaaacgg gtttatttta acgtgtttcc atcccaaaaa
     7801 aaacaaccag ccggcaattc tgccgaaacc gattcggctt tcggtttgcc cccgccgaca
     7861 gtataatagc cgtcccttcc cttaatcttt gcggcattgc catgattttc caaacagtct
     7921 ggttttcaga tgtggtactg tcggtttcgt ggattgtcct tatcctgata ctggcagctt
     7981 ccgcgccgtc cgcattccgc tcgcttgccc gctaccgttc cgcccttcca ctgtgtaccg
     8041 taattttttc cgcagcatgg tgtctgaacg cctctgccgg cggcggacag cttgcccaga
     8101 tgaactacca tctgctcgcc gtcaatctgg ttgcactgat ggtgggcact tccgccgcct
     8161 tttggcttgc cgcgctgctg atgctgccct actgcctgct gtttgccggt tctgccggcg
     8221 catatccgcc gaacgctttg gtgctgattc tgcccgcgct tgccgtcaac cgcctgtcgc
     8281 gtatgctggt caaccgcctg ccgcccaata ttttcatctt tattttcgtc aacggctttc
     8341 tcgcttccgc cgccggcatt ctgttgaccg ggctggtgct gaccggtatt ttggatgctg
     8401 caaacgcttt tccgtccgaa atattgtgga cgaccgccct gcccgtcttt attctgctgg
     8461 cgtgtgcgga agcttttctc agcggcattt caactgccat atttgttgca ctgaagcccc
     8521 attggatcaa cactttcgac gacaaccgct atctgaagtc cgaccgcggc atatggcggt
     8581 agccttcaga cggcatagac aggcaaaacc atgctttcca acatcatccc cctttccatc
     8641 ggtgcggcac tcggtgcaac ggcgcgttgg ctgctcaacc tcgccgttcc tgccgccatg
     8701 tctcccgcca cgggcaacct gtttgccaac tggacgggcg cgctgctcat cggcatcttt
     8761 gccgaaacca tcaatcaccc gcaatggaag ctgctgctga ttaccggttt tctcggcagc
     8821 ctgaccacgc tttccggatt ttcactggaa accgtaaccc tgctccaatc gaatcgtcct
     8881 gcttcagcac ttgccaatat tttcctacac acggcaggtt cgctgctgct gacttggctc
     8941 gggctgaaga taggggcggc agtcaaataa ccgcaacaaa ttgcttcctt tggttttgac
     9001 acaaactata caagtcctaa catcttaatc atggcgcagc atataagcgt ggatttgcag
     9061 cccaatctat actttctgat tctattcatt aagccattat gcttattcct caatcacggt
     9121 ttccaccacc gaatgaatac ttttaggcaa ttgcaaaaaa gcattccaag caattaaagc
     9181 agttttaaaa gtatgcagcg aacagcttaa atcaggccag ccgtcttctt catcaaattc
     9241 gttgttatag aaaactactt tttcagcaga aatatcccag caaaaacctt gtccacctcc
     9301 tgaataaact tcattgggat tattttctgc ttgatggata aattctaaat tttcatctat
     9361 gtctttttgt agataaaggt ctcct
//
LOCUS       DAXIFS010000065         9367 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.065, whole genome shotgun sequence.
ACCESSION   DAXIFS010000065 DAXIFS010000000
VERSION     DAXIFS010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9367
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.065"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..187)
                     /locus_tag="ACFOCA_001088"
     CDS             complement(<1..187)
                     /locus_tag="ACFOCA_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987820.1"
                     /translation="MPSERLSDGIFPCVLNRIHETPDAFGGNVGCRAMFGGDQRTKYA
                     GKGLMPSEGSDGIGIGES"
     gene            complement(205..762)
                     /locus_tag="ACFOCA_001089"
     CDS             complement(205..762)
                     /locus_tag="ACFOCA_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6987821.1"
                     /translation="MDALKLLTNRRSSKKLKPPAPDAAELEQIFQAATQVPDHGNMRP
                     FRFTVIQGEVGLQRFRDVLKQTVAELNFGDDAMKKAEKVGNMAPMVIGVTFAPNRDVP
                     KPKPEWEQMLTAGCAAYALQLAATAQGFDNVWITGMWVNSPLLREAFGCADKDKIIGL
                     MMVGTPTEEVHKPKNTDLEAFVSHW"
     gene            complement(838..2472)
                     /locus_tag="ACFOCA_001090"
     CDS             complement(838..2472)
                     /locus_tag="ACFOCA_001090"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6987822.1"
                     /translation="MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGT
                     GADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKS
                     MLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAA
                     VSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLD
                     MAVVQNRPVGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSC
                     GTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKV
                     PNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYT
                     EAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYV
                     SDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENE
                     YSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR"
     gene            complement(2542..2875)
                     /locus_tag="ACFOCA_001091"
                     /pseudo
     CDS             complement(2542..2875)
                     /locus_tag="ACFOCA_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221902.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2875..3981)
                     /gene="serC"
                     /locus_tag="ACFOCA_001092"
     CDS             complement(2875..3981)
                     /gene="serC"
                     /locus_tag="ACFOCA_001092"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFC6987823.1"
                     /translation="MSLYPIYNFSAGPAVLPEAVLETARQEMLDYNGTGFPVMAMSHR
                     SEMFLSILHHAEQDLRQLLKVPDNYKILFLQGGATTQFNMAAMNLAHGFRTADAVVTG
                     NWSRIAYEQMSRLTDTEIRLAAHGGEQFDYLDLPPVETWDVAPDSAFVHFAVNETVNG
                     LQYREVPCLSEGMPPLVCDMSSEILSREFDVADYGLIYAGAQKNIGPAGVTVVIVRED
                     LLERCPNDIPDVFNYRSHINRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRL
                     KAQTLYETIDGSDGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGY
                     KTVGGMRASIYNAMPLEGVRALADFMRDFQRRYG"
     gene            4346..4777
                     /gene="rimP"
                     /locus_tag="ACFOCA_001093"
     CDS             4346..4777
                     /gene="rimP"
                     /locus_tag="ACFOCA_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFC6987824.1"
                     /translation="MDIQTILEKTLPGLGYELVDFELTAQGTLRVFIDKESGITVEDC
                     ATVSNHLSRVFMVEDIDYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQK
                     NFIGKIEGCENDTVTVSFDGKTVQIELGNIDKARLRPEFKF"
     gene            4805..6307
                     /gene="nusA"
                     /locus_tag="ACFOCA_001094"
     CDS             4805..6307
                     /gene="nusA"
                     /locus_tag="ACFOCA_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFC6987825.1"
                     /translation="MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHM
                     DVRVQINRDTGEYQTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQL
                     PNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVV
                     AGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYA
                     NEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSG
                     ERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVR
                     LASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEV
                     AYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRNLEGIDADM
                     LRSLAEAGITTRDDLAELAVDELIEITGVNEETAKAVILTAREHWFTEDK"
     gene            6319..9207
                     /gene="infB"
                     /locus_tag="ACFOCA_001095"
     CDS             6319..9207
                     /gene="infB"
                     /locus_tag="ACFOCA_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFC6987826.1"
                     /translation="MSNTTVEQFAAELKRPVEDLLKQLKEAGVSKNSGSDSLTLDDKQ
                     LLNAYLTKKNGSNSSTISIRRTKTEVSTVDGVKVETRKRGRTVKIPSAEELAAQVKAA
                     QTQAAPVRPEQTAEDAAKARAEAAARAEARAKAEAEAAKLKAAKAGNKAKPAAQKPTE
                     AKAETAPVAAETKPAEESKAEKAQADKMPSEKPAEPKEKAAKPKHERNGKGKDAKKPA
                     KPAAPAVPQPVVSAEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAMKQQAEQQ
                     AKTAQEAKTGRQRPAKPAEKPQAAAPAVENKPVNPAKAKKEDRRNRDDEGQGRNAKGK
                     GGKGGRDRNNARNGDDERVRGSKKGKKLKLEPNQHAFQAPTEPVVHEVLVPETITVAD
                     LAHKMAVKGVEVVKALMKMGMMVTINQSIDQDTALIVVEELGHIGKPAAADDPEAFLD
                     EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQHIGAYHVET
                     PRGVITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIAHAKAAGVPM
                     VVAVNKIDKEAANPERIRQELTAHEVVPDEWGGDVQFIDVSAKKGLHIDALLEAVLLE
                     AEVLELTAPVDAPAKGIIVEARLDKGRGAVATLLVQSGTLKKGDMLLAGTAFGKIRAM
                     VDENGKSITEAGPSIPVEILGLSDVPNAGEDAMVLADEKKAREIALFRQGKYRDVRLA
                     KQQAAKLENMFNNMGETQAQSLSVIIKADVQGSYEALAGSLKKLSTDEVKVNVLHSGV
                     GGITESDVNLAIASGAFIIGFNVRADASSRKLAENENVEIRYYNIIYDAIDDVKAAMS
                     GMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVVKRDSHVRLIRNNVVIHTGE
                     LASLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDIVEVARSL"
BASE COUNT         2505 a         2700 c         2375 g         1787 t
ORIGIN      
        1 ctgattcccc gataccgatg ccgtctgaac cttcagacgg catgagacct ttgcctgcgt
       61 acttggtacg ctggtcgcct ccgaacatgg cgcgacaccc gacatttccg ccgaacgcat
      121 cgggcgtttc atgaatccgg tttaaaacgc atggaaaaat gccgtctgaa agcctttcag
      181 acggcattgt gcttgagatt ccgtttacca atggctgaca aacgcttcca aatcggtatt
      241 cttgggctta tgcacttcct ctgtcggcgt gccgaccatc atcagcccga tgattttatc
      301 cttatccgca caaccgaaag cctcccgcaa caaggggctg ttgacccaca tccccgtaat
      361 ccagacattg tcgaatccct gagccgttgc cgccagttgc agcgcatacg ccgcacaacc
      421 cgccgtcagc atctgctccc attccggttt cggcttaggc acatcacgat tcggcgcaaa
      481 cgttaccccg atgaccatcg gcgccatatt gcccactttt tccgcctttt tcatcgcatc
      541 gtcgccgaaa ttcaattcgg caaccgtttg ctttaacaca tcgcgaaaac gttgcaatcc
      601 tacctcgcct tgaatcacgg taaaacggaa ggggcgcata ttgccgtgat cgggaacttg
      661 ggttgccgcc tgaaatattt gttccaactc cgccgcatcg ggggcggggg gcttcagctt
      721 tttggaagat cggcggttcg tcaataattt taaagcatcc atatcgttat actccggtca
      781 tcggtcgggt gttcggacac atatgccgtc cgaaggcttc agacggcata tccggcatca
      841 gcgcggacgg cggcaggctg ccaatatatc catttccttc cgataggttt ggctattgga
      901 aatgtccatc agccccaata ccgtgctgaa atagtggtcg tgcgaatatt cgttttccgc
      961 cgctttttgt ttgaggcatt ggaaatctat gcccccgtgt tggcggaagg ctttggaaaa
     1021 ccacataacc atcgggatat gcgtctgccc ggaaggcgcg atggcgtaag gcgcggcgtg
     1081 caggtacatc ccgttttcgc ccaaactttc gccgtggtcg gaaacataat gcaccacgct
     1141 ttccaaatcg tcgcggtttt caagtttgcg gataaccttg tcgataaact ggtccacata
     1201 caaaaccgta ttgtcgtaag tgttgaccag cgtggcgcgg gtgcatttgt tgatttcgtt
     1261 ggtgtcgcag gtcggcgtga atttgcgttc ggcttcggta tagcgttcgt aatacgtcgg
     1321 cccgtggctg ccgatggtat gcaggattaa aaccgcgtct ttatcgtttt tgttgaggac
     1381 ttcgtcgaac ttagtcagca ggatattgtc gagacactcg ccgttgcggc agtattcggg
     1441 caggttgagc gaggtaacgt cggtattcgg cactttgccg cacacgccct tgcagccgga
     1501 atcgttttcc aaccaggtaa cttccacgcc ggcgcgctgc acgatgtcca gcaggttgtc
     1561 ttggtgttcg gctttgattt cgtcataatc cgtgcggtcg aaggttgaga acatacacgg
     1621 cagggagtgc gcggtcgatg tgccgcagct tctgacctgc gggaaattga caatttcatc
     1681 gccgcgcgcg gcaagcagcg gcgtagtttg gcggctgtaa ccgttcaaac cccagttggc
     1741 ggcacgcgtg gtctcgccca cgaccagcac cacgaaacgg cgcaggctgc cgaccgggcg
     1801 gttttgcacg accgccatat ccaattgcgt ataaggaata ttggaacgct tccaatcttt
     1861 gtatttcgac acgcccgcgc cgatgaaatt agacggcaca atcagatggg ttactgattt
     1921 attgttgcgg aaaaacgagg cgtaatcctg atattgcaac attgcgatgc ccaacgcgca
     1981 caaaaaggaa acggcggcaa gcacaaggcg cgtcaaaagc tccttatacc aaacgcggta
     2041 tttaaccttg acggcgatat acgccagcgc gggcaatacg cccaaacata caatccacag
     2101 cacatagccc ggcgtaatca ggcgcgcgct ttcggcagcc gtagtttgca agacattatt
     2161 caacatcgac ttgttgaaat agatattgaa aaatatttct tggtaagaca ccgccgcact
     2221 gataaccaat atcaacggaa tcaatacctt atgcacgaaa ggcagggcaa tgacgtgaaa
     2281 aacgaaatta cttaaaaaaa acagcaccac cggcatcgta tagaggaaga tatccgcccc
     2341 ggtgccgtta aaaggatgaa gctcgacaac tttggcaaaa aaggcgtaat tcaataccag
     2401 cgaggaatac agggaaagga aggcaatcag cgcggaagag ccgagcttcg gcctcaggtt
     2461 cggttttatc atttggaatg tgtcggataa gggttggaaa aggcatccgg catttggaat
     2521 ccggattatt gaaaaagatt cttaattata aggcaacgga gcaaagcagg gcaagaaaac
     2581 ggcggctgtg cggggggttc cgcccgccat tcaaacgtcc ggcagacata aaaacatcgt
     2641 aagcaagatt cgaaccggtc tgcaaccgcc cctgccagaa aaacgggcaa agcatttcat
     2701 attggaaaaa cccggccgcg ccgccgacgg gacagtccgg cacaaacagc atcacgcccg
     2761 gattgaaaag gacggatagc cgccggcagc acaatcttac cacctccaaa acgccgccgg
     2821 agaacgccga aacagccgat gccgtctgaa gccgcttcag acaacatcgg gacatcaacc
     2881 gtaacgccgt tggaaatcgc gcataaaatc tgccaaagcc cgcacgcctt caagcggcat
     2941 cgcattataa atgctggcac gcataccgcc gacggtttta tagcccttaa gcaggcacaa
     3001 gccctgcaat tcggcttcca gcacaaaacg gcggtcaagc tcctcatccc ccgtttggaa
     3061 cacgacattc attttagaac gcgcattcgg acggatacgg ttgatataaa aaccatcgct
     3121 gccgtctatc gtctcataca aggtttgcgc cttcagccga ttgaccgctt caattttttt
     3181 cacaccgccc tgcgcctgta gccagcggaa caccagcccc gacatataaa tcgcgtaagt
     3241 tgacggcgtg ttgtacatac cgtcgcggtt gatgtgcgaa cggtagttga acacatcggg
     3301 aatatcgttc ggacaacgct cgagcaaatc ctcacgcaca atcaccaccg taactcctgc
     3361 cggcccgatg tttttctgtg cgcctgcgta aatcagtccg tagtcggcaa catcaaactc
     3421 gcgcgacaaa atctcgctgg acatatcgca caccagcggc ggcatgcctt ctgaaaggca
     3481 cggcacttca cggtattgca gcccgttgac cgtttcattg acggcaaaat ggacaaacgc
     3541 cgaatcgggt gcaacatccc acgtttccac aggcggcagg tcgagatagt cgaactgctc
     3601 gccgccatgc gccgccaaac ggatttccgt atcggtcaaa cggctcatct gttcataagc
     3661 gatacggctc cagttgcccg ttaccaccgc gtcggcagtg cggaaaccgt gtgccagatt
     3721 catggctgcc atattaaatt gggttgttgc tccgccctgc agaaacaata tcttatagtt
     3781 gtcaggcact ttcaaaagct gcctcaaatc ctgttccgca tgatgcagga tgctcaaaaa
     3841 catttccgaa cggtggctca ttgccatcac aggaaaaccc gtaccgttgt agtccaacat
     3901 ttcctgccgc gccgtttcca acacggcttc gggcaatacg gcagggccgg cggaaaaatt
     3961 gtaaatcgga taaagagaca tgatgcagcc ttgattctga acaataaccc gcccgatttt
     4021 aggcttgcag caggctttgt gcaaggatgg aaaatacctg tcctccgccc gattccatgc
     4081 cgcccgaaca cggaaaataa tatcaatata ttgatttaca aacataaaaa tcatgcacgc
     4141 gacaaataga tacatttgtt ttgtcaacaa tattcacgat ttcccattac aaacctccct
     4201 tacacccgct tttttccgtc ccaaaaacac aaaataaatc aacactttca tttctccgca
     4261 aaagcggtta taatcacgcc gatttttcaa ctttgacgaa aaatggccac ggggccattt
     4321 ttttattatg tacataggga gcagcatgga tatccaaacc atcctcgaaa aaaccctgcc
     4381 cggcctgggc tacgaactgg tcgatttcga actgaccgcg caaggaacat tgcgcgtgtt
     4441 catcgacaaa gaaagcggca ttaccgtcga agactgcgca accgtcagca accacttgag
     4501 ccgcgtcttc atggttgaag acatcgacta caaaaacctg gaaatttcca gccccggact
     4561 cgaccgcccc ttgaaaaaag ccgccgactt cgtgcgcttt gccggtcaga atgccaaaat
     4621 caaaacccgc ctgccgatag acggtcagaa aaactttatc ggtaaaatcg aaggctgcga
     4681 aaacgatacc gttaccgtat ccttcgacgg caaaaccgta caaatcgaat tgggcaacat
     4741 cgacaaagcc cgtctgcgcc ccgaattcaa attctaaaac acaacaatat tggagatgtt
     4801 caaaatgagt cgtgaaatgt tacagctggc agaagcactg gcaagcgaaa aaaacgttga
     4861 tgcggaagtc gtcttccaag cactggaatt cgccctgtct accgccgcca agaaaaaggc
     4921 agaccgcgaa cacatggacg tgcgcgtcca aatcaaccgc gacaccggcg aataccaaac
     4981 cttccgccgc tggctgattg tcgccgatga agactatacc tatcccgatg tcgaaaaaac
     5041 catcgaggaa atccaagagg aaattcccgg cactaccatc caaatcggcg aatactacga
     5101 agagcagctg cccaacgaag gcttcggccg ccaagccgcg caaaccgcca aacaaatcat
     5161 cctgcaacgc atccgcgatg ccgagcgcga gcagaatctg aacgagtttc tcgccgtcaa
     5221 agaagacatc gtgtccggca cggtcaaacg cgtcgaacgc cacggcatca tcgtcgaagt
     5281 cgttgccggc aaactggacg cgctgattcc gcgcgaccaa atgattccgc gcgaaaactt
     5341 ccgcagcggc gaccgcatcc gcgccctctt cctgcgcgtc gaagaaatcg gcaacaccgg
     5401 ccgcaaacaa gtcattctga gccgtacttc cggcgatttc ctcgtcaaac tgtacgccaa
     5461 tgaagtacct gaaattgcag acggcatgct tgaaatccgc gctgtcgccc gcgacccggg
     5521 acaacgtgcc aaagtcgccg tcaaagccaa cgaccagcgc atcgatccgc aaggcacctg
     5581 tatcggcgtt cgcggttcgc gtgtcaatgc cgtcagcaac gaattgtccg gcgagcgcat
     5641 cgatgtcgtc ctctggtcgc ccgaacccgc gcaattcgtg atgagcgcgc tctcacccgc
     5701 cgaagtcagc cgcatcgtca tcgacgaaga caaacacgcc gtcgatgtca tcgttgccga
     5761 agaccagctc gcgctcgcca tcgggcgcgg cggtcaaaac gtgcgccttg cttccgacct
     5821 gaccggctgg cagctcaaca tcatgacttc cgccgaggca gacgaacgca atgcggcaga
     5881 agatgccgcc atccgccgcc tgtttatgga tcacttgaac gtggacgaag aaaccgccga
     5941 cgtactggtt caggaaggtt ttgcaacctt ggaagaagtc gcctatgttc ctgccgccga
     6001 actgcttgcc attgaaggat ttgacgaaga aatcgtcgat atgctccgca accgcgcccg
     6061 cgatgccatc ctgaccatgg cgattgccgc cgaagaaaaa ctgggcgaag tgtccgacga
     6121 tatgcgcaac ctcgaaggca tagatgccga tatgctccgc agccttgccg aagcaggcat
     6181 taccacccgc gacgacttgg cagagcttgc tgtggacgaa ctgattgaaa tcaccggtgt
     6241 aaacgaagaa accgcaaaag ccgtcatcct gaccgcacgc gaacactggt ttaccgaaga
     6301 caaataaagg gggtacagat gagtaacaca accgtagaac aatttgccgc cgagctgaaa
     6361 cgccccgtcg aagacctgtt gaaacagttg aaagaagccg gcgtcagcaa aaacagcggc
     6421 agcgattccc tgacgctgga cgacaaacag cttctgaacg cctacctgac caagaaaaac
     6481 ggcagcaaca gcagcaccat cagcatccgc cgcaccaaaa ccgaagtcag caccgttgac
     6541 ggcgtaaaag tcgaaacacg caaacgcgga cgcactgtca agattccttc tgccgaagaa
     6601 ttggcagcac aggtaaaagc cgcccaaacc caagccgcac ctgtccggcc ggagcagacg
     6661 gcagaagacg cggcaaaagc ccgagccgaa gctgccgcac gcgcagaagc ccgtgccaag
     6721 gcagaagcgg aagcggcaaa actgaaagcg gcaaaagcag gcaacaaagc caaacctgcc
     6781 gcgcagaaac ccaccgaagc aaaagccgaa accgcacccg ttgcggcgga aaccaaaccc
     6841 gccgaagaaa gcaaagcgga aaaagcccaa gccgacaaaa tgccgtctga aaaacccgcc
     6901 gagcccaaag aaaaagccgc caagccgaaa cacgagcgaa acggcaaagg caaagatgcc
     6961 aaaaaaccgg cgaaacctgc cgcacctgcc gtgccgcaac ccgtggtcag cgcggaagaa
     7021 caggcgcaac gcgacgaaga agcacgccgt gccgccgcac ttcgcgccca ccaggaagcc
     7081 ctgttgaaag agaaacagga acgccaggca cgccgcgaag ccatgaaaca acaggcagaa
     7141 caacaggcaa aaaccgcaca ggaagccaaa accggcagac agcgtcccgc caaacctgcc
     7201 gagaaaccgc aggcagccgc gccggccgtc gaaaacaagc ctgtcaatcc ggcaaaagcg
     7261 aaaaaagaag accgccgcaa ccgcgatgac gaaggtcaag gccgcaacgc caaaggcaaa
     7321 ggcggaaaag gcgggcgcga ccgcaacaat gcacgcaacg gcgacgacga gcgcgtacgc
     7381 ggcagcaaaa aaggcaaaaa actcaaactc gagccgaacc aacacgcctt ccaagcaccg
     7441 accgaacccg tcgtacacga agttttggtg cctgaaacca ttaccgttgc cgacttggca
     7501 cacaaaatgg cagtcaaagg cgtggaagtg gtcaaagccc tgatgaagat gggcatgatg
     7561 gttaccatca accaatccat cgaccaagac accgccctga ttgtcgtcga agaactcgga
     7621 cacatcggca aacccgccgc cgccgacgat cccgaagcct tcttggacga gggcgcggaa
     7681 gcggtggaag ccgaagcatt gccgcgtccg cccgtcgtta ccgtcatggg ccacgtcgac
     7741 cacggcaaaa cctcgctgct ggactacatc cgccgtacca aagtggtaca gggcgaagca
     7801 ggcggcatta cccaacacat cggtgcatac cacgttgaaa ccccacgcgg cgtgattacc
     7861 ttcttggata ctccgggtca cgaagcgttt accgccatgc gtgcgcgcgg tgcgaaagca
     7921 accgatatcg tgattcttgt ggtcgccgcc gacgacggtg tgatgccgca aaccatcgaa
     7981 gcgattgccc acgccaaagc ggcaggcgta ccgatggtgg ttgccgtcaa caaaatcgat
     8041 aaagaagccg ccaacccaga gcgtatccgc caagagctga ccgcacacga agtcgtgcct
     8101 gacgaatggg gcggcgatgt acagtttatc gacgtttccg ctaaaaaagg cctgcacatc
     8161 gatgcattgc tcgaggcagt cttgctcgaa gccgaagttt tggaactgac cgcacctgtc
     8221 gatgcacctg ccaaaggtat catcgttgag gcgcgcttgg acaaaggccg cggcgcggtt
     8281 gccacattgc tggttcaaag cggcacgctg aaaaaaggcg atatgctgct ggccggtacg
     8341 gcattcggca aaatccgcgc gatggtcgat gaaaacggca aatccattac cgaagccggt
     8401 ccgtccatcc ccgtcgaaat cctcggcttg tccgacgtac cgaatgcggg tgaagacgcg
     8461 atggtattgg cggacgagaa aaaagcgcgc gaaatcgccc tcttccgcca aggcaaatac
     8521 cgcgacgtgc gccttgccaa acagcaggcg gcgaagctgg aaaatatgtt caacaatatg
     8581 ggcgaaaccc aggcccaatc cttgtccgtc atcatcaaag cagacgtgca gggctcttac
     8641 gaggctttgg cgggcagtct gaaaaaactg tccacagacg aagtgaaagt gaacgtgttg
     8701 cacagcggcg tgggcggcat taccgaatcg gatgtcaacc ttgccatcgc gtccggggcg
     8761 ttcattatcg gctttaacgt gcgtgcagat gcctcttcgc gcaaacttgc cgaaaatgaa
     8821 aatgtggaaa tccgctacta caacatcatc tatgatgcca tcgacgacgt gaaagccgcc
     8881 atgagcggta tgctttcccc ggaagagaaa gaacaggtta ccggtacggt cgaaatccgt
     8941 caggtcatct ccgtttccaa agtcggcaac attgcaggct gtatggttac cgatggtgtg
     9001 gtcaaacgcg attcccatgt ccgcctcatc cgcaacaacg tggtcatcca cacgggcgaa
     9061 ctggcttcgt tgaaacgcta taaagacgac gtaaaagaag tccgcatggg ctttgagtgc
     9121 ggtctgatgc tcaaaggcta caacgaaatc atggaaggcg accaactgga atgcttcgac
     9181 atcgtcgaag ttgcccgcag cctgtaattc ctttgcaaat aaaatgccgt ctgaagcgtt
     9241 cagacggcat acgaaacggg ttctgtatca tacagaaccc gttttttgtc gcaaatcggc
     9301 ttcagacagc cctcttgcct tatcccgatt tgaatctgac ttgccataca aacaggcttc
     9361 agacggc
//
LOCUS       DAXIFS010000066         9190 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.066, whole genome shotgun sequence.
ACCESSION   DAXIFS010000066 DAXIFS010000000
VERSION     DAXIFS010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9190
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.066"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            40..645
                     /locus_tag="ACFOCA_001096"
     CDS             40..645
                     /locus_tag="ACFOCA_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HFC6987827.1"
                     /translation="MNTDFQNILKQLGKQAQKEAAEKQAAEKNKQKQEQDFDFSQAVG
                     QLSPLKNRQQYYAPPDKTPIKVRPKDNRADEENYFYIGSTYNDPPASFSKNGQGKNDI
                     QRLKNGYYPVVTDVDLHGYTQEEAQKVLNEFIAFTQKRGVCGEIIHGSGLGSKGYKPV
                     LKNMTRNWLMQHPDVLAYAEPREGNDGCVRILLKRKLRQQD"
     gene            708..1070
                     /gene="ssrA"
                     /locus_tag="ACFOCA_001097"
     tmRNA           708..1070
                     /gene="ssrA"
                     /locus_tag="ACFOCA_001097"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(1387..1572)
                     /locus_tag="ACFOCA_001098"
                     /pseudo
     CDS             complement(1387..1572)
                     /locus_tag="ACFOCA_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(1588..2187)
                     /locus_tag="ACFOCA_001099"
                     /pseudo
     CDS             complement(1588..2187)
                     /locus_tag="ACFOCA_001099"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2141..2551)
                     /locus_tag="ACFOCA_001100"
     CDS             complement(2141..2551)
                     /locus_tag="ACFOCA_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HFC6987828.1"
                     /translation="MIEFVRAKKRLLWAFVLLLVWTCGYRYAADKAEAEQTALIATYR
                     HSSMVAAEQYALQLKKAQDERQRWYDFSQKQGRKPVKKQYPPQTKKAGYLKTKEELLA
                     ELACLTAEMAALKKPDALIHGKEVRQKERNSSQG"
     gene            complement(2548..2879)
                     /locus_tag="ACFOCA_001101"
                     /pseudo
     CDS             complement(2548..2879)
                     /locus_tag="ACFOCA_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2988..3491)
                     /locus_tag="ACFOCA_001102"
     CDS             complement(2988..3491)
                     /locus_tag="ACFOCA_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HFC6987829.1"
                     /translation="MSDEFNRFIERVLSHEGGYVNHPQDPGGETNWGITKRTAQANGY
                     NGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAG
                     VPDDGIIGEISLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIH
                     AAADNAD"
     gene            complement(3581..4063)
                     /locus_tag="ACFOCA_001103"
     CDS             complement(3581..4063)
                     /locus_tag="ACFOCA_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987830.1"
                     /translation="MKKYLPLLRFLLIACISAFLAWKGQPFVHGNEKAVDLIINVFAI
                     LAGFLIAIMTLFSDMRFDEDANWRQIQIREGVQEQRYIKHSLLFYTYLAVLVCVFIVI
                     LLAHKEEYKNGPAIFWLERSYLFLACISIFYSVFLPGNLIKSRKEEFKKLMEKKKPKI
                     "
     gene            complement(4060..4971)
                     /locus_tag="ACFOCA_001104"
     CDS             complement(4060..4971)
                     /locus_tag="ACFOCA_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987831.1"
                     /translation="MFDLEVALRRVLSAAPTVQDTQIEQYNQLTQIMHRTLDPKDVKG
                     NSIGGLLIHIGSGTKDEHIRTMSNRPVQQDDHGGTQAPPSGYSFLRKEAFLYIVGHHV
                     IFCGHGFLSASTVASYLSLLSNKLRENNPDIVQFNIEFKAVGNCDKLSLIQQHGVKSI
                     LLDVSAYQLSRNRLYQDSRSTIAKALGKVGSVFTSELSDEELEAQSEIHINLEVLLNG
                     NSRASIEAQSLMQEQAEEIIDDETVNQGFSITTQQGEVIQPSDVKLSKSVRIGRYDEA
                     NSLLPDSAFTAISEYFLELQSRNLTEQ"
     gene            complement(5261..5506)
                     /locus_tag="ACFOCA_001105"
     CDS             complement(5261..5506)
                     /locus_tag="ACFOCA_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987832.1"
                     /translation="MFDFEQQIKWGERAEEIVKEAATQNNIEIPEPLASALAKAVKVH
                     YLSQAGVFSLVEAYADTVNPTEKEVDYQAIGKELFEK"
     gene            complement(5535..5912)
                     /locus_tag="ACFOCA_001106"
     CDS             complement(5535..5912)
                     /locus_tag="ACFOCA_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6987833.1"
                     /translation="MISKSLFGNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVF
                     MPSGDVLLSFLNMGIDVSSLFAAEQGIRPSENSEISKEESELLGYYRQASDNGKFVIL
                     SVAKGAEKKAAENTQVSATHKTA"
     gene            6026..6205
                     /locus_tag="ACFOCA_001107"
     CDS             6026..6205
                     /locus_tag="ACFOCA_001107"
                     /inference="COORDINATES: protein motif:HMM:TIGR04111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6987834.1"
                     /translation="MYGYTVEKLKENFAQNGQTLAQWARENGFKPRDVYLVVGGQRKG
                     NYGKGHEIAKKLGLK"
     gene            6217..6507
                     /locus_tag="ACFOCA_001108"
     CDS             6217..6507
                     /locus_tag="ACFOCA_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6987835.1"
                     /translation="MAESKRVQRLLRVFIALDEHPIIGLSNKDLSVGLGLTPSQVSRD
                     IDDLVASGLVIKLENGNYAYGIKTLQIAERFRQQHERLQSKIAKIGKRVDVD"
     gene            6552..7427
                     /locus_tag="ACFOCA_001109"
     CDS             6552..7427
                     /locus_tag="ACFOCA_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3102 domain-containing protein"
                     /protein_id="HFC6987836.1"
                     /translation="MNTEIEIIATDKVSNQAAMRSVLVMEQWGNGETYSEERWVERGR
                     QAVRQTMEGMFELGRALIILKEHTEHGRFMEIVKSQFGLGIAETSRLMSATRRFATPQ
                     MQKAAPKLMDLGKSKLLELLVEEDVTLVGLAEGEEVNGMTFDDVDRMTVRELRVALRE
                     SRENLAAKDEVMKTKTAKIDELTEKLAKKQTVVREPKAEDVGSELAMQLTSLEVGIRS
                     QVSRLKDLFDQLNAHSEAHEISHQAKMVGTLNQIILDCEQLRESYALPTEAPTDNVPE
                     WLGGETGEGDESGND"
     gene            7420..7764
                     /locus_tag="ACFOCA_001110"
                     /pseudo
     CDS             7420..7764
                     /locus_tag="ACFOCA_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            7739..8374
                     /locus_tag="ACFOCA_001111"
     CDS             7739..8374
                     /locus_tag="ACFOCA_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HFC6987837.1"
                     /translation="MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVP
                     LSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTP
                     GKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYR
                     LQERRELAEWYSRRHRQAYEAAAKTPQNKKPPEKNSDGILPKTLAIKPKRY"
     gene            8444..8647
                     /locus_tag="ACFOCA_001112"
     CDS             8444..8647
                     /locus_tag="ACFOCA_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987838.1"
                     /translation="MNIIEQEMKHSSLRKVDAEIAKIIADAHKINAESVKIAQESRWY
                     PMIAATGLVTAIAAVLALIFKFA"
     gene            8684..8965
                     /locus_tag="ACFOCA_001113"
     CDS             8684..8965
                     /locus_tag="ACFOCA_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987839.1"
                     /translation="MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGEC
                     PGGHYRHSENGITLYDFIFFDGKPADEARFAAVLTETCRRAVKKICETK"
     gene            8977..9189
                     /locus_tag="ACFOCA_001114"
     CDS             8977..9189
                     /locus_tag="ACFOCA_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HFC6987840.1"
                     /translation="MELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPD
                     TETRRADMPLEKWRQFLDWIEKTNAV"
BASE COUNT         2526 a         2321 c         2117 g         2226 t
ORIGIN      
        1 ccgcccgaaa cagccatcgg acaaataaca ggaaaaaata tgaataccga cttccaaaac
       61 atcctcaaac aactgggcaa acaagcccaa aaagaagcgg cagaaaaaca ggcagccgaa
      121 aaaaacaagc aaaaacaaga acaggatttc gatttttcac aagcagtcgg acaactctcc
      181 ccattaaaaa accggcagca atattatgcg ccgcccgaca aaacccccat caaagtccgt
      241 cccaaagaca accgcgccga cgaagaaaac tacttctaca tcggcagcac atacaacgac
      301 ccgcccgcca gcttcagcaa aaacggacag ggaaaaaacg acatccaacg cctgaaaaac
      361 ggatactatc ccgtcgttac cgatgtcgac ctgcacggct acacacagga agaagcccaa
      421 aaagtcctca acgaattcat cgcattcacc caaaaacgcg gcgtatgcgg cgaaatcatc
      481 cacggcagcg gattaggttc caaaggctac aaacccgttc tgaaaaatat gacccgaaac
      541 tggctgatgc aacaccccga cgtactcgcc tacgccgaac cccgggaagg caacgacggc
      601 tgcgtccgca tcctgctcaa acgcaaatta aggcagcaag actgacaaat ttctccgaca
      661 gacttggcag caccgcacaa tatccgtata atttgcaaac catttttggg ggcgaccttg
      721 gtttcgacgg gggttgcgaa gcagatgcgg gcataccggg gtctcagatt cccgtaaaac
      781 actgaattca aatagtcgca aacgacgaaa cttacgcttt agccgcttaa ggctagccgt
      841 tgcagcagtc ggtcaatggg ctgtgtggcg aaagccaccg caacgtcatc ttacattgac
      901 tggtttccta ccgggttact tggcaggaaa taagacttaa ggtaactggt ttccaaaagg
      961 cctgttggtc ggcatgatgg aaataagatt ttcaaataga cacaactaag tatgtagaac
     1021 gctttgtaga ggactttcgg acgggggttc gattcccccc gcctccacca taccctattt
     1081 tcagcagcat cctgcaacac aaaaaagcct tgaacttcaa cagtttcaag gcttttttgt
     1141 gttgcaggat gctggcgtat gcttgagttt tcgccattta tggggtaact tttggggtaa
     1201 cttttcacga attaccccaa aaaacgcctt aaaaatgcaa aagtcatcac gcattttttt
     1261 aaaaaggtta cccaaaactt aaatgtaatc ctttatttat aagcttgcag ctttccaaac
     1321 aagttacccc caaacggata aaaaaatgcc gaagccgaac tgaccccaaa aagtcggaca
     1381 gtttaatcaa gcggctttca gggactgaat tctgtactga acaaggctca gcccttttaa
     1441 tttcaacttg attctatcgt tgttgtatag tggattaaat ttaaaccagt acggcgttgc
     1501 ctcgccttgc cgtactattt gtactgtctg cggcttcatc gccttgtcct gatttaaatt
     1561 taatccacta taaaaaaaca tctgatattg ccaaccttga tccgaatgca gtatcggctt
     1621 ttcagacgat cccggtttct ccggcgcacc tttcagtatc tcgccggcca aatcgaaagt
     1681 cgggcggatt tgaatacggt aactgacgat ttccccgtta aacaaatcca taatcggaga
     1741 aaggtatatc ttttctccgc ctacattgaa ctcggtaacg tccgttaccc atttctcatt
     1801 cggcttttct gcatggaaac agcgtcgcag gatattcggc gcaattttgc cgacttctcc
     1861 tttgaacgag cggtatttgc gccgccgtat cactgccttc agccccgtct tcgccatcag
     1921 acggctgact ttcttgtgat tgaccggtgt tcctgcgtga cggatggctg ccgcaatcct
     1981 ccggtagccg tatcttccct tatgtcgtcg ataaatatca tggatatgcc gtttcaaatc
     2041 ggcatatttg tcttctgccg attggacggc caattggtaa tagaaggtgc cgcgtggcag
     2101 tccgacaatc tccaacagca gttcaacgga tggcattgcc ttaaccctgc gacgagttgc
     2161 gttctttctg ccgcacttct ttcccatgga ttaaggcatc gggctttttt agggcagcca
     2221 tttccgctgt aaggcaagcc aattccgcaa gcagttcttc cttggttttc agatagccgg
     2281 cttttttcgt ttgcggcgga tactgttttt tcacgggctt tcttccttgt ttttgggaaa
     2341 agtcgtacca ccgctgcctt tcgtcctgcg cttttttaag ctgcaaggca tattgttccg
     2401 ccgcaaccat agaagaatgc cgataggtgg caatcagggc ggtttgttcc gcttcggcct
     2461 tgtcggcggc gtatcggtaa ccgcacgtcc acacaagcaa aagcacaaat gcccaaagca
     2521 gccgtttttt ggctcggaca aattcaatca ttgccgcccc ccttcctgat ttgcggattt
     2581 tttgacttcc gccaactgcg gtacggcggc gatgccgcgt ttgattaatg catacccgcc
     2641 gaccatcgcg ccgtatgccc accaaagcca ttcgggcgcg tccgccgcct gcacgaactt
     2701 ccaagtcatg gcggctgcgg cgacgtttgc ccaaagtttg gtatggctga ttttccctgt
     2761 ggccggatta gagaccaagc cgcccagcca tcggaaaaag gcggttattt gtgacgcttt
     2821 ttttggctgc gcgtttcgcg gcggctaccc cgctcttgcg gtgggcttgc gtccaacatc
     2881 cctgagtcgg catggcgtag cgaatgccta ggtcgctgtg gctgaaatcg ggctgcatgg
     2941 ctgcggccat cagggcgaga atggactttt ttgacatggt ttgctcctca atcggcattg
     3001 tctgcggcgg cgtgaatcag gttttgcgcc acacggcgta cccagccctt gccgaaagag
     3061 gtgaacgtac ccagcttggt ataaaagacc agacgctcgg cgttgaaccg caataaaagg
     3121 tcgttttcgg gaagggaatt gatggctttg aggctgattt cgccgatgat tccatcgtcc
     3181 ggcacgcctg cggcgcgttg gagcatacgg gcggcattgc cgtaaccgtg gttgacgcag
     3241 gcatcaaaaa attggaacgc gaccgcttcc ggcatttggt cggcgcggta acgctcccaa
     3301 aacgctttac ggtaaatgct gattgcctgt tcacgcgtca tggcacgcat ggagccgttg
     3361 tagccgtttg cctgggcggt gcgcttagtg atgccccaat tggtttcgcc gccggggtct
     3421 tgagggtggt tgacgtaacc gccctcgtgg gagaggactc gttcgataaa tcggttgaat
     3481 tcgtctgaca tggaaaaatc cctgtattga attaaaaatc aatacaggga ttttagaaaa
     3541 ggtcgtctga atgggatttt aaagggggtt aaaactcgtt ctagattttg ggtttcttct
     3601 tttccattaa ttttttaaac tcttcttttc ggcttttaat taaattccca ggtaagaata
     3661 cagaataaaa aatggaaata caggctaaaa ataaatagct ccgttcaagc caaaaaatgg
     3721 ctggtccatt tttgtattct tctttatgag ccaacaagat gacaataaaa acacaaacta
     3781 atacggcaag atatgtgtaa aaaagtaagg aatgttttat ataccgttgt tcttgtacgc
     3841 cttcacgaat ttgaatttgt cgccaatttg catcttcatc aaacctcata tcactaaaca
     3901 atgtcataat ggcaattaaa aaaccggcta agattgcaaa tacgttaata attaaatcaa
     3961 cggccttctc gttcccatga acaaaaggtt gccctttcca tgctaaaaat gctgatatac
     4021 aagcaatcaa caaaaaacgt agtaagggca gatatttttt cattgttcag ttaagtttct
     4081 gctttggagt tctaggaaat attcactgat tgctgtaaat gccgagtcag ggagtaacga
     4141 gttggcttca tcgtatcgtc ctattctaac agatttagac agttttacat cagagggctg
     4201 aatcacttca ccttgttgcg tggtaatgga aaatccttga ttaaccgttt catcatcaat
     4261 aatttcctct gcctgctcct gcatcagcga ttgcgcttca atactggctc tcgaattacc
     4321 gtttagcaag acttctaaat tgatatgaat ttcggattgt gcttccaatt cctcatcact
     4381 caattcgctt gtaaatacac taccaacttt ccctaatgct ttagcaatgg ttgaacggct
     4441 atcttgatac agtctgtttc tggataattg atatgccgaa acatctaaaa gaatactttt
     4501 taccccatgt tgttgtatca atgacaactt gtcgcaatta cctactgctt tgaattcaat
     4561 attaaattga acaatatccg gattgttctc tctcaattta ttgctaagta aacttaaata
     4621 agaagcaacc gttgatgctg acaaaaaacc atgtccgcaa aaaattacat ggtgtccaac
     4681 aatatacaaa aaagcctctt tacgcaaaaa ggaatatcca cttggaggag cttgtgttcc
     4741 accatgatca tcttgctgta caggtctatt gctcatagtg cggatatgtt catcttttgt
     4801 accgctgcca atgtgtatca gtaatccacc aattgaattg ccttttacat ctttaggatc
     4861 caaagttcta tgcatgattt gggtaagctg attgtattgt tcaatttgtg tatcttgaac
     4921 agtaggagca gctgacaaaa cccttcttaa tgctacctct aaatcgaaca agctatggtt
     4981 ttgctgcgca cgtaaataat gaatagtttt agtagttttt ttgccatttg tacagtcctt
     5041 tctcttttaa tatctgtgtc gaaaaaataa attcagacgg catcaattca aatctttcaa
     5101 cacctgaacc acctgcccga tgacctgtat gtcggggtag tttttaatgc gttttaaaat
     5161 gcacggccgc ttcaattgct taatatccgt ttcagaacac cggagcagcc cgactgtcgg
     5221 agtgtcctaa atgccgtctg aaaatttcag acggcatttt ttatttttca aatagctctt
     5281 tgccgattgc ttggtaatct acttcttttt cagttggatt taccgtgtct gcataggctt
     5341 ctaccaaaga aaacacacca gcttggctta gataatgcac ttttaccgcc ttagctaatg
     5401 ccgaagccaa aggttcggga atttcgatat tgttctgggt ggctgcctct ttaacgattt
     5461 cttccgctcg ctcaccccat ttgatttgtt gttcaaagtc aaacataaga ctgtctccat
     5521 tttggattta aaaatcacgc tgttttatgc gtggctgaaa cttgagtatt ttcggctgct
     5581 tttttctctg cgccttttgc cacactgaga atgacaaatt tgccgttatc gctggcttgg
     5641 cggtaatacc ctaataactc tgactcttcc ttactaattt cagaattttc agacggccta
     5701 attccctgtt cagcagcaaa taagctgctc acatctattc ccatattcaa aaaagagagc
     5761 aatacatctc cactaggcat aaatacgcca cgttcgtatt tgccccatgt ttcgcgctca
     5821 atacctgctt tttcagcagc ttgtgcttgg gtaagcccta aaaactttct tttttctttc
     5881 aaacgattac caaaaagaga tttagaaatc acaaaataat ccttgcaaaa gagattttaa
     5941 aatctcataa ttcacgcatt ggtaatgcac taattaattt ctagtgcata aatagttcac
     6001 tattttatca caatgggaaa gggctatcta tggctatact gttgaaaaac taaaagaaaa
     6061 ttttgcccaa aacggccaaa cgctggcgca gtgggcaaga gagaacggct ttaagccgcg
     6121 cgatgtgtat ctggtggtcg gcggacagcg caaaggcaat tacggcaagg ggcatgaaat
     6181 tgccaagaag ctgggactga aataaggagg atgcggatgg cagaaagtaa aagggtacaa
     6241 cggctattga gggtctttat cgcgcttgac gagcatccga ttatcggtct gagcaataag
     6301 gatttatcgg tcggactggg gctgacgcca tcgcaagtca gcagggatat tgatgatttg
     6361 gttgcctcgg gattggtcat caaacttgaa aacggcaact acgcctacgg catcaaaacc
     6421 ctgcaaatcg cagagcggtt caggcagcag catgaacggc tgcaaagcaa gattgccaaa
     6481 atcggcaagc gggtcgatgt ggattaacgg attttgaaag tttccgacgt cggaaacttt
     6541 ggagataaaa aatgaataca gaaattgaaa ttatcgcaac cgacaaagta agcaatcagg
     6601 cagcgatgcg cagtgtgctg gtgatggagc agtggggtaa cggcgagact tatagcgaag
     6661 agcgttgggt tgaacgcggt cgtcaagcag tacggcagac gatggaaggc atgttcgaac
     6721 tgggacgtgc gctgattatt ttaaaagagc atacggaaca cggacggttt atggaaattg
     6781 tgaaaagcca atttgggctg ggtatcgcag aaacatcacg tctgatgtca gccactcgcc
     6841 gctttgcgac cccgcaaatg cagaaagccg cgccgaagct gatggatttg ggcaagtcaa
     6901 agctgctgga actcttggtc gaagaagacg ttacgttggt gggacttgcc gaaggagaag
     6961 aagtcaacgg catgaccttt gacgatgtgg accgaatgac ggtgcgcgag ctgcgcgtcg
     7021 ccctgcgcga aagccgtgaa aacctcgccg ccaaagacga agtgatgaaa accaaaacag
     7081 ccaaaattga tgagctgacc gagaagctgg ctaagaagca aaccgttgtc agagagccga
     7141 aggcggaaga cgtgggcagt gagttggcga tgcagttaac aagccttgag gtcggtatcc
     7201 gcagtcaagt gagccgtttg aaagatttgt tcgaccaact taatgcgcac agtgaggcac
     7261 acgagatcag ccatcaggca aagatggtcg gcacgctcaa tcaaattatt ttggactgcg
     7321 agcaactgcg cgaaagctat gccctgccga ctgaagcacc gacagacaat gtgccggaat
     7381 ggttgggcgg tgaaacggga gaaggcgatg aatccggcaa tgattgagcg tcttaaggca
     7441 gtcgagaatc aggcggaagc aatgggacgc ggcgcacgct ctgcatatct taagcagcag
     7501 gcgcaggaat tgggcatcag ccttgccacg ctataccgca agctggaggc ggtcagcatc
     7561 aagccgacgc gcaaacggcg cagcgatgcg ggcaagacgg agcttaaacc ggaagaagcc
     7621 aaattgattt cggcggtttt ggtggaggcg atgaggcgca acggcaagcg gttgatgtcg
     7681 gtgcggcagg cggtggaaat gctgcgcgcc aacggaaaaa tcgaggcggc gcggattgat
     7741 ggggaaaccg gggaagtcat cccgtccgtc cgcactgctt tccgcccgct ggcaagacat
     7801 cgacctcacc gcccggttat ggcacatccc cgccgccgac atgaagacca aacacccctt
     7861 taccgtccca ctgtcggact gggcggtaga aatactccga gagctgcaca cacagaccgg
     7921 cgacaacatc caccttttcc caggcatccg cccacggcgc aaacccgccc cccatcccga
     7981 ccacatcagc atcaaattcg cccacaacgc catccgacga ctgggctatg acggcagcac
     8041 ccccggcaaa tccaaacaca caatgcacgg attccgccac ctcttcacca acatcagcct
     8101 gaccgccgga aaagacaccc tcacaacaga cctcgccctc ggccacatca gccgcgccgc
     8161 cctccaacgc gccggcttct caagcctgca ccactacctg accgccgaca gctaccgcct
     8221 ccaagagcgg cgcgaactcg ccgaatggta cagccgccgc caccgccaag catacgaagc
     8281 cgccgccaaa accccgcaaa acaaaaaacc gcctgaaaaa aattcagacg gcatcctgcc
     8341 caaaacactt gcaataaaac ctaaaaggta ttaatgtaca cacatggcag acatcctgcc
     8401 atccgacaag cagcggcaac cgccaaaaac gaaaggaaat ccaatgaaca taatcgaaca
     8461 agaaatgaaa cactccagtc tgagaaaagt agatgccgaa atcgccaaaa tcattgcaga
     8521 cgcgcacaaa atcaacgccg aatccgtaaa aatagcccaa gagtcccgct ggtatcccat
     8581 gatagcggcc accgggctgg ttaccgccat cgccgccgtg ttggcactga tattcaaatt
     8641 tgcctgacca caagccccgc gaggggcttt atccctcaac aaaatgaaca gagccgcact
     8701 attcaaccgc taccccgaat ggattatcgg gcaagacggc gcaagccgtt tcattaccca
     8761 ttgccgctat ccccgcctga ttgccaaaat ccacaggcag acagacggcg aatgcccggg
     8821 cgggcattac cgccattccg aaaacggcat caccctttac gattttattt ttttcgacgg
     8881 caaaccggca gacgaagccc gatttgccgc cgtccttacc gaaacctgcc gcagggcagt
     8941 caaaaaaata tgcgaaacaa aataaaccgc aacgacatgg aactcggcta cacgccttac
     9001 aaccttcgca cccttcgcaa ccgctgcaaa ctgacacagg ccgagttggc gcaaatcgtc
     9061 ggggtgaagc actacataca ggtaggccgc tgggaagccg aacccgatac cgaaacccgt
     9121 cgggccgata tgccgctgga aaaatggcgg cagttcctcg attggataga aaaaacaaac
     9181 gccgtctgaa
//
LOCUS       DAXIFS010000067         9048 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.067, whole genome shotgun sequence.
ACCESSION   DAXIFS010000067 DAXIFS010000000
VERSION     DAXIFS010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9048
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.067"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..105
                     /locus_tag="ACFOCA_001115"
     CDS             <1..105
                     /locus_tag="ACFOCA_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HFC6987841.1"
                     /translation="WRNGWLSSEEIRNLAKPMCKNEYGRYLLRLVGKD"
     gene            160..699
                     /gene="rfbC"
                     /locus_tag="ACFOCA_001116"
     CDS             160..699
                     /gene="rfbC"
                     /locus_tag="ACFOCA_001116"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6987842.1"
                     /translation="MNIIDTRIPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTF
                     VQENHSKSTQGVLRGLHYQTENTQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLS
                     ADNKRQLWVPEGFAHGFYVLSDEAEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE
                     PSLSAKDLAGKMLAEAATF"
     gene            861..2909
                     /locus_tag="ACFOCA_001117"
     CDS             861..2909
                     /locus_tag="ACFOCA_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFC6987843.1"
                     /translation="MIPAYIPLRSFGIRKIPNITQFLPEYSLNKTVFNAQTIIGWGLR
                     PTTHQARAFAQSHGLPFVALEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLE
                     QLILAANMPSEMLNQAQQAIDLILTHRLSKYNHALDFSDGLVQDSKNIVLVIDQTFGD
                     MAIQYGGADEATFRQMFQTALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLL
                     AEDINPISLLQAVDKVYCVTSQMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPEINRL
                     VQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELY
                     CVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAE
                     QHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMGIYFNAEAPSRLEHILQNQNFDDQ
                     DFQTALKLQKMLTENHISKYNVGNSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYH
                     NLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQY
                     ADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGT
                     LIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
                     "
     gene            3046..4305
                     /locus_tag="ACFOCA_001118"
     CDS             3046..4305
                     /locus_tag="ACFOCA_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFC6987844.1"
                     /translation="MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKT
                     VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYITQHHIQAVVCFGDTRPYHV
                     IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
                     KAPTPVHGGFTPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
                     YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
                     ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVPLPVFLRHGLGMVTI
                     NSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLN
                     VTQINGNFYSQVFFPNKKTSNSSTPVI"
     gene            4672..6078
                     /locus_tag="ACFOCA_001119"
     CDS             4672..6078
                     /locus_tag="ACFOCA_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6987845.1"
                     /translation="MTAAPDILYRQAAALLEQSNTAQALPLLQQAAEQGYTEAAFVLG
                     DHLLQNGHPEQALPWLEAAAAQRHPKALFTLLQQREHNGTPTGQLLNEYAWLSEQGHL
                     EAQLILMRYHTQRNDPQSLYWAELAAAQYAAPAYYHLARHHQRQGDVATAIEQYEKAA
                     ALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEQAAQAGHIAAQTLLADLLAAQRKPE
                     ALEWYRRAADKEQAEAQAKLAQYALTGELSERDPFQAARYAKAAAEKDHPEALKIMGD
                     LYRYGLGIKADNHIAHDYYHRAAALGSAAAAQKLISDAALYHPQQYEQIKTAALQQQQ
                     TETIYRLAETQAHAIGRPADYNAARKNYMEAAGFHHKNAAAALGRIYHYGLGTAQDPR
                     AAAHWYAIAAEQNHPSAQYHLACFYYHGQGVGCHVPTACYWLQAAIGNGHTSAESLIS
                     LLEQWRREAHHAIGQKAV"
     gene            6296..7510
                     /gene="gltS"
                     /locus_tag="ACFOCA_001120"
     CDS             6296..7510
                     /gene="gltS"
                     /locus_tag="ACFOCA_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HFC6987846.1"
                     /translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
                     VAAIILFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
                     GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
                     LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
                     AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
                     DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
                     GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
                     AILTGFVNFFKG"
     gene            7609..8625
                     /locus_tag="ACFOCA_001121"
     CDS             7609..8625
                     /locus_tag="ACFOCA_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6987847.1"
                     /translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
                     LTQEARSFAREDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
                     TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
                     GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
                     AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
                     LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
                     YSID"
     gene            8636..8833
                     /locus_tag="ACFOCA_001122"
     CDS             8636..8833
                     /locus_tag="ACFOCA_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987848.1"
                     /translation="MTTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAA
                     RLGENGFTEEQMENIANLFGR"
     gene            8851..9000
                     /locus_tag="ACFOCA_001123"
     CDS             8851..9000
                     /locus_tag="ACFOCA_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987849.1"
                     /translation="MPSETLLSVSDGILTNTVRRRKTAGFLCVSYADVPTHRTIQKAS
                     PYVPS"
BASE COUNT         2330 a         2522 c         2113 g         2083 t
ORIGIN      
        1 tggcgtaatg gctggttgag cagcgaagaa atcagaaact tggcaaagcc aatgtgtaaa
       61 aatgaatatg gccgctattt attgcgcttg gttggcaaag attaagaggt tgcttttacc
      121 agttttcagg ccgtctgaaa cgctttttag gaaaacatga tgaatatcat cgatacccgc
      181 attcccgatg tcaaattgct cgaacccaaa gtcttcggtg acgagcgtgg tttttttatg
      241 gaaaccttcc gtgatgaatg gttccgccaa aatgtagccg agcgcacttt cgtgcaggaa
      301 aaccacagca aatccaccca aggcgtatta cgcggtttac attatcaaac cgaaaataca
      361 caaggcaaac tggtgcgcgt ggtatcaggc gaagtctttg atgttgccgt ggatatgcgt
      421 cgtgatagtc ctactttcgg ccactgggtc ggtgaggttt tatcggcaga caacaaacgc
      481 caattatggg tgccggaagg gtttgcccat ggattttatg tgttgagcga tgaagcggaa
      541 ttcgtctaca aatgcaccga ctattacaac ccgaatgcgg aacattccct aatttggaat
      601 gatgccacag tgggaatcga ctggccttta ttgggagaac caagcctatc ggccaaggat
      661 ttggcaggca agatgcttgc tgaagcggcc acattttaat tttcactttt aggtcatcgt
      721 gggtaatttg tagcaagatg acctaatttt taccagctag cctactaact aaatttctac
      781 tatatttaaa tagtcagaaa atttacacaa aatctgttaa taagatatta tattgtcagt
      841 aatatttttt cctatttatt gtgattcctg cctacattcc tcttcgctct ttcggtatac
      901 gtaaaattcc gaatattacg caatttctac cggaatattc acttaacaaa accgtattca
      961 acgcccaaac catcattggc tggggcttac gcccgaccac ccaccaagca cgtgcttttg
     1021 cacaatcaca tggcttgccg tttgtagcct tggaagacgg ttttttacgc tcactgggct
     1081 taggcgtggc cggttatccg cccttcgcac tggtttacga cgatatcggc atctattacg
     1141 acacaacccg cccatcgcgt ttggagcagt tgattttagc cgcaaacatg ccgtctgaaa
     1201 tgcttaacca agcgcagcag gccattgatt tgattttgac gcaccgtttg tctaaatata
     1261 accatgctct ggatttttca gacggcctcg tacaagacag caaaaacatt gttttggtaa
     1321 ttgatcaaac tttcggcgat atggcgattc aatatggcgg cgcagatgaa gccacattcc
     1381 gccaaatgtt tcagacggcc ttagccgaaa atcctgatgc ggaaatctgg gtcaaaaccc
     1441 atcccgatgt attgagcggc aagaaacagg gttaccttac tgatttggca cagcagccgc
     1501 gtgtgcgttt attggctgaa gacattaatc cgatttcgct gctgcaagcg gtggacaaag
     1561 tgtattgcgt gacctcgcaa atgggttttg aagccttgtt gtgcggcaag cctttggtaa
     1621 cgtttggttt gccgtggtat gccggctggg gtgtaagcga cgaccgccat cctgaaatca
     1681 accgccttgt tcaaacccaa cgccgcgcca cccgcaactt gctgcagctc ttcgccgcag
     1741 cctatctgca atacagccgc tacctcaacc ccaataccgg cgaagcaggc agcctctttg
     1801 atgtcatcga ctatctggcg acggtcaaac gtaaaaacga caaattgcgt ggcgagttat
     1861 attgcgtcgg tatgtctttg tggaaacgcg cggttgccaa accgttcttt aacgtaccct
     1921 cttgccgtct gaaatttatc tcttccaccc aaaaactggc aagggtcaaa ctgtccgacg
     1981 atgcacgcat cctggcttgg ggcaacggca aagaggccat cgtccgcttt gccgaacaac
     2041 accacatccc cctgctgcgc atggaagacg gctttatccg ctcggtcgga ctcggctcca
     2101 acttagtgcc gccgctgtcg ctcgttaccg acgatatggg tatttacttc aatgccgaag
     2161 ccccatcccg ccttgaacac atcctgcaaa accaaaactt cgacgatcaa gactttcaga
     2221 cggccttgaa gttgcaaaaa atgctgaccg aaaaccatat cagcaaatac aacgtcggca
     2281 actcagactt taccgcccca tcaaccgaca aaaccgtgat cctcgttccc ggtcaggttg
     2341 aggatgatgc gtctatccgc tatggttcgc cccaaatcta tcacaatctg gatttgctcc
     2401 gtaccgtacg cgaacgaaac cccaatgcct atatcatcta caaaccgcat cccgatgtag
     2461 tcagcggtaa ccgcatcggc catatttccc ctgaagatgc tgcacgatat gccgaccaaa
     2521 ccgccgaaca agccgacatc ctgacctgtc tccaatacgc agacgaaata cataccatga
     2581 cttcgctgac cggttttgaa gccttgttgc gcggcaaaaa agtcagctgc tacggcctgc
     2641 ctttttacgc aggctggggg cttacccaag atctgctccc catcccgcgc cgtagccgca
     2701 gacttgagct ttggcagctg attgccggca cgctcatcca ctatcccgac tacatccacc
     2761 ccgaaaccca tcaggccata aatgcggaaa ccgcagccca aatcctgata cgacaaaaaa
     2821 atatgcaaaa aaacaacaac ggattacatc gcgggtgctt tgccaaaaaa ttaggtaaaa
     2881 tcaaacaact atatcgatct ttcaaataaa taccatcaaa gttaacgatg cgtcataaac
     2941 ttgcctctat tgcggcatca ttgcctttgc atcgttaatt ctcttggcgt atgcttgaaa
     3001 gttcaaccta aaactattac ataaaaaaca aaaccacatt gcaacatgaa acagaccgtc
     3061 ctcaaaaata acctgcaaaa cctgcttgaa agcgcagaaa atatcctgct gcttcaaggc
     3121 cctgtcggcg atttttttct gcgccttgcc gactggctga ctgcaaacgg caaaaccgta
     3181 cataaattca actttaatgc aggcgacgac tatttttatc cgcccactca agcgcatacc
     3241 gttgttttta acgacaacta cgatgccttt cctgagtttt tgcaagaata catcactcaa
     3301 catcacatcc aggccgttgt ctgctttggc gacacacgcc cttatcacgt cattgcaaaa
     3361 cgcattgcaa acgaaaacca agccagtttc tgggcgtttg aagaaggcta tttccgcccc
     3421 tactacatca ccttagaaaa agacggcgtc aacgcatttt ccccgttgcc gcgccgtgcc
     3481 gacttttttc ttgaacaatt ccctaagctt gcccagcaag aatataaagc gccaacgccg
     3541 gtacacggcg gttttacgcc catggcaaaa aacgctatcc gttactatat cgagttgttc
     3601 cgcaatccac gcaaataccc cgactacatc caccaccgcg cacccaatgc cggccattac
     3661 ctcaaaccgt ggtcgctctc catcctcaag cgtttgaact actatattga agacatccaa
     3721 atcgccaaac gtgtggaagc aggcaaatac ggcaagtttt ttattgttcc cttacaggta
     3781 ttcaacgaca gccaagtccg tatccattgc gactttccca gcgtccgcag cttcctgctc
     3841 catgttttga gttcatttgc cgagcacgcg cctgccgata ccaacatcat catcaagcat
     3901 catccgatgg accgcggttt tatcgactac tggcgcgaca ttaaacgctt tatcaaagaa
     3961 caccccgaac tcaaaggccg cgtgatttat gtccatgatg tccccctgcc cgttttcctg
     4021 cgccacggtc tcggcatggt caccatcaac agcaccagcg gcctgtccgg actgattcac
     4081 aatatgccag ttaaggttct cggccgtgcc tattatgata ttcccggcat tactgaccaa
     4141 aataccttgg cagaattttg gaatcatccg acaccgcctg acaaagagct gttccatgcc
     4201 taccgaatgt accacctcaa cgtgacccaa attaacggca acttctacag tcaggtgttt
     4261 ttccccaaca aaaaaacctc caactcttcc acaccagtaa tctgacttag cgaaggaagt
     4321 tcaggccgtc tgaaaacatt tcagacggcc tgaaacaatc aataccttag ctactgccat
     4381 gtaaataaaa cacaaaaatc tgcatttatc attaacaata aattacaaaa acagtataat
     4441 gaccgagctg ccatgagcgc ataccgactc aacctgagcc ctttataaca cacaaaatat
     4501 ggatgtatcc ccaggcaaaa caatataaca agccaaacat cctaaagata agccggcaag
     4561 gaaatacact ctgcaaaacg atgccgagca atatttttac aaagccctca accggtatcg
     4621 ccgcccatat gccgcagcat ccgtcttcca ctttatatcc gcccgcaaac catgaccgcc
     4681 gctcctgata tcctataccg tcaagccgcc gcccttttgg aacaatccaa taccgcccaa
     4741 gccctgcccc tgctgcaaca ggccgcagag cagggatata cggaagctgc ttttgtattg
     4801 ggcgaccatc tgctgcaaaa cggtcatccg gagcaggcac ttccatggtt ggaagccgcc
     4861 gcggcccaac gccatcccaa ggcactcttt accctgctgc aacaacgcga acacaacggc
     4921 accccgaccg gacagcttct taacgaatac gcctggctga gtgagcaagg tcacctcgaa
     4981 gcccaattaa ttctcatgcg ttaccacacg cagcgcaacg atccacaatc gctctactgg
     5041 gcggagcttg ccgctgccca atatgccgca cctgcgtatt accatttggc acgccatcat
     5101 caacgccaag gcgacgttgc aacagctatc gaacaatacg aaaaagcggc agcgctcggc
     5161 gtgactgcag cctgctggca actcggtcaa atctacttct acggcacagg tgtcagcccc
     5221 aaccacgcac aagccgaaca ctatctcgaa caagccgcgc aagccggcca catcgccgca
     5281 caaaccctgc tggccgacct tcttgctgcc caacgcaaac ccgaagcctt agaatggtat
     5341 cgtcgtgccg ccgacaaaga gcaagcggaa gcacaggcca agctggctca atacgccctg
     5401 accggcgaac tttccgaacg cgatccgttt caagcggcac gatatgccaa agccgccgct
     5461 gagaaagacc atcccgaagc cctgaaaatc atgggcgacc tctaccgcta cggcctcggc
     5521 atcaaagctg acaaccatat cgcgcacgat tactaccacc gtgctgccgc gctgggttct
     5581 gccgccgcag cacaaaaact catcagcgac gccgcgctgt accatccgca acaatacgaa
     5641 caaatcaaaa ctgccgccct gcaacagcaa caaaccgaaa ccatctaccg tttggcggaa
     5701 acacaagccc atgccatcgg tcgtcccgcc gactataatg ccgcacgcaa aaattacatg
     5761 gaagctgccg ggttccacca taaaaacgcg gcggctgcct taggccgcat ctaccattac
     5821 ggcctcggta cggcgcaaga tcctcgggcg gctgcacact ggtacgccat tgctgccgaa
     5881 caaaaccacc cttccgccca ataccacctc gcctgttttt actatcacgg gcaaggtgtc
     5941 ggctgtcatg ttccgaccgc ctgctactgg ctgcaggccg ccatcggcaa cggccacact
     6001 tcggccgaat cattaatatc cctattagaa caatggcgac gcgaagcaca ccatgccatc
     6061 ggacaaaagg ccgtctgaaa agatttacac tcgcattttt tgacaatctt taactattcc
     6121 cctaatattt gccagttatt tttcacggac acgccattgt tttcatttct ttctgaaaac
     6181 accttgtccg cgcatcaata ccatgacact cggcggataa cgccaagcgt tgaaacacac
     6241 tacatccgga acaaaaacgg atgctcggaa aaatatttct aggaggtgaa acaacatgga
     6301 atgggaattc aacagttatt acacactgat tgccgccacg ctcgtgttgc tggttggtaa
     6361 atttctggtt caaaaaatca aattcttacg agacttcaat attcccgagc cggtcgctgg
     6421 cggtttggtt gccgcgatta tcctgtttgc gctgcacgag gcgtacggcg tgagcttcaa
     6481 atttgagaaa ccgctgcaaa atgcgtttat gctgattttt ttcacgtcca tcggcttgag
     6541 cgcggatttt tcccgtttga aggcgggcgg tttgccgctg gtggttttta ccgcgattgt
     6601 gggcggattt atcttggtgc aaaactttgt cggggtcgga ctggctacgg ctttgggttt
     6661 ggacccgctc atcggtctga ttaccggttc ggtgtcgctg acgggcggac acggtacgtc
     6721 aggtgcgtgg ggacctaatt ttgaaacgca atatggcttg gtcggcgcaa ccggtttggg
     6781 tattgcatcg gctactttcg ggctggtgtt cggcggcctg atcggcgggc cggttgcgcg
     6841 ccgcctgatc aacaaaatgg gccgcaaacc ggttgaaaac aaaaaacagg atcaggacga
     6901 caacgcggac gacgtgttcg agcaggcaaa acgcacccgc ctgattacgg cggaatctgc
     6961 cgttgaaacg cttgccatgt ttgccgcgtg tttggcgttt gccgagatta tggacggctt
     7021 cgacaaagaa tacctgttcg acctgcccaa attcgtgtgg tgtctgtttg gcggcgtggt
     7081 catccgcaac atcctcactg ccgcattcaa ggtcaatatg ttcgaccgcg ccatcgatgt
     7141 gttcggcaat gcttcgcttt cgcttttctt ggcaatggcg ttgctgaatt tgaaactgtg
     7201 ggagctgacc ggtttggcgg ggcctgtaac cgtgattctt gccgtacaaa ccgtggtgat
     7261 ggttttgtac gcgacttttg ttacctatgt ctttatgggg cgcgattatg atgcggcagt
     7321 attggctgcc ggccattgcg gtttcggctt gggtgcaacg ccgacggcgg tggcaaatat
     7381 gcagtccgtc acgcatactt tcggcgcgtc gcataaggcg tttttgattg tgcctatggt
     7441 cggcgcgttc ttcgtcgatt tgattaatgc cgcgattctc accggttttg tgaatttctt
     7501 taaaggctga ttttccgcct ttccgccaaa gcacctgcaa ggtttaccgc ctgcaggtgc
     7561 ttttgctatg atagccgcta tcggtctgca ccgtttggaa ggaacatcat gtatcggaaa
     7621 ctcattgcgc tgccgtttgc cctgctgctt gccgcttgcg gcagggaaga accgcccaag
     7681 gcattggaat gcgccaaccc cgccgtgttg caaggcatac gcggcaatat tcaggaaacg
     7741 ctcacgcagg aagcgcgttc tttcgcgcgc gaagacggca ggcagtttgt cgatgccgac
     7801 aaaattatcg ccgccgccta cggtttggcg ttttctttgg aacacgcttc ggaaacgcag
     7861 gaaggcgggc gcacgttctg tatcgccgat ttgaacatta ccgtgccgtc tgaaacgctt
     7921 gccgatgcca aggcaaacag ccccctgctg tacggggaaa ccgctttgtc ggatattgtg
     7981 cggcagaaga cgggcggcaa tgtcgagttt aaagacggcg tattgacggc agccgtccgc
     8041 ttcctgcccg tcaaagacgg tcagacggca tttgtcgaca acacggtcgg tatggcggcg
     8101 caaacgctgt ctgccgcgct gctgccttac ggcgtgaaga gcatcgtgat gatagacggc
     8161 aaggcggtga aaaaagaaga cgcggtcagg attttgagcg gaaaagcccg tgaagaagaa
     8221 ccgtccaaac ccacgcccga agacattttg gaacacaatg ccgccggcgg cgatgcgggc
     8281 gtaccccaag ccgcagaagg cgcgcccgaa ccggaaatcc tgcatcctga cgacggcgag
     8341 cgtgccgata ccgttaccgt atcacggggc gaagtggaag aggcgcgcgt acaaaaccag
     8401 cgtgcggaat ccgaaattac caaactttgg ggaggactcg ataccgacgt gcaaaaagag
     8461 ttggtcggcg aacaacgcaa gtgggcgcag gaaaaaatca gcaactgccg acaagccgcc
     8521 gcgcaggcag accggcagga atacgccgaa tacctcaagc tgcaatgcga cacgcggatg
     8581 acgcgcgaac ggatacagta tcttcgcggc tattccatcg attaggggca aaccgatgac
     8641 taccgtcccc aaaagcagga ttcccgtcaa accgctgccc gaaaaaacca cagacgaagc
     8701 caaagtcgaa aaatggcggc agctcggtgc ggaacacggt ttgtcgggcg aatgggcagt
     8761 tgccgccaga ttgggcgaga acggttttac cgaagaacag atggaaaata tcgccaacct
     8821 gttcggcaga taaagggaaa attgacggaa atgccgtctg aaaccctgtt atcggtttca
     8881 gacggcattt tgactaatac ggtacgcagg cgcaaaacag ccggcttttt atgtgtttcc
     8941 tatgctgatg ttccaacaca caggacgata caaaaagcgt cgccctatgt gccgtcctga
     9001 ttcggaaagg gttacgctcc tcccaaatat agtggattaa caaaaacc
//
LOCUS       DAXIFS010000068         9010 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.068, whole genome shotgun sequence.
ACCESSION   DAXIFS010000068 DAXIFS010000000
VERSION     DAXIFS010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9010
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.068"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            302..775
                     /locus_tag="ACFOCA_001124"
     CDS             302..775
                     /locus_tag="ACFOCA_001124"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6987850.1"
                     /translation="MTMQVFLTIPGYDVEAEIEKFVWMDAVIWQMPSWWMHEPWTVKK
                     YIDEVLTAGHGKLYQSDGRHSVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTRESDF
                     FEGKGVDVLYMHFHKANEFLGMTRLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            complement(984..2369)
                     /gene="pntB"
                     /locus_tag="ACFOCA_001125"
     CDS             complement(984..2369)
                     /gene="pntB"
                     /locus_tag="ACFOCA_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008750 - proton-translocating NAD(P)+
                     transhydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HFC6987851.1"
                     /translation="MSSGLVTAAYIVAAILFIFSLAGLSKQETAKQGCYSGIAGMAVA
                     LFVTVFSDNTHGLGWIIIAMLIGAAIGIYKAKKVEMTEMPELIALLHSFVGLAAVLVG
                     FNSYIEPGNVSHDMHTIHLVEVYLGIFIGAVTFTGSLVAFGKLNGKISSSPLQLPAKH
                     KLNALALAVSFVLLLVFVGIDGSGFILLIMTLIALAFGWHLVASIGGADMPVVVSMLN
                     SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFVSVIAGGFGSDSG
                     TSSSGSQEIGEYREVKAADVAEMLKGANSVIITPGYGMAVAQAQYPVAEITELLRKNG
                     TEVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVN
                     PAAQTDPNSPIAGMPVLEVWKAKEVVVFKRSMNTGYAGVQNPLFFNENSVMCFGDAKK
                     TVDDILSELKK"
     gene            complement(2435..2818)
                     /locus_tag="ACFOCA_001126"
     CDS             complement(2435..2818)
                     /locus_tag="ACFOCA_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HFC6987852.1"
                     /translation="MTFAYWCILIACLLPLFCAAYAKKAGGFRFKDNHNPRDFLAHTQ
                     GTAARAHAAQQNGFEAFAPFAAAVLTAHAIGNAGQATVNTLAGLFILFRLAFIWCYIA
                     DKAALRSLMWAGGFACTVGLFVAAA"
     gene            complement(2822..4363)
                     /locus_tag="ACFOCA_001127"
     CDS             complement(2822..4363)
                     /locus_tag="ACFOCA_001127"
                     /EC_number="7.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HFC6987853.1"
                     /translation="MKIGIPRESLSGETRVACTPATVALLGKLGFETVVESGAGLAAS
                     LDDAAYQAAGATVADKAAVWACPLLYKVNAPSEGELPLLKEGQTIVSFLWPRQNEALV
                     EALRAKKVNALAMDMVPRISRAQALDALSSMANISGYRAVIEAANAFGRFFTGQITAA
                     SKVPPAQVLVIGAGVAGLAAIGTANSLGAVVRAFDTRLEVAEQIESMGGKFLKLDFPQ
                     ESGGSGDGYAKVMSDEFIAAEMKLFAEQAKEVDIIITTAAIPGKPAPKLITKEMVESM
                     KSGSVIVDLAAATGGNCELTRPGELSVTGNGVKIIGYTDMANRLAGQSSQLYATNLVN
                     LTKLLSPNKDGEITLDFEDVIIRNMTVTRDGEITFPPPPIQVSAQPQQTPSEKAAPAA
                     KPEPKPVPLWKKLAPAVIAAVLVLWVGAVAPAAFLNHFIVFVLACVIGYYVVWNVSHS
                     LHTPLMSVTNAISGIIVVGALLQISQGNGFVTLLAFIAILIASINIFGGFAVTRRMLN
                     MFKKG"
     gene            4653..5486
                     /gene="serB"
                     /locus_tag="ACFOCA_001128"
     CDS             4653..5486
                     /gene="serB"
                     /locus_tag="ACFOCA_001128"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFC6987854.1"
                     /translation="MPHALVLQFPSAEALPSDFPSRLPEPDCADEKRMRFIVEEGFSL
                     SGADAALLGSRQIDHVVLPDMDFGELGLIVSDMDSTLITIECVDEIAAGVGLKDKVAE
                     ITERSMRGELDFEQSLRSRVALLAGLDEQILADVYENVLKLSPGAEFLLDECKRHDVK
                     FLLVSGGFTFFTERLQQRLGFEYQHANVLEIENGRLTGRLKGRIIDAQAKADLLSEYR
                     SRLGLQPHQVLAMGDGANDIPMLKEAGIGVAYRAKPKARAAADACINFGGLERVRGLF
                     G"
     gene            5550..6772
                     /locus_tag="ACFOCA_001129"
                     /pseudo
     CDS             5550..6772
                     /locus_tag="ACFOCA_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
     gene            6937..8517
                     /gene="purH"
                     /locus_tag="ACFOCA_001130"
     CDS             6937..8517
                     /gene="purH"
                     /locus_tag="ACFOCA_001130"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFC6987855.1"
                     /translation="MPSIKRALISLSDKTGAVEFAQTLTKLGVEILSTGGTAKLLADA
                     GVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLDEHVAKMEEHGIGNIDLVCV
                     NLYPFAATIAKPNCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAELE
                     ANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDDVLSGEPEIGEFPSQFNQSW
                     IKVQDMRYGENPHQRAAFYRDIDPAAGSLSAYKQLQGKELSYNNIADADAAWEAVKSF
                     DAPACVIVKHANPCGVAVAADTLTAYKLAYVTDTTSAFGGIIAFNREVDGETVKQITD
                     NQFMEVLMAPKFTAEALEIAAAKKNVRVLEVPLEAGANRFELKRVGGGLLVQTPDIHR
                     LNRADLKVVSKRQPTEQEWNDLMFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDS
                     TRIAARKAQDANLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDA
                     ADEHGIAMVVTDVRHFRH"
BASE COUNT         2042 a         2441 c         2532 g         1995 t
ORIGIN      
        1 actcattagt tacctaaaac ttaaaaagca gaaaccttta cgccgtcatt cccacgaaag
       61 tgggaatccg ggaacttaac gttacagtga tttatcggaa acggctgaaa ccgaatgaat
      121 tggattcccg cctgcgcggg aatgacgaat ccatccgtac ggaaacctgc accacgtcat
      181 tcccactaac ctacattccg tcattcccac gaaagtggga atccaggacg aaaaatctcc
      241 agaaaccgtt ttacccgata agtttccgca ccgacaggtc tggattcccg cctgcgcggg
      301 aatgacgatg caggtatttc tgacgattcc cggctatgat gttgaggcag aaatcgaaaa
      361 attcgtttgg atggatgctg tgatttggca gatgccgagc tggtggatgc acgagccttg
      421 gacagtgaaa aaatacatag acgaagtatt aaccgctgga cacggcaaac tctaccaaag
      481 cgacggcaga cacagcgtca atccgactga gggctacggc acaggcggct tgttgcaagg
      541 caaaaaacat atgctttcac tgacttggaa tgcgccgatt gaggcgttta cccgcgaaag
      601 cgatttcttt gaaggcaaag gcgttgatgt tttgtatatg cacttccaca aagccaacga
      661 gtttttgggt atgacccgcc tgccgacatt cttatgtaac gatgtggtta aaaatccgca
      721 agtggaaaaa tacttggcag attatcaggc acacttggaa aaagtgttcg gctaattaaa
      781 aatccatctt caacacggag atggattttg tttgtttcgt tgattttgtg tcagtttcag
      841 atgtaggtgc ttattcggac gggccgtctg aaaatgtttg ccccaatgca aaaaaaatca
      901 ctgcaaacct tcataaacgg ggtttgcagt gattttttca aatcaaacag attgaaaacc
      961 tgcgccgaat tgttcagacg gcattatttt ttcagttcgg acagaatgtc atccacggtt
     1021 ttcttcgcat ctccgaaaca cattacgctg ttttcgttga agaacagcgg gttttgtaca
     1081 cctgcgtagc cggtattcat cgagcgtttg aagacgacga cttcttttgc cttccatact
     1141 tccaacacgg gcatacccgc aatcgggctg ttcgggtcgg tttgggcggc aggattgacg
     1201 gtatcgttcg caccaatcac caagaccaca tcggtttcgg ggaagtcgtc gttgatttcg
     1261 tccatttcca acacgatgtc gtaggggact ttggcttcgg caagcagtac gttcatatga
     1321 ccgggcaggc ggccggcgac ggggtggatg ccgaagcgca cttctgtgcc gtttttacgc
     1381 aaaagctcgg tgatttcggc aacggggtat tgcgcttgtg cgactgccat accgtagccc
     1441 ggggtaatga tgacactgtt tgcgcctttc agcatttcgg caacatcggc agctttgact
     1501 tctcggtatt cccctatctc ttggctgccg gaagatgatg tgccgctgtc gctgccgaaa
     1561 ccgccggcga ttaccgagac aaacgaccgg ttcatggctt tgcacataat gtaggacaga
     1621 atcgcgccgc ttgagccgac caacgcgccg gtaacgatga gcaggtcgtt ggagagcata
     1681 aagcctgccg ctgcggccgc ccagccggag taggagttga gcatggacac gaccacgggc
     1741 atatctgcgc cgccgatgga ggcgaccaag tgccagccga atgcgagggc gatcagagtc
     1801 attatcagca ggatgaagcc gctgccgtca atgccgacaa atacgagcag caacacaaac
     1861 gatacggcaa gtgccagtgc gttgagcttg tgtttggcag gcagttgcag cgggctgctg
     1921 ctgattttgc cgttgagttt gccgaatgcg accagcgagc cggtaaaggt taccgcgccg
     1981 atgaaaatgc ccaaatagac ttcgaccaga tggatggtgt gcatatcgtg cgaaacgttg
     2041 cccggctcga tatagctgtt gaagccgacc aaaaccgccg ctaggccgac gaagctgtgc
     2101 agcagggcaa tcagttcggg catttcggtc atttccacct ttttggcttt gtagatgccg
     2161 attgccgcgc cgatgagcat ggcgatgatg atccagccca gtccgtgggt attgtcggaa
     2221 aaaacagtta caaaaagggc gaccgccata ccggcgatac cggaatagca gccctgtttg
     2281 gcggtttcct gtttggacag ccccgccagt gagaagatga ataaaattgc ggcaacgata
     2341 tacgccgctg ttacgagtcc tgaagacatg gaaattctcc gattttcgat gatttgtttt
     2401 taatgccgtc tgaactgttc agacggcatc tgtttcaagc agccgcgaca aacagcccga
     2461 cggtgcaggc aaatccgccc gcccacatca gcgagcgcaa tgctgctttg tctgcgatgt
     2521 agcaccagat aaaggcgagg cggaacagga tgaacaggcc ggcaagcgtg ttgacggttg
     2581 cttgtccggc attgccgatt gcgtgtgccg tcaaaacggc ggcggcaaac ggtgcaaagg
     2641 cttcaaaacc gttttgctgc gcggcgtggg cacgggcggc tgtgccttgc gtgtgcgcca
     2701 gaaaatcgcg cggattgtgg ttgtctttaa accggaatcc gcccgctttt ttggcatatg
     2761 ccgcacaaaa aagcggcaat aggcaggcaa tcaggatgca ccaataggcg aaagtcatgg
     2821 cttacccttt cttaaacata ttcagcatac gccgtgtaac cgcaaagccg ccgaagatgt
     2881 tgatgctggc aatcaggatg gcgatgaagg caagcagggt cacgaaaccg ttgccttggc
     2941 tgatttgcag cagcgcgccg acgacgatga tgccggagat ggcgttggtt accgacatca
     3001 gcggtgtgtg cagcgagtgg ctgacattcc aaacgacgta gtagccgatg acgcaggcga
     3061 ggacgaacac gataaagtgg ttcaagaatg ctgcgggtgc gaccgcgccg acccacagca
     3121 ccaatacggc ggcgatgacg gcaggcgcga gttttttcca caggggaacg ggtttcggct
     3181 cgggcttggc ggcaggcgcg gctttttcag acggcgtttg ctgcggctgt gcggaaactt
     3241 gaatcggcgg aggcgggaag gtgatttcgc cgtcgcgggt aacggtcata ttgcggataa
     3301 tcacgtcttc aaaatccagc gtgatttcgc cgtctttgtt cgggcttaac aacttggtca
     3361 ggttgaccag gttggtggcg taaagctggg aagactgtcc ggcaaggcgg tttgccatgt
     3421 cggtgtagcc gatgattttc acgccgttgc cggttacgga caattcgccc gggcgggtga
     3481 gttcgcagtt gccgcccgtc gccgccgcca aatcgacgat gacggagccg gatttcatgc
     3541 tttccaccat ttctttggta atcagcttgg gcgcgggttt gcccggaatg gcggcggtgg
     3601 tgatgatgat gtccacttct ttcgcctgct cggcaaagag cttcatctcg gctgcgataa
     3661 attcgtcgct catcactttg gcgtagccgt ctccgctgcc gcccgattct tgtgggaagt
     3721 cgagtttcag gaacttgccg cccatcgatt cgatttgttc cgccacttcc aagcgggtat
     3781 cgaacgcgcg taccactgcg ccgagcgagt ttgccgtacc gatcgccgcc aaacctgcca
     3841 cacctgcacc aatcaccaaa acctgcgcgg gcggcacttt gctggcggcg gtaatttgac
     3901 cggtgaagaa acggccgaag gcgttggcgg cttcaattac ggcgcggtag ccgctgatgt
     3961 ttgccatcga agacaaagcg tccaaagcct gcgcgcgcga aatgcggggc accatatcca
     4021 tcgccagcgc gttcactttc ttggcgcgca aggcttcgac caaagcctcg ttttggcgcg
     4081 gccacaggaa gctgacgatg gtctgccctt ctttgagcag cggcagctcg ccttcggacg
     4141 gcgcgttgac tttgtaaagc aaagggcatg cccaaaccgc cgctttgtcg gcaacggtcg
     4201 cgcctgctgc ttggtaagcg gcatcgtcca aacttgccgc caaacctgca ccgctttcga
     4261 caacggtttc aaagcccagt ttgcccagca gggcgacggt ggcgggcgta caggcgacgc
     4321 gggtttcgcc ggataatgac tcgcgtggga taccgatttt catctctgaa tcctttttcg
     4381 ggtagtttat atgtatcgtg ggttaaattt aaatcggggc agggcggagc aacgccgtac
     4441 cggtttaaaa ccgattcact tcaaatgtta atatatttta gataatcccc ttataacgaa
     4501 ttttcatcag gctggcaata gttgcggcat tttcccgtgt tgtccgacac atactgccgt
     4561 ttgcgtttga agtcattttc cgattgcagt ccctcccgcc gtaacattct ttgccgtttc
     4621 actatataat ccgcattttt tgagccgtcg ttatgccgca cgccctcgtc ctccaatttc
     4681 cctccgccga agccctgcct tccgacttcc cctcccgcct gcccgaacct gattgcgccg
     4741 atgaaaagcg tatgcgtttt atcgttgaag aagggttttc tttaagcggg gcggacgcgg
     4801 cgttgcttgg cagccgtcaa atcgaccacg tcgtgttgcc ggatatggat tttggcgaac
     4861 tcggtttgat tgtcagcgat atggattcga cgctgattac catcgaatgc gtcgatgaaa
     4921 ttgcggcagg cgtgggttta aaagacaagg tagcggaaat taccgagcgt tcgatgcgcg
     4981 gagagttgga tttcgagcag tcgttgcgca gccgcgttgc gctgttggcg ggattggacg
     5041 aacagatttt ggcggacgtt tatgaaaacg ttttgaagct ctcgcccggt gcggaatttt
     5101 tgttggacga atgcaaaagg cacgatgtga aattcctgct ggtgtccggc ggcttcacgt
     5161 tttttaccga acgtctgcaa caacgcctcg gcttcgaata ccaacacgcc aatgttttgg
     5221 aaattgaaaa cggcaggttg accggccgtc tgaaaggcag aatcatcgac gcgcaggcaa
     5281 aggcggattt attgagcgaa taccgcagcc gcctcggatt gcagccacat caggtgttgg
     5341 cgatgggcga cggtgcgaac gatattccga tgctcaaaga agcgggcata ggcgtggctt
     5401 accgtgccaa accgaaagcg cgggccgccg ccgatgcctg tatcaatttc ggcggtttgg
     5461 agcgtgtacg cggcctgttc ggataggcgg ataggaaacg gatgtcgtcc gaaaggtttt
     5521 cagacggcat ttgaacggca ggaacgacag tgggacgcag aaaactttgg tttgccctgg
     5581 cagcagcagg cgttatcggc ggtttggtcg gcattgtgct gacggaactg atgcacttca
     5641 tacagcatac ggcaacggtt atggcgcgga cggcgtgtac acttcgttcc gcgaaggcgt
     5701 ggcacaggct tccggtatgc ggcgcgttgc cgtgctgacg ctgtgcggcg cggtcgcagg
     5761 cagcggctgg tggttgctga aacgtttcgg caagccgcaa atcgaaatca aagccgcctt
     5821 gaaacagccg ttgcaggggc tgccgtttct gacgacggtt ttccatgttc tgctgcaaat
     5881 cataacggtc ggactcggtt cgccgctcgg acgcgaagtc gcgccgcgag aaatgaccgc
     5941 cgcgtttgct tcggcaggcg gcaaacgctt gggtttggac gaaggcgaaa tgcgcctctt
     6001 gattgcctgt gcgtccggcg cgggtttggc ggcggtgtat aacgtgccgc tcgcctccac
     6061 gctgtttatc ctcgaagcga tgttgggcgt gtggacgcag caggccgccg ccgccgcgtt
     6121 gctgacttcg gtcattgcca ccgccgtcgc gcgcatcggc ttaggcgacg tgcagcaata
     6181 tcatcccgcc aaccttgccg taaacacctc attactttgg ttttccgccg tcatcggccc
     6241 gatactgggc gcaacggcgg tatatttccg gcgcagtgcc gaaaagttcc ccttcctcaa
     6301 gcgcgacaat ccgagaatta ttcctttggc gattgctttg tttgcactca tcggcgcgat
     6361 tgccgtttgg tttcccgaaa ttttgggcaa cggcaaagca ggcaaccaac tgacctttgg
     6421 cggattgacc gactggcaac acagccttga gctgaccgcc gtcaaatggc tggttgtctt
     6481 gatggcgttg gcggcaggcg catacggcgg actgattacg ccgtctatga tgctcggcag
     6541 caccatttct tttgcagccg ccgccgcgtg gaacagcgtt ttccccgaaa tgccgtctga
     6601 aagcgcggca gtcgtcggcg ccgccgtttt cctcggcgtt tccctcaata tgccgctgac
     6661 cgccgccgtc tttattttgg aactcaccta cgcccccgcc gctttgttga tgcctttatg
     6721 tacgggtatg gcgggcgcgg tatggacggc aaggaaaatg ggatgtaaat aaccgaaagg
     6781 caaaatgccg tctgaaaccg gttttcagac ggcattcctt tggggattgt caacaatatc
     6841 tgcaaaaacc tactgccgga aagtggaaaa tagcggataa taccgccccg acaacattac
     6901 cgtttcccat cccaacgtca gaaaaaggaa atccctatgc cttccatcaa acgcgccctg
     6961 atcagcctgt ccgacaagac gggcgcagtc gaatttgccc aaaccctgac caagctcggt
     7021 gtcgaaatcc tctctaccgg cggcacggcg aagctgcttg ccgatgcggg cgttcccgtg
     7081 attgaagttg ccgactacac cggtttcccc gaaatgctcg acggccgcgt gaaaaccctg
     7141 catccgaaaa tccacggcgg tattttgggc cggcgcgatt tggacgaaca cgtcgccaag
     7201 atggaagaac acggcatcgg caacatcgac ctcgtgtgtg tcaacctcta ccccttcgcc
     7261 gccaccatcg ccaaaccaaa ctgcacgctg gaagacgcga ttgaaaacat cgacatcggc
     7321 ggcccgacca tggtgcgctc cgccgcgaaa aactggaaac acgtcgccat cgttaccgac
     7381 acagccgatt tcccggccat cgccgccgaa ctcgaagcca acaatggcgc attgagcgac
     7441 aaaacccgct tcaacctgtc gcgcaaggcg ttcagccaca ccgcccaata cgacggcatg
     7501 atttccaact acctgacctc actttcagac gacgttttga gcggagagcc tgaaatcggc
     7561 gaatttccaa gccagttcaa ccaaagctgg attaaagtgc aagacatgcg ctatggcgaa
     7621 aacccgcatc agcgcgccgc gttctaccgc gatattgacc ccgccgcagg cagcctttcc
     7681 gcctacaaac aactgcaagg caaagaattg tcttacaaca acatcgccga tgccgatgcc
     7741 gcatgggaag ccgtcaaatc ctttgacgcg ccagcctgcg tgatcgtcaa acacgccaat
     7801 ccgtgcggcg tcgccgttgc agccgataca ttgaccgcct acaaactcgc ctacgtcacc
     7861 gacaccacca gcgcgttcgg cggcatcatc gccttcaacc gcgaagtgga cggcgaaacc
     7921 gtcaaacaga ttaccgacaa ccagtttatg gaagtcttga tggcgccgaa gtttaccgcc
     7981 gaagccctcg aaatcgccgc cgccaagaaa aacgtgcgcg tattggaagt gccgcttgag
     8041 gcaggcgcaa accgcttcga actcaaacgc gtcggcggcg gactgttggt acaaacccct
     8101 gatattcacc gcctcaaccg cgccgatttg aaagtcgtct ccaaacgcca accaaccgag
     8161 caagaatgga acgacctgat gtttgtttgg aacgtcgcaa aatacgtcaa atccaacgcc
     8221 atcgtcttcg gcaaaggcgg tcaaacctac ggcatcggcg caggccaaat gagccgcgtg
     8281 gacagcaccc gcatcgccgc ccgcaaagcg caagatgcca atctcgacct caacggcgca
     8341 tgtgccgctt ccgatgcttt cttccccttc cgcgacggcg tggacgtgat tgccgagcag
     8401 ggcatcaaag ccatcatcca tccggcaggt tcgatgcgcg atcaggaagt cttcgacgca
     8461 gcggacgaac acggcatcgc catggtcgta accgacgtgc gccacttccg ccattaacgc
     8521 agatgaacaa ggcaatgccg tctgaagggc tttcagacgg cattttgcgc tattttgtga
     8581 aggtagggat gacggttcgg gtattcctga cagggtggat tttcaaggtg ttgtataggg
     8641 tgtaggagga ttcgtaaaag gtgggatgca gggtgtgctt cagcccgctg catcaaaaat
     8701 ttttggagaa tcggcgggag tcggcggttt tggtttcggc ggggacggtg gaaatgggta
     8761 acattgacgg aatcgacgga agcggtgggc ttcagcccac cgcttgtata ttggaatcac
     8821 cgtatcatag cgccacccgc gcccacccaa ggcacacaac cgttgcgtag ctcagggagc
     8881 ggcagggcaa cccatcgaca caaccggaca gttgccggac aacacaaccg aatgcaaggc
     8941 aggtttatga tgagtaccca ataccattac gcaggtatag tgaattaaat ctaaaccagt
     9001 acagcgttgg
//
LOCUS       DAXIFS010000069         8922 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.069, whole genome shotgun sequence.
ACCESSION   DAXIFS010000069 DAXIFS010000000
VERSION     DAXIFS010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8922
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.069"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            188..622
                     /locus_tag="ACFOCA_001131"
     CDS             188..622
                     /locus_tag="ACFOCA_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HFC6987856.1"
                     /translation="MNFALSVITFTLASFLPVPPAEAAVFTWKDGGGNSYSDVPKQLH
                     PDQSQILNLRTRQTKPAVKPAQADAGKRTDGAAQENNPDTAEKNRQLEEEKKRIAETE
                     RQNKEENCRISKMNLKAVGNSNAKNKDDLIRKYNNAVNKYCR"
     gene            complement(671..2014)
                     /locus_tag="ACFOCA_001132"
     CDS             complement(671..2014)
                     /locus_tag="ACFOCA_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HFC6987857.1"
                     /translation="MFHSVNVFTGETLYRRPAQDYAEFERRLADLKMRGGAFAQLGVT
                     ERAARLQKFADRLEAEKERFAEMVCEEVGRCLHECRAEIGKSIELIRYYARLAPELLA
                     HKTIATQASLSQVRFEPLGVVFAVMPWNYPVWQVLRFAVPAMCAGNACAVKPAPSVAR
                     VSQALFDLVSDGIPLAGAWLDEAGTLKAVEDTDAMAFTGSTHTGRILAAHAGANLKKT
                     VLELGGSNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITLFL
                     AECAKLKMGDPKHPDTTLAPLHREDLRDRVHGQVEDAVSNGAVCLTGGKIPQGRGWFY
                     PATVLDRVNPACRVWREEVFGPAALILRAENEEHAIALANDSPFGLGACIYTADTERA
                     WRFAEKIQAGSVFINRHTSSDLRLPFGGVKDSGYGRELSEFGLYEFVNVKTYWQK"
     gene            complement(2019..2672)
                     /locus_tag="ACFOCA_001133"
     CDS             complement(2019..2672)
                     /locus_tag="ACFOCA_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFC6987858.1"
                     /translation="MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVAR
                     TAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNL
                     GAQPETGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYSDIALIIVAGL
                     VVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG"
     gene            2823..3113
                     /gene="gatC"
                     /locus_tag="ACFOCA_001134"
     CDS             2823..3113
                     /gene="gatC"
                     /locus_tag="ACFOCA_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFC6987859.1"
                     /translation="MALTLADVDKIARLSRLHLTAAEKEKSLQELNDIFAMVEQMQTI
                     NTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAVAPEVRNRLYIVPQVIEE"
     gene            3176..4621
                     /gene="gatA"
                     /locus_tag="ACFOCA_001135"
     CDS             3176..4621
                     /gene="gatA"
                     /locus_tag="ACFOCA_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFC6987860.1"
                     /translation="MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITI
                     DQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTA
                     TVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVA
                     ARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAE
                     DCAILLNAITGFDPKDSTSLEREKEDYTRDLNQPLKGVKIGLPKEYFGEGNSADVLTA
                     LQNTIDLLKAQGAELIEVSLPQTKLSIPAYYVLASAEAGTNLSRYDGVRYGHRAAQFA
                     DLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFAR
                     CDLILAPTAPTAAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGFSGGGLPVGV
                     QLVGNYFAEAKILGAAHQIQLNSDWHGKRPE"
     gene            4618..5550
                     /locus_tag="ACFOCA_001136"
     CDS             4618..5550
                     /locus_tag="ACFOCA_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HFC6987861.1"
                     /translation="MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFE
                     QFVNASPIRQGLFLHCPQNAYPLLREFVDRRFNCKRRLDAMTADFLMAEKLFGTDILH
                     QMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHL
                     LTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQV
                     KLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLTDIESKKRSMYRKRYE
                     MLDNMVAEMKDGLKTEARGISDGIQTEKPLRRTA"
     gene            5593..7023
                     /gene="gatB"
                     /locus_tag="ACFOCA_001137"
     CDS             5593..7023
                     /gene="gatB"
                     /locus_tag="ACFOCA_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFC6987862.1"
                     /translation="MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHASVVECAL
                     PGVLPVMNREVVEKAIKLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEH
                     GKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPELR
                     SAAEAVAYAKALHSLVTWLDICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNS
                     FRFLEQAINYEAEAQIEILEDGSKVQQATMLFDPEKGETRVMRLKEDAQDYRYFPDPD
                     LLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAK
                     ASGQGKPTANWMNGELAAALNKAGLELADSPITAPRLAALVGKIADGTLSSKLAKKAF
                     EAMWAEPESTIAEIIEKHGLQQMTDTGAVEAMVDEVLANNAKAVEQFKSGNEKALNAI
                     VGQVMKASKGKANPAQVQELIKAKLA"
     gene            7115..8125
                     /locus_tag="ACFOCA_001138"
     CDS             7115..8125
                     /locus_tag="ACFOCA_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HFC6987863.1"
                     /translation="MNHTVTLPDQTTFAAGDGETVLAAAARQNLNLPHSCKSGVCGQC
                     KAELVSGDIQIGGHSEQALSEAEKAQGKILMCCTTAQSDISLNIPGYKADALPVRTLP
                     ARIESMVFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANSPDQEGILE
                     LHIRRRENGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDSGKPVILLATGTGYAP
                     IRSILLDLIRQDSGRAVHFYWGARHQDDLYALEEAQGLACRLKNACFTPVLSRPGEGW
                     QGRKGHVQDIAAQDHPDLSEYEVFACGSPAMTEQAKNLFVQQHKLPENLFFSDAFTPS
                     AS"
     gene            complement(8254..8886)
                     /gene="pdxH"
                     /locus_tag="ACFOCA_001139"
     CDS             complement(8254..8886)
                     /gene="pdxH"
                     /locus_tag="ACFOCA_001139"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HFC6987864.1"
                     /translation="MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPT
                     AVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELE
                     RQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKH
                     PLHVPRPPHWGGYIVIPDLIEFWQGRPSRLHDRIQYRLLDGGWIRERLSP"
BASE COUNT         2278 a         2744 c         2171 g         1729 t
ORIGIN      
        1 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctatattttt gggaatctgt
       61 tttaccccaa tatataaagc accatattaa ggcggagttt cttccccact ttgaaccgaa
      121 cccggaaaag acaccgccca agccaatcct gatgctgccc cggcagccaa ccatcaagga
      181 aaccctaatg aactttgctt tatccgtcat cacatttacc ctcgcctctt tcctgcccgt
      241 cccgcccgcc gaagccgccg tctttacttg gaaggacggc ggcggcaaca gctattcgga
      301 tgtgccgaaa cagcttcatc ccgaccagag ccaaatcctc aacctgcgga cgcgccaaac
      361 caaaccggcg gtcaaacccg cccaagccga cgcagggaag cgcacagacg gcgcggcaca
      421 ggaaaacaat cccgacactg ccgagaaaaa ccggcagctt gaggaagaaa agaaaagaat
      481 tgccgaaacc gaacggcaga acaaagaaga aaactgccgg atttcaaaaa tgaacctgaa
      541 agcggtggga aattcaaatg caaaaaacaa ggatgatttg attcggaaat acaataacgc
      601 cgtaaacaaa tactgccgtt aatcggctct agcgcaaacc ccatgccgtc tgaaacggca
      661 cggggtttgt ttatttctgc cagtaggttt tgacgttgac gaactcgtac agcccgaatt
      721 cggacaattc gcgcccgtaa ccggaatctt tgactccgcc gaaaggcagg cgcaaatcgc
      781 tgctggtatg gcggttgata aacaccgatc ccgcctgtat tttttcggca aaccgccaag
      841 cgcgttcggt atcggcggta taaatgcagg cacctagccc gaacggggaa tcattggcaa
      901 gggcgatggc atgttcttcg ttttcggcgc gcaaaatcag ggcggccggc ccgaatactt
      961 cttctctcca gacgcggcag gcaggattta ccctgtctaa aaccgtcgcg ggataaaacc
     1021 agcctcgccc ttgtgggatt tttccgccgg tcaggcatac cgcgccgttt gaaacggcat
     1081 cttcaacctg cccgtgaacc ctgtcccgca aatcttcgcg gtgcagcggt gcaagcgtag
     1141 tatcgggatg tttggggtcg cccattttca atttggcgca ttcggcaaga aacagcgtga
     1201 taaaacgatc ggctgcggct tcggttacga tgatgcgttt ggcggcgttg cacgattgcc
     1261 ccgcatcgcg gaaacgggaa taacaggctt ctgcggcggc gcgttccaaa tcggcatcgg
     1321 gcatcacgat aaaggcgttg ctgccgccga gttccaagac ggttttcttg aggtttgcgc
     1381 ccgcatgtgc cgcaaggatg cgccccgtat gcgtcgagcc ggtaaacgcc atcgcatcgg
     1441 tatcttcaac cgccttgagc gtgcccgcct catccaacca cgcgcctgcc aaaggaatgc
     1501 cgtctgaaac caaatcaaac aacgcctgac tgacgcgtgc cacgctgggc gcgggtttga
     1561 cggcgcacgc gttgcccgcg cacatagcgg gaacggcgaa acgcaatacc tgccagacgg
     1621 gatagttcca aggcatgacg gcaaacacca cgcccaaagg ctcaaacctt acctgactca
     1681 aactcgcctg cgtcgcgatg gttttgtggg cgagcagttc gggagcgagg cgggcgtaat
     1741 agcgtatcag ttcgatagac ttgccgattt ccgcacggca ttcgtgcagg cagcgtccga
     1801 cttcttcgca caccatttcc gcaaaacgct ctttctccgc ctccaaacgg tcggcaaatt
     1861 tttgcagacg cgcggcacgt tcggttacgc ccagttgcgc gaacgccccg ccgcgcattt
     1921 tcaaatccgc cagccgccgt tcaaactccg cataatcttg agctggacgg cggtaaagcg
     1981 tttcgcccgt aaatacattg acactgtgaa acatcgaatc aacctgccag ttgcgggaat
     2041 atcgttttca gtcccgacac aataatctcc accgataccg ccgccagcat catacccatg
     2101 atacggttta aaatcgtcag ccccgtcgcg cccagcaggc ggctgacctt ccctgcaaca
     2161 attaaaatgg cataacaaat cgcactgacc accaaaccgg ccacgataat cagcgcgatg
     2221 tcgctgtacg ttttggctgc cgaagcgtaa ataatcacgg tcgaaatacc gcccgggccg
     2281 atggtgatcg gtatggcgat gggcacgacg gcaatcgctc cggcattgcg ggcggggcgc
     2341 gcctgccccg tttccggctg cgcgccgaga ttctgcttgg cgggattgtc gttgccgttc
     2401 atcatcgaaa tggcgatcag cagcaccaaa atcccgccgc cgacctgaaa cgaaccgacg
     2461 ctgatgccca aaaccttcag cagcgtaccg ccgatcagcg caaataccgc aatcacggca
     2521 aacacggcaa cggcggccgt ccgcgcgacc ttcctgcgct ccttcgtgct gtgcccgttg
     2581 gtcaggtcaa ggtaaagcga caacgcgcta aacggattaa tcagcaccaa aaaagccaca
     2641 atcagcttgc cgatttccat gcccaatccc attatttccc cctccttcaa acccgtgcgg
     2701 caggcatccg atgctgcaaa ttgccgccgc aacggatttt tccgttataa ttaaaaattc
     2761 aagcaatacg ccccatcata cccgaacgac ggtatcttta ccatcagaca aggatgcttt
     2821 tcatggcact gacacttgcc gacgtagaca aaatcgcccg actctcccga ctgcacctga
     2881 ctgcggcaga aaaagaaaaa tcgcttcaag aattaaacga cattttcgct atggtcgaac
     2941 agatgcaaac catcaacaca gacggcatcg aaccgatggc gcatccgcac gaggccgccc
     3001 tgcgcctgcg cgaagacgaa gtaaccgaaa ccgaccgcgc cgccgaatat caggcggttg
     3061 ctccggaagt acgcaaccgt ctgtatatcg taccgcaagt tatcgaagaa taatccgaat
     3121 atgcttcaga cggcatcagc aataccgccc gaagcccttt aaggatggaa gatttatgac
     3181 ccaatacaca ttgaaacagg caagcgtcct gttgcagtcc aaacagattt ccgccgtcga
     3241 actggcaagc gcataccttg ccgccatcgc cgaaaaaaat cccgccctca acggctacat
     3301 caccatcgac caagataaaa cccttgcaga agcccgtgcc gccgacgaac gtatcgcgca
     3361 gggcaacgcc tccgcgctta ccggcgtacc cgtcgcctac aaggatattt tctgccaaac
     3421 cggctggcgc agcgcgtgcg cttccaaaat gctcgacaac ttcatctccc cttacaccgc
     3481 caccgtcgtc caaaacctgc tcgacgaagg catggtaacg ctcggccgca ccaatatgga
     3541 tgagttcgct atgggttcga ccaatgaaaa ctcattctac ggcgcggcca aaaatccgtg
     3601 gaatccggaa cacgtccccg gcggttcgtc aggcggttcc gccgccgtcg ttgccgcgcg
     3661 ccttgcccct gccgcgctcg gttcggatac cggcggctct atccgccagc ctgcatcgca
     3721 ctgcggcatt accggcatca aacctaccta cggcacggtt tcccgcttcg gtatggtcgc
     3781 ctacgcctcc agcttcgacc aggccggccc gatggcgcaa actgccgaag actgcgcgat
     3841 tctgttgaat gcaataacag gtttcgaccc caaagactcc accagtctcg aacgtgaaaa
     3901 agaagactac acccgcgatt tgaaccaacc gctcaaaggc gtgaaaatcg gtctgcccaa
     3961 agaatatttc ggcgaaggca acagcgccga tgttctgacg gcattgcaaa acaccattga
     4021 tttgctgaaa gcccaaggcg cggaattgat tgaagtttcc ctgccgcaaa ccaagctgtc
     4081 catccccgcc tactacgtcc tcgcctccgc agaagccggc accaaccttt cacgttacga
     4141 cggcgtacgt tacggacacc gtgccgccca attcgccgat ttggaagaaa tgtacggcaa
     4201 aacccgcgcc gaaggtttcg gcagcgaagt caaacgccgc atcatgatcg gcacttatgt
     4261 actgtcgcac ggctactacg atgcctacta tctcaaagcc caaaaactgc gccgcctcgt
     4321 tgccgatgat tttcagacgg catttgcacg gtgcgacctc atcctcgcgc cgaccgcacc
     4381 cactgcagcc ccaaaaatag gagcggatgc ttcgccggtt gaaacctact tgagcgatat
     4441 ctacaccatc gccgtcaacc tcgccggact gcccgcattg accctgcccg caggcttcag
     4501 cggcggcgga ctgcccgtcg gcgttcagct tgtcggcaac tacttcgccg aagccaaaat
     4561 cctcggtgcg gcgcatcaaa tccaactcaa cagcgattgg cacggcaaac gacccgaatg
     4621 aagcagaacc gcacctttac cttccccgat tttcgcaccg tttacagcta tgcgccttta
     4681 tatcggctgc aacatttaaa atacacattg cgaaaatttt tcggaaaaaa agaaatttac
     4741 gccttcgagc agtttgtcaa cgcctcccct atccgtcagg ggctgttcct ccactgcccg
     4801 caaaatgcct atccgctgct gcgcgaattt gttgacaggc gttttaactg caaacgccgt
     4861 ttagatgcga tgacggcaga ttttctcatg gcggaaaaac tgttcggcac agacatcctg
     4921 caccaaatgg aagactaccg cttccatttg gtcttggcgc acctttcaga cggcatcagc
     4981 ttgtggctca accgcaacga caactgcgtc gaagaaggcg cgtggtcttt atctttgcgc
     5041 gacgaagcag gcaaccggct gtatatggcg actttcgcct ttgtcggcac acacctgctg
     5101 acagcctccg tacaagggcc tgcgggtgaa gaagccaaag acactgtccg ccgcataacc
     5161 aaacaacttc acggcttgcg tccccaacaa ctgatggtaa ccgcactgca atatttcgcc
     5221 gccgtactcg gcttggacgg cgcaatgggc attgcacaaa aacatcaggt caaactgcgc
     5281 tggaaactta aaaagcgcgt caaaatgaat tacgacgcat tctggcagga atacggcgca
     5341 agtttggaac gggacggcta ctggcatctc ccccaaaccc ccgcccgcaa agaccttacc
     5401 gacatcgaaa gcaaaaaacg ctcgatgtac cgcaagcgtt atgaaatgct ggacaacatg
     5461 gttgcagaga tgaaggacgg tctgaaaaca gaagcacgcg gcatttcaga cggcatccaa
     5521 acggaaaaac cgctccgccg gacagcctga cgcgaagact atcgaattga tattttagag
     5581 aaagaagctc ttatgacctg ggaaaccgta atcggcttgg aaatccacgt ccaattgaac
     5641 accaaatcca aaatcttcag cggcgcatcg accgcattcg gcgcagaacc caacgcgcac
     5701 gccagcgtag tggaatgcgc gctgccgggc gtactgccgg taatgaaccg agaagtcgtt
     5761 gaaaaagcca tcaaattagg cttggctttg gatgcgaaaa tcaaccggaa aaacgtgttc
     5821 gaccgtaaaa actacttcta tcccgactta ccaaaaggct atcaaatcag ccagttggat
     5881 ttgccgattg tcgaacacgg caaattggaa atcgtagtcg gcgacgatgt gaaaaccatc
     5941 aacgtaaccc gcgcccatat ggaagaagac gcgggcaagt ccgtgcatga aggcttgaac
     6001 ggcgcgaccg gtatcgacct gaatcgcgcc ggcacgcctt tattggaagt cgtatccgaa
     6061 ccggaattgc gctccgccgc cgaagccgtt gcctacgcca aagccttgca cagcttggta
     6121 acctggctgg acatttgcga cggcaatatg gcggaaggtt cgttccgcgt cgatgccaac
     6181 gtatccgttc gcccgaaagg tcaagcggaa ttcggcacgc gccgcgagat taaaaacctc
     6241 aattccttcc gtttcttgga gcaggcgatt aattacgaag cggaagcgca aatcgagatt
     6301 ttggaagacg gcagcaaagt gcagcaggcg acgatgctgt tcgacccaga aaaaggcgaa
     6361 acccgcgtaa tgcgcctgaa agaagacgcg caagactacc gctacttccc cgacccggat
     6421 ttgttgcccg tcatcatttc agacgctcaa atgcaaaaag ccaaagcaga aatgcccgag
     6481 ctgccgaaag aaatggcggc acgtttcgtg gcagattacg gcgtgtccga atacgacgcg
     6541 cgcctgctca ccgcaagccg cgcacaggcc gcctattttg aagaagccgc caaagcaagc
     6601 gggcaaggca agccgactgc caactggatg aacggcgaac tcgccgccgc gctgaacaaa
     6661 gccggcctgg aacttgccga cagcccgatt accgccccgc gcctcgccgc gctggtgggc
     6721 aaaatcgccg acggcacatt aagcagcaag ttagcgaaaa aagcctttga agccatgtgg
     6781 gcagaacccg aatccaccat tgccgaaatc attgaaaaac acggcttgca gcaaatgacc
     6841 gataccggcg cagttgaagc gatggtggac gaagtgctgg caaacaacgc caaagccgtg
     6901 gaacagttta aatccggcaa cgaaaaagcc ctgaatgcga ttgtgggaca agtgatgaaa
     6961 gccagcaaag gcaaagccaa ccccgcgcaa gttcaagaac tgattaaagc caaacttgcc
     7021 tgataagcaa gatgccgtct gaaacccaga tccgacgttc agacggcgtt ttcacagtct
     7081 gaccacatta aaacagcata aaaaacaata ttccatgaac cacaccgtta ccctgcccga
     7141 ccaaaccacc tttgccgccg gcgacggtga aaccgttttg gccgctgccg cccgtcaaaa
     7201 cctcaatctg ccccattcct gcaaaagcgg tgtctgcggg caatgcaaag ccgaactggt
     7261 cagcggcgat attcaaatag gcggacactc ggaacaggct ttatccgaag cagaaaaagc
     7321 gcaaggcaag attttgatgt gctgcaccac tgcgcaaagc gacatcagcc tcaacatccc
     7381 cggctacaaa gccgatgccc tacccgtccg caccctgccc gcacgcatcg aaagtatggt
     7441 tttcaaacac gatgtcgccc tcttgaaact tgccctgccc aaagcccctc cgtttgcctt
     7501 ctatgctggg caatacatcg atttactgct gccgggcaac gtcagccgca gctactccat
     7561 cgccaattcg cccgaccaag aaggcatttt ggaactacac atccgcaggc gcgaaaacgg
     7621 tgtctgctcg gaaatgattt tcggcagcga acccaaagtc aaagaaaaag gcatcgtccg
     7681 cgttaaaggc ccgctcggtt cgtttaccct gcaggaagac agcggcaaac ccgtcatcct
     7741 gctggcaacc ggcacaggct acgcccccat ccgcagcatc ctgctcgacc ttatccgcca
     7801 agacagcggc cgcgccgtcc atttctactg gggcgcgcgt catcaagatg atttgtatgc
     7861 cctcgaagaa gcacaagggt tggcatgccg tctgaaaaac gcctgcttca cccccgtatt
     7921 gtcccgcccc ggagagggct ggcagggaag aaaagggcac gtacaagaca tcgcggcaca
     7981 agaccacccc gacctgtcgg aatacgaagt atttgcctgc ggctctccgg ccatgaccga
     8041 acaagcaaaa aatctgtttg tgcaacagca taagctgccg gaaaacttgt ttttctccga
     8101 cgcattcacg ccgtccgcat cataattccc cggtataaaa aagattcagg ctttccgttc
     8161 ggaacacaaa aaacttcccg tccgtatttt ccccataaaa aatgccgtct gaagcccgat
     8221 tccggttttc agacggcata tgttttttcc tgttcaaggc gacagccgct cgcgtatcca
     8281 gccaccatcc agcaaacggt attggatgcg gtcgtgcagc ctgctcggcc tgccctgcca
     8341 aaactcaatc aaatcgggaa tcacaatata gccgccccaa tgcggcggac gcggcacgtg
     8401 caaaggatgt ttgagtccga ccgccgccgc ctttgccacc aataccgcct tgttcggaat
     8461 cacctcgctc tgcgcacttg cccacgcacc caaacggctc tgatacgggc ggctctcaaa
     8521 atattcgtcc gacaacttct ccgccagcct ttcaacacgc ccttccacgc gcacctgacg
     8581 ctccagctcc ggccaaaaaa acgtcatcgc cgcaaatgga tgagcatcca gcgaacgccc
     8641 cttgcggctg tgataattcg taaagaaaac aaaaccttca gaattaactt ccttcagcag
     8701 caccatacgg ctgttaggcc tgccgcgtcc gtcgaccgcc gccacattga ccgccgtcgg
     8761 ctcgttgacc tgtgcgcgta ccgcctcgtc caaccaccgc tcgaactgct cgatcggatt
     8821 gtcggcgcaa tcgccttccg acaattcccg tttgctgtaa tcttcccgaa tattgtgcaa
     8881 atccatttac cgctcctctt aatagtggat taacaaaaac ca
//
LOCUS       DAXIFS010000070         8904 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.070, whole genome shotgun sequence.
ACCESSION   DAXIFS010000070 DAXIFS010000000
VERSION     DAXIFS010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8904
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.070"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..1183)
                     /locus_tag="ACFOCA_001140"
                     /pseudo
     CDS             complement(1..1183)
                     /locus_tag="ACFOCA_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678130.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
     gene            1329..2033
                     /locus_tag="ACFOCA_001141"
     CDS             1329..2033
                     /locus_tag="ACFOCA_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248833.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFC6987865.1"
                     /translation="MLRSILAASLLAVSFPTAAEALNYNIVEFSESAGVEAVQDTMSA
                     RFQVTAEGRDKNAVNAEFVKKFNNFTRKSKNGSFKTELVSRSAMPRYQYTNGRRIQTG
                     WEERAEFKVEGRDFDALNRFIADVQADAALEYTDFHVSRERRNEVIDQVSKDAVLRFK
                     ARAEKLAGVLGASGYKIVKLNLGHIGSHIAGGGAAQAKMLRAMPMAASVNMEGADSAA
                     PGVEEISISVNGTVQF"
     gene            complement(2097..2663)
                     /gene="dcd"
                     /locus_tag="ACFOCA_001142"
     CDS             complement(2097..2663)
                     /gene="dcd"
                     /locus_tag="ACFOCA_001142"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFC6987866.1"
                     /translation="MSIKSDKWIRRMSEEFGMIDPFEPNQIKEADGKRIISYGTSSYG
                     YDIRCANEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFF
                     ESDEICETSYKDRNGKYMGQTGVTLPKA"
     gene            complement(2729..3145)
                     /locus_tag="ACFOCA_001143"
     CDS             complement(2729..3145)
                     /locus_tag="ACFOCA_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MORN repeat-containing protein"
                     /protein_id="HFC6987867.1"
                     /translation="MLKHLAFLLPAMMFALPAASAVLTSYQEPGCTYEGDVGKDGKPA
                     GKGTWRCQDGRNYTGSFKNGKFDGQGVYTVAANREIFIEPFNSDSTKFRNMVLSGTFK
                     KGLAHGRFTVSQNGETLFIMKCENGMIKEVKLPKNK"
     gene            complement(3197..4096)
                     /locus_tag="ACFOCA_001144"
     CDS             complement(3197..4096)
                     /locus_tag="ACFOCA_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HFC6987868.1"
                     /translation="MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGF
                     TAPVSFSPELVFPADFTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEK
                     QELKEQITDDLLPRAFTRSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLE
                     ASLPNTKQSPSSLMTGWLLQGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVV
                     QHVKNGKTVTQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAAGLAFASQ
                     ILMAESVSIMLEELVSYLGGWQD"
     gene            complement(4127..5584)
                     /gene="der"
                     /locus_tag="ACFOCA_001145"
     CDS             complement(4127..5584)
                     /gene="der"
                     /locus_tag="ACFOCA_001145"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFC6987869.1"
                     /translation="MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGH
                     GKVGSKPYLVIDTGGFEPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKI
                     IADRLRQSPRPVYLAVNKGEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDIL
                     ETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDF
                     EREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDA
                     TIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI
                     DGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNPPV
                     IVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPYENAEDKPKKKPLR
                     RVSLSNRIEKREGRKEEKNRFKKKTKVSVKKQFSK"
     gene            complement(5738..6367)
                     /locus_tag="ACFOCA_001146"
     CDS             complement(5738..6367)
                     /locus_tag="ACFOCA_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HFC6987870.1"
                     /translation="MAAHLEEQQELDNFKYFWKTTGKWLFALLILAALGYLGYTVYQN
                     RATSQNQEAAAVLANIVEKAQNKAPQSEINAELTKLQQSYPHSISTAQATLMAAATEF
                     DAQRYDVAEGHLKWVLSNQKDSLIQALAAQRLGVVLLQQKKYDAALAALDTPVEADFA
                     PLLMETKGDVYAAQGKSQEALKNYGQALEKMPQDSVGRELVQMKLDSLK"
     gene            complement(6368..7663)
                     /gene="hisS"
                     /locus_tag="ACFOCA_001147"
     CDS             complement(6368..7663)
                     /gene="hisS"
                     /locus_tag="ACFOCA_001147"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFC6987871.1"
                     /translation="MAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYG
                     YQQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVE
                     HNLLYNSPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLW
                     EKLGIREYLTLEINSLGNREERAAHRAALVEYLTRYEDKLDEDSKRRLKTNPLRVLDT
                     KNPDLQEICNAAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTV
                     FEWTTDKLGAQATVCGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNA
                     APDVYAMHQGERADLQVMKYAQALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIV
                     AQDELANGTVTLKDMNGAHGQQTVAAADLTNTLQQWKNA"
     gene            complement(7789..8445)
                     /locus_tag="ACFOCA_001148"
     CDS             complement(7789..8445)
                     /locus_tag="ACFOCA_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6987872.1"
                     /translation="MMKFKYVFLLACVVVSLSYRLNAAPMFNDNPVVYGKIKVQSWKA
                     RRDFNIVKQDLDFSCGAASVATLLNNFYGQTLTEEEVLKKLDKEQMRASFEDMRRIMP
                     DLGFEAKGYALSFEQLAQLKIPVIVYLKYRKDDHFSVLRGIDGNTVLLADPSLGHVSM
                     SRAQFLDAWQTREGNLAGKILAVVPKKAETISNKLFFTHHPKRQTEFAVRQIRQARAE
                     "
     gene            complement(8503..8693)
                     /locus_tag="ACFOCA_001149"
                     /pseudo
     CDS             complement(8503..8693)
                     /locus_tag="ACFOCA_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581138.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2024 a         2162 c         2357 g         2361 t
ORIGIN      
        1 cgtattttct taccgtattc tgcgattgcc tgtcggaaaa tgccgatcaa cctgcctata
       61 acggcatttt cgccaaattc gttcagacag ttttccctaa gtcgggcagg ttcaaaatca
      121 gagtggtgtt catacatttt gatgagtgcg tcggcaaggg catcgtcgtc gtcaacagga
      181 accaaatatc cgttgccgtc tgaaacaata gattccgcac cgccgcagcg tgttgcaatg
      241 acgggcaatc cttgggacag tgcttcgata tagactacgc cgaaggtttc ggtgcggctg
      301 gcaaggacga atgcgtcgct gttcctcatc aaatccaaga ctgcttcggg ctgcaatgcg
      361 cccaaaaatg taacggcatg ggtaatgccc aagtctgccg cctgctgttt cagccgctgt
      421 tcttcctgtc cgctgccgcc gatgttcagg cgcagttgcg ggcattgtgc caacgcccgg
      481 gcaaaggcag tgagtaggac atcgtgtcct ttgagacggc gaaggtgcga gacggtgcag
      541 aacacgaaat gcggtttgtt gtttttttct ctttgttcaa acggtcggtt gaatattccg
      601 cccagtatgt tgggggaggt actgccattc gcagccgtat ttgtgttgca ggacgtgtgc
      661 gaaatggcgg ctgacagcga gcagtgcgga ggcgtgcgcc gctgcttttt ccatcggctg
      721 ccattggtgg ggacggatca gaccgcgcgt gatggtgctg ctgtgttccg tgacgacata
      781 ggggatgccg tatttttggg aaattttttg ggcgagtatg ccggcatagt tcatgcggtg
      841 ggcgtgaatc aggtcgggca gcccgttttc gcggatgtag tgtttgaaag ctttcaaacc
      901 cgcacacacc cagcggatgc agtcgatgtc gatgaacgga aagcggggga agaaatatat
      961 gccgtgccat gcatagatgt ccaaaccgct ttgccgatat tttgcaaaac cgtaaggccg
     1021 gtcaggatgc ttgctgtttc tttccgcaag tagcggaaca tcggtgcaag cacggcggtt
     1081 ttgatgcctt tcctctgcaa tgccagtgcc tgattttgaa aaaaatcccg tccacatcct
     1141 gttcggattg cggataccat gaggggatga cgaggacgtg caagggttcg ggcatagtgg
     1201 gattccgtat cggaaaggcg gttattataa gacagacgca gaccgaatat ttaaattgtt
     1261 gccttacgct aatgcaattt agcgcgccga tatgctagat tggcggtttt ataagtaagg
     1321 atacggatat gttgcgttct attttggcgg cttccctgct ggcggtatct tttccgacgg
     1381 cggctgaagc attgaattac aatattgtcg aattttctga atcggcgggt gtcgaggcgg
     1441 ttcaggatac aatgtccgca cgtttccaag tgacggcgga aggacgggac aaaaatgccg
     1501 tcaatgccga gtttgttaaa aaattcaaca atttcaccag aaaatcaaaa aatggtagct
     1561 ttaaaaccga attggtatcg cgcagtgcga tgccgcgcta tcaatatacc aacggcagac
     1621 gcattcaaac aggttgggag gagcgtgcgg aatttaaggt cgagggtagg gattttgatg
     1681 cgttgaaccg ttttattgcc gatgttcagg cagatgccgc gttggaatat acggatttcc
     1741 atgtgtcgcg cgaacgccgc aacgaggtca tcgatcaggt cagcaaggat gccgttttgc
     1801 gtttcaaggc gcgtgccgaa aagttggcgg gcgttttggg tgcgtccggt tataaaatcg
     1861 tcaaattaaa tttgggacac atcggcagcc atatcgcggg agggggagct gctcaggcaa
     1921 aaatgcttcg tgccatgccg atggcggcaa gcgtcaatat ggagggtgcg gattccgccg
     1981 cgcctggtgt ggaggaaatc agcatcagcg tcaatgggac ggttcagttc tgatttgagg
     2041 tgaacggcaa atgccgtctg aaacccgacg ataagggttc agacggcatt tatatttcag
     2101 gctttgggca gggtaacgcc ggtttgcccc atatatttgc cgttgcggtc tttgtatgag
     2161 gtttcgcaga tttcgtcgct ctcgaagaag aggacttgcg ccacaccttc gcctgcgtag
     2221 attttggcgg gcaggggggt ggtgttggaa aattcgaggg taacgtagcc ttcccattcc
     2281 ggttcgaacg gggtaacgtt gacgataatg ccgcagcggg cgtaggtgga tttgcccaag
     2341 cagacggtca ggacgttgcg cgggatgcgg aaatattcga ccgtgcgcgc cagtgcgaag
     2401 gaattgggcg ggatgatgca gcagtcgtct tcaacggtaa cgaagttttt cgggtcgaag
     2461 tttttgggat cgacgatggt gctgttgatg ttggtgaaga ttttaaattc gtttgcgcag
     2521 cggatgtcgt agccgtagct ggacgtaccg taggagatga tgcgtttgcc gtcggcttct
     2581 ttgatttggt tcggctcgaa agggtcgatc atgccgaatt cttcgctcat tcggcgtatc
     2641 catttgtcgg acttgatgct cataatgttt tccttgtttc ttgcagtgtt cggacaaagc
     2701 attgggggat gccgtctgaa aacggggctt atttgttttt gggcagcttc acttctttaa
     2761 tcatgccgtt ttcgcatttc ataatgaaga gggtttcgcc gttttgcgag acggtaaatc
     2821 tgccgtgtgc caagcctttt ttgaatgtgc ccgagagtac catgttgcgg aatttggtac
     2881 tgtcggaatt gaacggttcg ataaatattt cgcggttggc ggcaacggta taaacgcctt
     2941 gtccgtcgaa tttgccattt ttaaacgaac cggtatagtt gcgcccgtct tggcagcgcc
     3001 atgtgccttt gccggcgggt ttaccgtctt tgccgacatc gccttcgtag gtgcagccgg
     3061 gttcttgata ggaagtcaga acggcggacg cggcggggag ggcgaacatc atggcgggca
     3121 gtaggaatgc gagatgttta agcataaggg ttattccatt ggattttggc tgacggtata
     3181 aaagccgtct gaaaaatcaa tcttgccagc cgcccaaata ggaaaccagc tcttccaaca
     3241 tgatgctgac ggattccgcc atcaggattt gcgaggcgaa ggcgagaccg gcggcatcgt
     3301 cgccgttgct ttcggcttct tcctgcaata cgtcgaggta ttggatgcgc ttgagtgtga
     3361 agtcttgagt gaggataaag gcgatttgtt cgcgccaaac caaaccgagc tgggttacgg
     3421 ttttaccgtt tttgacgtgt tgaaccactt cgtcggcggt taaatcttgt ttggatactt
     3481 tgacgacggg aacaatatcg cccgtgcctt tgagttcgca atcgctgtcc aattcaaaac
     3541 cgccttcgca atgcccttgc aacagccagc cggtcatcaa ggaagagggc gattgcttgg
     3601 tattcggcag cgaggcttcc aaaccgccca aagcttcgcg cagcttggtc aggatgtttt
     3661 ctgctttggc ggaagccgcg ttattgacga gcaggtagcc gtggcgggtg ttaaacaccg
     3721 cttctgtacg gctgctgcgg gtaaacgctc ggggcagcag gtcgtctgta atttgctctt
     3781 taagctcttg tttttcttta cggccgacat tgcgggcttc attgttttgg atttccgcta
     3841 ccttctcttc caaaatatcg cggatgacgc cggcaggcag gactttttct tcttttttca
     3901 gggcgacgcg caaggtaaag tcggcaggga aaacgagttc aggggagaat gaaaccggtg
     3961 cggtaaagcc ttcgctgaac cagtctaagc cttggcaatg ggtaaattca gcttcagcaa
     4021 gtttgtcggc aagtacgtct gcctcaggca gcttttcttt gttgagcgga taaaaactaa
     4081 tctgcttgaa ccacataatg tttcctattg tttgaaatgt cgggaattat ttgctgaatt
     4141 gttttttcac actgactttg gttttcttct tgaagcggtt tttctcttct ttgcggcctt
     4201 cgcgtttctc aatacggttg ctcaggctga cgcggcgcag cggttttttc ttcggtttgt
     4261 cttccgcatt ttcatacggg ttttccgaaa cattgtattg aatccgcaac ggcgtgcctt
     4321 gcaggttgaa ggctttgcgg aacgtttggg tcagatagcg cgtatagctg tcggaaatcg
     4381 cgtgcagcga attgccgtgt accacaatta cgggagggtt catgccgcct tggtgggcat
     4441 aacgcatttt cggacgcacc aagccggcac gcggcggttg ctgacgctcg atcgcgcttt
     4501 gtaatacgcg cgtgattttc ggcgtcggca tcttaatcat cgccgcgttg taggcagcct
     4561 gaatgctgtc aaacaaaccg tctataccgc gctctttcaa tgcggaaata aagtggaact
     4621 tggcaaaatc gaggaaatac agtttgcggt tgatatcgcg tttcacttgc tcgcgacgct
     4681 cttcgctgat gccgtcccat ttgttgacgg caaccaccaa ggcgcggcct gcttccaaag
     4741 caaaaccggc aatcgtcgca tcttggtcgg cgatgtcctg ctgcgcgtcc aataccaaaa
     4801 cagcgacgtt tgccgcttca accgcctgca tcgctttgat aacggagaat ttttctactg
     4861 cttcatccac tttgccgcga cggcgcacgc ctgcggtatc gatgatggta aacggtttgc
     4921 cttcgcgttc gaaatcgatg tggatgctgt cgcgtgtcgt gcctgccata tcgaaagcaa
     4981 tcacgcgctc ttcgccgagg atggcgttaa ccagtgtgga tttgccgacg ttcggacggc
     5041 cgatgacggc aaagacggga tgttttgcat cggcttcttc ggcttccggc tctgggaagg
     5101 tttccaaaat atcttcaatc agataataca cgccatcgcc gtgcgcacct gaaataacat
     5161 aagggtcgcc caaagcaagt tcgtagaact cggcggcaag cacggccctg ttgccgcctt
     5221 cgcctttgtt taccgccaga taaacagggc gcgggctttg gcgcaggcgg tcggcaatga
     5281 ttttgtcttg cggggtcagg ccggtacggc cgtccaccaa aaacacaacc gcatcagctt
     5341 catcgacagc ctgcaaggtt tgttttgcca tttcgtgcaa aatgccgctg tccacaaccg
     5401 gctcgaaacc tccggtatcg atgaccaaat aaggtttgct gccgactttg ccgtgtccgt
     5461 aatggcggtc gcgggtcagg ccgggcaggt cgtgtacgag tgcgtctttg gtgcgcgtca
     5521 aacggttgaa taaagtagat ttgccgacgt tagggcggcc gacaagcgcg atggtgggtt
     5581 tcattattgg gtctttctgt gtcaagtgcc gttcgggaga actgaacacg agcaggtgtc
     5641 cgttggacac ggtaaatagg ttcttcacgg caagaggcca taaagaggga gggtaaaatg
     5701 ccgtctgata aataatggac agcatttcag acggcattta tttcagcgaa tcaagtttca
     5761 tttgaaccaa ttcgcgaccg acagaatctt gaggcatttt ttctaaagcc tgtccgtagt
     5821 tttttaaggc ttcctggctt tttccctgtg cggcatagac atcgcctttg gtttccatca
     5881 gcaggggggc gaagtccgct tcaaccggcg tatcgagcgc ggcaagcgcg gcatcgtatt
     5941 ttttttgttg caacaacaca acgcccagac gctgcgccgc caacgcttga atcaggctgt
     6001 ctttttggtt ggacaacacc catttcaaat ggccttcggc aacatcgtaa cgctgtgcgt
     6061 caaattcggt tgccgccgcc atcagcgtgg cttgggcggt ggaaatggaa tgcgggtagc
     6121 tttgctggag tttggtcaat tcggcattga tttcgctttg cggggctttg ttttgcgcct
     6181 tttccacgat gtttgccagc accgccgccg cttcctgatt ttgggaagtc gcacggtttt
     6241 ggtaaaccgt gtatcccaag tagccgagcg ccgccaaaat cagcagggca aacagccatt
     6301 tgcccgtggt tttccaaaaa tatttaaagt tgtccaactc ttgttgttct tccaaatggg
     6361 ctgccattta tgcgttcttc cattgttgta aagtgtttgt caaatcagcg gcggcgacag
     6421 tttgctgacc gtgtgcgccg ttcatgtctt tgagcgtaac cgtaccgttc gccagttcgt
     6481 cttgcgccac aatcagggca aagcgcgcgc cgctgttgtc ggcttttttc atttgtgctt
     6541 tcaggctttg atagccggaa tgctgcatta cattgaaacc ttgcgcgcgc aaggcttgcg
     6601 cgtatttcat cacctgcaag tccgcccttt cgccttggtg cattgcatag acatcaggcg
     6661 cagcgttcac ttccagcgag ccgtattcgc tcaccaaaag cagcagccgt tcgatgccca
     6721 tcgcaaagcc gatggacggc gcaggtttgc cgccaagttc ctcaatcaaa ccatcgtaac
     6781 ggccgccgcc gcacacagtt gcctgcgcgc cgagtttgtc ggtcgtccac tcaaaaaccg
     6841 tctgattgta ataatccaaa ccgcgaacca agcgcggatt ttcaatatat tggataccca
     6901 aaccgtccaa catcgccttg aagcgtgcat agtggttttg cgaagcctcg cccaaataat
     6961 ccaccaaacg cggcgcggcg ttgcagattt cctgcaaatc agggtttttc gtatctaaaa
     7021 cacgcaaagg attggttttc agacggcgtt tgctgtcttc gtccaattta tcttcatagc
     7081 gtgtcaaata ttcaaccaac gccgcacggt gtgccgctcg ctcctcacgg ttgcctaagc
     7141 tattgatttc caaagtcagg tattcgcgga tacccaattt ttcccacaag tcggcagaca
     7201 tcgcgatgat ttccgcatcg atatccggcc cttcaaaacc caaagcctcg ataccgacct
     7261 gatggaattg acgataacgg cctttttgcg gacgctcgcg gcggaacatc ggccccatat
     7321 accacagctt ttgcgggctg ttgtacagaa ggttgtgttc gaccaccgca cgcagacaag
     7381 aagccgtacc ttccggacgc aggctcaaac tcaaagaatc gtttgaatcg gaaaaggtgt
     7441 acatttcctt gccgaccaca tcggtttctt cgccgatgga gcggacaaac aaaccggttt
     7501 gctcgacaat cggcgtacgg atttgctgat agccgtaagc gcgcgtccag cggtttaccg
     7561 tatcctcaaa cgcctgccaa aacgcagccg tcagtttgaa atctttttgc tcgacaggca
     7621 gaaggtcgtt catgcctttg acggattgga ttttttgtgc catttcaagt aagaatgctt
     7681 aaatcaaatt gcgggcgatt atagcggatt tttaagggtt tgtgaggttg ggggtggttt
     7741 gcggacgggt aaaatgccgt ctgaaacagt tttcagacgg catttgactt actctgcacg
     7801 tgcttgcctg atttgtcgga ctgcaaactc tgtctgccgc ttgggatgat gtgtgaaaaa
     7861 caatttattt gaaattgtct cggctttttt cggcacgacc gccaaaatct tacctgccaa
     7921 atttccctca cgggtttgcc aagcatccaa aaactgcgcc ctgctcatcg aaacatgacc
     7981 cagcgacggg tcggcaagca aaaccgtatt gccgtctata ccgcgcaata ccgagaaatg
     8041 atcatcctta cggtatttca gatacacgat gacggggatt ttcaactgcg cgagctgctc
     8101 gaaagacagg gcatagcctt tcgcttcaaa acccaaatct ggcataatgc gccgcatatc
     8161 ctcaaacgac gcgcgcatct gctccttatc cagctttttc aacacttctt cttccgtcag
     8221 cgtttgcccg taaaaattgt tcaaaagcgt cgccaccgaa gccgccccgc aggaaaaatc
     8281 caaatcctgc tttacaatat tgaaatcccg ccgcgctttc caactctgca ctttgatttt
     8341 tccgtaaaca acaggattat cgttaaacat cggtgcagca ttcagacgat aagataaaga
     8401 aacgacaaca cacgccaaca gaaaaacata tttgaacttc atcatattgt ccacataaag
     8461 ggcagcctga aaatctttca ggctgccctt gtcaaattat tcctagcttt cggctttttt
     8521 ggcaaaccaa acaatccgat tacccgcata atactttcca tttattgaaa tccgacaagc
     8581 cgcgcccaaa aatgccatgc actgtcgatt tccgcagcaa tctttgtacc gttttcttca
     8641 aattccaaat attcacccaa taataaactt gaaacagaac gcgtgggcag caagtgccca
     8701 ccctacgctt attcaaataa tttgattaaa taaagaataa agaaaatgca tcaggaacaa
     8761 aattataatc tgccacctga ctcacaccgc ttttaaagta aggggcatca aaatcaaaac
     8821 cgcaaaaaaa ataatttttg cattgatttt taatagattt aaaattcgaa tatagtgttt
     8881 ctccagattt aaaaagttta tctt
//
LOCUS       DAXIFS010000071         8874 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.071, whole genome shotgun sequence.
ACCESSION   DAXIFS010000071 DAXIFS010000000
VERSION     DAXIFS010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8874
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.071"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(87..3572)
                     /gene="smc"
                     /locus_tag="ACFOCA_001150"
     CDS             complement(87..3572)
                     /gene="smc"
                     /locus_tag="ACFOCA_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HFC6987873.1"
                     /translation="MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAV
                     RWVLGEASAKQLRGESMQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVS
                     IKRQLTRQGESTYFINNQTVRRRDITDLFLGTGVGARGYAVIEQGMISRIIEARPEEL
                     RAYIEEAAGVSKYKERRKETEGRLKDTREHLQRLGDLQNELARQVEKLEKQAETAERY
                     KSLTAQLNRQQDLLDYAQWQQSLAAADKATEQHQSLQAQQDETAAQVQALNDEVHALQ
                     TAEQSQQQAVHELSNKRGVLREQIARLEEQIRHQQNLHQRIERDKQAAQAQLQRIHQE
                     QQQIRVQLEENELYVEEKQTELAEWAMQVAEHEERLPELEETQTALNAAFQTQQDEAN
                     RIRRELALKQQQLAHAEQTVAKHEERKGRLKQENQALNLPDEAETAAVQEAAALLQSR
                     QEHYEEQIIAAEEALHAAREAFQTASNRFQSLKQQHITLQAQQQALSQILSQQQEAAD
                     FWQATDHAAAPQLWQHITAPAEWQHALSVILAERLHARAVPQGFVPPEPLPQGQAAWL
                     SDGLSGGIKKSLPVQALLNQIQAQPPFQTALHYWLDGVLCAPDLSYALAHQNDLGAHQ
                     IWLTPEGHQVDKVSVLLYAKPAQESLIAQKARLDGIASELENLAPELSAAEAAFKQAE
                     AAVRSSEVQHKNLMQQQQQHTRQYSQAQQRAAELLARTNQGQIRREHIERELAQLAEE
                     QTVLQHTSDGLSDDIVTLQEAAAELEHQQQTTAHSRQEQQGRLKQAQLALLEANRQYG
                     LAEVAVHKLNQQKQNYRQQIAQLEQQTLDWQERQQELVLAYETEFQNDEQHIKLDELT
                     ESVHTLDEEYIAVQEKLTQIQEQGREQYARVQTLQTQLPQLQAATQTALLQQQEALIN
                     AKRYHQNLTERAADLDALEALAKESPKVLNSSIGSLSQQIEALGAVNLAALQELEEAR
                     ERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFFPTLFGGGE
                     ATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSLNPAPFCL
                     LDEVDAPLDDANTSRFCNLVKEMSAQTQFLYISHNRLTMEMAEQLVGVTMQEKGVSRV
                     VAVDIKQALEMAEAV"
     gene            3574..3825
                     /locus_tag="ACFOCA_001151"
     CDS             3574..3825
                     /locus_tag="ACFOCA_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009345706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987874.1"
                     /translation="MVGKNKKEAYFNGNPAAPPHILPAKPYRIPHPRCRLKPSDGIFN
                     APEPRFRQRPMLGAAFAVLPRRRARYNPPRHPPDLETCL"
     gene            3822..4544
                     /gene="lpxH"
                     /locus_tag="ACFOCA_001152"
     CDS             3822..4544
                     /gene="lpxH"
                     /locus_tag="ACFOCA_001152"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFC6987875.1"
                     /translation="MKPAYFISDLHLSEKHPELTALLLRFLRSSAAGQARAVYILGDL
                     FDFWVGDDEVSELNTSVAREIRKLSDKGVAVFFVRGNRDFLIGQDFCRQAGMTLLPDY
                     SVLDLFGCKTLICHGDTLCTDDRAYQRFRKIVHRKRLQKLFLMLPLKWRTRLAAKIRR
                     VSKMEKQVKPADIMDVNAAFTARQVRAFNAERLIHGHTHREHIHHENGFTRIVLGDWH
                     NDYASILRVDGDGAVFVPLEKC"
     gene            4813..6399
                     /locus_tag="ACFOCA_001153"
     CDS             4813..6399
                     /locus_tag="ACFOCA_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HFC6987876.1"
                     /translation="MALFLSIFPIVLLIWLMVKKNSMPSYVALPITAVLIYAIKLFYF
                     GDAGMLLNATAASGLVKTLTPITVIFGAIMFNRMMETTGCIDVIRKWLATISPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILMSLGFNPLKVAIFTLVMNSVPVSFGAVGT
                     PTWFGFAPLNLSAEDILAIGRQTGVMHFFAGFVIPVIGLGFIVPWSEIRKNLGFVAIA
                     VFSCTIPYVALAMVNEEFPSLVAGAIGLMVSVFAANQGWGLSKDHAKDPNAEKVPFAQ
                     VAKALAPLGMLIGMLVVTRIKQLGIKGILTSKEEWFSFQLPFDLSKITVSDSLTITFG
                     NIFGQDVSASYQTLYVPAWIPFVLTVWICILLYKTKFKDAWTIYSVTFNQTKKPLLAL
                     MGALIMVQLMLVGGDNSMVKIIGKEFAAMAGEHWVYFSPYLGAIGAFFSGSNTVSNLT
                     FGPIQQQIALDTGLSVTLILALQSVGGAMGNMVCLNNIIAVCTVLDVKNSEGAIIKKT
                     VIPMAIYGVIAVVAAMIFFL"
     gene            complement(6567..6770)
                     /locus_tag="ACFOCA_001154"
     CDS             complement(6567..6770)
                     /locus_tag="ACFOCA_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HFC6987877.1"
                     /translation="MDNLNLQEISVLPENLPLYCSGPDNEQWNGHPRVFLPLCEGESG
                     SVACPYCGTRYRLDGKMPHHHYA"
     gene            6886..7383
                     /locus_tag="ACFOCA_001155"
     CDS             6886..7383
                     /locus_tag="ACFOCA_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-mimic protein DMP19"
                     /protein_id="HFC6987878.1"
                     /translation="MTALTLPEDIRQQEPSALLYPLVSAYLEHTAQTGDESLSCLSDD
                     QHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKAL
                     YEQHGKTIETLADGGADIESLRKQFPDFEEWDGAYYEAAEQDLPLLAEHIQSNWETFA
                     HIGQA"
     gene            7465..8658
                     /locus_tag="ACFOCA_001156"
     CDS             7465..8658
                     /locus_tag="ACFOCA_001156"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HFC6987879.1"
                     /translation="MFFKHIEAAPADPILGLGEAFKAETRPEKVNLGIGVYKDASGAT
                     PLVKAVKEAEKRLLESETTKNYLTIDGVADYNAQTQILLFGKDHEIIASRRAKTAQSL
                     GGTGALRIAAEFAKRQLNAQTIWISNPTWPNHNAIAKAVGIQDKPYRYYDAAKHGLDW
                     DGMIEDLSQAQKGDIVLLHGCCHNPTGIDPTPEQWETLAKLSAEKGWLPLFDFAYQGF
                     GNGLEEDAYGLRVFLKHNTELLIASSYSKNFGMYNERVGAFTLVAEDEATAARAHSQV
                     KTIIRTLYSNPASHGANTIALVLKNDDLKAQWIAELDEMRGRIKAMRQKFVELLKAKG
                     ASQDFDFIIEQNGMFSFSGLTPEQVDRLKNEFAIYAVRSGRINVAGITDDNIDYLCES
                     IVKVL"
BASE COUNT         1847 a         2549 c         2370 g         2108 t
ORIGIN      
        1 tttaaattta attcactata ccgtctgaaa acctgtatcg caacacgtca ttaaaaacgg
       61 caagattcag ccgttctgca acccgttcaa acggcttccg ccatttccaa cgcctgcttg
      121 atgtccacgg cgacgacgcg cgatacgcct ttttcctgca tggttacgcc gaccagctgc
      181 tctgccattt ccatggtcag gcggttgtgg gagatgtaga ggaactgggt ttgcgccgac
      241 atttctttga ccaggttgca gaaacgcgag gtgttggcgt cgtccagcgg ggcatcgacc
      301 tcgtccaaaa ggcagaacgg agcggggttg aggctgaaca gagcgaacac gaggctcatg
      361 gcggtgaggg ctttttcgcc gccggagagg aggtggatgg tgctgttttt cttgccgggc
      421 ggacgcgcca taatggacac accggcggtc agtaggtcgt cgcctatcat tttgagagtg
      481 gcttcgccgc cgccgaacag ggtcgggaag aaggtttgga ctttgccgtt gacggcgtcg
      541 aaggtttctt tgaaacgcgc tttggttttg tcgtcgattt gggcgatggc ttcttccaaa
      601 atggtgatgg cggcctgcac gtcttcgctt tggctgcggt agtagccgtc gcgttcgcgc
      661 gcttcttcga gttcttgcag ggcggcgagg ttgaccgcgc cgagggcttc gatttgttgc
      721 gagaggctgc cgatgctgct gttcaatact ttcggcgatt ctttcgccaa cgcttcgagc
      781 gcatccaaat cggcggcgcg ttcggtcagg ttttgatggt agcgtttggc gttgatcagg
      841 gcttcctgtt gttgcaacag ggcggtttgg gtggcggcct gaagctgtgg caactgggtt
      901 tgcagggttt gtacgcgggc gtattgttcc ctaccctgct cctgaatctg cgtgagtttt
      961 tcctgcacgg cgatgtattc ttcgtccagc gtgtgtacgg attcggtcag ctcgtcgagc
     1021 ttgatgtgct gctcgtcgtt ttggaactcg gtttcatagg cgaggacaag ctcttgctgg
     1081 cgttcctgcc agtcgagggt ttgctgttca agctgggcga tttgctgccg gtagttttgt
     1141 ttttgctggt tgagtttgtg gacggcgact tcggcaagcc catattggcg gttggcttcc
     1201 aacagggcaa gctgcgcctg tttcagacgg ccttgctgct cttggcggct gtgcgcggtg
     1261 gtttgctgct ggtgttcgag ttcggcggcg gcttcctgca aggtaacgat gtcgtctgaa
     1321 agcccgtcgg acgtgtgttg caacacggtc tgttcttccg ccaactgcgc cagttcgcgc
     1381 tcgatgtgtt cgcggcggat ttgcccttgg ttggtacgcg ctaagagttc ggcggcgcgt
     1441 tgctgcgcct gactgtattg gcgcgtgtgc tgctgttgct gctgcatcag gtttttatgt
     1501 tgcacttcag acgagcgcac ggcagcttcc gcctgtttga acgcggcttc ggcggcggaa
     1561 agttcggggg cgaggttttc cagttcggac gcgatgccgt cgaggcgcgc tttttgggca
     1621 atcaggcttt cctgcgcggg tttggcatag agcaggacgc tgactttatc gacctgatga
     1681 ccttcgggcg tgagccagat ttggtgtgcg cccaaatcgt tttgatgcgc gagggcatag
     1741 ctcaaatcgg gcgcgcacaa tacgccgtcg agccagtagt gcaatgccgt ctgaaacggc
     1801 ggctgcgctt ggatttggtt cagcaatgcc tgtacgggca gggatttttt gatgccgccg
     1861 gagagaccgt ctgaaagcca cgccgcctgc ccctgcggca aaggttcggg cggtacgaaa
     1921 ccttgcggca cggcgcgggc gtgcaggcgt tctgcaagga tgacggacaa ggcgtgctgc
     1981 cactcggcag gcgcggtgat gtgttgccac agctgcggcg cggcggcgtg gtcggttgcc
     2041 tgccagaaat cggctgcttc ctgctgttgc gacaggattt gcgacaacgc ctgctgctgc
     2101 gcctgcaagg tgatatgttg ctgcttcagg ctttggaagc ggtttgaggc cgtctgaaac
     2161 gcctcgcggg cggcgtgtaa ggcttcttcg gcggcgatga tttgttcttc gtaatgctct
     2221 tgccggcttt gcaacaaggc agcggcctcc tgcacggcgg cggtttccgc ttcgtcgggc
     2281 aggttcaggg cttggttctc ctgtttcaga cggcctttgc gctcttcgtg cttggcaacg
     2341 gtttgttcgg catgggcaag ctgctgctgc ttcaacgcca gttcgcggcg gatgcggttt
     2401 gcctcgtcct gctgggtttg gaaggcggca ttgagcgcgg tttgggtttc ttccaattcg
     2461 ggcagacgct cttcgtgttc ggcaacctgc atcgcccact ccgccagctc ggtttgcttt
     2521 tcttcgacgt ataactcgtt ttcttcaagc tgcacgcgga tttgctgctg ctcttgatga
     2581 atacgctgca actgcgcctg cgccgcctgc ttgtcgcgtt cgatgcgttg gtgcaggttt
     2641 tgctgatggc ggatttgttc ttccaaacgg gcaatctgct cgcgcaacac gccgcgcttg
     2701 ttgctcaatt catgcaccgc ctgttgctgc gactgttcgg cggtctgcaa ggcgtgtact
     2761 tcgtcgttta acgcctgaac ctgcgcggcg gtttcgtcct gctgcgcctg caaagactga
     2821 tgctgctcgg tcgccttgtc ggcggcggca agcgattgct gccattgggc gtaatcgagc
     2881 aaatcctgtt gccggttcaa ctgcgcggtc agggatttgt agcgttcggc ggtttccgcc
     2941 tgtttctcca gcttttccac ctgacgcgcc aattcgttct gcaaatcgcc caaacgctgc
     3001 aaatgctcgc gcgtgtcttt cagacggcct tccgtctcct tgcggcgttc cttatatttg
     3061 gacacacctg ccgcctcctc gatataggcg cgcaattcct ccggccgcgc ttcgatgatg
     3121 cgcgaaatca tcccctgctc gataacggca taaccgcgcg cgcccacgcc cgtacccaaa
     3181 aataaatcgg taatgtcgcg gcggcgcacg gtctgattat tgatgaaata agtcgattcg
     3241 ccctgccgcg tcagctgccg cttgatgctc acctcggcat actgccccca cgcgccctgc
     3301 aaactgtggt cgctgttgtc aaacaccagc tccaccgaag ctcttggcgc aggacggcgc
     3361 gttgccgcac cgttaaaaat cacgtcctgc atactctcgc cgcgaagctg cttcgccgaa
     3421 gcctcgccca acacccagcg caccgcgtca atcacattcg acttgccgca gccgttgggc
     3481 ccgataaccg cgacaagctg ccccggcaca tgaattgtgg tcgggtcggt aaaagatttg
     3541 aagccggaga gtttgatatg ggtcaggcgc ataatggtcg gaaaaaataa aaaagaagcg
     3601 tattttaacg gaaatcccgc cgcaccaccc catatcttgc cggcaaaacc ttaccgcatc
     3661 ccgcaccctc gatgccgtct gaagccttca gacggcattt ttaacgcgcc cgaaccccga
     3721 ttccgccaac gcccgatgct tggcgcggca tttgccgtat tgccccgccg ccgggcgcgt
     3781 tataatccgc cacgacatcc gcccgatttg gaaacctgcc tatgaaaccc gcctatttca
     3841 tctccgacct gcatttgagc gaaaagcacc ccgaactgac cgcgctgttg ctgcgttttt
     3901 tacgttcttc cgccgccggg caggcgcggg cggtttacat tttgggcgat ttgtttgatt
     3961 tttgggtggg cgatgacgaa gtttccgagt tgaatacttc ggttgcgcgt gaaatcagga
     4021 aattgtccga caaaggcgtt gccgtgttct tcgtcagggg caaccgcgac ttcctgattg
     4081 gtcaggattt ttgccggcag gcaggcatga cgctgctgcc ggattactcg gttttggact
     4141 tgttcggctg caaaaccctc atctgccacg gcgacactct gtgtacggat gacagggcat
     4201 accaacgttt ccgcaaaatc gtgcatcgga agcggctgca aaaactgttc ctgatgctgc
     4261 ccctgaagtg gcgcacgcgc cttgccgcca aaatcaggcg cgtcagcaaa atggaaaaac
     4321 aggtcaagcc cgccgatatt atggatgtca atgccgcctt taccgcgcgg caggttcgcg
     4381 cctttaacgc ggaaaggctg atacacggac acacccaccg cgagcatatc catcacgaaa
     4441 acggctttac ccgcatcgtt ttgggcgact ggcataacga ctatgcttca atcctccgcg
     4501 tggacgggga cggcgcggta ttcgtgccgc tggaaaaatg ctgaaaatgc cgtctgaagc
     4561 ctttcgggcg gcttttttta cacgcccctt tcccacactc cctccgccgc atcatcacca
     4621 tccttaaccc gcattaatgg gcgttatcga taaaatgctt gaccgattac ataagattac
     4681 gtaaagtgtg caaacgcata acaattggtc ttaccaattt atcttttaac caaaatatcg
     4741 ggtgtacggg atttgaacgt ctttccaaac ctcgacgcgc cttatgatgc aaatgcctaa
     4801 aaaggattcg ttatggcact tttcctcagc atattcccca tcgtcctgct gatttggctg
     4861 atggtgaaaa aaaacagtat gccctcctac gtcgcgctgc cgattaccgc agtgctgatt
     4921 tacgccatca aacttttcta cttcggcgat gcgggcatgc tgctcaacgc caccgccgct
     4981 tccggcctcg tcaaaacgct cacgccgatt accgtgattt tcggcgcgat tatgttcaac
     5041 cgtatgatgg aaaccacggg ctgcattgat gtcatccgca aatggctggc gaccatcagc
     5101 cccaaccccg tagcgcaact gatgattatc ggctgggctt ttgcctttat gattgaaggc
     5161 gcatccggct tcggcacgcc tgccgcgatt gccgcgccga ttctgatgag cttgggcttc
     5221 aacccgttga aagtggcgat tttcactttg gtgatgaact ccgtccccgt ctctttcggc
     5281 gcggtcggta cgccgacctg gttcggtttc gcaccgctga acctgagtgc cgaagacatc
     5341 ctcgccatcg gcaggcagac cggcgtaatg cacttcttcg caggtttcgt catccccgtc
     5401 atcggcttgg gcttcatcgt accttggtct gaaatccgca aaaacttggg cttcgtcgcc
     5461 attgccgtct tctcctgcac cattccttat gtcgcattgg cgatggtcaa cgaagaattc
     5521 ccgtcgctcg tcgccggcgc aatcggcctg atggtgtccg tattcgccgc caaccaaggc
     5581 tggggcttga gcaaagacca cgccaaagac ccgaatgccg aaaaagtgcc gttcgcccaa
     5641 gtcgccaaag cactcgcccc tttgggtatg ctgatcggca tgctggtggt tacgcgcatc
     5701 aaacagctcg gcatcaaagg cattttgacc agcaaagaag aatggttcag cttccaactg
     5761 ccgtttgatt tgtccaaaat caccgtcagc gactccctga cgattacctt cggcaatatt
     5821 ttcggacaag atgtcagcgc gtcttaccaa acgctgtacg tcccggcttg gattccgttt
     5881 gtgctgaccg tttggatttg catcctgctg tataaaacca aattcaaaga tgcctggacg
     5941 atttattccg taactttcaa tcaaaccaaa aaaccgctgc ttgccctgat gggcgcgctg
     6001 attatggttc agctgatgct ggtcggcggc gacaattcga tggtgaaaat catcggtaag
     6061 gaatttgccg caatggcggg cgaacactgg gtttatttct cgccgtatct gggcgcgatc
     6121 ggtgcgttct tctccggctc caacaccgtg tccaacctga ctttcggccc gattcagcag
     6181 caaatcgcct tggataccgg cctgtccgtt accctgattc tggcgttgca gtccgtcggc
     6241 ggcgcgatgg gcaatatggt gtgcctcaac aacatcatcg ccgtatgtac cgtattggat
     6301 gtgaaaaatt ccgaaggtgc gattatcaag aaaaccgtta tcccgatggc gatttacggc
     6361 gtgattgccg tcgtcgcggc aatgattttc ttcctctagg cgaaacgcca ccatccatag
     6421 cggcagcacg cggggaacgg aaaccgccgt tccccgtctg ggcggcgcgt cgggcagaat
     6481 cccggtgccg gaacagcccg ccccgccaaa caaatgccgt ctgaaaccgg aaaaggcttc
     6541 agacggcatt tttccgccgt ttgcattcag gcgtaatgat gatgcggcat cttgccgtca
     6601 aggcggtagc gcgtgccgca atacgggcag gcaacgctgc ccgattctcc ttcgcacaaa
     6661 ggcaaaaaca ctctcggatg cccgttccac tgctcgttgt cgggtcccga gcaatacagc
     6721 ggcagatttt ccggcaacac ggaaatttcc tgcagattca gattgtccat ttgattttcc
     6781 tttgcgtggt tggcgtgcgc ccattttacg ccatcggcag gctaaaggat attttcggcg
     6841 caaagccgca atccgctata atccccactt ttcagacggc ataccatgac tgcgcttacc
     6901 cttccggaag acatccgcca acaagagcca tccgccctgc tctatcccct cgtttccgcc
     6961 tacctcgaac acaccgccca aaccggcgac gaatccctct cctgcctgtc cgacgaccag
     7021 cacacgctga ccgcattctg ctacctcgac agccaagtcg aagaaggcgg cttcgtgcaa
     7081 ctcatcgcct ccggttacgg cgaatatatt ttccgcaacc cgcttgccga cagcctgcgc
     7141 cgctggaaaa tcaaagccgt gccgaaagtc ttggacaaag ccaaagccct ctacgaacaa
     7201 cacggcaaaa ccatcgaaac gctcgccgac ggaggcgcag acatcgaatc cctgcgcaaa
     7261 cagttccccg actttgaaga atgggacggc gcatactacg aagccgccga acaagacctg
     7321 cccctgcttg cagaacacat acagtcaaac tgggaaacct tcgcccatat cgggcaggcg
     7381 tgattgcgtc tgtttccagc ccgtgtaaaa cagcgtaaaa tcggcaaacc cgaatgacct
     7441 tccgtcccca tcaaggagca agctatgttc ttcaagcaca tcgaagccgc ccccgccgat
     7501 ccgattctcg gtttgggcga agcattcaaa gccgaaaccc gccccgaaaa agtcaacctc
     7561 ggcatcggcg tttataaaga cgcatccggc gcgacacccc tcgtcaaagc cgtcaaagaa
     7621 gccgaaaaac gcctgttgga aagcgaaacc accaaaaact acctcaccat cgacggcgtt
     7681 gccgactaca acgcgcaaac ccaaatcctg ctgttcggca aagaccacga aatcatcgcc
     7741 agccgtcgcg ccaaaacagc gcaaagcctc ggcggtacgg gcgcattgcg tattgcggcc
     7801 gagtttgcca aacgccagtt gaacgcgcaa accatctgga tttccaatcc gacttggccc
     7861 aaccacaacg ccatcgccaa agcggtcggt atccaagaca aaccttatcg ttactatgat
     7921 gccgccaaac acggtttgga ttgggacggc atgattgagg acttgagcca agcgcaaaaa
     7981 ggcgacatcg tcctgctgca cggctgctgc cacaatccta ccggcatcga ccctacgccc
     8041 gaacaatggg aaactttggc aaaactttct gccgaaaaag gctggttgcc gctgtttgac
     8101 tttgcctacc aaggcttcgg caacggtctg gaagaagatg cctacggctt gcgcgtgttc
     8161 ttgaaacaca atacagaatt gctgattgcc agctcttatt ccaaaaactt cggtatgtac
     8221 aacgagcgcg tgggcgcgtt cactttggtg gccgaagatg aagcaaccgc cgcccgcgcc
     8281 cacagccaag tcaaaaccat catccgtacc ttgtattcca atccggcttc acacggcgcg
     8341 aacactattg cgctggtgtt gaaaaatgat gatttgaaag cacaatggat tgccgaactc
     8401 gatgaaatgc gcggccgcat caaagccatg cgccaaaaat ttgtcgagtt gctcaaagcc
     8461 aaaggtgcaa gccaagactt tgatttcatt atcgaacaaa acggtatgtt ctctttcagc
     8521 ggtctgactc ccgaacaagt tgaccgtttg aaaaacgagt ttgccattta tgccgtccgc
     8581 tccggccgca tcaacgttgc cggcattacc gacgacaaca tcgattatct gtgcgaaagc
     8641 atcgtgaaag tactgtaaaa agcacagcca tatgaaaatg ccgtctgaac cttaaccagt
     8701 tcagacggca tctgtttttt gttaaaaaac aataaactat aacaatttca aacaagctaa
     8761 aaacatctat aaaatcaacc caatatgatg aactcaaata aaaatacgaa tatcatcatt
     8821 ctcaaattca aaatttgaac gccacagtat tatccgaagc cacaaaaacc tttc
//
LOCUS       DAXIFS010000072         8592 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.072, whole genome shotgun sequence.
ACCESSION   DAXIFS010000072 DAXIFS010000000
VERSION     DAXIFS010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8592
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.072"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(280..3132)
                     /gene="gcvP"
                     /locus_tag="ACFOCA_001157"
     CDS             complement(280..3132)
                     /gene="gcvP"
                     /locus_tag="ACFOCA_001157"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HFC6987880.1"
                     /translation="MKLSELFNPNEFAARHLSFGDEAALLAAVGEKSMDEFVGNTVPQ
                     SIRMPSELDLPDALTEADALAKLKGIASKNVINKSYIGLGYYPTRVPNVILRNVLENP
                     GWYTAYTPYQAEIAQGRLEALLNFQQVCIDLTGFPVAGASLLDEATAAAEAMAMAHRV
                     GKVKSERFFVDARVYPQTLDVMKTRAKYFGFELVVSDFAKADDGEYFGALFQYVGKDG
                     DVQDLQDVIGRLKAKGTIVAVAADIMSLVLLKSPAELGADIALGNTQRFGVPMGFGGP
                     HAAYFAFKDAFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQAL
                     LANLAGMYAVYHGPEGVKRIANRIHALASAFADALVSDGINVVHKVFFDTVTVDFGNK
                     EKADQVFAAALESGYNLRRVNDTQVAAAFHETSACEDLVDLYRAFTGKDTFAFADDVK
                     GRLNAELLRQDDILQHPVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNA
                     TAEMLPITWAEFSDIHPYAPEAQTAGYRELLADMENSLKSITGFDAISFQPNSGAQGE
                     YSGMLAIRRYQEAQGEAQRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDD
                     LKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIVHENGGQVYMDGANLNAQIGIM
                     QPAEVGADVLHMNLHKTFCIPHGGGGPGMGPIGLKAHLAPFAPGHALTDTHSASADQT
                     AVAAAAFGSASILPITWMYLTMMGKQGMEQATRWALLNANYVAKRLSEDYPILYTGKN
                     GRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKA
                     ELDRFIAALKQIKQEVLKVGRGEWPKEDNPLVNAPHTASDVTGEWAHPYSREEAVFPL
                     PFVREHKFWPSVNRVDDVYGDRNLVCSCPPMENYED"
     gene            complement(3163..3522)
                     /locus_tag="ACFOCA_001158"
     CDS             complement(3163..3522)
                     /locus_tag="ACFOCA_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987881.1"
                     /translation="MTDRPSLLWIKPGQAEIMEYCEPEEASDPYATYRRASLMAMLPL
                     FVVILVLLNIVFPLLAHPLAWLVPAGFMVLVGGFPLSLPLVALLVLTCCILAHCPPLS
                     RLLCCPCPNHPMSKNSA"
     gene            3521..3700
                     /locus_tag="ACFOCA_001159"
     CDS             3521..3700
                     /locus_tag="ACFOCA_001159"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HFC6987882.1"
                     /translation="MPSEPAGRLFQKTPYRRNFMRLYGVGFALQTAYASRSSLVFQSV
                     HDYINNLGADKPLFI"
     gene            complement(3693..4334)
                     /locus_tag="ACFOCA_001160"
     CDS             complement(3693..4334)
                     /locus_tag="ACFOCA_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HFC6987883.1"
                     /translation="MPSEKPMNRRTFLLGAGALLLTACGRKSARTHAKIPEGSTVLAL
                     GDSLTFGYGANPGESYPAQLQKLTGWNIVNGGVSGDTSAQALSRLPALLARKPKLVIV
                     GIGGNDFLRKVPKEQTRANIAKIIETVQKENIPAVLVGVPHITLGALFGHLSDHPLYE
                     DLSEEYGIPLFGGAWAEILGDNNLKSDQIHANGKGYRKFAEDLNQFLRKQGFR"
     gene            complement(4324..4875)
                     /locus_tag="ACFOCA_001161"
     CDS             complement(4324..4875)
                     /locus_tag="ACFOCA_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HFC6987884.1"
                     /translation="MNYCEFAASLPENTDNPNKHYHDTQYGFPIEDDNELFERLVLEI
                     NQAGLNWTLMLKKRQAFQTAFEGFDIDTVAAFDDTDRERLLADAGIVRNRLKIDAAIF
                     NARQIQALQQEYGSFKNWLDTHHPRSKDEWVKLFKKHFKFVGGEIVGEFLMSTGYLKG
                     AHAESCPVYRETLKYHPKWLDAI"
     gene            complement(4879..5397)
                     /locus_tag="ACFOCA_001162"
     CDS             complement(4879..5397)
                     /locus_tag="ACFOCA_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HFC6987885.1"
                     /translation="MRLFPIAAALSLAACGTVQSTQYFVLPDSRYIRPATQGGETAVE
                     VRLAEPLKRGGLVYQTDPYRLNTAQNHVWADTLDDMLEAALSNAFNRLDSTRIFIPAS
                     RSGSTEKWTVYIDAFQGSYTGKTLISGYAVLPDGTNRPFHIETEQQGDGYAAMTAALE
                     QGLKQAAQQMVE"
     gene            complement(5397..7037)
                     /gene="pqiB"
                     /locus_tag="ACFOCA_001163"
     CDS             complement(5397..7037)
                     /gene="pqiB"
                     /locus_tag="ACFOCA_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HFC6987886.1"
                     /translation="MTDNSPPPNGHAQAHVRKNNTFLSAVWLVPLIALIAGGWLWIKE
                     IRNRGPVVTLLMDSAEGIEVNNTVIKVLSIDVGRVTRIKLRDDQKGVEVTAQLNADVS
                     GLIRSDTQFWVVKPRIDQSGVTGLGTLLSGSYIAFTPGKSDEAKDVFQVQDIPPVTAI
                     GQSGLRLNLIGKNDRILNVNSPVLYENFMVGQVESAHFDPSDQSVHYTIFIQSPNDKL
                     IHSASRFWLESGINIETTGSGIKLNSAPLPALLSGAISFDSPKTKNSKNVKSEDSFTL
                     YDSRSEVANLPDDRSLYYTAFFKQSVRGLTVGSPVEYKGLNVGVVSDVPYFDRNDSLH
                     LFENGWIPVRIRIEPSRLEINADEQSKEHWKQQFQTALNKGLTATISSNNLLTGSKMI
                     ELNDQPSSSPKLRPHTVYADDTVIATQGGGLDDLQVKLADLLDKFGKLPLDKTVSGLN
                     ASLAELKSTLKSINTLSNNPQTQNIPNELNQTLKELRTTLQGVSPQSPIYGDVQNTLQ
                     SLDKTLKDVQPVINTLKEKPNALIFNSSSKDPIPKGSR"
     gene            complement(7030..8364)
                     /locus_tag="ACFOCA_001164"
     CDS             complement(7030..8364)
                     /locus_tag="ACFOCA_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqiA/YebS family transporter subunit"
                     /protein_id="HFC6987887.1"
                     /translation="MPPLIFATFPMKPFAENIPHSLRGNCRDEALPPHTVDCPECGCR
                     ADVPRLDRGEAAFCPRCGYKLFRVGRHPFSAPPAYAAASLILMAFAYGMTYIEVGIPG
                     AASVLSLPEMMRLMVFQDYGFLAEVMFVLTFGAPVLFLLLCLYVYAALIRKRVYPALR
                     LATRVMVRLRQAMMVDVFFVSTLVAYIKLSSVAEVRFGSAFYLMFALSVMLIRTSVSV
                     PQHWVYFQIGRLTGDNAVQTASEGKTCCSRCLYFRDSAESPCGVCGAELYRRRPKSLS
                     ISSAFLTAAVILYFPANILPIMISSNPAATEVNTILNGIAYMWDEGDRLIAAVIFSAS
                     ILVPVLKIAAMSVLIASARFALPTGAKKLSHLYRITEAVGRWSMIDIFVIIILMCSFH
                     TYAARVIPGSAAVYFCLVVILTMLSAYYFDPRLLWDKRASDGIAFNETEKHD"
     gene            complement(8393..>8592)
                     /locus_tag="ACFOCA_001165"
     CDS             complement(8393..>8592)
                     /locus_tag="ACFOCA_001165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987888.1"
                     /translation="KRNLLSHIFGKNIICVMFLSRYFTILYRIGILSNGFGSRRTAAR
                     KNIFAGRQGFVHTAEPAGFAS"
BASE COUNT         1924 a         2198 c         2431 g         2039 t
ORIGIN      
        1 gaggcaacgc tgtactggtt tttgttaatc cactatattt gtttgtccgt gtggaaatga
       61 catcaaaggg tgtgaatagg cttttcatct ttgaaatctg tttgcacgat cggatgaata
      121 aaaagtagga tgataaaaaa gctgatgtat ggatactggt ttaactcatt tgttttaaag
      181 ttatagtcga gatacgtgta ttggtgcaac cagtctgccg ttgacgaaaa tgccgtctga
      241 aaatgtttca gacggcattt gtcttcgggg tttcaacggt cagtcttcat aattttccat
      301 cggtgggcag ctgcacacga gattgcggtc gccgtacacg tcgtccacac ggttgacgct
      361 cggccagaat ttgtgttcgc ggacgaatgg caacggaaag acggcttctt cacgggagta
      421 cggatgcgcc cattcgccgg ttacatcgga tgcggtatgc ggagcgttga ccagcggatt
      481 gtcctctttc ggccattcgc cgcgcccgac tttcagcact tcctgtttga tttgtttcag
      541 ggcggcgatg aagcggtcga gttcggcttt gctttcgctc tcggtcggct cgatcatcag
      601 cgtaccggca acggggaagg aaaccgtcgg ggcgtggaag ccgtagtcca tcaggcgttt
      661 ggcgatgtcg gtttcagtga tgccgctttc ggctttgagc ggacgcaaat cgacgataca
      721 ttcatgcgcg acgcggccgt ttttgcctgt atacagaatc ggatagtctt cgctcaggcg
      781 tttggcaacg tagttggcgt tgagcaatgc ccagcgtgtc gcctgttcca tgccttgttt
      841 gcccatcatg gtcaggtaca tccaagtaat cggcagtatg gacgcagaac cgaaggccgc
      901 agcagcaacg gcggtttggt cggcactggc gctgtgggtg tcggtcaaag cgtgtcccgg
      961 tgcgaacgga gccagatggg ctttcaagcc aatcggaccc atgcccggac cgccgccgcc
     1021 gtgagggata cagaaggttt tgtgcaggtt catgtgcaac acgtccgcgc cgacttcggc
     1081 aggctgcatg atgccgattt gggcgttgag gttggcgccg tccatgtaaa cctgtccgcc
     1141 gttttcatgg acgatgcggc agatgtcgcg gatgccttct tcgtacacgc cgtgggtgga
     1201 cggataggta atcatgatgg cggacaaagc gtcgcggtgt tgctcggctt tggctttcaa
     1261 atcgtcgatg ttgacgttgc cgtgttcgtc ggtatcgacg acgacgactt tcaaaccgag
     1321 catggcggcg gtggcggggt tggtgccgtg ggcggatttg ggaatcagac agatgttgcg
     1381 ctgcgcttcg ccttgcgctt cctgatagcg gcggatggca agcataccgc tgtattcgcc
     1441 ctgcgcgccg gagttgggct ggaaggaaat tgcatcaaaa ccggtgatgg atttcaggct
     1501 gttttccata tcggcgagca attcgcggta gccggcggtt tgcgcttcag gagcgtaagg
     1561 atggatgtcg gagaactccg cccaagtaat cggcaacatt tccgcagtcg cgttgagttt
     1621 catggtgcag ctgcccaatg aaatcatgct gcggttcatc gccaagtcgc ggtcttcgag
     1681 ttttttcagg tagcgcagca tttcgtgttc ggtgtggtaa cggttgaaca cgggatgttg
     1741 cagaatgtcg tcttgacgca gcagttcggc gttcagacgg cctttgacat catcggcaaa
     1801 tgcgaacgta tccttgccgg taaacgcgcg gtacaaatca accaaatctt cgcatgccga
     1861 tgtttcgtgg aatgcagccg caacttgagt atcgttaacg cggcgcaggt tatagcccga
     1921 ttccaaagca gcggcaaaca cttggtctgc tttctctttg ttgccgaaat cgacggtaac
     1981 ggtatcgaag aagactttgt gaaccacatt aatgccgtct gaaaccagcg catcggcaaa
     2041 agcagaagcc agcgcgtgaa tgcggttggc gatgcgtttc acgccttcag ggccgtggta
     2101 aacggcatac atacccgcca aattcgccag caatgcttgt gcggtacaaa tattggacgt
     2161 ggctttttcg cggcggatgt gttgctcgcg ggtggacaac gccatgcgca aggcaggttt
     2221 gcctgatgcg tctttggata cgccgatgat gcggccaggg gcggaacgtt tgaacgcgtc
     2281 tttaaacgcg aaataagcgg cgtgcggccc gccgaagccc ataggcacgc cgaaacgttg
     2341 ggtgttgccc aaagcaatat ccgctcccaa ttcggcaggt gatttcagta aaaccaagct
     2401 catgatgtcg gcggcaacag caacgatcgt gccttttgct ttcagacgac cgataacatc
     2461 ctgcaagtct tgcacatcgc cgtctttgcc gacgtattgg aacagcgcgc cgaagtattc
     2521 gccgtcatcc gctttggcaa aatcgctgac caccagctcg aagccgaaat atttggcgcg
     2581 ggttttcatc acgtccaaag tttgcggata cacgcgcgca tccacaaaga aacgctcgga
     2641 tttcaccttg cccacgcggt gcgccatcgc catcgcttca gccgcagcag ttgcctcgtc
     2701 cagcaaagac gcgcccgcca cagggaaacc ggtcaaatcg atacacactt gttggaagtt
     2761 taacaacgct tccaaacgac cctgggcaat ttccgcctga tacggcgtgt aggcggtgta
     2821 ccaacccgga ttttccaaca cgttgcgcaa aatcacgttc ggcacgcggg tcgggtaata
     2881 gcccaaaccg atataggact tgttgatcac gtttttcgac gcaatgcctt tcaatttcgc
     2941 caacgcgtcc gcttcggtca gggcatcggg caaatcgagt tcggacggca tacggatgct
     3001 ttgcggcacg gtattgccga caaattcgtc catgcttttc tcgccgacag cggcaagcaa
     3061 cgccgcttcg tcgccgaaac tcaaatggcg cgcggcaaat tcgttcgggt tgaacaattc
     3121 agatagtttc atttctactc cttcgggttt gtagggctgc catcaggcag aatttttaga
     3181 catcggatga ttcgggcaag ggcagcacaa aagacgggat aatggcggac aatgcgccag
     3241 aatgcagcag gtcaggacaa gcagcgccac aagcggcagc gataagggaa agccgccgac
     3301 caaaaccatg aaacctgcag gcaccagcca agccaaggga tgcgccagaa gcggaaaaac
     3361 aatattgagc agaaccaaaa tcacaacaaa cagcggcagc atcgccatca ggctggcacg
     3421 cctgtatgtt gcgtacgggt cggatgcttc ttcaggttcg caatattcca tgatttcagc
     3481 ctgtcctggc tttatccaca gcaggctcgg acggtcggtc atgccgtccg aaccggcagg
     3541 ccgtcttttt caaaaaacgc cataccgccg caacttcatg cggctgtatg gcgtaggttt
     3601 tgcacttcag acggcatatg cgtcccgaag cagtttggtg ttccagtcgg ttcatgatta
     3661 tataaacaac ttgggtgcgg ataaaccttt gtttatctaa acccctgttt tctcaaaaat
     3721 tgattcaaat cttcggcaaa tttccgatag cctttgccgt tggcgtggat ttggtcggat
     3781 ttcagattat tatcgcccaa aatttccgcc cacgcgccgc cgaacagcgg aatgccgtat
     3841 tcctcggaca aatcctcata cagcggatga tcgctcaaat gcccgaacaa cgcgcccagt
     3901 gtgatgtgcg gcacgccgac gaggacggcg gggatgtttt ccttctgcac ggtttcgatg
     3961 attttcgcga tattggcgcg ggtctgctcc ttgggaactt tgcgcagaaa gtcgttgccg
     4021 cctatgccga caatcacaag cttgggtttg cgtgccaaca gcgcgggcag gcgcgacagg
     4081 gcttgggcgg atgtatcgcc cgatacgccg ccgttgacaa tattccaacc cgtcagtttt
     4141 tgcagttgcg cggggtagga ttcgccaggg tttgcgccgt agccgaaggt aagcgaatcg
     4201 cccaaggcaa gtacggtgct tccttcggga attttggcgt gggttcgggc ggattttctg
     4261 ccgcaggcgg taaggagcaa cgcgcctgcg ccgaggagga aggttcttct gttcattggt
     4321 ttttcagatg gcatcgagcc atttcgggtg gtatttcagg gtttcacggt aaaccggaca
     4381 gctttcggcg tgcgcgcctt tgaggtagcc ggtactcatc agaaattcgc cgacgatttc
     4441 gccgccgacg aatttgaaat gttttttaaa gagtttaacc cattcgtctt tgcttcgcgg
     4501 atggtgcgtg tcgagccagt tcttgaacga gccgtattct tgttgcaacg cttggatttg
     4561 ccgtgcattg aaaatggcgg catcgatttt caggcggttg cggacaatgc ccgcgtcggc
     4621 aagcaggcgt tcgcggtcgg tgtcgtcgaa ggcggcaacc gtatcgatgt cgaaaccttc
     4681 aaatgccgtc tgaaacgcct gccgcttctt cagcatcagc gtccagttta atcctgcctg
     4741 attgatttcc aacaccagcc gctcaaacaa ttcattgtcg tcctcaatcg gaaaaccgta
     4801 ttgcgtgtcg tggtaatgtt tgttcgggtt atcggtgttt tcgggaagtg aggcggcaaa
     4861 ttcgcaatag ttcacgtttt actcgaccat ctgttgcgcc gcctgtttca gtccctgttc
     4921 gagtgcggcg gtcatcgcgg cgtagccgtc accctgctgt tcggtttcga tatggaaggg
     4981 tctgttcgta ccgtcgggta ggacggcgta gccgctgatg agggttttgc ccgtgtagct
     5041 gccttggaat gcgtcaatat agaccgtcca tttttcggta ctgccgctgc gtgaggcagg
     5101 aataaagatg cgtgtgctgt ccaaacggtt gaatgcattg ctcaacgccg cttcgagcat
     5161 atcgtccaag gtgtccgccc aaacgtggtt ttgtgcggtg ttgaggcggt aggggtcggt
     5221 ttgatagacc agtccgccgc gtttgagcgg ttcggcaaga cggacttcga cggcagtttc
     5281 gccgccttgc gttgcaggac ggatgtagcg gctgtcgggc aacacgaaat attgtgtgct
     5341 ttgcacagta ccgcaggcgg caagcgacag ggcggcggca atcgggaaaa ggcgcattat
     5401 cggcttcctt tcgggatagg gtctttgctg ctgctgttga aaatcagcgc gttgggtttt
     5461 tctttcaaag tgttaatgac gggttgaacg tcttttaagg ttttgtccaa actttgcagc
     5521 gtattttgta cgtcgccgta gataggcgat tgcggcgata cgccttgcag ggttgtgcgc
     5581 aactctttca gggtttggtt caactcgttc ggaatgtttt gcgtttgcgg attattgctt
     5641 agcgtgttaa tggatttcag cgtggatttg agttcggcga gcgaagcgtt taaacctgaa
     5701 acggttttgt ctaaaggcag tttgccgaat ttgtccagca aatccgccaa tttgacctgt
     5761 aagtcgtcca aaccgccgcc ttgtgtagcg atgacggtat cgtctgcata aacggtatgc
     5821 ggtcgcagct tgggcgaaga cgaaggctga tcgttcaact caatcatttt gctgccggtc
     5881 agcaggttgt tgctggagat ggtggcggtc aggcctttgt ttaaagccgt ctgaaattgt
     5941 tgtttccaat gctctttgct ttgttcgtcg gcattgattt ccaaacggga aggctcgatg
     6001 cggatgcgta cgggaatcca gccgttttca aataaatgca ggctgtcgtt gcggtcaaaa
     6061 taagggacat cggaaaccac gccgacattc agccctttgt actcgacggg cgaaccgacg
     6121 gtcaggccgc gcacggattg tttgaaaaac gcggtgtagt acagcgagcg gtcgtcaggc
     6181 aggttggcga cttcgctgcg gctgtcgtaa agcgtgaagc tgtcttcgct tttgacgttt
     6241 ttactgtttt tggttttcgg cgaatcaaat gaaatcgcgc ccgacagcag ggcaggcaga
     6301 ggggcggaat tgagtttgat gccgctgcct gtggtttcga tattgatgcc gctttccagc
     6361 caaaaacggc tggcggaatg aatcagtttg tcgttggggc tttggatgaa gatggtgtaa
     6421 tgcacgcttt ggtcggacgg gtcgaaatgc gcgctttcga cttgcccgac cataaagttt
     6481 tcatacaaaa cagggctgtt gacgttgagg atgcggtcgt ttttaccaat caaattcaag
     6541 cgcagcccgc tttgcccgat ggcggtaacg ggcggaatgt cctgcacttg gaacacgtct
     6601 tttgcctcgt cgcttttgcc gggtgtaaaa gcgatgtacg aacccgaaag cagcgtaccc
     6661 aaaccggtta cgccgctttg gtcgatacgc ggcttgacca cccaaaactg ggtatcgctg
     6721 cggatgaggc cggatacgtc cgcattgagt tgggcggtta cttccacgcc tttttggtcg
     6781 tcgcgcagtt tgattcgggt aacgcgtccg acatcgatgc tcaatacttt gatgaccgta
     6841 ttgttgacct caatgccttc cgcgctgtcc atcaagagcg taaccacagg ccccctgttg
     6901 cggatttcct taatccacag ccagccgccg gcaatcagcg cgatcagcgg aaccagccag
     6961 acggcagaga ggaaggtgtt gtttttgcgg acgtgtgctt gggcgtgtcc gtttggagga
     7021 gggctgttgt cagtcatgtt tttccgtttc gttgaaagca atgccgtctg aagcgcgttt
     7081 gtcccaaagc aggcgcgggt cgaaataata ggcggacagc atcgtcagaa tcacgaccag
     7141 gcagaaatag actgccgcac tgcccggaat gacgcgcgcg gcataagtgt ggaacgaaca
     7201 cattaaaata ataatcacaa aaatatcaat catcgaccag cggccgaccg cttcggtgat
     7261 gcggtagagg tgtgacaatt tctttgcgcc tgtcggcaaa gcgaagcggg cggacgcaat
     7321 taaaaccgac attgccgcaa tcttcagcac cggcaccaaa atactcgcgc tgaaaataac
     7381 cgccgcaatc agcctgtcgc cctcgtccca catataagcg atgccgttaa ggatggtatt
     7441 gacctccgtg gcggcaggat tggacgaaat cataatcggc aggatattgg cagggaaata
     7501 caaaataacc gccgccgtca gaaacgccga cgaaatactc agacttttcg gccgtcggcg
     7561 gtacagttcc gcgccgcaca caccgcaggg ggattcggca ctgtcgcgga aatacaggca
     7621 gcggctgcaa caggttttgc cttccgatgc cgtctgaacc gcattatccc ccgtcagccg
     7681 cccgatttga aaatacaccc aatgctgggg aacggatacc gaagtccgaa tcagcataac
     7741 cgacagcgcg aacatcagat aaaacgccga cccgaagcga acctctgcca cagacgagag
     7801 cttgatatac gccaccagcg tggaaacaaa aaacacatcc accatcatcg cctgcctcaa
     7861 gcgcaccatc acacgcgttg ccaaacgcag cgcaggatac acccgtttcc gtatcagcgc
     7921 ggcatagaca tacaggcaca gcagcagaaa cagaaccggc gcgccgaagg tcagcacaaa
     7981 catcacttcg gccaaaaaac cataatcctg aaacaccatc aggcgcatca tctcgggcag
     8041 cgaaaggacg gatgccgcac ccggtatccc gacctcgata tacgtcatac cgtaagcaaa
     8101 cgccatcaaa atcagcgaag ccgccgcata agcgggcggg gcggaaaaag gatgcctgcc
     8161 caccctgaag agcttatagc cgcagcgcgg gcagaacgcc gcctcccccc tgtccaaccg
     8221 aggcacatcc gcgcggcagc cgcattccgg gcaatctacc gtatgcggcg gtagggcttc
     8281 gtcgcggcag ttgccgcgaa ggctgtgggg gatattttcg gcaaacggct tcatcgggaa
     8341 agtggcaaat ataagtggcg gcattataaa ggaaaaaagg cgatacaccc aatcaggatg
     8401 caaaaccggc aggttcggca gtatgaacaa acccttgtcg tccggcaaaa atattttttc
     8461 gagcggctgt ccgccgactg ccgaacccat ttgataaaat cccgattctg taaagaatag
     8521 taaaatacct gcttaaaaac atcacgcaaa tgatattttt tccaaaaata tgtgataata
     8581 aatttcgttt at
//
LOCUS       DAXIFS010000073         8521 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.073, whole genome shotgun sequence.
ACCESSION   DAXIFS010000073 DAXIFS010000000
VERSION     DAXIFS010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8521
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.073"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(260..928)
                     /locus_tag="ACFOCA_001166"
     CDS             complement(260..928)
                     /locus_tag="ACFOCA_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6987889.1"
                     /translation="MKNLAIFDLDNTLINTDSDHAWPQYLIKKGLVDAAETEAQNEKF
                     YRDYQNGCLDIDAFLKFHLAPLARYSKEELAEFHREFMAEYIIPHISPMQRMLVQSHQ
                     MAGDETLVISSTNEFIITPVCHLFGITNIIGTQLESGSDGRYTGNYIGTPSLKEGKIT
                     RLNQWLAERGETLESYGKTYFYSDSKNDLPLLRLVDEPVAVNPDAELEEEAKEKGWPV
                     LNFK"
     gene            complement(925..1593)
                     /gene="hda"
                     /locus_tag="ACFOCA_001167"
     CDS             complement(925..1593)
                     /gene="hda"
                     /locus_tag="ACFOCA_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HFC6987890.1"
                     /translation="MNQLIFDFAAHDYPSFDKFLGTENAELVYVLRHKHGQFIYVWGE
                     EGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQAL
                     LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA
                     SMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQ
                     QETQ"
     gene            complement(1698..2288)
                     /locus_tag="ACFOCA_001168"
                     /pseudo
     CDS             complement(1698..2288)
                     /locus_tag="ACFOCA_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743106.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(2246..2461)
                     /locus_tag="ACFOCA_001169"
     CDS             complement(2246..2461)
                     /locus_tag="ACFOCA_001169"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6987891.1"
                     /translation="MRIGNDLFVKRVQRIPGKLLVTSENPRYAPFEIDLSNTQDDIAI
                     IGRVEWYGRSIPHRKTSLCSATTAKSC"
     gene            complement(2670..3569)
                     /locus_tag="ACFOCA_001170"
     CDS             complement(2670..3569)
                     /locus_tag="ACFOCA_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6C domain-containing protein"
                     /protein_id="HFC6987892.1"
                     /translation="MPALTVTWMIYTKYLVYQIYLVIFCGVFMERIDLALNLVEERSR
                     LGYSRKNFAEQTGCSAESLRLYESGQVNIPADFLLAAVQLGVDIQFVFTGIHSANLNA
                     VSDDLNKKLDDAIGKSNVENQINGNVSNAVIASSGSVVHQINTQNHVIRTRVDSKPGK
                     EHITLEQASKLQQLVKQVAAAEEIAKRSPKSIRAIWASLNAHCKVPSYKLIALSDYDK
                     AETYLRKWLGRLSNTATSKNNDPDWRKKKYAYIKLNVKQLELEDWLKSYLEKNFSVES
                     LTELSDEDLQKTYAAVSTKKRKK"
     gene            3613..3864
                     /locus_tag="ACFOCA_001171"
     CDS             3613..3864
                     /locus_tag="ACFOCA_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6987893.1"
                     /translation="MQANEIYKSLEEKNISARMLASALGVTNQSVSEVIRNGRGSKRI
                     AEAIAKVIQKDLVEVFPHYKKTDCRDKKIAELKEMLGVG"
     gene            3866..5845
                     /locus_tag="ACFOCA_001172"
     CDS             3866..5845
                     /locus_tag="ACFOCA_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFC6987894.1"
                     /translation="MEYMDLKSLLNFGLPNMPRTVIGLRKKAQRDGWQTRRRQGKGGG
                     VEYALPAEIRAAIMKRQSDELAEKMPKTLPQVRPGTAMSAQALAEAAKLLNEKQRSVA
                     DARCAVVAAVLGIKYQYDCSAKAAVAQFLGLLAEGKLDAVTLGNLEKANDRSRSAKVG
                     ERTLDGWISAYLKAENATERLVALAPKTTKAVKPIESYGWLPMFMQFHNIPSAPKLAH
                     SYRRFVQWAEAENMPVNDVPNLSMVRRVWDKLPLIMQERGRKTGAAYKSLLPYVKRDW
                     GALKPNDVWIGDGHSFKAKVAHPVHGRPFKPEVTVIIDGCTRFVVGFSVSLAESCVAV
                     SDALRIGVKHFGLPIIYYSDNGGGQTGKTIDHEITGITSRLGIRHETGIAGNPQGRGI
                     IERWWKDNLIEMARQYETFAGAGMDSSTKNLMYRKMESAFNALEKGKDLTEEQQKYLK
                     KLPGWSRFIADVVKCIDEYNNRPHGELPRHPDGGHYSPKAYREMRLEQDGIAPDMLSA
                     QELATMFMPQEVRKVQRGWLDLFNNSYFSVELAEYHKDEVRVSYDLSDASAVNVFDMD
                     GKFITKAQANGNTREAFPTARIDQLAEKRRKGKIKRAENAIKLANAEVNPALEQAAVW
                     DELGYLGGNVIEAEYAVLPKTGTDDGIFLFEADRS"
     gene            5881..6795
                     /locus_tag="ACFOCA_001173"
     CDS             5881..6795
                     /locus_tag="ACFOCA_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6987895.1"
                     /translation="MKQINQALQQKLAEFKEKSGMSQTQLARGIGTSPASVSMYLNGT
                     YAEKGGNYETIEPKIEAFLEMQDSKAKREELVLGFVSTKTTRRIVEAMRNAHEGGEIS
                     VIYGQAGLGKTQAVKNYCEKNPAAILIEANPSFTALVLMRKLATAAKVSAMGSLNDLF
                     ESVSDRLRDSGHLIVVDEAENLPLRALEIIRRLHDETGCGLVLSGMPRLVANLRGKYG
                     ELVQLHSRVAGALNLGDTMPDAELEQIARATLPEADDETIAELVKHSNGNTRRMSKLM
                     RGSVRVANKNGIRMQAGIVKKYSTLIIR"
     gene            6885..7151
                     /locus_tag="ACFOCA_001174"
     CDS             6885..7151
                     /locus_tag="ACFOCA_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987896.1"
                     /translation="MQVLKKVDWKMFVARSFWQCVPVGLTAGVWCFVAGMALHSCAKE
                     PEPVAKEPTKVEAMERQADLEVKVWEGQYESMSVEEKMKGIVYE"
     gene            7260..7433
                     /locus_tag="ACFOCA_001175"
     CDS             7260..7433
                     /locus_tag="ACFOCA_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987897.1"
                     /translation="MSFGRRNTDWQAWGQHRRRATARMAQKSREREIEEYQAQFEDKD
                     GKGRLKTEGNKDE"
     gene            7426..7593
                     /locus_tag="ACFOCA_001176"
     CDS             7426..7593
                     /locus_tag="ACFOCA_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987898.1"
                     /translation="MNEKDLIEWLEDRGELMVMKKDGEGFVIAARAPDGMWKTAEAET
                     LAQAITLWEEV"
     gene            7657..7884
                     /locus_tag="ACFOCA_001177"
     CDS             7657..7884
                     /locus_tag="ACFOCA_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987899.1"
                     /translation="MKVYVFKISNENGKLKIELPEIPMGKQIDEVDLIAGLTTEFIAS
                     MLRDAQKDRRKFVIDASNQLAAIQTYQKIFN"
     gene            7899..8417
                     /locus_tag="ACFOCA_001178"
     CDS             7899..8417
                     /locus_tag="ACFOCA_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0042262 - DNA protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HFC6987900.1"
                     /translation="MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDK
                     KAAIEEEYAAKAAPMCAEIMSLTERVAAYCEAHKDELTENGKTKTVDFTTGLIKWRIR
                     PPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGV
                     EDFVIEPSEQIL"
BASE COUNT         2190 a         1746 c         2473 g         2112 t
ORIGIN      
        1 aatctaattt gtcagcatct gttaatttat tgcaaaataa agtattgaat tatgtcgggt
       61 gcaaatgacg aaatataagt ttccgtgcgg acggatcaag attcccactt tcgtgggaat
      121 gacggtggaa agattgttgt ttttcccgat gaattcctgt gttttttgtt tttccggata
      181 aattcctgtg gctttgagtt ttttggattt cagcctcaat gccgtctgaa cgccgaattg
      241 ggcttcagac ggcattgcgt catttgaaat ttaaaaccgg ccagcctttt tctttggctt
      301 cttcttccag ctcggcatcg gggttgacgg cgacgggttc gtcgacgagg cgcagcagcg
      361 gcaggtcgtt tttggagtcg ctgtaaaaat aggttttgcc gtagctttcg agcgtttcgc
      421 cgcgttcggc gagccattgg ttcaggcggg tgattttgcc ttctttgagg ctgggcgtgc
      481 cgatgtaatt gccggtgtag cggccgtcgg aaccggattc gagttgtgtg ccgatgatgt
      541 tggtaatgcc gaaaaggtgg cagacggggg tgatgatgaa ctcgttggtt gaggaaatca
      601 caagggtttc gtcgcctgcc atttggtggc tctgcactag catacgctgc ataggcgaga
      661 tgtgggggat gatgtattcc gccataaatt cgcggtgaaa ttccgccagc tcttctttgc
      721 tgtaacgggc gagcggggcg aggtggaatt tgaggaatgc gtcgatgtcg aggcagccgt
      781 tttggtagtc gcggtagaat ttttcgtttt gcgcttcggt ttcggcagcg tcaaccaagc
      841 cttttttgat gaggtattgc ggccaggcgt ggtcggaatc ggtgttgatg agggtgttgt
      901 cgaggtcgaa gatggcgagg tttttcattg ggtttcctgt tgtttcaaaa gctggcgcaa
      961 aagcggcagg gtgatgcgtt tgcccatcgt gacggcgtag ttgtccagcg tgtcgagcat
     1021 catcatcagg ctgtccatat cgcgccgcca gtgtttgagc aggtattcga aaatttcgga
     1081 atcaacggtt acttggcgtg ccgccgccat actggcgagc gcgtcgattt tttcttggtc
     1141 ggtcaggggt ttgacttcgt aaacgaggca gtaagccata cgcgtccgca aatcttcgcg
     1201 gatgacgagc tgctggggcg tgtattccga accgagcagc aaaaagcctt tgccgctgtt
     1261 gcggaagcgg ttgaagatgg aaaaaagcag ggcttgttct tcgttgccca gcttttcgac
     1321 ttgatcgacg gcgaggtatt ccgcctcgaa cgcggcatcg gtcagcggca tggaggcggc
     1381 atcgatatag gcggcgtttt tgccggcttc gagcgcctgt gcgacccacg cctgcaaaag
     1441 atggcttttg cccgcgcctt cttcgcccca aacataaatg aattgtccgt gtttgtgtcg
     1501 gaggacatag accagttccg cgttttccgt gccgaggaat ttgtcgaaac tcggatagtc
     1561 gtgtgcggca aagtcgaaaa taagctggtt cacggttcgg cattccgagg ggtggtaaac
     1621 gggtttattg tacgttgttt tcgcgcgcct ttccaatttg aacgatgccg tctgaaaacg
     1681 gcttcagacg gcatcgttca gtcgcaggca acgttgccga cattgaggtg catattgtgg
     1741 aacgtgttga gcgtgcttcg gtgtccgatg ctgatgatga tgctgtcggg cagtttttgc
     1801 tttaaggcgc ggtagagtgc ggcttcggcc ggttcgtcca aggcggcggt ggcttcgtcg
     1861 agcaggacga ttttgggctt ggaaagcagg gcgcggacga aggcgacgcg ttgcagttcg
     1921 ccaggggaga gtttgtgctg ccagtcggct gttttgtcca atttgtcaat cagataaccc
     1981 aagcggcagg tgttcatggc ttcggctaac tcgggatgct gtttgtcgat gtccggataa
     2041 caaaccgcgt cgcgtaggct gccttgcgcc gtgtacgggc gttgcggcag gaagaggatg
     2101 tcttgatgcg gcggacggct gactttgccg ctgctgccga acggccaaag cccagccagc
     2161 gcgcacagca acgaagtttt gccgcaaccg ctcgggccgc gtatcagcag ggaatcgccg
     2221 cttttgagtt tgatgttgat gccgctcaac aggatttcgc cgttgtggcg gaacagagcg
     2281 acgttttcct gtggggaata ctccggccat accactcaac acggcctatg atggcgatgt
     2341 cgtcttgggt attactcaaa tctatttcaa acggtgcgta acgtggattt tcagacgtta
     2401 caagcagttt gcccggtata cgttgcacac gtttgacaaa gaggtcattg cctatacgca
     2461 agacatatag gccgtcgcgc ggctcggttt cggcgtggtt gattagaatg tttataaaag
     2521 gctttaacta gaaactgaac atggaacttg tataatagtt ccatgtttga aaaaatcttt
     2581 taatatcata catctaaaaa aacaaagcat ctgaagacca taagctaaac atgaaacttg
     2641 aatttaaagg cggagtttca tgtttaagcc tattttttcc gttttttagt cgatactgct
     2701 gcatatgttt tttgcaaatc ttcatcactt aattcagtca ggctttctac tgagaaattt
     2761 ttttcgaggt aacttttcaa ccaatcttca agctcaagct gttttacatt taatttgata
     2821 taagcgtatt tcttttttcg ccagtcggga tcgttgttct ttgatgttgc tgtattgctc
     2881 aacctaccca gccattttct gagataagtt tctgctttgt cgtaatcgct caatgcgatt
     2941 agtttgtaac ttggaacttt acagtgagca ttcagactag cccaaattgc acggattgat
     3001 tttggcgacc gtttggcaat ctcttctgct gcggcaactt gtttaacaag ttgttgcagc
     3061 tttgaagctt gctcaagcgt tatatgttcc ttgccgggtt ttgaatcgac acgggttctg
     3121 atgacgtgat tttgggtatt aatttgatga acaaccgaac cagatgaggc gataacagcg
     3181 ttactgacgt tgccgttaat ctgattctca acgtttgatt tgccaatagc gtcgtccaat
     3241 tttttattaa ggtcgtctga aacagcattt aaatttgccg aatgaatgcc tgtaaagaca
     3301 aattgaatat ccacccctaa ttggacagca gcaagtaaaa agtccgcagg aatgttgacc
     3361 tgcccgcttt catacagtct caaactttct gcactacatc cagtttgctc agcaaaattc
     3421 tttcgagagt atccaagtcg gcttctctct tcaactaaat tcaatgctaa atcaatgcgt
     3481 tccataaaaa caccgcaaaa tattaccaaa tatatttggt ataccaaata ttttgtgtat
     3541 atcatccaag taacagttaa ggcaggcatt aaagcctgta aggtaagtaa tggattctat
     3601 catggaggca ttatgcaagc gaacgaaatc tataaatcct tagaagaaaa aaatatatcg
     3661 gcaagaatgt tggcttcggc tttaggggta actaaccaat ctgtttctga ggtcataaga
     3721 aatggacgag gaagcaaaag aattgcggag gcaatcgcga aagtgattca aaaagattta
     3781 gttgaagttt ttccgcatta caagaaaaca gattgtcgag acaaaaagat agctgaattg
     3841 aaagagatgc tcggagtggg ttgaaatgga atatatggat ctcaaaagcc tgcttaattt
     3901 tgggttgcca aatatgccaa gaacagtaat agggctgaga aaaaaagcgc aaagggatgg
     3961 ttggcaaacg agaaggcgtc aaggtaaggg tggtggtgtt gaatatgccc tccctgccga
     4021 aatccgagca gccatcatga aacggcagtc ggacgagctg gcggagaaga tgccgaaaac
     4081 cctgccccaa gtcagaccgg ggacggcgat gtcggctcag gcactggctg aagcggccaa
     4141 gctgttgaac gagaaacaac ggtcggtggc ggatgcgcga tgtgcggtgg tggcggcggt
     4201 gttggggatt aaataccaat acgattgctc tgccaaggct gcggtggctc agtttttggg
     4261 cttgctggca gaaggtaaat tggacgcggt cacgcttggg aacttggaaa aggccaatga
     4321 ccgcagccgg tcggcgaagg ttggcgaacg tactttagac ggctggattt ctgcttattt
     4381 gaaagcggaa aacgcgacgg agcggttggt tgctttggct ccgaagacga cgaaggcggt
     4441 caagccgatt gaaagttacg gatggttgcc gatgtttatg cagtttcaca atattccgtc
     4501 cgcgccaaag ctggcgcaca gctaccgccg gtttgtgcag tgggcggaag cggaaaatat
     4561 gccggtcaat gatgtgccta acttgagtat ggtgcggcgc gtttgggaca agctgccgct
     4621 gattatgcag gagcgcggca ggaaaacggg ggcggcttat aaatcgctgc tgccttatgt
     4681 gaaacgtgat tggggggctt tgaagccgaa cgatgtttgg atcggcgacg gccacagctt
     4741 taaggcgaag gtggctcatc cggtacacgg caggccgttt aagccggaag tgacggtgat
     4801 tattgatggt tgtacgcggt ttgtggtggg tttttcggtg tcgttggctg aaagttgtgt
     4861 ggcggtatcg gacgctctgc gtatcggggt caagcacttt ggtttgccga ttatctacta
     4921 ctcggataac ggtggcggcc aaaccggcaa gacgatagac catgaaatca cgggtattac
     4981 gtcccgattg ggtatccggc atgaaacggg tatcgcgggc aacccgcaag gccgaggcat
     5041 catcgagcga tggtggaaag acaatctgat tgagatggcg cgccagtatg agacgtttgc
     5101 gggcgcgggg atggacagca gtaccaagaa cctgatgtac cgcaagatgg aaagtgcgtt
     5161 taacgctttg gaaaaaggca aggatttgac ggaggaacaa cagaaatatt tgaaaaaact
     5221 gccgggctgg tcgcgtttta tcgcggatgt ggtcaagtgt atcgacgaat acaacaaccg
     5281 cccgcacggc gagctgcccc gacatccgga cggcgggcat tattcgccga aggcttatcg
     5341 ggaaatgagg ctggaacagg acggtatcgc gccggatatg ttgtcggcgc aagagctggc
     5401 gacgatgttt atgccgcaag aggtgcgaaa ggtacagcgc ggttggctgg atttgttcaa
     5461 caactcttat ttttcggtgg agctggcgga gtatcacaaa gacgaggtac gggtcagcta
     5521 cgatttgagc gatgcgtcgg cggtcaatgt gtttgatatg gacggcaagt ttatcactaa
     5581 ggcgcaggcc aacggcaata cccgcgaggc tttcccgacg gctcgtatcg accaactggc
     5641 ggaaaaacgc cgaaaaggca aaatcaagcg ggcggaaaat gcaatcaagc tcgcaaatgc
     5701 agaagtcaat cctgctttgg aacaggctgc ggtttgggac gagctgggat atttgggcgg
     5761 aaacgtcatc gaggcggagt atgcggtatt gccgaaaacg ggcacggacg acgggatttt
     5821 cttgtttgag gcggatagaa gttaaaacgg ttttaaacct cttttaaaag gactaaaaaa
     5881 atgaaacaaa tcaatcaagc attgcaacaa aaactggctg aatttaaaga aaaatcgggt
     5941 atgagccaaa cccaactggc acgcggtatc ggtacttcgc cggcatccgt cagtatgtat
     6001 ctgaacggta cttatgcgga aaaaggcggc aattatgaaa ccatcgagcc aaaaatcgag
     6061 gcgtttttgg agatgcagga cagcaaagcg aaacgcgaag agctggtgtt gggttttgta
     6121 tcgactaaga cgacacgccg aatcgtggaa gcgatgcgca atgcgcacga aggcggcgag
     6181 atttccgtta tctacggtca ggcgggtttg ggcaagacgc aggcggtcaa aaactactgc
     6241 gagaaaaacc ctgcagccat cttgattgag gctaatccga gctttacggc tttggtcttg
     6301 atgcgcaagt tggcgacggc ggcgaaggta tcggcgatgg gcagcttgaa tgatttgttt
     6361 gaatcggtat cggacagatt gcgtgattca ggccatctga ttgtggtcga tgaagcggaa
     6421 aacctgccat tacgcgccct tgagattatc cgccgactgc acgatgagac tggctgcggt
     6481 ttggtgttga gcggtatgcc ccgactggtg gcgaatttgc gcggtaagta tggcgagttg
     6541 gtacagcttc acagtcgtgt ggcgggtgcg ctgaatctag gtgatacgat gcccgacgca
     6601 gagttggaac agattgcgcg ggcaacccta cccgaagccg atgatgaaac gattgcggaa
     6661 ctggttaagc atagcaatgg taatacacgg cgtatgagca agttgatgcg cggatcagta
     6721 cgggtagcga ataaaaacgg tattcgaatg caagcgggaa tcgtgaaaaa atattcgaca
     6781 ttgattatcc gataggccgt ctgaaacggt aagtctctga cagggctata tattttttac
     6841 cctatgattt taataagtta ttgttttcta aaggaaaact caaaatgcaa gttttgaaga
     6901 aagttgattg gaagatgttt gtggcacgct ctttttggca gtgtgtgccg gttggtttga
     6961 cggcgggcgt gtggtgtttt gtggcgggaa tggcgttgca ttcctgcgcg aaagaacccg
     7021 aaccggttgc gaaagagccg acgaaggttg aggcgatgga aagacaggcg gatttggagg
     7081 tcaaggtatg ggaagggcaa tacgagtcaa tgagcgtcga ggaaaaaatg aaagggattg
     7141 tttatgagtg ataagccaat tttattgagc cctgcggcga aaaaagaggc tttggcacgg
     7201 gcggtaaagg aaatccgcgc gaaatatggc gataaggcga ttgtgaaagg atgtgtgaaa
     7261 tgagtttcgg acgacgtaat acggattggc aggcttgggg acaacaccgc aggcgtgcga
     7321 cggcgcgaat ggcgcaaaaa agccgggagc gcgaaatcga ggaatatcag gcgcagtttg
     7381 aagataagga cggcaaaggt cgtctgaaaa cggaaggaaa caaagatgaa tgaaaaagat
     7441 ttaatcgaat ggctcgaaga ccgtggcgag ctgatggtca tgaagaagga cggcgaaggc
     7501 tttgtgattg cagcgcgtgc gccggacggg atgtggaaga ctgccgaggc ggaaactttg
     7561 gctcaggcga taactttatg ggaggaagtg tgatgtttaa gtttttgaga aaccgcgcga
     7621 aagttgaagc aattttaaac aagaaaggaa agtgaaatga aagtgtatgt ttttaaaatt
     7681 agtaatgaaa acggtaagtt aaagatagaa ctccccgaaa tcccaatggg taagcaaatt
     7741 gacgaagttg atttgattgc tgggctaacc acggaattta ttgcaagtat gttacgtgat
     7801 gcccaaaaag atcgtcgcaa attcgtaatc gacgcatcaa atcaattggc tgcaatccag
     7861 acatatcaaa aaatcttcaa ttaaggaagg aagagaaaat ggctaaaacc cgaatcaaac
     7921 agcccgccat cgaagcggca caagacaaaa cggaagttac tgcatttatc cgccaaatcg
     7981 gcgacttgca gcgcgaagtc aaacgcctgg aaaccgaagc cggagacaaa aaagcggcta
     8041 tcgaagaaga atatgccgcc aaagccgcgc cgatgtgtgc cgaaatcatg agcctgaccg
     8101 aacgtgtggc cgcctactgc gaagcgcata aggacgagct gacggaaaat ggtaaaacca
     8161 aaaccgtgga ctttaccacc ggcctgatta aatggcgcat ccgtccgcca tctgtcaagg
     8221 taacgggcgt ggccgccgtc ctggcgtggc tctcggaaaa atccgccttt gccgagtttg
     8281 tccgcactaa aaaggaaatc gacaaagaca ccatcctgaa tcaaaaagag tgtttttcag
     8341 acggccaagt tccggggatt aagattgtga gcggcgtgga ggattttgtg attgagccga
     8401 gcgaacaaat tctataaaat caacagcctg atttcaattc agtgtgttga aacgtgattg
     8461 agcctacgga gcaggagctt gcctagtcgg ttcaaatagg ctttaaccca tgatttaaag
     8521 g
//
LOCUS       DAXIFS010000074         8514 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.074, whole genome shotgun sequence.
ACCESSION   DAXIFS010000074 DAXIFS010000000
VERSION     DAXIFS010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8514
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.074"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(243..860)
                     /gene="thiE"
                     /locus_tag="ACFOCA_001179"
     CDS             complement(243..860)
                     /gene="thiE"
                     /locus_tag="ACFOCA_001179"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFC6987901.1"
                     /translation="MTFPPLKSPLKFYAVVPTADWVGRMVKAGADTVQLRCKTLHGDE
                     LKREIARCVAACQGSRTQLFINDHWREAIEAGAYGVHLGQEDMDTADLAAIAAAGLRL
                     GLSTHSVAELDRALSVHPSYVASGAIFPTTTKQMPTAPQGLDKLCEYVKQAGGTPVVA
                     IGGIDLNNARAVLATGVSSLAAVRAVTEAENPEAVVKAFQALWDG"
     gene            complement(881..1981)
                     /locus_tag="ACFOCA_001180"
     CDS             complement(881..1981)
                     /locus_tag="ACFOCA_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFC6987902.1"
                     /translation="MTRIAILGGGLSGRLTALQLAEQGYQIALFDKGCRRGEHAAAYV
                     AAAMLAPAAEAVEATPEVVRLGRQSIPLWRGIRCRLNTHTMMQENGSLIVWHGQDKPL
                     SSEFVRHLKRGGVADDEIVRWRADDIAEREPQLGGRFSDGIYLPTEGQLDGRQILSAL
                     ADALDELNVPCHWEHECAPEDLQAQYDWLIDCRGYGAKTAWNASAEHGSTLRGIRGEV
                     ARVYTPEITLNRPVRLLHPRYPLYIAPKENHVFVVGATQIESESQAPASVRSGLELLS
                     ALYAVHPAFGEADILEIATGLRPTLNHHNPEIRYSLARRLIEINGLFRHGFMISPAVT
                     AAAVRLAVALVDGKDAPERDEESGLAYIRRQD"
     gene            complement(1978..3201)
                     /gene="cytX"
                     /locus_tag="ACFOCA_001181"
     CDS             complement(1978..3201)
                     /gene="cytX"
                     /locus_tag="ACFOCA_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003519479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HFC6987903.1"
                     /translation="MSGNASSPSSSAAIGLIWFGAAVSIAEISTGTLLAPLGWQRGLA
                     ALLLGHAVGGALFFAAAYIGALTGRSSMESVRLSFGKRGSVLFSVANMLQLAGWTAVM
                     IYAGATVSSALGKVLWDGESFVWWALANGALIVLWLVFGARKTGGLKTVSMLLMLLAV
                     LWLSAEVFSTAGSTAAQVSDGMSFGTAVELSAVMPLSWLPLAADYTRQARRPFAATLT
                     ATLAYTLTGCWMYALGLAAALFTGETDVAKILLGAGLGAAGILAVVLSTVTTTFLDAY
                     SAGVSANNISAKLSETPIAVAVAVVGTLLAVLLPVTEYENFLLLIGSVFAPMAAVLIA
                     DFFVLKRREEIEGFDFAGLVLWLAGFILYRFLLSSGWESSIGLTAPVMSAVAIATVSV
                     RLFFKKTQSLQRNPS"
     regulatory      complement(3268..3371)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            3549..5033
                     /gene="tldD"
                     /locus_tag="ACFOCA_001182"
     CDS             3549..5033
                     /gene="tldD"
                     /locus_tag="ACFOCA_001182"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HFC6987904.1"
                     /translation="MPYNQAPDFLCADTMHPTYSAVQARLLEANRLSPELLAKSLCII
                     GAHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCI
                     DSINRSARAVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAI
                     AKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSA
                     GGGGRYDLAYFDENLVRQFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAV
                     GHGLEGDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVL
                     IEDGILVGYMQDETNARLTGTQSTGNGRRESYASVPMPRMTNTFMENGSYEPEEIIAS
                     IDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVS
                     MIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRIDAGLTVGGSAI"
     gene            5548..6369
                     /gene="prmC"
                     /locus_tag="ACFOCA_001183"
     CDS             5548..6369
                     /gene="prmC"
                     /locus_tag="ACFOCA_001183"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6987905.1"
                     /translation="MTFDEWLGLSKLPKNEARMLLQYASEYTRVQLLTRGGEEMPDEV
                     RQRADRLAQRRLNGEPVAYLLGWREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPEN
                     GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPSLETARKNAADLGARVEFAHGSWF
                     DTDMPSEGKWDIIVSNPPYIENGDKHLSQGDLRFEPQIALTDFSDGLSCIRTLAQGAP
                     DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMKHLK"
     gene            6455..7843
                     /locus_tag="ACFOCA_001184"
     CDS             6455..7843
                     /locus_tag="ACFOCA_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFC6987906.1"
                     /translation="MNAVVVAVIVMLVLSLSRVHVVLSLTVGAFVGGAVAGMPLQNIA
                     DAAGQVSQAGIIPVFNKGLEGGAKIALSYAMLGAFAMAITHSGLPQQLAGAVVRKLNR
                     GGMPDSVRSGEGAVKWLLLSIILVMGMMSQNIIPIHIAFIPMIVPPLLLVFNRLKIDR
                     RLIACVITFGLVTTYMFLPYGFGAIFLNEILLGNIHSAAPQLDVKNINVMAAMAIPAL
                     GMLAGLLLAFVHYRKPRLYQSNNADTAGNADAANRPQPSAYRSLAAAAAIAVCFAIQL
                     MYEDSLVLGAMLGFAVFMMLGVINRDKANDVFGEGIKMMAMVGFIMIAAQGFAAVMNA
                     TGHIQPLVESSMAIFGNSKGMAALAMLVVGLLVTMGIGSSFSTLPIIAAIYVPLCVGL
                     GFSPLATVAIVGTAGALGDAGSPASDSTLGPTMGLNADGQHDHIRDSVIPTFIHYNIP
                     LLIAGWIAAMVL"
     gene            7844..8068
                     /locus_tag="ACFOCA_001185"
     CDS             7844..8068
                     /locus_tag="ACFOCA_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HFC6987907.1"
                     /translation="MDAVQELEHRITELEIQSALQEDVIAGLNAMVAELRQTLDLQQA
                     QLRLLYQKMQDRNPDAQEPYSLRDEIPPHY"
BASE COUNT         1819 a         2293 c         2585 g         1817 t
ORIGIN      
        1 agccgaatta ctttattttt tgatacgcaa ccggccggtt gccgtcattc ccgcgcaggc
       61 gggaatccat ttttgaaatt cggaaactgt ttttcaaatg atggtttctc aagttttaag
      121 gcggattccc gcttgcgcgg aaatgacgga atttgatgat atgccacatt taaagttaag
      181 tatgtttgcg ataacgggct aagttttgcc gacacggcaa attgaatttt cttctttcgg
      241 ttttatccat cccacaaagc ctgaaacgct ttaaccaccg cttcgggatt ttccgcttcg
      301 gtcacggcgc ggacggcggc gagtgaggaa acgccggtgg cgagtacggc tcgggcgttg
      361 ttcaagtcga taccgccgat ggcgacgacg ggcgtgccgc ctgcctgttt cacatactcg
      421 cacagtttgt ccaagccttg cggggcggtg ggcatttgct tggtcgtggt cgggaaaatc
      481 gcgccgctgg cgacgtagct agggtgtacg gacagggcgc ggtcgagttc ggcaacggag
      541 tgcgtactca aacccaagcg caaaccggcg gcggcgatgg cggcaaggtc ggcggtgtcc
      601 atgtcttctt gtccgagatg cacgccgtac gcgcctgctt cgattgcctc gcgccagtgg
      661 tcgttgatga aaagctgcgt acggctgcct tgacaggcgg cgacgcagcg ggcgatttcg
      721 cgtttcaatt catcgccgtg cagggtcttg cagcgcagtt gcaccgtgtc ggcacctgct
      781 ttgaccatgc gccccaccca atcggcggtg gggacgacgg cgtagaattt gagcggggat
      841 ttcaagggcg ggaaggtcat ggggttcctt tcagacggct ttaatcttgt cttcggatat
      901 acgccaaacc gctttcttca tcacgttcgg gcgcgtcttt tccgtcaacc agtgccactg
      961 ccaatctgac ggcggcggcg gttacggcgg gggaaatcat gaagccgtgg cggaaaaggc
     1021 cgttgatttc aatcaggcgt cgggcgaggc tgtaacggat ttcggggttg tggtggttga
     1081 gcgtggggcg caggccggta gcgatttcga ggatgtcggc ttcgccgaag gcaggatgga
     1141 cggcatagag tgcggataag agttccagcc cggaacgcac gctggcaggg gcttggcttt
     1201 cgctttcgat ttgggtcgcg ccgacgacga agacgtggtt ttctttcggg gcgatgtaga
     1261 gcggataacg cggatggagc agacgcacgg ggcggttgag cgtgatttcg ggtgtgtaaa
     1321 cccgcgccac ttcgccgcgt atgccgcgca gggtgctgcc gtgttcggca gaagcattcc
     1381 acgcggtttt tgcgccgtag ccgcggcagt cgatcagcca gtcgtattgg gcttgcaggt
     1441 cttcgggggc acattcgtgt tcccaatggc aagggacgtt cagttcgtcc aaagcgtcgg
     1501 caagtgcaga caatatttgc cgcccgtcga gctggccttc ggtcggcagg tagatgccgt
     1561 ctgaaaaacg tccgccgagt tgcggttcgc gttcggcgat gtcgtcggcg cgccaacgga
     1621 cgatttcgtc atccgctacg ccgccgcgtt tgagatggcg gacgaactcg ctggataatg
     1681 gcttgtcctg tccgtgccac acaatcaggc tgccgttttc ctgcatcatc gtgtgcgtgt
     1741 tcagacggca tcggatgccg cgccaaagcg ggatgctctg cctgcccagc ctgaccactt
     1801 cgggcgtggc ttcgaccgct tccgccgcag gcgcgagcat ggcggcggca acataggcgg
     1861 cggcgtgttc gccccggcgg cagcctttat cgaaaagtgc aatctgataa ccttgttctg
     1921 caagctgcag tgcggtcagc cttcccgaga ggccgccgcc gaggatggcg atacgggtca
     1981 tgacgggttc ctttgtaaag attgggtttt tttaaagaaa aggcgtaccg atacggtggc
     2041 aatggcaacg gcagacatta cgggggcggt cagaccgatg ctgctttccc agccggacga
     2101 gagcaggaag cggtagagga tgaagcccgc cagccacaga accagtccgg caaagtcaaa
     2161 gccttcaatc tcctcacgcc gtttcaagac gaaaaagtcg gcaatcaaaa ccgccgccat
     2221 cggcgcaaat accgagccga taagcagcag gaagttttca tattcggtaa cgggcaggag
     2281 gacggcaagc agtgtgccga caacggcgac ggcaacggcg atgggtgttt ccgaaagttt
     2341 ggcggaaata ttgttggcac ttacgccggc ggagtaggca tcgagaaaag tggtggtaac
     2401 ggtcgacagg acgaccgcca aaatgcctgc cgcacccaaa cctgcgccca gcaggatttt
     2461 tgccacgtcg gtttctccgg tgaacaacgc cgctgccaaa cccaaggcat acatccagca
     2521 gcccgtcagc gtataggcga gcgttgccgt cagggttgcc gcaaacgggc ggcgtgcttg
     2581 gcgtgtgtag tcggcggcca gcggcagcca ggaaagcggc atgacggcgg acaattcgac
     2641 tgccgttccg aaactcatgc cgtctgaaac ctgtgcggcg gtgctgcctg ccgtggaaaa
     2701 gacttcggca ctcagccaca gaaccgccaa cagcatcagc agcatcgaaa cggttttcag
     2761 cccgcctgtt ttgcgtgcgc cgaaaaccag ccacagcaca atcagcgcgc cgtttgccaa
     2821 tgcccaccag acaaaagatt cgccgtccca caacactttg cccaaagcgg agctgaccgt
     2881 tgcgccggcg taaatcatca ccgctgtcca gccggccagt tgcagcatat tcgccacgga
     2941 aaacagcact gaaccgcgtt tgccgaacga caggcgcacg ctttccatcg agctgcgtcc
     3001 ggtcagtgcg ccgatatacg ccgccgcaaa aaacagcgcg ccgccgacgg catgacccaa
     3061 aagtagagcc gccagaccgc gttgccagcc caaaggcgca agcagcgtac ccgtgctgat
     3121 ttcggcaatc gagaccgccg cgccgaacca aatcagcccg atggcggcgg aagatgaagg
     3181 agaggaggca ttgcccgaca tatgacgtcc tttaaaaaga aggaaggtgg gcggggaagt
     3241 gcggaaaagg gaacggaagc ctgataaggc atttgacggt ttgtttccta cgcaggcatt
     3301 accccgacag gttctacgga ttctgctttc gcaatctcag ccgcccggcg gcggcactcc
     3361 gacaaggagc tttaagtgta cacaaaagca gggggcgttg gcaaaaatct tacatttcag
     3421 gcggcacggc gcatttctat agtggattaa caaaaatcag gacaaggcga cgaagccgca
     3481 gacagtacaa atagtacggc aaggcgaggc aacaccgtac tgttttttgt taatccacta
     3541 tataacaaat gccgtataat caagcccctg attttttatg cgccgacact atgcatccga
     3601 cctattccgc cgtacaggcg cggctgctcg aagccaaccg cctttccccc gaactgctcg
     3661 ccaaaagcct gtgcatcatc ggcgcgcacc acgtcgatta cgccgacatc tactgccagc
     3721 gcaccgctta tgaaagctgg catttggaag agggcatcgt caaatcgggc agcttccaaa
     3781 tcaatcaggg cgtgggcgtg cgcgccgttt cgggcgacaa aaccgccttt gcctacgccg
     3841 acagcctgtg catcgattcg ataaaccgtt ccgcccgcgc cgtccgcgcg attggggcgg
     3901 caggcggcaa ggtgtccgcc aaaatgccgt ctgaaacgcg cggcaagccg gtttgttccg
     3961 cgtccgaccc cattgccggc ctcgattccg ccgccaaagt cgcgctgttg aacaaagtgg
     4021 aagcaatcgc caaagccgcc gatccgcgca tcgtgcaagt gatggccggt ttgacctgcg
     4081 aatacgatat ggtttacctc gcccgtctgg acggcaaaca cgccgccgac atccgcccga
     4141 tggtgcgcct gaacgttacc gtcatcgcca aacagggcga acgccgcgaa cagggcagcg
     4201 cgggcggcgg cggacgctac gacttggctt atttcgatga aaacttggtg cggcagtttg
     4261 tcgatgccgc cgtcaaacag gcactcacca acctcgaatc ccgccccgcg cccgccggcg
     4321 aaatgaccgt cgttttgggc aacggctggc cgggcgtgtt gctgcacgaa gcggtcggac
     4381 acggtttgga aggcgatttc aaccgcaagg ggaccagcgt cttttccggc agaataggcg
     4441 agcgcgtcgc cgccaaaggc gttaccgtcg tcgatcaggg cgatattgcc ggccggcgcg
     4501 gttcgctcaa catcgacgac gaaggcaacg aaacccgccg caccgtattg attgaagacg
     4561 gcattttagt cggctatatg caggacgaaa ccaatgcccg cctgacgggt acgcaatcca
     4621 ccggcaacgg ccgccgcgaa agctacgcct ccgtcccgat gccgcgcatg accaatacct
     4681 ttatggaaaa tggcagctat gagccggaag aaatcatcgc gtccatcgac aaaggcattt
     4741 acgccgtcaa ctttggcggc ggacaggtgg acattaccag cggcaaattt gtgttcagcg
     4801 cgtccgaagc atggtgggtg gaaggcggca ggctgcaata ccccgtcaaa ggcgcgacca
     4861 ttatcggcaa cgggcccgaa gtgctgaaac acgtttcgat gataggcaac gataccgcgt
     4921 tggacagcgg tgtcggcgtg tgcggcaaag aagggcagag cgtccccgtc ggcgtggggc
     4981 agccgaccct gcgtatcgat gccgggctga ccgtcggcgg cagcgcaatc tgacgcggaa
     5041 tccggcacga tgccgtctga aaggttttca ggcggccttt tacattagga taaaaccatg
     5101 caggaacaga atcggaaatc aagttttccc atagtgatgt tgctggtgtc ggttgccctg
     5161 tggatagcgt ctttatccaa tgttgcattt tatttgggca atcatggaag catggagggt
     5221 ttgaccgttt tgattttggg gtcgatattt gcttctttgg atatcaggta ttgtgcggtc
     5281 tatgcgaatt atgtttggtt ggcggccatt gttttgctgg cgttgcggaa gaaggtcgtg
     5341 cctgtccatg cggcactttg gggcttggcg ttggtggctt tcagtgtgaa agccgtatac
     5401 gtcgatgaag cagggaatac atcggatatt gtgcgctacg gtgcaggatt ttatttgtgg
     5461 tatgccgcat ttgcggttgc caccatcggt acgtttgccg gaaagaataa ggaaagaaaa
     5521 gccgcatcag cggcagacgg gataaaaatg acgtttgacg aatggttggg cttgtcaaaa
     5581 ctgcccaaaa atgaagcaag aatgctgctg caatatgctt cggaatatac gcgcgtgcag
     5641 ttgttgacgc ggggcggtga agaaatgccg gacgaagtcc gacagcgggc ggacaggctg
     5701 gcgcaacgcc gtctgaacgg cgagccggtt gcctatctgt tgggctggcg cgagttttac
     5761 ggacggcgtt tcgccgtcaa cccgaatgtg ctgattccgc gccccgaaac cgaacatttg
     5821 gtcgaagccg tattggcgcg cctgccggaa aacgggcgcg tgtgggattt ggggacgggc
     5881 agcggcgcgg ttgccgtaac cgtcgcgctc gaacgccccg atgcgtttgt gcgcgcatcc
     5941 gacatcagcc cgccctccct tgaaacggcg cggaaaaatg cggcggattt gggcgcgcgg
     6001 gtcgaatttg cacacggttc gtggttcgac accgatatgc cgtctgaagg gaaatgggac
     6061 atcatcgtgt ccaacccgcc ctatatcgaa aacggtgata aacatttgtc gcaaggcgat
     6121 ttgcggtttg agccgcaaat cgcgctgacc gacttttcag acggcctaag ctgcatccgc
     6181 accttggcgc aaggcgcgcc cgaccgtttg gcggaaggcg gttttttatt gctggaacac
     6241 ggtttcgatc agggcgcggc ggtgcgcggc gtgttggcgg agaatggttt ttcgggagtg
     6301 gaaaccctgc cggacttggc gggtttggac agggttacgc tggggaagta tatgaagcat
     6361 ttgaaataat tgtttgcaaa attggcgggt tttccgttat tgggttatga tgtgtttcga
     6421 tatgtaaaca tttataggtt tggagcgata aacaatgaat gcagtcgtag ttgccgtaat
     6481 cgttatgctg gtgctgtcgc tgtcgcgcgt gcacgtggta ttgagcctga cggtcggcgc
     6541 gtttgtcggc ggcgcggtgg cgggtatgcc gctgcaaaac attgccgatg cggcgggaca
     6601 ggtcagccag gcggggatta tccccgtgtt caacaaaggt ttggaaggcg gtgcgaagat
     6661 tgcgctttct tatgcgatgc tcggtgcgtt tgcaatggcg attacccatt ccggcctgcc
     6721 gcagcagctt gccggcgcgg tcgtccgcaa gctgaaccgg ggcggtatgc ccgacagcgt
     6781 gcgttcgggc gagggcgcgg tcaaatggct gctgctttcc atcatccttg tgatgggcat
     6841 gatgagtcag aacatcatcc ccatccacat tgcctttatc ccgatgattg ttccgcctct
     6901 gcttttggtg ttcaaccgcc tgaaaatcga ccgccgcctg attgcgtgcg tcattacttt
     6961 cgggctggtt acgacctata tgttcctgcc ttacggcttc ggcgcgattt ttttgaacga
     7021 aatcctgttg ggcaacatcc attccgccgc gccgcagctt gatgtgaaaa acatcaacgt
     7081 aatggcggca atggcgattc ccgcgttggg aatgctggcc ggactcctgc tggcgtttgt
     7141 ccattaccgc aaaccgcgcc tgtaccaaag caacaatgcc gatacggcgg gcaacgccga
     7201 tgcggcaaac cgtccgcagc cgtccgccta ccgcagcctg gccgccgccg ccgccattgc
     7261 cgtatgcttt gccatccagt tgatgtatga agactcgctg gtgttgggcg cgatgctcgg
     7321 tttcgccgta tttatgatgt tgggcgtcat caaccgcgac aaggcaaacg acgtattcgg
     7381 cgaaggcatc aagatgatgg cgatggttgg cttcattatg attgccgcgc agggttttgc
     7441 cgccgtgatg aatgcgaccg ggcatattca gccgctggtg gaaagcagta tggcgatatt
     7501 cggcaacagc aaaggtatgg cggcattggc gatgctggtg gtggggcttt tggtaacgat
     7561 gggcatcggt tcgtcctttt ccactttgcc gattattgcc gcgatttatg tgcctttgtg
     7621 tgtcggtttg ggtttttcgc cgcttgccac cgtcgccatc gtcggcacgg cgggggcgtt
     7681 gggcgatgcc ggttcgcctg cgtccgattc cacgttgggc ccgacgatgg ggctgaacgc
     7741 cgacggacaa cacgaccaca tccgcgattc cgttatcccg accttcatcc actacaatat
     7801 cccgctgctg attgccggct ggattgccgc gatggtgctg taaatggacg cggttcaaga
     7861 gttggaacac cgcatcacag agctggaaat ccaatccgcg cttcaggagg acgtaatcgc
     7921 cggcctgaac gcgatggtgg cggaattgcg gcagacgctg gatttgcagc aggctcagtt
     7981 gaggctgctg tatcaaaaaa tgcaggacag gaatcccgac gcgcaagagc cgtattccct
     8041 gcgcgacgag attccgccgc attattgatg cgccgccgta tccggatttc cttaaaaaag
     8101 gctgtgtttg aatattccgc cgatgcaaac ctaagatata tagtggatta acaaaaatca
     8161 ggacaaggcg acgaagccgc agacagtaca aatagtacgg aaccgattca cttggtgctt
     8221 cagtacctta gagaatcgtt ctctttgagc taaggcgagg caacgccgta ctggtttttg
     8281 ttaatccact ataactttaa tcagtcggac aaaatgcctt tatccgatgg aaccgttttc
     8341 cgcccgaacg gaaataagcg gttttcccct gtaaacagat aaaaccaacc gggtattcat
     8401 acacagccaa aaaaaagccg tccgaaccca aaggggacag acggccaaac acattacggg
     8461 gaaaacgtct tactcaatga gtctgcgaaa cagacattgc taagacaact gcaa
//
LOCUS       DAXIFS010000075         8417 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.075, whole genome shotgun sequence.
ACCESSION   DAXIFS010000075 DAXIFS010000000
VERSION     DAXIFS010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8417
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.075"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            83..1267
                     /gene="coaBC"
                     /locus_tag="ACFOCA_001186"
     CDS             83..1267
                     /gene="coaBC"
                     /locus_tag="ACFOCA_001186"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFC6987908.1"
                     /translation="MGKHILLGVTGSIAAYKSCELVRLLKKQGHSVTVVMSRSATEFV
                     SPLTFQALSGNPVLTDTHGGNGSNGMEHINLTRNADVFLIAPASINTVAKICNGVADN
                     LLTSLAAARKCPLAIAPAMNVEMWLNPANQRNIAQLVSDGITVYMPGLGEQACGENGM
                     GRMPEPAELLDLLPDLWTPKILRGKKILITAGATFEAIDPVRGITNTSSGKMGVALAR
                     ACRAAGAEVSLIHGQLQTALPFGISDTVQAVSAEDMHRAVHRLIEKQDAFISVAAVSD
                     YKVKNRSTQKFKKDKNAKPLSIELDENPDILASIASLPNPPFCIGFAAETENVMAYAR
                     EKRIKKKIPVIVANDVSIAMGKPTNRITIIGDDGELSFPETSKDEAAMQIVERLAVYL
                     NK"
     gene            complement(1334..3490)
                     /locus_tag="ACFOCA_001187"
     CDS             complement(1334..3490)
                     /locus_tag="ACFOCA_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0015969 - guanosine tetraphosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT family protein"
                     /protein_id="HFC6987909.1"
                     /translation="MPVPQPTAPYDHLTAEARTLLFRTASYLKPEEQVELEKAVAYAF
                     HAHDGQTRKSGEPYITHPIAVATQLALWHMDIQGLCAGVMHDVLEDTGVTKGEMAAVF
                     GNTIAEMVDGLSKLEKLKFEDHAEHQAESFRKLILAMTKDVRVIVVKLADRLHNMRTL
                     GSMRPDKRRRIARETLEIYAQIANRIGLNNAYQELQDLSFQNLHPNRYETLKKAMDKS
                     RKNRQDVVGKVLRAFGQRLVGANIEAKIKGREKNLYGIHQKMMAKKLRFAEVMDIYGF
                     RVIVNSIPACYAALGALHTLYQPKPGRFKDYIAIPKSNGYQSLHTTLVGPYGLPIEVQ
                     IRTKEMDAVAEGGIAGHWSYKSYSKTVDQAVLHTNRWLKNILDLQASSANAIEFLEHV
                     KVDLFPNEIYILTPKGKILTLPKGATPVDFAYAVHTDIGHKTVAARINNIMMPLRTKL
                     KTGDSVEIITSEHAKPNPAWLNFAVSGRARSAIRQYIKNLNRHDAVVLGESLLQKALS
                     SLLPKDVLLSDGIKEKYLADLNDKQTSFEEVLYNVGMGHTLPVYVAMHIAELAGEHFG
                     SEVRLSSIKVDGQESGHIHFAECCHPVPGDSIRLLLVKGKGMIIHRDSCPTLLKSDPE
                     QQLDADWENMNGQNYRVGLQVQSEDSHGLLALMAQAISDSGADIESVETPSKSQSGTE
                     GFVEFKFLLKVKNLDQLNQIIQNLHSIPYIRKVIRS"
     gene            complement(3583..3789)
                     /gene="rpoZ"
                     /locus_tag="ACFOCA_001188"
     CDS             complement(3583..3789)
                     /gene="rpoZ"
                     /locus_tag="ACFOCA_001188"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFC6987910.1"
                     /translation="MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNN
                     KPTVTALREIAAGHIGTELLTRNK"
     gene            complement(3848..4465)
                     /gene="gmk"
                     /locus_tag="ACFOCA_001189"
     CDS             complement(3848..4465)
                     /gene="gmk"
                     /locus_tag="ACFOCA_001189"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFC6987911.1"
                     /translation="MSAYRKGNIFIISAASGTGKTTLVSRLLANHNGLRVSVSHTTRP
                     PREGEVNGVHYHFVSKEEFESLIAQEAFLEYADVFGNYYGTSAEGVNALAAAGYDVIL
                     EIDVQGAAQVRNALPEAVGIFILPPSFDVLAARLNGRGTDSREVIQRRLSKARHEIEQ
                     SVLFDFVVVNDDLARAEEDLRHIVNACRLKRSRQLGFIADLLENS"
     gene            4593..5192
                     /locus_tag="ACFOCA_001190"
     CDS             4593..5192
                     /locus_tag="ACFOCA_001190"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFC6987912.1"
                     /translation="MALKTSNLEHAMLVHPEAMSVGALADKIRKIENWPQKGILFHDI
                     TPVLQSAEYFRLLVDLLVYRYMDQKIDIVAGLDARGFIIGAALAYHLNVGFVPIRKKG
                     KLPFETVSQSYALEYGEAAVEIHTDAVKPGSRVLLVDDLVATGGTMLAGLELIRKLGG
                     EIVEAAAILEFTDLQGGKNIRASGAPLFTLLQNEGCMKG"
     gene            complement(5238..6026)
                     /locus_tag="ACFOCA_001191"
     CDS             complement(5238..6026)
                     /locus_tag="ACFOCA_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HFC6987913.1"
                     /translation="MNPKIVFFDIDDTLYRKYTDTLRPSVKTAVAALRGKGILTALAT
                     GRSLATIPEKVRDMMAETGMDAVVTINGQFALLHGKTVHEVPMDAGLMGRVCAHLDGL
                     GMDYAFVGGEGIAVSALSECVCRALKHIASDFFADKDYFSSKPVYQMLVFAEENEMPL
                     WSDIVEREGLKTVRWHEEAVDLLPAGASKTDGIRSVVEALGLEMADVMAFGDGLNDVE
                     MLSEVGFGVAMGNGEQAAKEAAKYVCPSVDEDGVLRGLQDLGVI"
     gene            6351..7706
                     /gene="yegQ"
                     /locus_tag="ACFOCA_001192"
     CDS             6351..7706
                     /gene="yegQ"
                     /locus_tag="ACFOCA_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HFC6987914.1"
                     /translation="MKAPELLLPAGGLERMRAAYDYGADAVYAGSPRYSLRARNNEFA
                     KLNVLEQGIKEAHERNKKFFLTVNTLPHNSKLKTFVSDMEPLIAMKPDALIMADPGLI
                     MTVREKWPEMPIHLSVQANTTNYWGVKFWQNIGVERIILSRELSMEEIAEIRQQCPDI
                     ELEVFIHGALCIAYSGRCLLSGYFNHRDPNQGTCTNSCRWDYKVHNATESDAGDARLL
                     QGFNFEKAQEEANQNFEGINGQKRHPYADKVFLIEESNRPGEMMPIMEDEHGTYIMNS
                     KDLRGIEVVEKLAKIGVDSLKVEGRTKSLYYVARVAQSYRKAIDDAVAGRPFDYSLLS
                     ELEGLANRGYTSGFLERHHTQDYQNYLTGHSTAKQSQYVGHVTEIDKNGWATIEVKNR
                     FAVGDSLEIIHPNGNQTIKLEQMTRKGQPVDVAPGNGIQVKIPNMRGKEKALIARVLN
                     P"
     gene            7840..8316
                     /locus_tag="ACFOCA_001193"
     CDS             7840..8316
                     /locus_tag="ACFOCA_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HFC6987915.1"
                     /translation="MPAVCQSGSAPKNAHTASAGTPAGESCKVIRDDTAGSGKNIIYR
                     CSNGQAAINAAIADGVLESGIPVSFGGGGVPVANGRNLVTRQAANGVGKSDSEACEHA
                     LINAARKFQQTAGKLGGRSVTGFHSYFDKQPLQGGQYDCQTGSFHVRVVMRANVVR"
BASE COUNT         2132 a         2314 c         1984 g         1987 t
ORIGIN      
        1 ttgtatccaa acggtatcta atgtatccac actttgttat agaatggctg ctgttttttc
       61 ttcgtaatta gaaattgtca aaatgggcaa acatattctt ttaggtgtaa cgggcagtat
      121 tgcggcgtat aagtcttgcg agttggttcg tctgctgaaa aaacaggggc attcggttac
      181 ggtggttatg agccgctcgg caactgaatt tgtttctccg ctgacttttc aggctttaag
      241 cggcaatcct gtcctgaccg acacgcacgg cggcaacggt tcaaacggta tggaacatat
      301 caacctgacc cggaatgcgg atgtttttct gattgcgccg gcaagtataa ataccgtggc
      361 aaaaatctgt aacggcgtgg cagataacct actgaccagt ctggcagccg cacggaaatg
      421 tccgcttgcc atcgctcccg cgatgaatgt ggaaatgtgg ctcaaccctg ccaaccaacg
      481 gaatatcgca caactggttt cagacggcat tactgtctat atgccgggct tgggcgaaca
      541 ggcttgcgga gaaaatggca tgggaaggat gccggaacct gccgaattgc tggatttgct
      601 tccggacttg tggacaccga aaattttaag gggcaagaaa atcttgatta ccgcaggtgc
      661 gacatttgaa gccattgacc ctgtcagggg catcacaaat acctccagcg gaaaaatggg
      721 ggtagctttg gcgcgggcgt gccgtgccgc cggtgcggaa gtcagcctga ttcacggaca
      781 gcttcaaacc gcgctgcctt tcggcatatc cgatacggtt caagccgtca gcgctgaaga
      841 tatgcatcgc gcagtgcatc gtttgattga aaaacaagat gcttttattt ctgttgccgc
      901 cgtctcagac tataaggtta aaaacaggag tacacaaaaa ttcaaaaaag ataaaaatgc
      961 caaaccgtta tccatcgaat tggatgagaa ccccgatatt ttggcttcta ttgcctcatt
     1021 gccgaacccg ccgttctgca tcggttttgc cgctgaaacg gagaatgtaa tggcatatgc
     1081 acgagaaaaa cgtattaaga aaaaaatacc ggtgatagtt gccaatgatg tttcaatcgc
     1141 gatgggcaaa ccgaccaacc ggattaccat tatcggggac gacggggaac tatcttttcc
     1201 cgaaacaagt aaagatgaag cggcgatgca gattgttgaa aggcttgccg tatatttgaa
     1261 caaataagca attgaacgga taaaccataa aacgggttgc ctgttaatca aaaggcaacc
     1321 cgttttacct gcttcaactt ctgatgactt tgcggatata tggaatacta tgcagatttt
     1381 gaataatctg attcaactga tccaaattct tgactttcaa taagaatttg aattcgacaa
     1441 aaccttccgt tcccgactgg gatttagacg gtgtttcgac cgactcgatg tccgcaccgg
     1501 aatcggaaat cgcttgcgcc attaatgcca acaggccgtg gctgtcttcc gattggactt
     1561 gaagcccgac acggtagttc tgcccgttca tattttccca gtctgcatcc agctgctgtt
     1621 cgggatcgga cttcaacaac gtcgggcagc tatccctatg gataatcatg ccttttccct
     1681 taaccaacag caaacggatg gaatcgccgg gaacagggtg gcagcactct gcaaaatgaa
     1741 tatgcccgct ttcctgacca tcgactttaa tggaactgag cctgacctcg ctgccgaaat
     1801 gctcccctgc caactcagca atgtgcatgg cgacataaac aggcagggta tgccccatcc
     1861 ctacgttgta cagcacttct tcaaacgatg tctgcttgtc gttgagatcg gcaagatatt
     1921 tttccttgat gccgtctgaa agcaggacat ctttgggcag caaactggac agggcttttt
     1981 gtaagaggct ctctcccaaa acgaccgcat cgtgccggtt aaggttttta atatattggc
     2041 gtatggcact gcgcgccctg ccggacacgg cgaaattcaa ccacgcggga ttgggtttgg
     2101 cgtgttcgga tgtgataatt tcaacagaat caccggtttt gagcttcgta cgcaacggca
     2161 tcatgatatt gttgatacgt gcggcaacgg ttttgtgccc gatatcggta tgcaccgcat
     2221 aagcaaaatc gacaggcgtt gcccctttgg gcaaagttag gatttttcct tttggcgtaa
     2281 ggatgtagat ttcgttcgga aacaaatcga ctttgacgtg ttcgagaaac tcaatggcat
     2341 tggcactgct tgcctgcaaa tctaagatat ttttcagcca ccggtttgtg tgaagcaccg
     2401 cctgatcgac cgtcttagaa tatgatttat agctccaatg tccggcgatt ccaccttcgg
     2461 caacagcatc catttccttg gtacgtatct gaacttcaat cggcaagccg taagggccga
     2521 ccaaagtcgt atgcagactt tgatacccgt tgcttttcgg aatggcgata tagtctttga
     2581 accgcccggg cttgggctga tagagggtgt gcaatgcgcc gagtgcggca taacaggctg
     2641 gaatgctgtt gacaatgacg cggaaaccgt aaatatccat aacctcggca aagcgcagct
     2701 ttttcgccat cattttctga tggatgccgt acaggttttt ttccctgcct ttgattttgg
     2761 cctctatatt cgcgcctacc agccgctggc cgaatgcgcg caagactttg ccgacaacgt
     2821 cctgccggtt cttccggctc ttgtccatcg ctttttttaa agtctcgtag cggttgggat
     2881 gcaggttttg gaacgataaa tcctgaagct cttgatatgc gttattcaaa cctatacggt
     2941 tggcaatctg tgcatagatt tcaagggttt cccttgcaat ccggcggcgt ttgtccgggc
     3001 gcatcgaacc gagtgtccgc atattatgca gacggtcggc aagtttaacg acaatcacgc
     3061 gcacatcttt ggtcattgcc aaaatcagtt tgcggaaact ctccgcctga tgttccgcat
     3121 gatcttcaaa tttgagtttt tcgagtttgg acagaccgtc caccatctcg gcaatcgtat
     3181 tgccgaacac cgccgccatt tccccttttg tcacgcccgt atcttccaat acgtcgtgca
     3241 tcacgcctgc acacagaccc tgtatgtcca tatgccaaag ggcgagctgc gtcgcaacgg
     3301 caattggatg cgtaatgtat ggttcgccac ttttccgggt ttgtccgtca tgagcgtgaa
     3361 atgcataggc aacggccttc tcgagctcaa cctgttcttc aggcttgaga taggaagcgg
     3421 tacggaaaag caaggtgcgt gcttcggcag ttaaatggtc gtaaggtgcg gtgggttgag
     3481 ggacaggcat ttcagacggc tttcggaaca tattttattt ttcgtttcaa accgtcggac
     3541 tgcacggcgg cagaatgtgc cgacgtgcgt ttccggcaga atttatttat tgcgcgtcaa
     3601 cagttccgta ccgatatgcc cggcggcgat ttcccttaag gcggtaacgg tcggtttgtt
     3661 attgcggaca tcgtccacaa gcggcgtatt gccattttca agctggcggg cccgacgggc
     3721 cgctaccaat gtcaggtcaa aatggttgga aatttttccg gtacagtctt cggtggtaat
     3781 acgtgccata ttatttgctt tctttcaaaa atatttaaaa taggaaactg ggtattttcg
     3841 cggtttttta ggaattttcc aacaaatctg caataaatcc cagttgccgc gaccttttca
     3901 gacggcaggc attcacaata tggcgcaaat cctcctccgc ccgcgccaag tcatcattga
     3961 ccacgacaaa atcgaacaat acggactgtt cgatttcatg ccttgccttc gacagcctcc
     4021 tttggataac ttcccgactg tccgtcccgc gtccgttcag acgtgcagca agcacatcga
     4081 aagacggcgg caggataaag atgccgacgg cttccggcag cgcgttgcga acctgcgccg
     4141 cgccctgaac gtcgatttcc aaaattacgt catagcctgc cgccgccaac gcattcacgc
     4201 cctccgcgct tgtgccgtaa tagttgccga acacgtctgc gtattccaaa aaagcttcct
     4261 gcgcgataag cgactcaaac tcttctttag aaacaaaatg ataatgtacg ccgtttactt
     4321 cgccttcacg cggcggacgc gtcgtgtgcg atacggaaac gcgcaaaccg ttatggtttg
     4381 ccaacagccg cgacaccagc gtggttttgc ccgtgccgga agcggccgaa atgataaaga
     4441 tgttgccttt tcgataagcg gacatatttt ttacctgtat attttccagc cgattgtatc
     4501 acaacggaca ctcggtttcc tatttgccga tgcccatatt ttgccgctat tgttttgatt
     4561 gatttggcaa gcggcaggct gacggctaca atatggcgtt aaaaacatca aacttggaac
     4621 acgcaatgct ggttcatccc gaagctatga gtgtcggcgc gcttgccgac aaaatccgca
     4681 aaatcgaaaa ctggccgcaa aaaggcatct tattccacga catcacgccc gtcctgcaaa
     4741 gcgcggaata cttccgactt ttggttgatt tattggttta ccgctatatg gatcagaaaa
     4801 tcgacatcgt tgccggtttg gacgcgcgcg gcttcattat cggcgcggca ctcgcctacc
     4861 atctcaacgt cggttttgtc cccatccgca aaaaaggcaa gctgcctttt gaaaccgtat
     4921 cgcaaagcta cgcgctcgaa tacggggaag ctgcggtgga aatccacacc gatgccgtca
     4981 aacccggttc gcgcgtgctg ctggtcgatg atttggttgc cacgggcggc acaatgcttg
     5041 ccgggctgga actgatccgc aaactcggcg gagaaattgt cgaagctgcc gctattttgg
     5101 aatttaccga ccttcaaggc ggcaagaata tccgtgcaag cggcgcgccc ttatttaccc
     5161 tgcttcaaaa cgaaggctgt atgaagggct gaaaaccgac cctgccgtct gaaaccggca
     5221 gggttgttat tatgcgttca aatcacgccc aaatcttgca agcccctcaa cacgccgtct
     5281 tcatcaacgc tggggcaaac atatttcgcc gcttctttcg ccgcctgttc cccgttgccc
     5341 attgccacgc cgaacccgac ttcagacagc atttccacat cgttcaaacc atcgccgaac
     5401 gccatcacgt ccgccatttc caaacccaat gcttcaacca cgcttctgat gccgtctgtt
     5461 ttcgacgcac ccgcaggcag cagatcgacc gcttcctcat gccagcgcac cgttttcaag
     5521 ccttcccgtt ccacaatatc cgaccaaagc ggcatttcgt tttcctccgc aaacaccagc
     5581 atctgataca ccggtttgct tgaaaaataa tccttatcgg caaaaaaatc gctggcgata
     5641 tgcttcaagg cgcggcacac gcattccgac agtgcggaca ccgcaatccc ctctccgccg
     5701 acaaacgcat aatccatgcc caagccatcc aaatgcgcgc aaaccctgcc catcaaaccg
     5761 gcatccatcg gtacttcgtg cacagttttt ccgtgcagca gcgcaaactg tccgtttatc
     5821 gttaccacgg catccatacc cgtttccgcc atcatgtccc tgaccttttc gggaatcgtc
     5881 gccaaagacc gccccgttgc caacgccgtc aatatacctt tgccgcgcaa agccgccacc
     5941 gccgttttca cggaaggacg caaggtatcc gtatatttgc ggtacagcgt atcgtcaata
     6001 tcgaaaaaca cgattttggg attcatcaca ttctctctcg cattcaaatt gccgcattgt
     6061 atcccaagca ggcaaatact tgataaatcc ttataaattt cccggcaaaa ttgaccgcga
     6121 acacgaaaag gcggataatc cgcccatcct caaacccttt tcagacggca tttgcagcaa
     6181 tgccgtctga aacattttta caaagcacac aaatcatgtt tcaacacaca ggacgacaca
     6241 taaagcgtcg ccctatatgt tgccctgatt cggaaagggt tacacccctc ccaaataaag
     6301 tctgattcta ccgccctaaa gggcggggtt tcaaccgaaa aggaaacacg atgaaagcac
     6361 ccgaactctt attgcccgcc ggcggattgg aaagaatgcg cgccgcctac gattacggcg
     6421 cagatgccgt ttacgccggc agcccgcgtt actccctgcg cgcccgcaac aacgaatttg
     6481 ccaaactcaa cgtccttgag caaggcatta aagaagcgca cgagcgcaac aaaaaattct
     6541 ttttgaccgt caacaccctg ccgcacaact ccaaactcaa aacctttgtt tccgatatgg
     6601 aacccttgat tgccatgaaa cccgacgcgc tgattatggc ggatccgggt ttgatcatga
     6661 ccgtgcgcga aaaatggccg gaaatgccga tccacctgtc cgtacaagcc aacaccacca
     6721 actactgggg cgtgaaattc tggcagaata tcggcgtcga acgcatcatc ctgtcgcgcg
     6781 aattgagtat ggaagaaatc gccgaaatcc gccaacaatg ccccgacatc gaactcgaag
     6841 tcttcattca cggcgcattg tgcatcgcct actccggccg ttgcctactc tccggctact
     6901 tcaaccaccg cgaccccaac caaggcacct gcaccaactc ctgccgttgg gactacaaag
     6961 tccacaacgc tacggaaagc gatgcgggcg atgcccggct tctgcaaggt ttcaactttg
     7021 aaaaagccca agaagaagcc aaccaaaact ttgaaggcat caacggtcaa aaacgccatc
     7081 cctacgccga caaggttttc ctgattgaag aatccaaccg tccgggcgag atgatgccga
     7141 ttatggaaga cgaacacggc acctacatca tgaactccaa agaccttcgt ggcattgaag
     7201 tggttgagaa actcgccaaa atcggcgtgg acagcctcaa agtcgaaggc cgcaccaagt
     7261 cgctctatta tgtcgcacgc gtcgcccaat cctaccgcaa agcgattgac gatgccgtcg
     7321 caggccgtcc gtttgattac agcctgttga gcgaactcga aggccttgcc aaccgcggct
     7381 acaccagcgg cttcctcgaa cgccaccaca ctcaggatta tcaaaactac ctgaccggcc
     7441 attccaccgc caaacaaagc caatacgtcg gacacgttac cgaaatcgac aaaaacggct
     7501 gggcgaccat cgaagttaaa aaccgctttg ccgtcggcga ttcgctcgaa atcatccacc
     7561 cgaacggcaa ccaaaccatc aaattggaac aaatgacccg caaaggccaa cctgtcgatg
     7621 tcgcacccgg caacggcatc caggtcaaaa tccccaatat gcggggcaaa gaaaaagccc
     7681 tcatcgcacg cgtgttgaac ccctgagcca caatgccgtc cgaaccccgt tttcagacgg
     7741 cattttgttg aatcttacgg tacaatggca atgatttccc acagcaaaca aggacatccg
     7801 acatgaaaaa aaatcctcat actctccgcc gccgccctga tgccggcagt ctgccaatcc
     7861 ggcagcgcac ctaaaaacgc gcacacggca tccgccggca caccggccgg agaatcatgc
     7921 aaagtcatcc gggacgacac cgcaggaagc ggcaaaaaca tcatttaccg ttgcagcaac
     7981 ggtcaggcgg caataaatgc agccattgca gacggcgtat tggaatcagg gattcccgtc
     8041 agcttcggcg gcgggggcgt accggttgca aacggcagga atctggttac acggcaagca
     8101 gcaaacggcg ttggcaaatc cgactccgag gcctgcgaac acgccctaat caatgccgcc
     8161 cgcaaattcc agcagaccgc aggcaaactc ggcgggcgca gtgttaccgg cttccacagc
     8221 tacttcgaca agcagccgct gcaaggcggg caatacgact gtcagacagg ttcgttccac
     8281 gtccgcgtgg tcatgcgcgc caatgtcgtc cgttaacata tcggcaatca aaaaattagg
     8341 ctgtgtttta gtaatctgtt gatttcaatt atttgcaaag gaaaagacaa ttattttttc
     8401 ggttaggaag agaccta
//
LOCUS       DAXIFS010000076         8373 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.076, whole genome shotgun sequence.
ACCESSION   DAXIFS010000076 DAXIFS010000000
VERSION     DAXIFS010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8373
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.076"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            535..2247
                     /locus_tag="ACFOCA_001194"
     CDS             535..2247
                     /locus_tag="ACFOCA_001194"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFC6987916.1"
                     /translation="MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMP
                     MGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDR
                     DFCMGPTCEEVIADIVRKEINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDA
                     YSFHADYASLQTTYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE
                     DVIAYSDTSDYAANIELAPTLPLKGERTAAQAELTKVHTPNVKTIESLVEFLNIPVEQ
                     TLKSIVVESENEGEIVLLLLRGDHEFNDIKAEKLAGVKSPLTMASSAAIVEQFGANGG
                     SLGPVGFKGKVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGD
                     ESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVV
                     AAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLD
                     DRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTA
                     LLNG"
     gene            2310..2966
                     /locus_tag="ACFOCA_001195"
     CDS             2310..2966
                     /locus_tag="ACFOCA_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFC6987917.1"
                     /translation="MASVFLEGEAVEVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKP
                     SGSILNSGGTILLPEFSRDVQFECELVLLVGKDSDGTGEGKDILGCVAGYGVGLDLTA
                     RDIQCRLKEKGLPWLKAKGFRHSACVSDFAAAGRIGNPENVLFSLKQNGVLKQRGDTG
                     LMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGAIGAGDNLALELDGLVRASFTVGC
                     "
     gene            complement(2976..3431)
                     /gene="ruvX"
                     /locus_tag="ACFOCA_001196"
     CDS             complement(2976..3431)
                     /gene="ruvX"
                     /locus_tag="ACFOCA_001196"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFC6987918.1"
                     /translation="MHKIPKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDE
                     KFAAIAKLVQEWQPRYFVVGLPVHTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERL
                     SSVYAESLLSEAQVFGKKRKSVLDQVAAQAILHGFFEGGPAECFNGREG"
     gene            complement(3424..3972)
                     /locus_tag="ACFOCA_001197"
     CDS             complement(3424..3972)
                     /locus_tag="ACFOCA_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HFC6987919.1"
                     /translation="MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSP
                     ITMDMIFSATGKNIPMRMQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTS
                     SRDVIENISREGAVDKALISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHR
                     YAAAFAKLGIDPLALFSGAGHA"
     gene            complement(3974..4534)
                     /locus_tag="ACFOCA_001198"
     CDS             complement(3974..4534)
                     /locus_tag="ACFOCA_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HFC6987920.1"
                     /translation="MNRLLLLSAAVLLTACGSGETDKIGRASTVFNILGKNDRIEVEG
                     FDDPDVQGVACYISYAKKGGLKEMVNLEEDASDASVSCVQTASSISFDETAVRKPKEV
                     FKHGASFAFKSRQIVRYYDPKRKTFAYLVYSDKIIQGSPKNSLSAVSCFGGGIPQTDG
                     VQADTSGNLLAGACMISNPIENPDKR"
     gene            4862..6667
                     /locus_tag="ACFOCA_001199"
     CDS             4862..6667
                     /locus_tag="ACFOCA_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFC6987921.1"
                     /translation="MRYKPLLLALMLVFSTPAVAAHDAAHNRSAEVKKQTKNKKEQPE
                     AAEGKKEKGKNGAVKDKKTGGKEAAKEGKESKKTAKNRKEAEKEATSRQSVRKGHEGD
                     KKSKAEHKKAHGKPVSGSKEKNAKTQPENKQGKKEAKGQGNPRKGGKAEKDTVSANKK
                     VRSDKNGKAVKQDKKYREEKNAKTDSDELKAAVAAATNDVENKKALLKQSEGMLLHVS
                     NSLKQLQEERIRQERIRQERIRQARGNLASVNRKQREAWDKFQKLNTELNRLKTEVAA
                     TKAQISRFVSGNYKNSQPNAVALFLKNAEPGQKNRFLRYTRYVNASNREVVKDLEKQQ
                     KALAVQEQKINNELARLKKIQANVQSLLKKQGVTDAAEQTESRRQNAKIAKDARKLLE
                     QKGNEQQLNKLLSNLEKKKAEHRIQDAEAKRKLAEARLAAAEKARKEAAQQKAEARRA
                     EMSNLTAEDRNIQAPSVMGIGSADGFSRMQGRLKKPVDGVPTGLFGQNRSGGDVWKGV
                     FYSTAPATVESIAPGTVSYADELDGYGKVVVVDHGENYISIYAGLSEISVGKGYMVAA
                     GSKIGSSGSLPDGEEGLYLQIRYQGQVLNPSSWIR"
     gene            6794..8278
                     /locus_tag="ACFOCA_001200"
     CDS             6794..8278
                     /locus_tag="ACFOCA_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFC6987922.1"
                     /translation="MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQ
                     SIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSG
                     EFGGLGMEIGQEDGFVKVVSPIEDTPAEQAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
                     RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVE
                     SVNTAAKELVKENKGKPLKGLVLDLRDDPGGLLNGAVGVSAAFLPPEAVVVSTKGRDG
                     KDRMVLKAVPEDYVYGMGGDPLAGIPAELKTVPMTVLINSGSASASEIVAGALQDHKR
                     AVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERI
                     FESREADLVGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPN
                     PAKDDQLRKALDLVKSPEQWQKSLGLAAKKPVSNKDKKDKKDKK"
BASE COUNT         2214 a         1991 c         2348 g         1820 t
ORIGIN      
        1 gaaacaaggg aaaacttgaa aaaaatgttc gatctgctcc acacgaaatc ctatcagcaa
       61 tcgggtctgc tggcaaataa ccatgcctgt aaaagcaggt tttatactga agttggcgtt
      121 tggtaaggtc aagtcttttt gatttcgaaa tattctgttt gattttggcg atattttttc
      181 ggaattgtgg tatatcgaat cattatgtct ctgtcggcaa ttttcctatt gtagaaaatc
      241 tatacacaag ctttgtggat aaccgtgttg ataagccacg gcttgtgtta aaaaagtctt
      301 acgcaacaaa tgtacgctta ttttgattaa aaaataggca catttaaatc tataaaaatc
      361 atgtgcttat gttcaatatg atgtttctgg tcatgttttt gccgtctgtt atgggatttg
      421 tcccgcgctt ggggcagggg gtaaattttg gaggttggtg caaaacctgc ttttttcgcg
      481 ttacaatctg cacccgattt acttttgaat ttgcctgttt ggaaaaatat ttttatgaaa
      541 gccagccaat tctttatctc tactttaaaa gaagcccctg ccgaagccgc gcttgccagc
      601 cacaagctga tgatacgcgc cggtctgatt aaagccaacg cgtccggcct ttatacttgg
      661 atgccgatgg ggctgcgcgt gttacgcaaa gtcgaaaacg tcgtgcgcga ggaaatggcg
      721 cgcgcgggca gcgtggagct gctgatgccg gtggtgcagc ctgccgagct gtggcaggaa
      781 tccggccgct gggaatttta cggtaaagaa ctgctgcgcc tgaaagaccg ccacgaccgc
      841 gatttctgca tgggaccgac ctgcgaggaa gtcatcgccg acatcgtgcg caaagaaatc
      901 aacagctaca aacagctgcc gaaaaacttt taccacatcc aaaccaaatt ccgcgatgaa
      961 gtgcgcccgc gtttcggcgt gatgcgcgcg cgcgagttcg tcatgaaaga cgcttattcc
     1021 ttccatgccg actacgcctc gcttcagacg acctatgatg ccatgtatga cgcttactgc
     1081 cgcatcttta cccgtctggg cttggcattc cgccccgtcg ccgcagacac cggcagcatc
     1141 ggcggtacgg gttcgcacga gtttcaagtg ttggcggaaa gcggcgaaga tgttattgca
     1201 tacagcgaca cttccgatta cgccgccaat atcgagttgg caccgacctt gccgcttaaa
     1261 ggcgaacgca ccgctgctca ggccgagttg accaaagtac atacaccaaa tgtcaaaacc
     1321 attgagtctt tggttgaatt cctgaatatt ccggttgaac aaaccctcaa atccatcgtg
     1381 gtcgaaagcg aaaacgaagg cgaaatcgtc ttattactgt tgcgcggcga ccatgagttc
     1441 aacgacatca aagccgaaaa actcgcaggc gtgaaatcgc cattgacgat ggcaagttct
     1501 gccgcgattg tcgaacagtt cggcgcaaac ggcggctctc ttggtcctgt cggcttcaaa
     1561 ggcaaagtct atgccgattt cgctaccgaa aaaggcgcgg actgggtcat cggtgcgaac
     1621 gaagacggct accactacac cagcttcaac ttcgggcgcg atgccgccga gcctgaattc
     1681 gtcgatttgc gtaatgtggt cgaaggcgac gaaagccccg acgggcaagg ccgtctgaaa
     1741 ctcgcgcgcg gcattgaagt cggacacgtc ttccagttgc gcgacaaata cacccaagcc
     1801 atgaacgtaa gcttccttga caacaacggc aaatcgcaaa ttatggaaat gggctgctac
     1861 ggcatcggca tcacccgcgt cgttgccgcc gccatcgagc agaataacga cgaaaaaggc
     1921 atcatctgga ccaaagcaat ggcgccgttt gaagtcgtta tcgtgccgat gaactacaaa
     1981 aaatcagaca ccgtacgcga agccgccgac aaaatctatg ccgaattgct ggcggcaggc
     2041 gcggatgtgc tgctggatga ccgcgacgaa cgcgcaggcg tattgctgaa cgattccgag
     2101 ctgttgggta ttccgcaccg catcgtcatc ggcgaccgcg ctttgaaaga aggcaatgtc
     2161 gaatacgccg aacgccgcaa caacgaagcg caggcagttg caatcggaga aattgttgcg
     2221 cgtgtaacag ctttattaaa tgggtaagct tggtcaaatg ccgtctgaaa ataatttcag
     2281 acggcatttt tatttgggga gaaagtgaag tggcttcagt atttttagaa ggagaagcag
     2341 tcgaggtcgg caatattttc tgtatcggca ggaactatgc cgcacatatt gaagagttaa
     2401 aaaacgaaat accttccgaa cctgtggtgt ttatgaagcc gtcaggcagc attttgaaca
     2461 gcggcggtac aatcttgctg cccgagttta gtagggatgt gcagtttgag tgcgaactcg
     2521 tgctgctggt cggtaaggat tcagacggca cgggcgaggg taaagatatt ttgggatgtg
     2581 tcgcaggata tggtgtaggg ctggacctta cggcacggga tatccaatgc cgtctgaagg
     2641 aaaaagggct gccctggctg aaggcaaaag ggttcaggca ttccgcgtgc gtgtcggatt
     2701 ttgcggcggc aggcagaatc ggcaatcccg agaatgtgtt gttttcatta aaacaaaacg
     2761 gcgtattgaa acagcgcggg gataccggtt tgatgattta cccgattcgg gaaattttac
     2821 acaaactggc ggcagattac ggtttgggga aaggggattt ggtgtttacc ggaacgccct
     2881 ccggcgtggg cgcaatcggt gcgggggaca atttggcatt ggagctggac ggcttggtgc
     2941 gcgcctcttt cacggtaggg tgttaaccgc gccgcttaac cctcacgccc gttgaaacat
     3001 tccgccggac cgccctcgaa aaaaccgtgc aagatggctt gcgccgccac ttggtcgagc
     3061 accgatttgc gttttttgcc gaagacctgt gcttccgaaa gcaggctttc ggcatagacg
     3121 gacgacagcc gttcgtcaac ccaatagacg gggagattga acctgccgtt cagcctgcgt
     3181 ccgaacttgc gcgacaggtg cgtcatttca tgtttcgtgc cgtcggtatg cacgggcagt
     3241 ccgacgacaa aataacgcgg ctgccattct tgaaccagct tggcgattgc cgcgaacttt
     3301 tcatcgttgc tgccgccggt aacggtgctc aaaggatggg atagccctaa ttccgcgtct
     3361 ccttgtgcca cgccgatacg cgcttcgccg aagtcgaatg ccagtgccgt tccttttgga
     3421 attttatgca tggccggctc ccgaaaacag ggcgagcggg tcgatgccga gtttggcgaa
     3481 tgcggcggcg taacggtgtt cgtaggggat gtcgaacagg atgtgttcgt cggcgggaac
     3541 agtcagccac gcattgtcgg caagttcgcg ttcgagctgg ccttttcccc agcttgaata
     3601 gcctatgctg atcaaggctt tgtcaaccgc accttcgcgt gaaatatttt caatcacgtc
     3661 tcgggaagaa gttagcgcga tattgtctga aacgccgata ctgctttgcc agttgccgat
     3721 cggggtatgc acgacataac ctcgctcgac ttgcaccggc ccgcccatca tcacgctgtc
     3781 gtgctgcatc cgcatgggga tgtttttgcc ggtggcggaa aaaatcatgt ccatcgtaat
     3841 cggagagggt ttgttgatgg cgatgccgag tgcgccgtct tcatcgtgtt tgcagatata
     3901 gacgaccgat tgtgaaaaaa acgcgtcttc catatcgggc atggcgacga gaaagtggtt
     3961 ggagaggttc atatcagcgt ttgtcgggat tttctatcgg gttggaaatc atgcaggcgc
     4021 cggcaagcag gttgccggaa gtatcggctt gcaccccatc ggtttgcggt atgccgccgc
     4081 cgaaacagga aaccgcgctt aaggaatttt tcggcgagcc ttggatgatt ttatcgctgt
     4141 acaccaaata ggcgaaggtt ttgcgtttgg ggtcgtaata acggacaatc tgccggctct
     4201 tgaacgcgaa gctcgcaccg tgtttgaaaa cttctttcgg tttgcgcacg gcggtttcgt
     4261 caaaagaaat cgaagatgcc gtctgaacgc acgaaaccga tgcgtcggac gcgtcctctt
     4321 ccaaattgac catttccttc aagccgcctt tttttgcata cgaaatataa caggcaaccc
     4381 cttgaacgtc gggatcgtcg aatccttcca cttcgatacg gtcgtttttg cccagtatgt
     4441 tgaaaacggt acttgcccgt ccgattttat cggtttcgcc gctgccgcag gcagtcagca
     4501 ggacggcggc agacagcagt agcagtctgt tcatcaaaat ttccttatcg gttgaatccc
     4561 cgttttccgt gaaggcggca gggcttgctt tgtttggagg ggcgcacgtt cccaaaatcg
     4621 ggcaacatac ggtatgcggc ttaatgtgct accctgtgtg tcggaacaca atatccgttg
     4681 cggcattgaa aatatgatgc acaatataag gctgtttgag ccgattgcaa gtatccgcgc
     4741 aaagaaggcg caagattggg caaacggcat tttcagacgg cataactgac agtataatcc
     4801 aaacgtccgg ctgctttcgt gcagccttca gtattatcca actttttccg aaggtcgaac
     4861 catgcgctac aaaccccttc tgcttgccct gatgctcgtt ttttccacgc ccgccgttgc
     4921 cgcccacgac gcggcacaca accgttccgc cgaagtgaaa aaacagacga agaacaaaaa
     4981 agaacagccc gaagcggcgg aaggcaaaaa agaaaaaggc aaaaatggcg cagtgaaaga
     5041 taaaaaaaca ggcggcaaag aggcggcaaa agagggcaaa gagtccaaaa aaaccgccaa
     5101 aaaccgcaaa gaagcagaga aggaggcgac atccaggcag tctgtgcgca aaggacacga
     5161 aggggataag aaatcgaagg cggaacacaa aaaggcacat ggcaagcccg tgtccggatc
     5221 caaagaaaaa aacgcaaaaa cacagcctga aaacaagcaa ggcaaaaaag aggcaaaagg
     5281 acagggcaat ccgcgcaagg gcggcaaggc ggaaaaagac actgtttctg caaataaaaa
     5341 agtccgttcc gacaagaacg gcaaagcagt gaaacaggac aaaaaataca gggaagagaa
     5401 aaatgccaaa accgattccg acgaattgaa agccgccgtt gccgctgcca ccaatgatgt
     5461 cgaaaacaaa aaagccctgc tcaaacaaag cgaaggaatg ctgcttcatg tcagcaattc
     5521 cctcaaacag cttcaggaag agcgtatccg ccaagagcgt atccgccaag agcgtatccg
     5581 tcaggcgcgc ggcaaccttg cttccgtcaa ccgcaaacag cgcgaggctt gggacaagtt
     5641 ccaaaaactc aataccgagc tgaaccgttt gaaaacggaa gtcgccgcta cgaaagcgca
     5701 gatttcccgt ttcgtatcgg ggaactataa aaacagccag ccgaatgcgg ttgccctgtt
     5761 cctgaaaaac gccgaaccgg gtcagaaaaa ccgctttttg cgttatacgc gttatgtaaa
     5821 cgcctccaat cgggaagttg tcaaggattt ggaaaaacag cagaaggctt tggcggtaca
     5881 agagcagaaa atcaacaatg agcttgcccg tttgaagaaa attcaggcaa acgtgcaatc
     5941 tctgctgaaa aaacagggtg taaccgatgc ggcggaacag acggaaagcc gcagacagaa
     6001 tgccaaaatc gccaaagatg cccgaaaact gctggaacag aaagggaacg agcagcagct
     6061 gaacaagctc ttgagcaatt tggagaagaa aaaggccgaa caccgcattc aggatgcgga
     6121 agcaaaaaga aaattggctg aagccagact ggcggcagcc gaaaaagcca gaaaagaagc
     6181 ggcgcagcag aaggctgaag cacgacgtgc ggaaatgtcc aacctgaccg ccgaagacag
     6241 gaacatccaa gcgccttcgg ttatgggtat cggcagtgcc gacggtttca gccgcatgca
     6301 aggacgtttg aaaaaaccgg ttgacggtgt gccgaccgga cttttcgggc agaaccggag
     6361 cggcggcgat gtttggaaag gcgtgttcta ttccactgca ccggcaacgg ttgaaagcat
     6421 tgcgccggga acggtaagct atgcggacga gttggacggc tacggcaaag tggtcgtggt
     6481 cgatcacggc gagaactaca tcagcatcta tgccggtttg agcgaaattt ccgtcggcaa
     6541 gggttatatg gtcgcggcag gaagcaaaat cggctcgagc gggtcgctgc cagacgggga
     6601 agaggggctt tacctgcaaa tacgttatca aggtcaggta ttgaaccctt cgagctggat
     6661 acgttgatcg gattgccgaa acggtaggct ttatgcaaat cgtgccgata tggtgcgctg
     6721 ttccgtgaag tttgccgttt gccgtacctg tattttccgg tttttggaaa tcaagagaga
     6781 aagttaaaga agaatgtcga aacctgtttt taagaaaatc gcactttata ctttgggtgc
     6841 aatcagcggc gtggccgtca gtctggcggt gcagggtttt gccgccgaga aggacaggcg
     6901 ggataacgaa gtcctgccgg tgcaatccat ccgcacaatg gcggaggttt acggtcaaat
     6961 caaggcaaac tactatcagg acaaacccga tgccgatttg tttgaaggtg cgatgaaggg
     7021 tatggtggcc ggtttggatc cgcattccga atatatggat aaaaaaggtt atgccgagat
     7081 aaaggagtcc accagcggcg aatttggcgg cttggggatg gaaatcgggc aggaagacgg
     7141 atttgtcaaa gtggtttcgc cgattgagga cacgcctgcg gaacaggcgg gggtgaaaag
     7201 cggcgatttc attgtgaaaa tcgataatgt ttcgacacgc ggcatgacgg tcagcgaagc
     7261 ggtgaagaaa atgcggggca agccgggtac gaagattact ttgacgctgt cgcgcaaaaa
     7321 tgccgacaag ccgatagtcg tcaacctgac ccgtgccatt attaaagtga aaagcgtccg
     7381 ccatcacctg atcgaacccg attacggcta tatccgcgtg tcgcagttcc aagagcggac
     7441 ggtcgaaagc gtcaataccg ccgcaaaaga gctggtaaag gaaaataaag gaaaaccgct
     7501 caaggggctg gtgttggatt tgcgcgacga ccccggcggg cttttgaacg gcgcggtcgg
     7561 cgtgtcggcg gcgtttttgc cgcctgaagc agtcgtcgtc agcaccaagg gacgcgacgg
     7621 caaagaccgc atggtactga aagccgttcc tgaggattat gtgtacggga tgggcggcga
     7681 tccgttggcg ggcattcctg ccgagttgaa aaccgttccg atgacggtgt tgattaattc
     7741 cggttcggct tccgcgtcgg agattgtcgc aggtgcattg caggatcaca aacgcgcggt
     7801 catcgtcggt acgcagagct tcggcaaagg ttcggttcag actttgattc ctttgtccaa
     7861 cggcagcgcg gtcaagctga caacggcact gtattatacg ccgaacgacc gttctattca
     7921 ggcgcagggg attgttcccg atgtcgaagt aaaagataag gaacgcattt ttgaaagccg
     7981 cgaggcggat ttggtcggac acatcggcaa tcctttgggc ggcgaggatg tgaacagtga
     8041 aacccttgcc gtgccgcttg aaaaagatgc ggataagccc gctgtaaaag aaaaaggtaa
     8101 aaagaaaaag gacgaggatt tgtcttcaag gcggattccc aaccctgcca aagacgacca
     8161 gttgcggaaa gctttggatt tggtcaagtc gcccgagcag tggcagaagt ctttggggct
     8221 ggcggcgaaa aagccggttt caaataaaga taagaaagat aaaaaagata agaagtaggt
     8281 tttgacgatg ccgtctgaaa ggatttcaga cggcatatta tgtttgaaag gacaggttat
     8341 gagcgatttt ttaccggaat ttgaaccgtg cgg
//
LOCUS       DAXIFS010000077         8347 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.077, whole genome shotgun sequence.
ACCESSION   DAXIFS010000077 DAXIFS010000000
VERSION     DAXIFS010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8347
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.077"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(213..1292)
                     /gene="apbC"
                     /locus_tag="ACFOCA_001201"
     CDS             complement(213..1292)
                     /gene="apbC"
                     /locus_tag="ACFOCA_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HFC6987923.1"
                     /translation="MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHF
                     GFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVA
                     SGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIP
                     VESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGD
                     IQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICSNCG
                     HSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIARIYTDA
                     AFQIALSIADKGKDFSSRFPKIVVE"
     gene            1503..1578
                     /locus_tag="ACFOCA_001202"
     tRNA            1503..1578
                     /locus_tag="ACFOCA_001202"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1536..1538,aa:Lys,seq:ttt)
     gene            1657..2166
                     /locus_tag="ACFOCA_001203"
     CDS             1657..2166
                     /locus_tag="ACFOCA_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HFC6987924.1"
                     /translation="MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLT
                     LLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSA
                     EVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRA
                     RIFQADVFG"
     gene            2509..2949
                     /gene="nadR"
                     /locus_tag="ACFOCA_001204"
     CDS             2509..2949
                     /gene="nadR"
                     /locus_tag="ACFOCA_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family adhesin repressor NadR"
                     /protein_id="HFC6987925.1"
                     /translation="MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRL
                     LAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
                     LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS"
     gene            3064..3564
                     /gene="hpaC"
                     /locus_tag="ACFOCA_001205"
     CDS             3064..3564
                     /gene="hpaC"
                     /locus_tag="ACFOCA_001205"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042537 - benzene-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HFC6987926.1"
                     /translation="MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAP
                     VTDEPPTVMLCINRSARIIPILSENGSLCINMLADEHQDVAEHFAGLTNLSPEERFAY
                     HIWHYGKTGQPEIEGALAHLHGHIVGQHEIGTHFVFYVRLDEIKNCVGKRPALLYFRR
                     QFRSLD"
     gene            3582..4277
                     /gene="murU"
                     /locus_tag="ACFOCA_001206"
     CDS             3582..4277
                     /gene="murU"
                     /locus_tag="ACFOCA_001206"
                     /EC_number="2.7.7.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate alpha-1-phosphate
                     uridylyltransferase MurU"
                     /protein_id="HFC6987927.1"
                     /translation="MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQA
                     GFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPF
                     LVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVN
                     GGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVC
                     RLKEAQALAGAWK"
     gene            complement(4508..4939)
                     /locus_tag="ACFOCA_001207"
     CDS             complement(4508..4939)
                     /locus_tag="ACFOCA_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6987928.1"
                     /translation="MSSNAWLFWALASAGFASLTAVFAKMGLQGIDSDFATFIRTLVI
                     LAALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPID
                     KFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR"
     gene            5114..6790
                     /locus_tag="ACFOCA_001208"
     CDS             5114..6790
                     /locus_tag="ACFOCA_001208"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HFC6987929.1"
                     /translation="MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINP
                     AEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPV
                     FGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPK
                     RVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKE
                     RLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANI
                     AHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRA
                     LKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELA
                     MIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKI
                     RAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGF
                     RITVRGITVSSGAGFIVALCGNMMKMPGLPKVPAAEKIDVDAEGVIHGLF"
     gene            6904..7995
                     /gene="ychF"
                     /locus_tag="ACFOCA_001209"
     CDS             6904..7995
                     /gene="ychF"
                     /locus_tag="ACFOCA_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFC6987930.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV
                     EVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVN
                     VVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQK
                     LVDLCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPH
                     LERLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDL
                     LGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEA
                     KAKEAGKMRVEGKEYVVQDGDVMHFLFNV"
     gene            8033..>8347
                     /locus_tag="ACFOCA_001210"
     CDS             8033..>8347
                     /locus_tag="ACFOCA_001210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987931.1"
                     /translation="MPSEVGFGGFRRFHTAGMRLHQNKIPPAFPICPPRFLQNKPPAP
                     LLQKAVRHSEYPEPRYKMTFQTAFAPPRFEYSGLTLNQDKATKPQTVQIVRQGEATPY
                     WFK"
BASE COUNT         1880 a         2125 c         2412 g         1930 t
ORIGIN      
        1 tgcgcgggaa tgacggcgga gcggtttctg ttttttccga taaatgccgc aatctcaaat
       61 cccgtcattc ccacgaacct acattccgtc attcccacga aagtgggaat ccggaacgta
      121 aaatctcaaa aaaaccgttt tatccggcaa gtttgcccgc cggcaggcgc ggggcttggg
      181 acggcattgc tgttgcggtt tcggacgcgg ctttattcga cgacgatttt ggggaagcgg
      241 ctgctgaagt ctttgccttt gtcggcaatg ctcagggcga tttggaatgc ggcatcggtg
      301 tagattcggg cgatggcggg gtgttcgtcg aacagttgcg ccggtgtgcc gccgtccatg
      361 gcttcgcgca cgggcaggct taggggaagc tgtccgagca gggggacgtt gaggcgggcc
      421 gccaaatctt tgccgccgtc cgtgccgaac agtgcttcgc tatgcccgca gttggagcag
      481 atgtggacgg acatgttttc caatacgcct aaaatgggaa tgttgacctt gcggaacata
      541 tccacagcct tgcgcgcgtc tatcagggcg atgtcctgcg gcgtggttac gatgaccgat
      601 ccggttacgg ggatgcgttg ggacagcgtg agttggatgt cgcccgtgcc ggggggcagg
      661 tcgatgaaaa gataatccac ttcgtcccac tcgctttgaa acatcagttg ctgcaaggct
      721 tggctgacca tcggcccgcg ccagacgacg gcttggtcgg tatcgacgag aaagccgata
      781 gacatgacct gtatgccgtc tgaagattcg acgggaatga gtttttggtt tttctgatcg
      841 ggtttgcggt cgtccacacc caacatggtc ggttggctcg ggccgtaaag gtcggcatcg
      901 agcacgccga cgcgcgcgcc catccgcgcc attgcggcgg caaggttggc ggtggttgtt
      961 gatttgccca cgccgccttt gccggaggcg acggcaatga tgtttttcac acctttgatg
     1021 gtggtaacgc cgggctggac tttgtgtgtg ccgatttcgg tgtctatgga cagatggatg
     1081 tgtgtgtcgc ctgtcagcgg catcaggatt tcctgtatgc ggtcggctgt ttctgaggca
     1141 atgtgcgcga cggggaagcc gaaatgcagg gcgatatgga tgccgtctga acgctgttcg
     1201 accgaacgga cggccttttc gccgccgagc gtgcgtgccg tattcggaac ggcgacggtg
     1261 tcgaggaggg tgcggatgtt ttgtatgttc ataatgtgtg tttctgtgtg cagtttggga
     1321 aacgggcgga aagtgtacat tgatttcggg cggtttgctt ttccttgtgc gaacttttac
     1381 acggtatgcg gcggattgtg aaaatccgtt gtcaaaatat cccgtgcaaa cagtggtctg
     1441 caattaagcc tgtaaaattt gcttgacgag gtaggatggt gctgtataat gcacggctta
     1501 tcgggtcgtt agctcagccg gtagagcagc ggacttttaa tccgttggtc gagcgttcga
     1561 atcgctcacg acccaccaga taaccggaag ccaagttttg agacttggct ttttgtttgc
     1621 ctgccggttg cgcgggcgta ccgtttgaga gagcgtatga aaaagaaact gctttcgggc
     1681 atcaaatttg ccgttcagac ggcattggtg tttttattgg tgtcgctgtt tttggattgg
     1741 gtacgcaagc ccgacgaacc tgccggcgcg gcagggcggc ctttgaccct gctgtcgggg
     1801 cagcggctga ctttgggaca gtttagccgg gataggacgg tgctggtgta tttttgggga
     1861 agctggtgcg gcgtgtgccg ttatcagtcg ccgataatcg atgatttggc ggcggacggc
     1921 gtgccggtcg tcggcgtggc ggtacgttcc ggcagttcgg cggaagtggc ggcgtatatg
     1981 gcaaaacgcg gcttgggctt tccgactgtc aacgatgagg acgggggttt ggcaaggtct
     2041 tggcggattg tcgcaacgcc tgccgtcgtt ttggtcaaaa atgggaaaat ggttcactat
     2101 acgacgggaa tcagcagtta ttggggcttg cgcgcacgaa tttttcaggc ggatgttttc
     2161 ggttaacttt tgtttttgtt aaactttacg ctatgtagag aatcaaacgg catatacctt
     2221 gctcgtctga tgcggcggct tttgtttttt ctggaagaaa gttctttcga cagtaaatgt
     2281 aatactttgt tgagattgta gggaaaatag actaagatat aactattaaa atatttttag
     2341 ataggattat cggaattaaa gtcttttata cccagtcgtc cgatgcggtt tatagcgtat
     2401 tgttgctata tgttcgtttt gttatataac ggttgcatca aaatttacgc ccacaggctt
     2461 tcccgacggt ttgaaagttt gattttcgat aacttggaga cttgaacaat gcctacccaa
     2521 tcaaaacatg cgtctatcaa tatcagtctg atacaggcaa gggaagccct gatgacccaa
     2581 ttcaggccta ttctgaatca ggcgaatatt accgatcagc aatggcggat tatccgtctt
     2641 ttggcggaaa acggcacgct ggactttcaa gatttggcga atcaggcgtg tattctgcgc
     2701 cccagcctga ccggtatcct gacccgcctt gaaaaagcgg gtttggttgt ccgcctgaaa
     2761 ccttccaacg accaacgacg tgtttttctg aagctgactg ccgagggcga gaagctgtat
     2821 gaggaaatcg gcgaagaagt ggacgagcgt tacgacgcta tcgaggaagt gctgggccgc
     2881 gagaaaatgc tgctgcttaa agacctgttg gcagaacttg ccaaaatcga ggatgcgttg
     2941 aactcgtaat acgccgtaac gcgcggaaac gtccgaccga cggctttttg aatcagaact
     3001 gctgcacatg gggggtgcct tgtgtgcagc attcttatat aggggacagt ttaaagggga
     3061 aaaatggcgg atttgcagaa aacttttcaa acttcgttcc gtgatgcgat ggcatcttgc
     3121 gcggcaggcg ttcatgtcat cacgacagac ggtgcggcag ggcgttacgg cattacaatg
     3181 acggcggttg cgccggttac cgacgagccg ccgaccgtga tgctgtgcat caaccggagt
     3241 gcgcgaatca ttccgatcct gtcggaaaac ggcagcctct gcatcaatat gctggcggac
     3301 gaacatcagg atgttgccga acattttgcc ggattgacca atctttcacc cgaagaacgt
     3361 tttgcctatc atatttggca ttacggtaaa accggacaac ctgaaataga aggcgcgttg
     3421 gcgcatctgc acgggcatat tgtcggccaa catgaaatcg gcacacattt tgtgttttac
     3481 gtcaggctcg acgaaattaa aaattgcgtg ggcaaacgtc ccgcgctgct ttatttcaga
     3541 cggcagttta gatctttaga ctgatattcg gacagatata tatgaaagcg atgatactgg
     3601 cggcaggacg cggcgagcgt atgcgtcctt tgaccgatac cactccgaag ccgctgctcg
     3661 atgtggcggg taagcctcta atcggttggc acctatgccg tctgaagcag gcggggttta
     3721 ccgaaatcgt catcaaccac gcttggctgg gtcggcagat agaagatgct ttgggcgacg
     3781 gctcggctta tggcgtgaac atcgcctatt cgcccgaacc cgcaggcggc ttggaaacgg
     3841 caggcggcat cgcgcaggca ttgccgctgt tgggtgggca gccgtttttg gtggtcaacg
     3901 gcgacgtgct gaccgacatc gattttaccg ccgcgtttca ggcggcatcg tccctgccgg
     3961 aacatatttc cgcccatctg tggctggtgg aaaatccgcc gcacaacccc gacggcgatt
     4021 tttccctgct gcccgacggc agcgtgcggc cggaagtaaa tggcggcaac ggattgacat
     4081 tcagcggcgt gggtatttac cgtcctgaaa tgtttgacgg aatcgaagcg ggcagtgtgg
     4141 cgaaactcgc gcccgtattg cgtggcgaaa tgcggcaaaa ccgcgtgagc ggtcagaagc
     4201 atacgggctt gtggctggat gtcggcacgg tatgccgtct gaaagaggct caagcccttg
     4261 caggggcttg gaagtgaaat aaaacggtgg cttgccgagc cggctgccga acggttccga
     4321 ccggatgtcc agcatatttt cgtggaggcg tgaaaatagg gcgttcgggg ctttccgtcc
     4381 aacaaatgcc atctgaagcg cggcggtttg ccgtcggcgc ggtgtcggat tttattgggt
     4441 aactttgttc agaccgccgc ccgtcagatt gtcaaaaccc ggtttcaggc ggtatggcgg
     4501 attcggttta acgtttcaac gccagcacca acacgcccgc cgttaccagc cccaagccta
     4561 tccattcctg cgtgttcggg cgttcgtcca agaaaaccac cgccatcagc gcgaccaaga
     4621 ccaggctgaa tttgtcgatg ggggcgactt gcgaggcgtt gcccagttgc agggctttga
     4681 agtaggcgag ccaggatgcg ccggtagcaa ggccggatag gataaggaat gtccagttgc
     4741 gccccgtaaa gccgttcaca ccctgccatt tgccggtgta ggtcaaaaac aataccaaag
     4801 cggcgaggat caccaaggtg cggataaagg tggcgaaatc ggaatcgatg ccctgtaaac
     4861 ccattttggc gaaaacggcg gtcaatgagg cgaagcctgc cgatgccaat gcccaaaaca
     4921 gccatgcgtt gctgctcatg ttttctcctt ggattgtgaa caatatgaac ggtatttttg
     4981 ttgcagcgtc aaaaatttca ctgcgggttt ggtgcggata acgttataat atgcctgata
     5041 ttattttcaa tccacctgtt tgtcgcctga tgctttcaga cggcatgtcc ctcctcattt
     5101 ctaaaggaaa atcatgagct tcaaaaccga tgccgaaatc gcccaatcct ccaccatgcg
     5161 cccgattggc gaaattgccg ccaagctggg tctgaatgcc gacaacattg agccttacgg
     5221 tcattacaag gcgaaaatca atcctgccga agcgttcaaa ctgccgcaaa aacagggcag
     5281 gctgattttg gttaccgcca ttaatccgac tccggcgggc gaaggcaaaa ccaccgtaac
     5341 catcggtttg gcggacgcgt tgcgccacat cggcaaagat gccgtgattg ccctgcgcga
     5401 accttctctg gggccggtgt tcggcgtgaa aggcggcgcg gcaggcggcg gctatgccca
     5461 agttttgccg atggaagaca tcaacctgca cttcaccgga gattttcacg ccatcggtgc
     5521 ggcaaataat ctgcttgccg cgatgctcga caaccatatc tatcagggca acgagttgga
     5581 catcgacccc aaacgcgtgc tgtggcggcg cgtggtcgat atgaacgacc gccagttgcg
     5641 caacatcatc gatggcatgg gtaaacccgt tgacggtgtg atgcgccccg acggttttga
     5701 tatcaccgtt gcctccgaag tgatggcggt attctgcctt gccaaagaca tcagcgattt
     5761 gaaagagcgt ttgggcaaca tcctcgtcgc ctacgccaaa gacggcagcc ccgtttacgc
     5821 caaagatttg aaggcacacg gcgcgatggc ggtcctgctc aaagatgcga ttaagcccaa
     5881 tttggtgcaa accatcgaag gcacgcccgc cttcgtacac ggcggcccgt tcgccaacat
     5941 cgcccacggc tgcaactccg taaccgcaac ccgtctggcg aaacaccttg ccgattacgc
     6001 cgtaaccgaa gcaggcttcg gcgcggattt gggcgcggaa aaattctgcg acatcaaatg
     6061 ccgccttgcc ggtttgaaac ctgatgcggc ggtcgtcgtg gcgactgtcc gcgctttgaa
     6121 atacaacggc ggcgtggaac gtgccaacct cggtgaagaa aacctcgaag ccttggcaaa
     6181 aggtttgccc aacctgctga aacacatttc caacctgaaa aacgtattcg gactgcccgt
     6241 cgtcgttgcg ctcaaccgct tcgtgtccga ctccgatgcc gagttggcga tgattgaaaa
     6301 agcctgtgcc gaacacggcg ttgaagtttc cttgaccgaa gtgtggggca aaggcggcgt
     6361 gggcggtgca gacttggcgc gcaaagtcgt caacgccatc gaaaaccaac cgaacaactt
     6421 caatttttcc tacgatgttg agctgagtat taaagacaaa atccgtgcga ttgcccaaaa
     6481 agtgtacggc gcggaagatg ttgatttcag cgcggaagcg tctgccgaaa tcgcctcgct
     6541 ggaaaaactg ggcttggaca aaatgccgat ttgcatggcg aaaacccaat attctttgag
     6601 cgacaacgcc aaactcttgg gctgccctga aggcttccgc attaccgtgc gcggcattac
     6661 cgtttcttcc ggtgctggtt tcatcgttgc gttgtgcggc aatatgatga aaatgccggg
     6721 tctgcccaaa gttcccgccg ccgagaaaat cgacgtggac gcagaaggcg tgattcacgg
     6781 cttgttctga acggtttttg aaaccagatg ccgtctgaag ccgtttcaga cggcattttt
     6841 tcggaacgcg ggcggcggta tgctataatc cgccgttaaa tttctctatt ttcaggaaaa
     6901 aacatgagtt tgaaatgcgg catcgtcggt ttgcccaacg tcggcaaatc cacccttttt
     6961 aacgcgctga cccaatcggg tatcgaagcg gcaaactatc ctttctgtac catcgaaccc
     7021 aacgtcggca tcgtcgaagt ccccgatccg cgtatggccg aattggcaaa aatcgtcaat
     7081 ccgcaaaaaa tgcagcctgc catcgtcgaa tttgtcgata ttgccggttt ggttgcaggc
     7141 gcgagcaaag gcgagggctt gggcaaccag ttccttgcca acatccgcga aaccgatgcg
     7201 attgtgaatg tcgtgcgctg ctttgacgac gacaacatcg tccacgttgc aggccgcgtc
     7261 gatccgattg ccgacatcga aaccatcggc acagagttgg cacttgccga cctggcaagt
     7321 gtggaaaaag ccatcgtccg cgaagaaaaa cgcgcccgtt caggcgacaa agacgcgcaa
     7381 aagctggtcg atttgtgcaa aaaactgctg ccgcatctgg acgaaggcaa acccgtgcgt
     7441 tccttcggtt tggacgcgga agaacgcgcg atgctcaaac cgctgttcct gctgaccgcc
     7501 aaaccggcga tgtatgtggg caacgtcgcc gaagacggtt ttgaaaacaa tccgcacctc
     7561 gaacgcctga aagaattggc ggcaaaagaa aacgcccccg tcgtcgccgt ttgcgccgca
     7621 atggaaagcg aaatcgccga attggaagac gacgaaaaag ccgagttcct cgccgaaatg
     7681 ggcttggaag aaccgggcct gaaccgcctg atccgtgccg gctacgacct tttggggctg
     7741 caaacctact ttaccgccgg cgtgaaagaa gtccgcgctt ggacgataca caaaggcgac
     7801 accgccccgc aagccgccgg cgtgattcac accgactttg agcgcggctt catccgcgcc
     7861 caagtcattt cttacgacga ctttgtctcg ctcggcggcg aagccaaagc caaagaagcc
     7921 ggcaaaatgc gtgtggaagg caaggaatac gtcgtgcagg atggggatgt gatgcacttt
     7981 ttgtttaacg tgtaacccaa atgcggcagg ttttcagacg gctttgccga aaatgccgtc
     8041 tgaagtcggt tttggtggct ttcggcgttt ccataccgcc ggaatgcggc tgcatcaaaa
     8101 taaaatcccg cccgcatttc cgatttgccc tccccgattc ctgcaaaaca aaccgcctgc
     8161 cccgctgttg caaaaagccg tccggcattc cgaatatccc gagccccgat acaaaatgac
     8221 ctttcagacg gcatttgcgc cgccgcgttt cgagtatagt ggattaactt taaatcagga
     8281 caaggcgacg aaaccgcaga cagtacagat agtacggcaa ggcgaggcaa cgccgtactg
     8341 gtttaaa
//
LOCUS       DAXIFS010000078         8300 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.078, whole genome shotgun sequence.
ACCESSION   DAXIFS010000078 DAXIFS010000000
VERSION     DAXIFS010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8300
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.078"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(148..1080)
                     /gene="cysK"
                     /locus_tag="ACFOCA_001211"
     CDS             complement(148..1080)
                     /gene="cysK"
                     /locus_tag="ACFOCA_001211"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HFC6987932.1"
                     /translation="MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVK
                     DRIAEAMIEGAEKAGKINKNTVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKER
                     KMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTA
                     EEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGP
                     HPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSAL
                     QLAKQPENEGKLIVVLLPSYGERYLSTPLFADLA"
     gene            complement(1274..1879)
                     /locus_tag="ACFOCA_001212"
     CDS             complement(1274..1879)
                     /locus_tag="ACFOCA_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987933.1"
                     /translation="MILLHLDFLSALLYAAVFLFLIFRAGMLQWFWASIMLWLGISVL
                     GAKLMPGIWGMTRAAPLFIPHFYLTLGSIFFFIGHWNRKTDGNGWQADPEHPLLGLFA
                     VSNVSMTLAFVGICALVHYCFSGTVQVFVFAALLKLYALKPVYWFVLQFVLMAVAYVH
                     RCGIDRQPPSTFGGSQLRLGGLTAALMQVSVLVLLLSEIGR"
     gene            complement(1876..2727)
                     /gene="dapF"
                     /locus_tag="ACFOCA_001213"
     CDS             complement(1876..2727)
                     /gene="dapF"
                     /locus_tag="ACFOCA_001213"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFC6987934.1"
                     /translation="MNTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG
                     FDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVET
                     ANGVIFPKLSDNGMVTVNMGKPRFMPSEIPFVPELGEGDDACIYGVHLESGIQPVSCV
                     NMGNPHAVIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGV
                     GETQACGTGACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVF
                     EGELAYS"
     gene            2864..3160
                     /locus_tag="ACFOCA_001214"
     CDS             2864..3160
                     /locus_tag="ACFOCA_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987935.1"
                     /translation="MFRILLLLFPCAILAACTRNIPANPAVSNCAHLQNRTILYFDAH
                     GKPADGAVKGGFYKIIEIQGANRILIQDFNSTGNALGGSYVPDCRKSSLFPKNI"
     gene            3174..3842
                     /locus_tag="ACFOCA_001215"
     CDS             3174..3842
                     /locus_tag="ACFOCA_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6987936.1"
                     /translation="MNHDITFLTLFLLGFFGGTHCIGMCGGLSSAFALQLPPHINRFW
                     LILLLNTGRVSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGI
                     SSLAAKIEKIGKPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALG
                     SGSAATGGLYMLAFALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKLA
                     VLWL"
     gene            complement(3914..6037)
                     /gene="pnp"
                     /locus_tag="ACFOCA_001216"
     CDS             complement(3914..6037)
                     /gene="pnp"
                     /locus_tag="ACFOCA_001216"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFC6987937.1"
                     /translation="MMFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVA
                     VTTNKEVKEGQDFFPLAVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRP
                     LFPEGFYHDIQIVAMVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYING
                     VYVLNPTKAELAKSQLDLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAIN
                     AINEFADEVNPEVWDWKAPETNEELVAKVRRIAGETIKEAFKIRQKQARSAKLDEAWN
                     AVKEALITEETDTLAANEIKGIFKRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTG
                     VLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEV
                     GRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCL
                     SLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQ
                     MDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGPQELSAHAPRLFTMKINQDKI
                     REVIGKGGETIRSITAETGTEINIAEDGTITIAATTQEAGDAAKKRIEQITAEVEVGK
                     VYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEV
                     DDRGRVRLSIKALLDAPAREENAAE"
     gene            complement(6271..7134)
                     /locus_tag="ACFOCA_001217"
     CDS             complement(6271..7134)
                     /locus_tag="ACFOCA_001217"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFC6987938.1"
                     /translation="MSEIGLVKIYFGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPI
                     PSKGEILTQISNFWFKKLVHIMPNHFTGQTVYDVLPENEAKALEKRAVVAKKLTPVKV
                     EAIVRGYLAGSGWKDYQKTGSVCGIQLPEGMQEAQQLPEVIFTPSTKAAVGDHDENIS
                     FEECERIIGKELAAEVRAKAIQLYTEAAEYAKSRGIIICDTKFEFGLDTNGTLTLMDE
                     VLTPDSSRFWPADQYKVGTNPPSFDKQFVRDWLEQSGWNKKAPAPKVPANVIQKTVEK
                     YQEALTLLTQD"
     gene            7333..8196
                     /gene="rfbD"
                     /locus_tag="ACFOCA_001218"
     CDS             7333..8196
                     /gene="rfbD"
                     /locus_tag="ACFOCA_001218"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HFC6987939.1"
                     /translation="MRILLTGSKSQLARCLRDRLPEDWETIATDSASLDITDADAVCN
                     MVKSFQPDAIVNTAAYTAVDKAEGNAAAAFAVNASAVYNLALAAHRAHARFIHISTDY
                     IFDGKGKRPYQESDFTNPSNVYGQSKTAGELLALSANPDSLILRTSWLFSEYGDNFVR
                     TMLNLARERSPLSAVHNQIGCPTYAGDLAAAIIRLLQQTSPVRGIYHYAGGKSVSWYE
                     FAQHIFQAASQQQTSFPVPELTAVSDKEYPTAAPRPAYSILDCRKIENDFSIKPSDWQ
                     KALAQVVSKLL"
BASE COUNT         1983 a         2397 c         1922 g         1998 t
ORIGIN      
        1 tatttccctc aagcgatgtg gcggcaccaa cacctgatta aaacacaacc ggcgttttcg
       61 gcatatacgc aaaaacgcat tttccggcac ggcgttacac cgataccgaa aaatgcgtct
      121 gaatgtttcg acaatccgat taaagcatta tgccaaatct gcaaaaagtg gcgtagagag
      181 atagcgttcg ccataagaag gcagcagcac gactatcagc ttgccttcgt tttcaggctg
      241 tttggcaagc tgcaacgcac tccaaaccgc cgcaccggaa gaaataccca ccaaaatgcc
      301 ttctttttcc gctattgcgc gggcggtttc aaaagccgct tcgttcgaca ctttggtaat
      361 gctgtcgtaa attttggtat tcaaaacggt cggaataaag cctgcgccga tgccttgaat
      421 cgggtgcggg cctttttcgc cgccgctcaa tacgggtgaa gcttcaggct cgacggcaac
      481 cactttaact tcgggtttgt attttttcaa cacttcgccc acgccggtaa tcgtaccgcc
      541 cgtgccgacg ccggcaacga agacatcgac tttgccgtcc gtatcccgcc aaatttcctc
      601 ggcggttgtt ttgcggtgga cttcggggtt tgcctcattg tcgaactggc gcggcataaa
      661 ataagtgtcg ggatgcgcgt ccaccaagga tttcgctttg gcaatcgcgc ccgccatacc
      721 ttcggcggca ggggtcagaa tcagctccgc accaaacgcg cgcaacagca ttttgcgctc
      781 cttactcatg ctttccggca tggtaatcgc cagcttgtag ccgcgtgcgg cacataccat
      841 tgccaaaccg acacccgtat tgccgctggt tgcttcgaca atgacggtgt ttttgttgat
      901 tttgcccgct ttttcggcac cctcgatcat tgcttcggca atgcggtctt tgacgctgct
      961 gcctggattg aaaaattcca gtttcacggc aacctccgcc ttcaaacctt cggtcagacg
     1021 gttcagtttg accaaaggcg tgttgccgat tagttcggtg atgctgtttg caattttcat
     1081 cttctgctcc tgaataataa ggtttcgaca gtaaggcgca atccccatag gcatcctgtc
     1141 cgattgcagg ggatttgcgc cgaaacataa acaaatttcg gatatggctt tatcctaaac
     1201 ctatgccgcc taaaaaacca atatccaaaa tttctttctt tataactttt tgttccgata
     1261 cggccgcacc gtattatctt ccaatttctg aaagcagcag caccagtacc gagacctgca
     1321 tcaacgctgc cgtcaacccg ccgagtcgca gctgcgagcc gccgaacgtt gacggcggct
     1381 gccggtctat accgcagcgg tggacatagg caaccgccat cagcacaaac tgcaacacga
     1441 accaataaac cggcttcagc gcataaagtt tgagcagtgc cgcaaacaca aacacttgaa
     1501 ccgttcccga aaagcaataa tgcaccaacg cacatattcc gacaaaagca agcgtcatcg
     1561 atacattact gacggcaaac agcccgagca gcggatgttc ggggtctgcc tgccatccgt
     1621 ttccatccgt tttccggttc caatgcccga tgaaaaaaaa tatgctgccc aaagtcaggt
     1681 aaaaatgggg gatgaacaag ggcgcggcgc gggtcattcc ccatatgccg ggcatcagct
     1741 ttgcccccaa aaccgatatg cccagccaca gcataatact cgcccaaaac cattgcaaca
     1801 ttcctgcgcg gaatatcaga aacagaaaaa ccgccgcata cagtaaggca gacaaaaaat
     1861 ccaaatgcag caaaatcatg aatacgccaa ctcgccttca aacaccgctt ccgcagggcc
     1921 ggtcatcatc acatcgccgc cgcaggccca ttcgatatat aaagtcccgc ccggcaaaat
     1981 cacctctacc gttttccctt catccaacaa ccccagacgg atacccgcca ccacagccgc
     2041 acacgcgccc gtaccgcacg cttgggtttc gcccacgccg cgctcgaaca cgcgcaaacg
     2101 aatcgcggtt cggctgacaa tctgcataaa gccgacgttg acgcgttcgg gaaactgcct
     2161 gtgcggttcg ataagcgaac cggtttcgcg caccggcgcg cattctacgt catcgaccac
     2221 aatcaccgca tgggggttgc ccatattgac gcagctgaca ggctgaatgc cggattcgag
     2281 atgcaccccg taaatacagg catcatcccc ctcgcccaat tcggggacaa acggtatttc
     2341 agacggcata aacctcggtt tgcccatatt gaccgtaacc atgccgttat cggacaattt
     2401 cggaaaaata acgccatttg ccgtttcaac acaaatttct ttcttatcgg tcaaaccctt
     2461 gtctgcaaca aaacgggcaa aacaacgcgc tccgttgccg cattgcccga cctcgctgcc
     2521 gtcggcattg aaaatacggt aacggaaatc cacgccttcg gtttccgaac gcccgaccac
     2581 caaaagctgg tcgaagccca cgcctcggaa gcggtccgcc catgccgcaa tcggcgcgtc
     2641 ctcgggggta aaatcctgac tgaccgcgtc aatcaccata aaatcgttgc ccaaaccgtg
     2701 cattttggta aatttcaacg tgttcatatt gttccgaaat cccgtatcgt ctgttgcttc
     2761 cgaatccgaa atcccccgca ccgaagggaa atgcttccat ctcccgccgc ctgaggatta
     2821 aaatcagcca ttatactgtt tgttacccct tacaagaaac accatgttcc gcatattact
     2881 gttgcttttc ccttgtgcaa tccttgccgc ctgcacccga aacataccgg caaacccggc
     2941 cgtttcaaat tgcgcgcatc ttcaaaaccg caccatcctg tattttgacg cacacggcaa
     3001 acccgccgac ggcgcagtaa agggcggatt ttacaaaatt atcgaaatac agggtgcaaa
     3061 ccgcatcctt attcaagact ttaacagcac gggcaatgcc ctcggcggat cctatgtgcc
     3121 ggactgccgc aaatcatccc ttttcccgaa aaatatttga cttcaaactg cctatgaacc
     3181 acgacatcac tttcctcacc ctgttcctac tcggtttctt cggcggaacg cactgcatcg
     3241 gtatgtgcgg cggattaagc agcgcgtttg cgctccaact ccccccgcat atcaaccgct
     3301 tttggctgat cctgctgctt aacacaggac gggtaagcag ctatacggca atcggcctga
     3361 tactcggatt aatcggacag gtcggcgttt cactcgacca aacccgcgtc ctgcagaata
     3421 ttttatacac agccgccaac ctcctgctgc tctttttagg cttatacttg agcggtattt
     3481 cttccttggc ggcaaaaatc gagaaaatcg gcaaaccgat atggcggaac ctgaacccga
     3541 tactcaaccg gctgttaccc ataaaatcca tacccgcctg ccttgcggtc ggaatattat
     3601 ggggctggct gccgtgcgga ctggtttaca gcgcgtcgct ttacgcgctg ggaagcggta
     3661 gtgcggcaac gggcgggtta tatatgcttg cctttgcact gggtacgctg cccaatcttt
     3721 tggcaatcgg cattttttcc ctgcaactga aaaaaatcat gcaaaaccga tatatccgcc
     3781 tgtgtacggg attatccgta tcattatggg cattatggaa acttgccgtc ctgtggctgt
     3841 aagccccatt cattcccgat acccgtaaaa ataccgtctg aaacctgttc agacggcact
     3901 ttcaccctaa gcgttactcg gcggcatttt cctcacgggc aggcgcgtcc agcagggctt
     3961 tgatggacag acggacacgg cctctgtcgt ccacttccaa tgctttcacg ttcaccacct
     4021 gaccgacttg caggtagtcg ccgacattgc gtacgcgctc gtgggcgatt tggctgatgt
     4081 gtaccaaacc gtctttgccc ggcatcacgc tgacaatcgc gccgacattg ttgtcgagga
     4141 ttttcaccac agtgccttcg tacactttgc ccacttccac ttcggcagta atctgctcga
     4201 tgcgtttttt cgccgcatcg ccggcttctt gagtggttgc ggcaatggta atcgtaccgt
     4261 cttcggcaat attgatttcc gtaccggttt cagcggtaat cgaacggatg gtttcaccgc
     4321 ccttaccgat aacttcgcgg attttgtctt ggttgatttt catcgtgaac aagcgtggcg
     4381 cgtgtgcgga cagctcttgc gggcccgcaa cggcggcttt catctgatcc aagatgtgca
     4441 gacgcgcttc tttggcctgt gccaaagcga tttgcataat ttctttggta atgccttgga
     4501 ttttgatgtc catttgcagc gcggtaacgc cttcggtcgt accggccact ttaaagtcca
     4561 tatcgcccaa gtggtcttcg tcgcccaaaa tgtcggtcag gacggcaaat ttgttgcctt
     4621 ccagaatcag acccatcgcg ataccggcaa cgtgtgcttt caaaggcacg ccggcagaca
     4681 gcaggctcag gcagccgccg cagacggaag ccatagagga agagccgttg gattcggtaa
     4741 tttcggagac cacgcgcatg gtgtagctga aatcttcagg tttcggcaat acggccaaca
     4801 atgcacgttt agccaaacgg ccgtgaccga tttcacggcg tttcggtgcg cccatgcggc
     4861 ccacttcgcc ggtagagtac ggcggaaagt tgtagtgcag cataaagcgg tcggtatatt
     4921 cgccggacaa cgcgtcgatg atttgttcgt cgcgcgaagt acccaaagtc gctacggcaa
     4981 gggcttgggt ttcgccacgg gtaaacagtg cggaaccgtg cgtgcgcggc aatacgccgg
     5041 tttggatgtt cagcggacgg acggtgcggg tgtcgcggcc gtcgatgcgc ggttgtccgt
     5101 ccaaaatttg gctgcggacg acatcggctt ccaagcgttt gaaaatacct ttgatttcgt
     5161 tggctgccag cgtgtcggtt tcttcggtaa tcaaggcttc ttttaccgca ttccaagcct
     5221 cgtccaattt ggcggaacgc gcttgttttt gacggatttt gaacgcttct ttaatggttt
     5281 cgccggcaat cctgcgtact ttggcaacca gttcttcatt ggtttcaggt gctttccaat
     5341 cccaaacttc cggattcact tcgtcggcaa attcattgat tgcattgatg gcaacctgca
     5401 tttgatcgtg gccgtaaacc accgcgccca acatcacgtc ttcgggcagg attttggctt
     5461 cggattccac catcaacacg gctttggaag taccggcgac caccaagtcc aattgtgatt
     5521 tcgccaactc ggctttagtc gggttcaaaa cgtacacgcc gtttatataa cccacgcgcg
     5581 ccgcgccaat cgggccggcg aacggtacgc cgctcaacac cagcgcggcg gacgcgccca
     5641 acattgcagg aatgtcggaa tcgatttcgg gatcgacgga cacaaccatc gctacgattt
     5701 ggatgtcgtg gtagaaacct tcggggaaca gcggacgaat cgggcggtcg atcagacggc
     5761 tggtcaggat ttctttttcg ctttgtttgc cttcgcgttt gaagaagccg ccggggattt
     5821 tgcctgcggc ataagtgcgt tccaaataat cgacggccaa cgggaagaag tcctgacctt
     5881 ctttgacctc tttgttggtg gtaacggcaa caaaaacaac agtgtcgccc atcgatactt
     5941 taacggcagc ggcagcttgg cgggcaattt cgccggtttc caaagtaacg gtttgattac
     6001 cgtattggaa ggtcttaacg tatttattga acatcattgt tcctttcaaa ataccgcact
     6061 gctaaaacac taataatgca cactaaaatc cgaatgtgca tagttagggt ttcagaccgt
     6121 gcggcaggtt ataaacaagc tttcagacgg cactccggac gctgaaaaca gcccccgatt
     6181 ataaaggcaa ccatccttaa aatccagtat tgatacaata aaaaggccgt ctgaaccata
     6241 tttctttcag acggccttca aacttaaaaa tcaatcctga gtcagcaaag tcaatgcttc
     6301 ctgatatttt tcgactgttt tttgaatcac attggcaggc actttaggcg caggggcttt
     6361 tttgttccaa ccgctttgtt ccagccagtc gcggacaaat tgtttgtcaa aagacggcgg
     6421 atttgtgccg actttatatt ggtcggcagg ccagaagcgg ctcgaatcgg gggtcaatac
     6481 ctcatccatc agcgtcagcg taccgtttgt atccaaaccg aattcaaatt tggtatcgca
     6541 aatgatgatg ccgcgcgatt tggcatattc cgccgcttct gtataaagct gaatcgcttt
     6601 ggcgcgcact tccgccgcca attcttttcc gataatgcgt tcgcattctt caaagctgat
     6661 gttttcatcg tgatcgccga ctgcggcttt ggttgagggc gtaaaaatca cttcaggcag
     6721 ttgttgcgct tcctgcatac cttcaggcag ttgaataccg caaaccgagc cggttttttg
     6781 ataatctttc caaccgctgc ctgccagata accacgcaca atcgcctcta ctttcaccgg
     6841 agtgagcttt ttagccacga cggcgcgttt ctctaaagct ttggcttcgt tttcaggcaa
     6901 aacatcgtaa accgtttgac cggtaaagtg gttgggcata atatgcacca gttttttaaa
     6961 ccaaaaattg gaaatctgcg tcagaatctc ccctttgctc ggaatcgggt cgtccaaaat
     7021 cacatcgaat gcagacaggc ggtcggaagc gaccatcagc atacgtttat cgtcgatttc
     7081 atataaatcg cgcacttttc caaaatagat ctttaccaaa ccaatctcac tcatttcgcc
     7141 ccccctgaaa atatcttgaa aataccgacc cgacacccga caggtttgaa tcacaaacca
     7201 atattctagc cgaagtcggc gcaaaacaat acccatggca caaaaaacca acccgtcaac
     7261 cgtcggcaaa gttttggcac tataataccg acagcaagtc ctacaataca cttttaccaa
     7321 aggaaatacc tcatgagaat cctattgaca ggctcgaaaa gccaactggc acgctgcctg
     7381 cgcgaccgtc ttccggaaga ctgggaaacc attgcgacgg attccgcatc cctagacatt
     7441 accgatgccg atgccgtctg caacatggtc aaaagtttcc aacccgacgc tattgtcaac
     7501 acggctgcct atactgccgt cgacaaagcg gaaggcaatg cggcagcggc atttgccgtc
     7561 aatgcttccg ccgtttacaa ccttgccttg gcagcacatc gcgcccatgc ccgattcatc
     7621 cacatctcaa ccgactatat ctttgacggt aaagggaaaa ggccctatca ggaaagcgac
     7681 tttaccaatc cttccaatgt atacggacaa tccaaaaccg caggcgagct gctcgcactg
     7741 tctgccaatc ccgacagcct tatcctgcgg acttcttggc tgtttagcga atacggggac
     7801 aactttgtcc gcacgatgct gaaccttgcg cgggaacgtt ccccgctgtc cgccgtccac
     7861 aaccaaatcg gctgcccgac ctatgccggc gatttagctg ccgccatcat ccgccttttg
     7921 cagcaaacgt cgcccgtgcg cggcatttac cactacgccg gcggcaaatc cgtatcctgg
     7981 tacgaatttg cccaacatat tttccaagcg gcatcgcaac agcagacatc cttccccgtt
     8041 cccgaattga ctgccgtttc agacaaggaa tatccgaccg ccgcccccag gcccgcatac
     8101 agcattttgg actgccgcaa aatcgaaaac gacttcagca tcaaaccgtc agactggcaa
     8161 aaagcccttg cacaggtcgt ttccaagctg ctctgatgcc gcccgcctct ccgtttccgc
     8221 cgtcaagcac cgccttggcg gttttcttat atagtggatt aacaaaaacc agtacggcgt
     8281 tgcctcgcct tgccgtacta
//
LOCUS       DAXIFS010000079         8290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.079, whole genome shotgun sequence.
ACCESSION   DAXIFS010000079 DAXIFS010000000
VERSION     DAXIFS010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.079"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            128..2713
                     /gene="acnB"
                     /locus_tag="ACFOCA_001219"
     CDS             128..2713
                     /gene="acnB"
                     /locus_tag="ACFOCA_001219"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFC6987940.1"
                     /translation="MLEAYRKAAAERAALGIPALPLNAQQTADLVELLKSPPAGEGEF
                     LVELLAHRVPPGVDDAAKVKASFLAAVAEGSASSPLISPEYATELLGTMLGGYNIHTL
                     IELLDDDKLAPIAAKGLKHTLLMFDSFHDVQEKAEKGNKYAQEVLQSWADAEWFTSRA
                     KVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKPGEVG
                     PIKLLEELKAKGHPVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGG
                     KIAPIFFNTQEDSGALPIEVDVSALKMGDVVDILPYEGKIVKNGETVAEFELKSQVLL
                     DEVQAGGRINLIIGRGLTAKAREALKLPASTAFRLPQAPAESKAGFTLAQKMVGRACG
                     LPEGQGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAAYP
                     KPVDVKTHKELPAFISTRGGVSLRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIGIS
                     FPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTV
                     AKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSN
                     VVLMKNMIADGYQDPRTLERRIKAMEKWLANPELLEADKDAEYAAVIEINMDDIKEPI
                     IACPNDPDDVCFMSERSGTKIDEVFIGSCMTNIGHFRAASKLLEGKADTPVRLWIAPP
                     TKMDAKQLSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
                     KNTFVYLGSAELAAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA
                     ETVNV"
     gene            2855..3850
                     /locus_tag="ACFOCA_001220"
     CDS             2855..3850
                     /locus_tag="ACFOCA_001220"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFC6987941.1"
                     /translation="MNLKNRHFLKLLDFTPEEITAYLDLAAELKAAKKAGREIQRMKG
                     KNIALIFEKTSTRTRCAFEVAARDQGAGVTYLEPSASQIGHKESIKDTARVLGRMYDG
                     IEYRGFAQETVEELTKYAGVPVFNGLTNEFHPTQMLADALTMREHSGKPLNQTAFAYV
                     GDARYNMGNSLLILGAKLGMDVRIGAPQSLWPSEGIIAAAHAAAKETGAKITLTENAH
                     EAVKNVDFIHTDVWVSMGEPKEVWQERIDLLKDYRVTPELMAASGNPQVKFMHCLPAF
                     HNRETKVGEWIYETFGLNGVEVTEEVFESPASIVFDQAENRMHTIKAVMVAALGD"
     gene            complement(4074..5087)
                     /gene="ilvC"
                     /locus_tag="ACFOCA_001221"
     CDS             complement(4074..5087)
                     /gene="ilvC"
                     /locus_tag="ACFOCA_001221"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFC6987942.1"
                     /translation="MQVYYDKDADLSLIKGKTVAIIGYGSQGHAHAANLKDSGVNVVI
                     GLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVYHAEVTANLKEGATL
                     AFAHGFNVHYNQIVPRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIAVYQDNSGKAK
                     DIALSYAAANGGTKGGVIETTFREETETDLFGEQAVLCGGVVELIKAGFETLTEAGYA
                     PEMAYFECLHEMKLIVDLIFEGGIANMNYSISNNAEYGEYVTGPEVVNASSKEAMRNA
                     LKRIQTGEYAKMFIQEGNVNYASMTARRRLNADHQVEKVGAQLRAMMPWITANKLVDQ
                     DKN"
     gene            complement(5167..5460)
                     /locus_tag="ACFOCA_001222"
     CDS             complement(5167..5460)
                     /locus_tag="ACFOCA_001222"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HFC6987943.1"
                     /translation="MSNIKIVALVTVKPEYTETLVAQFKELVKASRAEEGNISYDLHQ
                     EIGKPNRFVFVENWKSQAAIDEHNASAHFQAFVQSVDGKTEALEIVLMNEVAA"
     gene            complement(5527..6018)
                     /gene="ilvN"
                     /locus_tag="ACFOCA_001223"
     CDS             complement(5527..6018)
                     /gene="ilvN"
                     /locus_tag="ACFOCA_001223"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFC6987944.1"
                     /translation="MRHILSVLIENESGAMSRVVGLFSARDYNIDSLAVAPTEDKTLS
                     RMTIVTHGDEQVIEQITKQLNKLIEVIKVVDLNESRFVERELMLVKVRAAGKDRDEFL
                     RLTEIYRGSIIDVTDRSYTIEITGSTDKLDSFLETVGRAQILETVRTGAAGIGRGERI
                     LKI"
     gene            complement(6029..7756)
                     /gene="ilvB"
                     /locus_tag="ACFOCA_001224"
     CDS             complement(6029..7756)
                     /gene="ilvB"
                     /locus_tag="ACFOCA_001224"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HFC6987945.1"
                     /translation="MQLSGAQIIVQSLKAEGVEYVFGYPGGAVIEIYDALFQLNKFKH
                     ILTRHEQAAVHAADAYARVSGKVGVALVTSGPGVTNALTGIATAYTDSIPMVVISGQV
                     GNSLIGTDAFQEVDTVGITRPCVKHNFLVTDINELAETIKKAFQIAASGRPGPVVVDV
                     PKDVTQAMAKFSYPQEDIFIRSYQPVVQGHIGQIKKAVQMLASAKRPVVYFGGGVVLG
                     NASEELTRFVRMTGAPCTGTLMGLGAYPSGDRQFLGMLGMHGTYEANLAMQNADVVLA
                     VGARFDDRVVSVPSKFFEKAKKVIHIDVDPSSIAKRVKVDIPIVGDVKNVLSEMVALW
                     QKQEFMPSEDALGKWWKTIEEWRSQDCLWFDNGSEIIKPQYVIQKLAEITGNSAIITS
                     DVGQHQMFAAQYYPFERPRQWLNSGGLGTMGVGLPYAIGAKLAAPDQDVFCITGDGSI
                     QMNIQELSTCFQYRIPVNVITLNNGYLGMVRQWQEIYYGGRESETYFDSLPDFVKLAE
                     AYGHIGIRVDKKSDVEGALLEALNQKDRLVFIDFLTDQKQNVMPMVGNGKGLDEMVLP
                     PHMRADEKA"
BASE COUNT         2091 a         2242 c         2026 g         1931 t
ORIGIN      
        1 attacctgtc ataacagttc catttttgtt aaaactagtc tatgatagcg gtacaaatat
       61 tgtttacaat atttaacgca aatcatttgc aacccgacaa aagaaaaaca gaaaaaggaa
      121 caaagagatg ttagaagcct atcgtaaagc cgccgccgag cgcgccgccc tcggcattcc
      181 cgccctccct ttgaacgcgc agcaaaccgc cgatttggtt gagctgctga aaagcccgcc
      241 cgcaggcgaa ggcgagttct tggtcgaact gcttgcccac cgtgttccgc ccggtgtgga
      301 cgatgccgcc aaagtcaaag cctcattcct ggctgccgtt gccgaaggca gcgcgtccag
      361 cccgctgatc tcccccgaat atgcgaccga actcttaggt acgatgctcg gcggttacaa
      421 tatccacacc ttaatcgaac tcttggacga cgacaaactc gcgcccattg ccgccaaagg
      481 cttgaaacat acgcttctga tgttcgattc cttccacgac gttcaggaaa aagccgaaaa
      541 aggcaacaaa tacgcgcaag aagttttgca atcttgggca gatgccgaat ggtttacctc
      601 acgcgccaaa gttcccgaaa aaatcaccgt taccgttttc aaagttgacg gcgaaaccaa
      661 tacagacgac ctctcccccg cgcccgacgc gtggagtcgt cccgatattc cgctgcacgc
      721 gctggccatg ctgaaaaacc cgcgcgacgg catcacgccc gacaaaccgg gcgaagtcgg
      781 tccgattaaa ttgttggaag aactcaaagc caaaggccat ccggttgctt acgtcggcga
      841 cgtggtcggt actggttctt cacgcaaatc cgcgaccaac tccgtcattt ggcataccgg
      901 cgaagacatt ccgttcgtgc cgaacaaacg cttcggcggc gtgtgcttgg gcggcaaaat
      961 cgcgccgatt ttcttcaata cccaagaaga ctccggcgcg ctgccgattg aagtcgatgt
     1021 ttccgctcta aaaatgggcg atgtcgtcga tatcctgcct tatgaaggca aaatcgtgaa
     1081 aaacggcgag actgttgccg agtttgaatt gaaatcacaa gtattgctgg acgaagtgca
     1141 agccggcggc cgtatcaacc tgattatcgg ccgaggtctg accgccaaag cgcgcgaagc
     1201 cctgaaactg cctgcctcta ctgcattccg cctgccgcaa gcgcctgccg aaagcaaagc
     1261 cggtttcacc ttggcgcaaa aaatggtcgg ccgcgcctgc ggtcttcccg aaggacaagg
     1321 cgtgcgtccg ggtacttact gcgaaccgcg tatgacgacg gtcggctcgc aagacacgac
     1381 cggcccgatg acccgcgacg agttgaaaga cttggcttgt ttgggcttct ccgccgatat
     1441 ggtgatgcag tctttctgcc acaccgccgc ctatccgaaa cctgtcgatg taaaaaccca
     1501 taaagaactg cccgccttta tttccacccg tggcggcgtg tccctgcgtc cgggcgacgg
     1561 cgtcatccac tcgtggctca accgcctgct gctgcccgat accgtcggca ccggcggcga
     1621 cagccacacc cgtttcccca tcggtatttc cttccccgcc ggctctggct tggttgcctt
     1681 tgccgccgca acaggcgtaa tgccgctcga tatgcccgag tctgtattgg tacgcttcag
     1741 cggcaaactg caaccgggtg taaccctgcg cgatttggtg aacgccattc cgctgtacgc
     1801 aatcaaacaa ggtttgctga ccgttgccaa agccggtaag aaaaacatct tctccggccg
     1861 catcctcgaa atcgaaggcc tgcctgattt gaaagtggaa caagcctttg aattgaccga
     1921 cgcatccgcc gaacgctccg ccgccggctg taccgtgaag ctcaacaaag agccgattat
     1981 cgagtacatg aaatccaacg tcgtgttgat gaaaaacatg attgccgacg gctatcaaga
     2041 cccgcgtact ttggaacgcc gcatcaaagc catggaaaaa tggctggcaa atcccgagtt
     2101 gctcgaagcg gataaagatg ccgaatacgc cgccgtgatt gaaatcaaca tggacgacat
     2161 caaagagccg attatcgcct gcccgaacga cccggacgac gtgtgcttca tgtccgaacg
     2221 ctccggcacc aaaatcgacg aagtattcat cggttcgtgt atgaccaaca tcggccactt
     2281 ccgcgccgcc tccaaacttt tggaaggcaa ggcagacacc cccgtccgcc tgtggattgc
     2341 gccgccgacc aaaatggacg cgaaacaatt gtccgacgaa ggacactacg gcgtactcgg
     2401 acgtgccggc gcgcgtatgg aaatgccggg ttgctcctta tgtatgggta atcaggcgca
     2461 agtacgcgaa ggtgcgaccg ttatgtccac ctccacccgc aactttccga accgtttggg
     2521 taaaaacacc tttgtttacc tcggttcggc ggaattggca gcgatttgct ccaaactggg
     2581 taaaatcccg accgttgaag aatatcaagc caatatcggc atcatcaacg aacagggcga
     2641 taaaatctac cgctatatga acttcaacga aatcgacagc tacaacgaag tagccgagac
     2701 cgtgaacgtt taatccccgt catccgtatg aagtaaggga ttgaccgcaa tgccgtctga
     2761 acaaccttca gacggcattg caacattccg ctaacccttc tttccgcaaa cgctgcaaat
     2821 acggcgttca cgcccccaca taaaggaaac gacagtgaac ctgaaaaacc gccattttct
     2881 gaaactttta gacttcacgc cagaagaaat caccgcctac ctcgaccttg ccgccgaatt
     2941 gaaagccgcc aaaaaagcag ggcgcgagat tcagcggatg aaagggaaaa acatcgccct
     3001 gatttttgaa aaaacctcta ctcggacgcg ctgcgcgttt gaagtcgccg cgcgcgatca
     3061 aggcgcggga gtgacttatt tagagccgtc cgccagccaa atcgggcata aggaaagcat
     3121 caaagacacc gcccgcgtgt tgggcaggat gtacgacggc atcgaatatc gcggcttcgc
     3181 tcaggaaact gtcgaagaat tgacgaaata cgcgggcgta cccgtgttca acgggctgac
     3241 caacgagttc catcccacac aaatgcttgc cgacgcactg actatgcgcg aacacagcgg
     3301 caaacctttg aaccaaaccg cgtttgccta cgtcggcgac gcgcgttaca acatgggcaa
     3361 ttccctgctg attttagggg caaaattggg gatggacgtg cgtatcggcg caccgcaaag
     3421 cctgtggccg tctgaaggca ttattgccgc cgcacacgcc gccgccaaag aaaccggcgc
     3481 aaaaattacc ctgaccgaaa acgcgcatga agccgtgaag aatgttgatt ttattcatac
     3541 cgatgtgtgg gtcagcatgg gcgagccgaa agaagtctgg caggaacgca tcgatttgct
     3601 gaaagattac cgcgttacgc ccgaactgat ggcggcatcg ggcaatccgc aagtcaaatt
     3661 catgcactgc ctgcccgcct tccacaaccg cgaaaccaaa gtcggcgaat ggatttacga
     3721 aaccttcggg ctgaacggtg tggaagttac agaagaagta ttcgaaagcc ccgccagcat
     3781 cgtgttcgat caggcggaaa accgtatgca cacgattaaa gcggtaatgg tcgcggcttt
     3841 gggcgactga cagaactgtg cctgtttaaa ttcatccgca acacagatac cgtctgaaca
     3901 cgatgttcag acggtatcca tatatagtgg attaaattta aaccagtacg gcgttgcctc
     3961 gccttgccgt actatttgta ctgtctgcgg cttcgtcgcc ttgtcctgat ttttgttaat
     4021 ccactataaa aaaactgcct acacgatgtg taggcagtcc cgtttgaaaa caatcagttt
     4081 ttgtcttggt caaccaattt gttggcagta atccaaggca tcatggcacg cagttgtgcg
     4141 ccgacttttt caacttggtg gtcggcattc agacggcggc gggcagtcat agacgcgtag
     4201 ttgacattac cctcttggat aaacattttt gcgtattcgc cggtttgaat gcgtttcagg
     4261 gcattgcgca tggcttcttt gctggaagca ttgaccactt cagggccggt aacgtattcg
     4321 ccgtactccg cattgttgga aatggagtag ttcatattgg caataccgcc ttcgaaaatc
     4381 aggtcaacaa tcagtttcat ttcgtgcaga cattcgaagt aagccatttc aggcgcgtaa
     4441 ccggcttcgg tcagggtttc aaaacccgcc ttgatcaact cgaccacgcc gccgcacaat
     4501 acggcttgtt cgccaaacag atcggtttcg gtttcttcgc ggaaagtggt ttcaatcaca
     4561 ccgcctttgg tgccgccgtt ggcagccgca taagacaggg cgatgtcttt ggctttgccg
     4621 gaattgtctt ggtaaacggc aatcagagaa ggcacgccgc cgccgcgttt gtattcactg
     4681 cgtacggtat gacccggacc tttgggggca accataatca cgtccaagtc ggcacgcgga
     4741 acgatttggt tgtagtgcac gttgaagccg tgtgcaaatg ccagcgttgc gccttctttc
     4801 aaattggctg taacttcggc gtgatagacg gcaggcatgg tttcgtcagg cagcagcagc
     4861 ataacgacat cggcttcttt ggtcgcttca gcaacggttt tgacgacatg gccggctgct
     4921 tcggcttttt tccaagaaga accttggcgc agaccgatca ccacgtttac acccgaatct
     4981 ttcaggttgg cagcatgggc atgaccttgc gaaccgtaac cgatgatggc aacggttttg
     5041 cctttgatta gggacagatc ggcatcttta tcgtaataga cttgcatttg atttccttta
     5101 aggtaaatgg ttgtcgaagc cttaaaatgt tgagcggctt cagacgggtt aaacagagtg
     5161 tgccgcttaa gcggcaactt cattcatcaa tacgatttcc aacgcttcgg ttttgccgtc
     5221 gacggactgg acgaaggctt ggaaatgcgc gctggcgtta tgttcgtcaa tagctgcttg
     5281 ggatttccaa ttttccacga aaacaaaacg gttcggttta ccgatttcct gatggagatc
     5341 gtagctgatg ttgccctctt ctgcacggct ggctttgacc agttctttaa actgtgctac
     5401 cagtgtttct gtgtattccg gtttgacggt aaccagtgcg acaattttaa tgttcgacat
     5461 aaatctctcc tgccgttcgt ttttcagacg gcattcaaat accgtgccgt ctgaaaggtt
     5521 acggcgttaa attttcaaaa tacgctcacc gcgaccgatg ccggccgcgc ctgtacgtac
     5581 ggtttccaaa atttgggcgc gtccgaccgt ttccaaaaag gaatccagct tgtcggtcga
     5641 gccggtaatt tcaatcgtat agctgcggtc ggttacgtcg atgatgctgc cccggtagat
     5701 ttcggtcaaa cgcaaaaatt cgtcgcggtc tttgccggcg gcacggactt ttaccaacat
     5761 cagttcgcgt tcgacaaaac ggctttcgtt caaatcgacc actttaatca cttcaatcaa
     5821 tttattgagt tgcttggtga tttgttcgat aacctgctcg tcgccgtggg taacgatggt
     5881 catacgggac agggttttgt cttcggtcgg cgcaaccgcc aaagaatcga tattgtaatc
     5941 gcgtgcagag aacaaaccga ccacgcggct catcgcacct gattcgtttt caatcagaac
     6001 agataagata tgtcgcattt gcctctcctt acgccttttc gtccgcacgc atatgcggcg
     6061 gaagtaccat ttcgtccaaa cctttgccgt tgccgaccat gggcatcaca ttctgtttct
     6121 ggtcggtcag gaagtcgata aacaccagcc tgtctttttg gttcaatgct tccaacaacg
     6181 caccttccac atcagacttc ttgtccacgc ggataccgat atggccgtat gcctcggcaa
     6241 gtttgacgaa atcgggcaaa gaatcgaaat aagtttccga ctctcggccg ccgtaatata
     6301 tttcctgcca ctggcgtacc ataccgagat aaccgttgtt cagcgtaatg acgttaaccg
     6361 gaatccgata ttggaaacag gtggacaact cttggatgtt catctggatc gagccgtcgc
     6421 cggtaataca gaatacgtct tgatccgggg cggcaagttt tgcaccaatc gcataaggca
     6481 gacccacgcc catcgtaccc aaaccgccgg aattgagcca ttggcgcgga cgttcgaagg
     6541 gataatattg agccgcaaac atttgatgct gccctacatc cgatgtgatg attgccgaat
     6601 tgccggtaat ctcggcaagc ttctgaatca catattgtgg cttgataatt tcgctgccgt
     6661 tgtcaaacca caagcaatct tgggaacgcc attcctctat ggttttccac catttgccca
     6721 aagcatcttc agacggcatg aactcttgtt tttgccacag cgcaaccatc tcagacaaaa
     6781 catttttcac gtcgccgaca atcggaatgt ccaccttcac gcgtttggcg atgctggaag
     6841 gatcgacatc gatatggata accttcttcg ccttctcgaa aaatttggac ggtacggaaa
     6901 ccacacggtc gtcaaaacgc gcacctacgg caagaacgac atccgcattc tgcatggcaa
     6961 ggtttgcctc gtaagtaccg tgcataccga gcataccgag gaattggcgg tcgccggaag
     7021 gataagcgcc caagcccatc agcgtacccg tgcacggagc acccgtcatt cggacaaatc
     7081 gggtcagctc ttcagaagca ttacccaaca ccacgccgcc gccaaaatag acgaccggac
     7141 gtttggcaga tgccaacatc tgcacggcct ttttaatctg accgatatgc ccttgaacaa
     7201 ccggttgata cgaacggata aaaatgtctt cctgaggata gctgaatttc gccatcgcct
     7261 gcgtaacatc tttcgggaca tcaaccacca cgggccccgg tcggccgctt gcggcaattt
     7321 ggaacgcctt tttaatggtt tccgccaact cattgatgtc cgtaaccagg aaattgtgtt
     7381 tgacgcacgg acgggtaata cccaccgtat caacttcttg gaacgcatcc gtaccaatca
     7441 gggaattgcc tacctgcccg ctgatgacca ccatcggaat cgaatccgta taggcagtag
     7501 caataccggt cagtgcattg gtaacgcccg ggccggatgt aaccaatgcc acgcccacct
     7561 taccgctgac gcgcgcatac gcatctgccg cgtgtactgc cgcctgctcg tgacgggtca
     7621 gaatgtgctt gaatttattg agttggaaaa gggcatcgta gatttcgata accgcaccgc
     7681 cgggataacc gaaaacgtac tcgacacctt cggctttgag actctgcact atgatttgcg
     7741 cgcctgataa ctgcataacg acctctttta tacggtttca aaccaatagg gacaaaccgc
     7801 tttgccacag cacctgtaat gcaattccac caagcagcga tttagggtac gcgcattggg
     7861 ggaacacggc aacagacgga ttatccaatc aattggaaag gaacacagag tttgtgaaaa
     7921 agagtagaaa cgataacgca aaccgacagt tcaatcaaga aaaatctttc atcttttaat
     7981 attttttgaa agcagagaaa ttattgattg attttaaaag aataaaatca ggagtacctt
     8041 ttttgaaaga tggaaattgt tgacagtttg tgtaggaggg gcagatgtga aaaacccttc
     8101 ttcgatatca agaattgtaa aatttacagg gtttcatccc aataaagact cgggatattg
     8161 attgaacttg attttatttt tgatatatca aaaatattcc caaccatact tcctgaaaat
     8221 ggctcattgc accggactgt attggacggc attgacagaa ccaagagggc taacaacgac
     8281 ttaatatatt
//
LOCUS       DAXIFS010000080         8274 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.080, whole genome shotgun sequence.
ACCESSION   DAXIFS010000080 DAXIFS010000000
VERSION     DAXIFS010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8274
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.080"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(59..1315)
                     /locus_tag="ACFOCA_001225"
     CDS             complement(59..1315)
                     /locus_tag="ACFOCA_001225"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFC6987946.1"
                     /translation="MNAAQLDHTAKVLAEMLTFKQPSDAVLSAYFREHKKLGRQDRHE
                     IAETAFAALRHYQKISTALRRPHAQPRKAALAALVLGRSTNISQIKDLLDEEETEFLG
                     NLKARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKG
                     KRDKVLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALL
                     VGAKRGEIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNI
                     HPERISSEHDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQH
                     SILDAASKLVKPQGRLVYATCSILPEENELQVERFLSEHPEFEPVNCAELLQSLKIDL
                     DTGKYLRLDSAKHQTDGFFAAVLQRK"
     gene            complement(1351..2208)
                     /locus_tag="ACFOCA_001226"
     CDS             complement(1351..2208)
                     /locus_tag="ACFOCA_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HFC6987947.1"
                     /translation="MNYALDALWWKLTSQPVRDLASLLTAPPLWQSGCELGVRELLGE
                     RGFRYLLALDADPAPLTEHLTRRAPFGHRLGIYAEELLAFWFANAPHAELLAHNLTVS
                     GSDGNTQGAADFVVRLNGKPYHIELTCKYYGGGTGRLEDMRGLDPKDTLLGKAAKLTA
                     QLGLPHTSDGIRTLRQHGLPLDVKPVSIVRGIGFFPQSFHAFEPPLNPYGWRGIYIQD
                     WAEYGFERQEVRYHLLDRMAYLAPARAAETETLNETEIRRIDQGLIAVLECRPDGFWH
                     EIERIMKAV"
     gene            complement(2269..3084)
                     /locus_tag="ACFOCA_001227"
     CDS             complement(2269..3084)
                     /locus_tag="ACFOCA_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HFC6987948.1"
                     /translation="MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLT
                     IVAPNLMATPMTENPPVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD
                     TTIACALTSRRREITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACN
                     RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTGSPMTHLQQEDHAATHEQIKGMVAHME
                     SVMNDIGFFNRRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTVSHRIHKKD"
     gene            3148..3318
                     /locus_tag="ACFOCA_001228"
     CDS             3148..3318
                     /locus_tag="ACFOCA_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987949.1"
                     /translation="MPSEMFFNNVGNLTLRLKQTRVGRYFTRFGRIYPNQINSDFAAP
                     KDCASEPAVCHP"
     gene            3328..4113
                     /locus_tag="ACFOCA_001229"
     CDS             3328..4113
                     /locus_tag="ACFOCA_001229"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6987950.1"
                     /translation="MNPFLNTAFKAARRAGQMMIRAAGNLDAVKTDSKAFNDFVSDVD
                     RNSEIILVEALKEAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHGHPQYAIS
                     MALLHKGVLQEALVYAPERNDVYMASRGKGALLNDRRIRVSNRIELNRCLIGTGFPVV
                     DQSMMDKYLAILKDFLAKTAGGRREGAASLDLCAVATGRFDGFFEFNLKPWDIAAGAL
                     IVQEAGGIVTDMTGEDGWLESGDIVAANPKVLAQMLKIISAHV"
     gene            4383..6506
                     /locus_tag="ACFOCA_001230"
     CDS             4383..6506
                     /locus_tag="ACFOCA_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6987951.1"
                     /translation="MGKANAFTAPITVVNYDEQALNNTEARTLVDAVAKKDASVWQFG
                     GESNTLTGLYFRGYQLDARQFSVNGLAGMYGTQGTASVQVGSAQLIKGASTAVNGMNP
                     EGAVSGSVNIETKKAADEGNRKIGLGRFSNNRAQGTFDLGQRFGENKAFGVRANGKLR
                     HGDTPRHGYSEDNKEFAVNADYRGETLRVAFDSIYAKRKTNGGRARMQDIQNAGGRLF
                     GAPDGKTNLLPSWNWQNTAGQTNMLTFEWDAFDNAQITGGIGYNKARYYGTLISPTVC
                     LNATSTCTDMQNTNASGKVTARNYDYNTGTARLTDQYFRTLSMNLSARGEFETGPVTH
                     NWSTAFDRVIRQRKTINGSGNGNSKIEVKANENIANQLASFTADYPNSWENSANLDAN
                     IKVNSLALSDTLGFVDNKYRLTLGGRFQAVEYTNKKKSQSGDAKRFSPMLMAAWVPQP
                     DLVVYGNYMEDLEPADIKTDDSGETTMAKPRVSRQFEVGVRKNWGNFVTTLNAFQIKR
                     PGYWRGHTTTKTTKGVTTTLTYGNNSDFARYKAQGGAAGDEQGMERNRGIEFNTYANL
                     LNNTLRPTLGLMYLQSTVKEYPNSRDMLVNGVQVANPRVIAKAGLEWDTPFAKGLTLN
                     GNVSYFGKSYQDTQKQYAFPSYTLVDVGARYKTKLGKNTLTVSSSVENLFNKNYWQVQ
                     RGQYDRSFAVVGMPRTYWLKAELDF"
     gene            6630..8180
                     /locus_tag="ACFOCA_001231"
     CDS             6630..8180
                     /locus_tag="ACFOCA_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HFC6987952.1"
                     /translation="MKKPLISVAAALLGVALGTPYYLGVKAEESLTQQQKILQETGFL
                     TVESHQYERGWFTSMETTVIRLKPELLNNARKYLPDNLKTVLEQPVTLVNHITHGPFA
                     GGFGTQAHIETEFKYAPETEKVLERFFGKQAPVSLANTVYFNGSGKMEVSVPAFDYEE
                     LSGIRLHWEGLTGKTVYQKGFKSYRNSYDAPLFKIKLADKGDAAFEKAHFDSETSDGI
                     NPLALGSSNLTLEKFSLEWKEGVDYNVKLNELVNLVTDLQIGAFINPNGSIAPSKIEV
                     GKLAFSTKTGESGSFINSEGQFRFDTLVYGNEKYGPLDIHIAAEHLDASALTVLKRKF
                     AQISAKKMTEEQIRNDLIAAVKGEASGLFTNNPVLDIKTFRFTQPSGKIDVGGKIMFK
                     DMKKEDLNQLGLMLKKTEADIRMSIPQKMLEDLAVSQAGNIFSVNAEDEAEGRASLDD
                     INETLRLMVDSTVQSMAREKYLTLNGDQIDTAISLKNNQLKLNGKTLQNEPEPDFDEA
                     GMVSEPQQ"
BASE COUNT         2012 a         2023 c         2305 g         1934 t
ORIGIN      
        1 atgaaatgcc gtctgaacgc tttgaaaagg gttcagacgg cattttgttt aaacagggtt
       61 atttgcgttg caatacggcg gcgaagaagc cgtcggtttg gtgttttgcc gaatcgaggc
      121 gcaggtattt gccggtatcc aaatcgattt tcaggctttg cagaagttcg gcgcagttga
      181 cgggttcaaa ttcgggatgt tcggacagga aacgttcgac ttgcagctcg ttttcttcgg
      241 gcaggatgct gcaagtggcg taaaccaagc ggccttgcgg ttttaccagt ttggaggcag
      301 catcgaggat gctgtgttgc tgttccaaaa ggttggccac ggtctcggca gattggcggt
      361 atttgaggtc gggattgcgg cgtaaagtac ccaaaccgga gcagggcgcg tccaccaaca
      421 cacggtcggc tttgcctgcc agtcgggcga tacggctgtc gtgttcgctg ctgatgcgtt
      481 cggggtggat attggtcagt ccggcgcggg tcatacgcgg tttgaggttg gcaaggcgtt
      541 tttcggcgat gtcgaaggcg tagattctgc ctttattggc catttgcgca ccgacagcca
      601 aggttttgcc gccggcaccg gcacagaaat cgacaatgat ttcgccgcgt tttgcgccca
      661 ccaataaagc aagcagctgg ctgccttcgt cttggacttc cagtgtgccg tctaaaaaca
      721 gttcgtgttt gttaagcgcg attttgtttt tcaggcggat gccccaaggc gaataaggcg
      781 ttgcctctgc atcggcactt tcggcttgca acagcggcag cactttatcg cgtttgcctt
      841 tcaaagtgtt gacgcggatg tcgagcggcg cggcttggtt gatgctgcgt ccgaaggcga
      901 ggatttcttc ttcgttccaa tgctgttgca gttgttcgac cagccattgc ggcaattctg
      961 cggcggtatt cagaccgtct gaaaactcgg ttttgcgggc tttcaaattg ccgaggaact
     1021 ctgtttcttc ttcatcaagc aggtctttga tttggctgat gttggtgctt ctgccgagaa
     1081 ccagtgcggc gagtgcggct ttgcgtggct gcgcgtgagg acggcgcagg gcagtgctga
     1141 ttttttgata gtggcgcagc gcggcaaagg cggtttcggc gatttcgtgg cggtcttggc
     1201 ggccgagctt tttatgttcg cggaagtagg cggagaggac ggcatcggaa ggctgtttga
     1261 aagtcagcat ttcagccaaa actttggcgg tatggtcgag ttgtgcggcg ttcataatgt
     1321 aatgggttct cttaaagttg gcaaagggtt tcagacggcc ttcataatgc gttcgatttc
     1381 gtgccaaaag ccgtccggcc gacattccaa aacggcaatc aagccttggt cgatacggcg
     1441 gatttcggtt tcgttcaatg tttcggtttc ggcggcacgc gcaggtgcga ggtaggccat
     1501 gcggtcgagc agatggtagc ggacttcttg gcgttcaaac ccgtattccg cccagtcttg
     1561 aatatagatg ccgcgccagc cgtatgggtt aagcggcggc tcaaaagcat ggaaactttg
     1621 tggaaaaaat ccgatgccgc gcacgatgga aacgggtttt acgtcaagcg gcagaccgtg
     1681 ttgccgcaag gttcggatgc cgtctgaagt gtgcggcaga ccgagttggg cggtcagttt
     1741 ggcggctttt cccaacagcg tgtctttggg gtcgagtccg cgcatgtctt cgagcctgcc
     1801 cgtgccgccg ccgtaatatt tgcaggtcag ctcgatatgg tagggcttgc cgttaagcct
     1861 taccacaaaa tccgccgcgc cttgcgtatt gccgtccgaa ccggaaaccg tgaggttgtg
     1921 cgcgagcagt tcggcgtgtg gcgcgttggc aaaccaaaat gccagcagtt cttcggcgta
     1981 aatgcccaag cggtgtccga acggggcgcg tcgggtgagg tgttccgtca gcggcgcggg
     2041 atcggcatcc aatgccaaaa gatagcggaa accgcgttcc cccaatagtt cgcgcacgcc
     2101 caattcgcaa ccgctttgcc acaaaggcgg cgcagtcagc agcgaggcga ggtcgcggac
     2161 gggttggctg gtgagcttcc accataatgc gtctagggcg taattcatgc ttatccgaat
     2221 atcagtcatg ccgtctgaaa agctggaaat gttttcagac ggccttaatc agtctttttt
     2281 atggatacga tggctgacgg tattgaaaaa accgcgcagg atatcgatgt cttcggtttg
     2341 cgtgttggcg cgtccgaaca ggctctgcat acggcgcatc agacgctcgc cgttgcggcg
     2401 gttgaaaaag ccgatgtcgt tcatcacgct ttccatgtgg gcgaccatgc ctttgatttg
     2461 ctcgtgggtc gcagcgtggt cttcttgttg aagatgggtc atgggcgaac cggtttggct
     2521 gaagatttcg tagcacacga cctgcacggc ttgggcgagg ttgagcgaga aatagtcggg
     2581 attgccgttg atggtcatca gtcggttgca ggcttggact tcttcgatgc tcaagccgaa
     2641 agtctcgttg ccgaaaacca gtgccacttt ctcgcctcgg tttgcggtct gcagtaattc
     2701 ggataccaaa tcgcgcgggg tttgcagcgg cgcagtaatt tcgcggcggc ggctggtcag
     2761 ggcgcaggcg atggtggtgt cggcaagggc ttcgtccaaa gaagcggcaa tggtggcatt
     2821 ttccaaaacg tctgccgcgc cggaagcgag gatgaagctt tcttccggta atttaaacga
     2881 ttgaggatgc tccgggtcaa acacgggcgg gttttccgtc atcggcgttg ccatcagatt
     2941 tggggcgacg atggtcagtt tgtgcagacc cattgttttc atcgcgcgcg cggcagagcc
     3001 gatgttggcg ggatggctgg tgcgcgtgag gatgatgcgg atgttgtcca gataagcggg
     3061 cagggcgggt ttgagagtag tcatgttcgg ttttcggtcg gaatggaata gggtataatg
     3121 cgccgtcttt ttcgttcgga cggtcaaatg ccgtctgaaa tgttctttaa caacgtcgga
     3181 aatttaacgt tgcgcctgaa gcagacacgc gtcgggcggt attttacccg atttggcagg
     3241 atttacccca accaaataaa ctccgatttt gccgctccga aggactgcgc gtccgaaccg
     3301 gcggtatgcc acccttaagg aaatctgatg aatccgtttt tgaatacagc ctttaaagcc
     3361 gcccgccgtg ccggtcagat gatgatacgc gccgcgggca atctcgatgc cgtcaaaacc
     3421 gacagcaaag cattcaacga ttttgtttcc gatgttgacc gcaattccga aatcatcctg
     3481 gttgaggctt tgaaagaagc ctatccgcac cacaaaatca cttgcgaaga aagcggctcc
     3541 cacggtaaag ccgcagccga atacgaatgg attatcgatc cgctcgacgg cacgaccaac
     3601 ttccttcacg gccatcccca atacgccatc tctatggcac tcctgcacaa aggcgtgttg
     3661 caagaagctt tggtgtacgc ccccgaacgc aacgacgttt acatggcttc gcgcggcaaa
     3721 ggcgcgttgc tcaatgaccg ccgcatccgc gtttccaacc gcatcgaatt gaaccgctgc
     3781 ctgatcggta ccggctttcc tgttgtcgat caaagcatga tggacaagta tctggcgatt
     3841 ttgaaagatt tcttggcaaa aaccgccggc ggccgtcgtg aaggcgcggc ttctttggat
     3901 ttgtgtgctg tggcgactgg tcgttttgac ggctttttcg agttcaacct caaaccttgg
     3961 gatattgccg caggcgcatt gattgttcag gaagcgggcg gtatcgtaac cgatatgacg
     4021 ggtgaagacg gctggctgga aagcggcgat attgttgccg ccaatcccaa agtgctggcg
     4081 caaatgttaa aaatcatttc cgcacacgtt taaatttcag cccgctcccg ggaatgcggg
     4141 aaaacgggcg ggtatgccgt ctgaagtatc gcgccgatat ttcagacggc atttttactg
     4201 gcagcggggg caggaaggtg gaaacggcta aatgcccgaa actgccgaag atggaaaccc
     4261 atatctgatt aaacggagaa ccctgtacga tttgtttata gtggattaac aaaaaccagt
     4321 acggtgttgc ctcgccttag ctcaaagaga acgattctct aaggtgctga agcaccaagt
     4381 gaatgggcaa agccaacgcc tttaccgcgc cgattaccgt cgtcaactac gacgaacaag
     4441 ccctcaacaa caccgaagcg cgtactttgg tggatgccgt agcgaaaaaa gacgcttccg
     4501 tttggcagtt cggcggagaa agcaacacgc tgactggact gtatttcaga ggttatcagc
     4561 ttgatgcgcg ccaattcagc gtcaacggtt tggcaggtat gtacggcacg caaggcacgg
     4621 ccagcgtgca agtcggctcc gcacaactga ttaaaggcgc gtccaccgcc gtaaacggca
     4681 tgaaccctga aggtgcggta tccggttccg tcaatatcga aaccaaaaaa gccgccgatg
     4741 aaggcaaccg caaaatcggt ttgggccggt ttagcaacaa ccgcgcccaa ggtacgttcg
     4801 atttgggtca acgcttcggc gaaaacaaag cattcggcgt acgcgccaac ggcaaactgc
     4861 gccacggcga cactccgcgc cacggttaca gcgaagacaa caaagaattt gcggtaaatg
     4921 ccgactatcg cggcgaaaca ctgcgcgtag cgttcgattc catctacgca aaacgcaaaa
     4981 ccaacggcgg tcgcgcgcgt atgcaggaca ttcaaaacgc cggcggacgc ttgtttggcg
     5041 cgcccgatgg taaaaccaac ctgctgcctt cttggaactg gcaaaatacc gccggccaaa
     5101 ccaatatgct tacgtttgaa tgggatgcgt ttgataatgc acagattaca ggcggtatcg
     5161 gctacaacaa ggcacgctat tacggcacgc tgatttcccc gaccgtatgt ttgaatgcta
     5221 ccagcacttg taccgatatg caaaacacaa acgccagcgg caaagtaacg gcacgcaact
     5281 atgactacaa taccggtact gcgcgcctga ccgaccaata cttccgcact ttaagcatga
     5341 acctgtctgc gcgaggcgaa tttgaaaccg gcccggtaac acataactgg agtacggctt
     5401 tcgaccgcgt tatccgccag cggaaaacca taaacggcag cgggaacggc aacagcaaga
     5461 tagaagtgaa ggcaaacgaa aatattgcga atcaattggc atcgtttaca gccgactatc
     5521 ccaattcttg ggagaactct gccaacttgg atgccaatat caaagtcaac agcctggctt
     5581 tgtccgacac cttgggcttc gtggataaca aataccgcct gactttgggc ggacgtttcc
     5641 aagcggttga atacaccaat aagaaaaaat cacagagcgg cgatgccaaa cgcttcagcc
     5701 cgatgctgat ggcggcgtgg gtgccgcaac ctgatttggt tgtgtacggc aactatatgg
     5761 aagacttgga gcctgccgat atcaaaaccg atgattccgg cgaaacgaca atggcgaaac
     5821 cgcgtgtcag ccgtcagttt gaagtgggcg tgcgtaaaaa ctggggcaat ttcgtaacca
     5881 cgttaaacgc gttccaaatc aaacgcccgg gctactggcg cggtcataca actaccaaga
     5941 caacaaaagg ggtaacaaca acgctgacct atggcaacaa ttccgatttc gcccgctata
     6001 aggcgcaagg cggcgcggcc ggcgacgagc aaggtatgga acgcaatcgc ggtattgagt
     6061 tcaacaccta cgcgaacttg ctcaacaata ctttgcgtcc gactttgggt ctgatgtatc
     6121 tgcaatcgac cgtgaaagag tatccaaatt cacgcgatat gctggttaac ggcgtacaag
     6181 tcgccaatcc gcgcgtaatt gccaaagcag gtttggaatg ggatacaccg tttgccaaag
     6241 gattgacttt aaacggtaat gtttcgtatt tcggcaagtc ttaccaagac acgcaaaaac
     6301 aatacgcttt cccgtcttac actttggttg acgtaggcgc gcgctacaaa accaagctcg
     6361 gcaaaaatac gttgaccgtc agcagctcgg tggaaaacct gttcaacaaa aactactggc
     6421 aggtacagcg cggccaatac gaccgcagct tcgccgtcgt cggtatgccg cgtacttact
     6481 ggttgaaagc ggaattggat ttctgatttc tccgcatccg gaaaatgccg tccgaacagg
     6541 tttcagacgg catttctttt aaagaaatat ggcgggatat gcttaaataa tgctattcta
     6601 gcgtctttga aacctgcttg tttgaagtga tgaaaaaacc tttgatttcg gttgcggcag
     6661 cattgctcgg cgttgctttg ggtacacctt attatttggg tgtcaaagcc gaagaaagcc
     6721 tgacgcagca gcaaaaaata ttgcaggaaa cgggcttctt gaccgtcgaa tcgcaccaat
     6781 atgagcgcgg ctggtttacc tctatggaaa cgacggtcat ccgtctgaaa cccgagttgc
     6841 tgaataatgc ccgaaaatac ctgccggata acctgaaaac agtgttggaa cagccggtta
     6901 cgctggttaa tcatatcacg cacggccctt ttgccggcgg atttggcacg caggcgcaca
     6961 ttgaaaccga gttcaaatac gcgcctgaaa cggaaaaagt tttggaacgc ttttttggga
     7021 aacaagctcc ggtttccctt gccaataccg tttattttaa cggcagcggt aaaatggaag
     7081 tcagtgttcc cgccttcgat tatgaagagc tgtcgggcat caggctgcat tgggaaggat
     7141 tgacgggaaa aacggtttat caaaaaggtt tcaaaagcta ccgcaacagc tatgatgcgc
     7201 ccttgttcaa aatcaagctg gcagacaaag gcgatgccgc gtttgaaaaa gcgcatttcg
     7261 attcggaaac ttcagacggt atcaatccgc ttgctttggg cagcagcaat ctgaccttgg
     7321 aaaaattctc cctagaatgg aaagagggtg tcgattacaa cgtcaagtta aacgaactgg
     7381 tcaatcttgt taccgatttg cagattggcg cgtttatcaa tcccaacggc agcatcgcac
     7441 cttccaaaat cgaagtcggc aaactggctt tttcaaccaa gaccggggaa tcaggctcat
     7501 ttatcaacag tgaagggcag ttccgttttg acacgctggt gtacggcaat gaaaaatacg
     7561 gcccgctgga catccatatc gccgccgaac atctcgatgc ttctgcctta accgtattga
     7621 aacgtaagtt tgcacaaatt tccgccaaaa aaatgaccga ggaacaaatc cgcaatgatt
     7681 tgattgccgc cgtcaaaggc gaggcttccg gactgttcac caacaatccc gtattggaca
     7741 ttaaaacttt tcgtttcaca cagccgtcgg gaaaaatcga tgtgggtgga aaaatcatgt
     7801 ttaaagacat gaagaaggaa gatttgaacc aattgggttt gatgctgaag aaaaccgagg
     7861 cagacatcag aatgagtatt cctcaaaaaa tgttggaaga cttggcggtc agtcaggcag
     7921 gcaatatttt cagcgtcaat gccgaagatg aggcggaagg cagggcaagt cttgacgaca
     7981 tcaacgagac cttgcgcctg atggtggaca gtacggttca gagtatggca agggaaaaat
     8041 atctgacttt gaacggcgac cagattgata ctgccatttc tctgaaaaac aatcagttga
     8101 aattgaacgg taaaacgttg caaaacgaac cggagccgga ttttgatgaa gccggtatgg
     8161 tttcagagcc gcagcagtaa tgggtcaaat gccgtctgaa atgttcaggc ggcattttgt
     8221 tgtattggaa actgccgttt tcaaccattc ctttagataa gccgtgtcgg attc
//
LOCUS       DAXIFS010000081         8046 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.081, whole genome shotgun sequence.
ACCESSION   DAXIFS010000081 DAXIFS010000000
VERSION     DAXIFS010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8046
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.081"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFOCA_001232"
     CDS             complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFOCA_001232"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFC6987953.1"
                     /translation="MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPKP
                     RVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELG
                     ARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLV
                     EDLITLRMLVEATLDFPEEDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLN
                     VVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRE
                     TDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSD
                     LHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEGEGLFLARTRHVNAL
                     KAAQEELSLAALCGNHQIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK"
     gene            1556..1711
                     /locus_tag="ACFOCA_001233"
     CDS             1556..1711
                     /locus_tag="ACFOCA_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6987954.1"
                     /translation="MEKRNTYAFLLGIGSLLGLFHPAKTAIRPNPADDLKNIGGDFQR
                     AIEKARK"
     gene            1708..2139
                     /locus_tag="ACFOCA_001234"
     CDS             1708..2139
                     /locus_tag="ACFOCA_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2335 domain-containing protein"
                     /protein_id="HFC6987955.1"
                     /translation="MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARRFHSGP
                     LPPPSDLAQYNDIISNGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISVILIL
                     LFAVFLVWSGYPATAASLAGGTVVALAGAFVIGRSRDQGKN"
     gene            2273..6637
                     /gene="app"
                     /locus_tag="ACFOCA_001235"
     CDS             2273..6637
                     /gene="app"
                     /locus_tag="ACFOCA_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_168458961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion and penetration autotransporter App"
                     /protein_id="HFC6987956.1"
                     /translation="MKTTDKRTTETHRKAPKTGRIRFSPAYLAICLSFGILPQAWAGH
                     TYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVA
                     ALVGDQYIVSVAHNGGYNNVDFGAEGSNPDQHRFTYKIVKRNNYKAGTNGHPYGGDYH
                     MPRLHKFVTDAEPVEMTSYMDGRKYIDQNNYPDRVRIGAGRQYWRSDEDEPNNRESSY
                     HIASAYSWLVGGNTFAQNGSGGGTVNLGSEKIKHSPYGFLPTGGSFGDSGSPMFIYDA
                     QKQKWLINGVLQTGNPYIGKSNGFQLVRKDWFYDEIFAGDTHSVFYEPRQNGKYSFHD
                     NNNGTGKIDAKHEHNSLPNRLKTRTVQLFNVSLSETAQEPVYHAAGGVNSYRPRLNNG
                     ENISFIDEGKGELILTSNINQGAGGLYFQGDFTVSPENNETWQGAGVHISEDSTVTWK
                     VNGVANDRLSKIGKGTLHVQAKGENQGSISVGDGKVILDQQADENNKKQAFSEIGLVS
                     GRGTVQLNADNQFNPDKLYFGFRGGRLDLNGHSLSFHRIQNTDEGAMIVNHNQDKEST
                     VTITGNKDIATTGNNNSLDSKKEIAYNGWFGEKDTTKTNGRLNLVYQPAAEDRTLLLS
                     GGTNLNGNITQTNGKLFFSGRPTPHAYNHLNDHWSQKEGIPRGEIVWDNDWINRTFKA
                     ENFQIKGGQAVVSRNVAKVKGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCVEK
                     TITDDKVIASLTNTDISGNVSLADHAHLNLTGLATLNGNLSANGDTRYTVSHNATQNG
                     DLSLVGNAQATFNQATLNGNTSASGNASFNLSDHAVQNGSLTLSGNAKANVSHSALNG
                     NVSLADKAVFHFESSRFTGQISGSKDTALHLKDSEWTLPSGTELGNLNLDNATITLNS
                     AYRHDAAGAQTGSATDAPRRRSRRSLLSVTPPASVESRFNTLTVNGKLNGQGTFRFMS
                     ELFGYRSDKLKLAESSEGTYTLAVNNTGNEPASLEQLTVVEGKDNKPLSENLNFTLQN
                     EHVDAGAWRYQLIRKDGEFRLHNPVKEQELSDKLGKAEAKKQAEKDNAQSLDALIAAG
                     RDAVEKTESVAEPARQAGGENVGIMQAEEEKKRVQADKDTALAKQREAETRPATTAFP
                     RARRARRDLPQLQPQPQPQPQRDLISRYANSGLSEFSATLNSVFAVQDELDRVFAEDR
                     RNAVWTSGIRDTKHYRSQDFRAYRQQTDLRQIGMQKNLGSGRVGILFSHNRTENTFDD
                     GIGNSARLAHGAVFGQYGIDRFYIGISAGAGFSSGSLSDGIGSKIRRRVLHYGIQARY
                     RAGFGGFGIEPHIGATRYFVQKADYRYENVNIATPGLAFNRYRAGIKADYSFKPAQHI
                     SITPYLSLSYTDAASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIKGFTLSLHAAAAK
                     GPQLEAQHSAGIKLGYRW"
     gene            complement(6746..7468)
                     /locus_tag="ACFOCA_001236"
     CDS             complement(6746..7468)
                     /locus_tag="ACFOCA_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6987957.1"
                     /translation="MFPDKYKLSLKENIFLAKKVLVAQIHNLSRFENCQTTLLQTEQI
                     IHGKNVASVSLEDIQTILNLKRAYQYVISHISNGEPVNISLLKKINNIVAKDDSLAPG
                     DFRTGSVGVTLLDGSRHAPNPVKEIEVARVLQNIGLQSGSTTEAAVRFMLYCMRQQVF
                     WDGNKRTATLFANGLMMAGGCGILEISEMQMPQFNEKLSAFYRSGDDTDISKFVYQNC
                     ISGIDYFGTHEDIDFPDPPNMG"
BASE COUNT         2132 a         2227 c         1947 g         1740 t
ORIGIN      
        1 aaccaaacgg atcggattcc cgtttttatg ggataacgga atgttcagcc ggacaccgcc
       61 acgatgcttt cgatccgttt attttccgat acaaaacctc gaaaaaatca cgccgagcag
      121 gtcgtccgcc gtaaactcgc ccgtgatttc gccgcatgcg acctgcgcca agcgcaagtg
      181 ttcggcaaac agctcgattt gatggttgcc gcacaatgcc gccagcgaca attcttcctg
      241 cgctgctttg agtgcgttga cgtgccgcgt ccgcgccaaa aacagccctt cgccctcgcc
      301 ctgccatccg gcctcgcgca acaacgtccg tttcagcgcg tccaagccgt cgccggtttt
      361 cgccgacagc gcgatgacgg tttccgcgcc cgtaccgaac ccgcctgccg cgtgtgcgtg
      421 caaatcggat ttgctgtgga tttcgatgcg tttcaactcc ggcggcaacg cgtccaaaat
      481 cgcccgtgtc ttgtcgttca cgccttcgcg cggatcgacc aacaccagcg cgacatcggc
      541 ttcggatacg gctttgcggc tgcgttcgat gccgatgcgt tcgaccacgt cgtccgtctc
      601 gcgcaaacct gccgtatcga caatatgcac cggaacgccg tcaatcagga tacgttccct
      661 gaccgcgtcg cgcgtcgttc cggcaatatc ggtaacaatc gccacttcgt cgcccgccag
      721 cgcgttcaac aggctggatt tgccgacatt cggcgcgccg accaatacga cattcagacc
      781 ttcgcgcaaa atcgcgccct gctgcgcgtt ggcaagcaca tcatccacgg cgcggcgcaa
      841 gccgtccagt ttgccgcgtg cgtctgccgc ttcgagaaaa tcaatgtctt cctcgggaaa
      901 atctaacgtc gcttcgacca gcatccgcaa ggtaatcaag tcttcgacta gaccgtgtat
      961 ccgccgcgaa aaatcgcctt tgagcgagcg caacgccaga cgcgccgccg aacggctgga
     1021 tgcgtcaatc aaatccgcca cgccttccgc ctgtgccaag tccagtttgt cgtttaaaaa
     1081 cgcacgcttc gtaaactcgc ccggttcggc aaggcgcgcg cccaattcca aacagcggtt
     1141 cagcagcata tccatcacta ccggcccgcc gtgtccctga agctcgataa catcttcgcc
     1201 cgtaaaactt gccggtgcgg caaaaaaaag caaaagcccg ctgtcgattg cctgaccgtc
     1261 cgcgtccgta aaatcagcat aggttgccac gcgcggcttg ggcgttttcc cacacaaagc
     1321 ctctgccatc ggcagcaggt ttttccccga tatgcgtatc acgcccacgc cgccgcgccc
     1381 gggtgcggta gcgactgccg caatcgttgg aacgttatcc gacataaaac ccccgaaaat
     1441 tcaaaacagc cgcgattata gcaaatgccg tctgaagtcc gacggtttgg ctttcagacg
     1501 gcataaaacc gcaaaaatgc ttgataaatc cgtccgcctg acctaatata accatatgga
     1561 aaaacgaaac acatacgcct tcctgctcgg tataggctcg ctgctgggtc tgttccatcc
     1621 cgcaaaaacc gccatccgcc ccaatcccgc cgacgatctc aaaaacatcg gcggcgattt
     1681 tcaacgcgcc atagagaaag cgcgcaaatg accgaaaacg cacaggacaa ggcgcggcag
     1741 gctgtcgaaa ccgtcgtcaa atccccggag cttgtcgagc aaatcctgtc cgacgagtac
     1801 gtgcaaataa tgatagcccg gcgtttccat tcgggaccgt tgccgccgcc gtccgacttg
     1861 gcgcaataca acgacattat cagcaacggg gcagaccgca ttatggcaat ggcggaaaaa
     1921 gaacaagccg tccggcacga aaccatacgg caagaccaaa ccttcaacag gcgcgggcaa
     1981 ctgtacggct tcatcagcgt catcctgata ctgctttttg ccgtcttcct cgtatggagc
     2041 ggctaccccg caaccgccgc ctcccttgcc ggcggcacag tggttgcctt ggcgggtgct
     2101 ttcgtgattg gaagaagccg agaccaaggc aaaaattaat gacaaatcct agggcgtgct
     2161 tcatatccgc ccgaacgccg aaccgcacat ataggcacat cccgcgcgcc gcccggaagc
     2221 ggaagccgcg ccctcccaaa caaacccgaa tcccgtcaga taaggaaaaa taatgaaaac
     2281 aaccgacaaa cggacaaccg aaacacaccg caaagccccg aaaaccggcc gcatccgctt
     2341 ctcgcctgct tacttagcca tatgcctgtc gttcggcatt cttccccaag cttgggcggg
     2401 acacacttat ttcggcatca actaccaata ctatcgcgac tttgccgaaa ataaaggcaa
     2461 gtttgcagtc ggggcgaaag atattgaggt ttacaacaaa aaaggggagt tggtcggcaa
     2521 atcaatgaca aaagccccga tgattgattt ttctgtggtg tcgcgtaacg gcgtggcggc
     2581 attggtgggc gatcaatata ttgtgagcgt ggcacataac ggcggctata acaacgttga
     2641 ttttggtgcg gaaggaagca atcccgatca acatcgtttt acttataaaa ttgtgaaacg
     2701 gaataattat aaagcaggga ctaacggcca tccttatggc ggcgattatc atatgccgcg
     2761 tttacataaa tttgtaaccg atgcagaacc tgttgaaatg accagttata tggatgggcg
     2821 gaaatatatc gatcaaaata attaccctga ccgtgttcgt attggggcag gcaggcaata
     2881 ttggcgatct gatgaagatg agcccaataa ccgcgaaagt tcatatcata ttgcaagtgc
     2941 gtattcttgg ctcgttggtg gcaatacctt tgcacaaaat ggatcaggtg gtggcacagt
     3001 caacttaggt agtgaaaaaa ttaaacatag cccatatggt tttttaccaa caggaggctc
     3061 atttggcgac agtggctcac caatgtttat ctatgatgcc caaaagcaaa aatggttaat
     3121 taatggggta ttgcaaacgg gcaaccccta tataggaaaa agcaatggct tccagctggt
     3181 tcgtaaagat tggttctatg atgaaatctt tgctggagat acccattcag tattctacga
     3241 accacgtcaa aatgggaaat actcttttca cgacaataat aatggcacag gaaaaatcga
     3301 cgccaaacat gaacacaatt ctctgcctaa tagattaaaa acacgaaccg ttcaattgtt
     3361 taatgtttct ttatccgaga cagcacaaga acctgtttat catgctgcag gtggtgtcaa
     3421 cagttatcga cccagactga ataatggaga aaatatttcc tttattgacg aaggaaaagg
     3481 cgaattgata cttaccagta acatcaacca aggtgctgga ggattatatt tccaaggaga
     3541 ttttacggtc tcgcctgaaa acaacgaaac gtggcaaggc gcgggcgttc atatcagtga
     3601 agacagtacc gttacttgga aagtcaatgg cgtggcaaac gaccgcctgt ccaaaatcgg
     3661 caaaggcacg ctgcacgttc aagccaaagg ggaaaaccaa ggctcgatca gcgtgggcga
     3721 cggtaaagtt attttagatc aacaagcaga tgaaaataat aaaaaacaag cctttagtga
     3781 aatcggcttg gtcagcggca ggggtacggt gcaactgaat gccgataatc agttcaaccc
     3841 cgacaaactc tatttcggct ttcgcggcgg acgtttggat ttgaacgggc attcactttc
     3901 gttccaccgt attcaaaata ccgatgaagg ggcgatgatt gtcaaccaca atcaagacaa
     3961 agaatccacc gttaccatta caggcaataa agatattgct acaaccggca ataacaacag
     4021 cttggatagc aaaaaagaaa ttgcctacaa cggttggttt ggcgagaaag atacgaccaa
     4081 aacgaacggg cggctcaacc ttgtttacca gcccgctgca gaagaccgca ccctgctgct
     4141 ttccggcgga acaaatttaa acggcaacat cacgcaaaca aacggcaaac tgtttttcag
     4201 cggcagacca acaccgcacg cctacaatca tttaaacgac cattggtcgc aaaaagaggg
     4261 cattcctcgc ggggaaatcg tgtgggacaa cgactggatc aaccgcacat ttaaagcgga
     4321 aaacttccaa attaaaggcg gacaggcggt ggtttcccgc aatgttgcca aagtgaaagg
     4381 cgattggcat ttgagcaatc acgcccaagc agtttttggt gtcgcaccgc atcaaagcca
     4441 cacaatctgt acacgttcgg actggacggg tctgacaaat tgtgtcgaaa aaaccattac
     4501 cgacgataaa gtgattgctt cattgaccaa taccgacatc agcggcaatg tcagccttgc
     4561 cgatcacgct catttaaatc tcacagggct tgccacactc aacggcaatc ttagtgcaaa
     4621 tggcgataca cgttatacag tcagccacaa cgccacccaa aacggcgacc ttagcctcgt
     4681 gggcaatgcc caagcaacat ttaatcaagc cacattaaac ggcaacacat cggcttcggg
     4741 caatgcttca tttaatctaa gcgaccacgc cgtacaaaac ggcagtctga cgctttccgg
     4801 caacgctaag gcaaacgtaa gccattccgc actcaacggt aatgtctccc tagccgataa
     4861 ggcagtattc cattttgaaa gcagccgctt taccggacaa atcagcggca gcaaggatac
     4921 ggcattacac ttaaaagaca gcgaatggac gctgccgtca ggcacggaat taggcaattt
     4981 aaaccttgac aacgccacca ttacactcaa ttccgcctat cgccacgatg cggcaggggc
     5041 gcaaaccggc agtgcgacag atgcgccgcg ccgccgttcg cgccgttccc tattatccgt
     5101 tacacctccg gcttcggtag aatcccgttt caacacgctg acggtaaacg gcaaattgaa
     5161 cggtcaggga acattccgct ttatgtcgga actcttcggc taccgcagcg acaaattgaa
     5221 gctggcggaa agttccgaag gcacttacac cttggcggtc aacaataccg gcaacgaacc
     5281 tgcaagcctc gaacaattga cggtagtgga aggaaaagac aacaaaccgc tgtccgaaaa
     5341 ccttaatttc accctgcaaa acgaacacgt cgatgccggc gcgtggcgtt accaactcat
     5401 ccgcaaagac ggcgagttcc gcctgcataa tccggtcaaa gaacaagagc tttccgacaa
     5461 actcggcaag gcagaagcca aaaaacaggc ggaaaaagac aacgcgcaaa gccttgacgc
     5521 gctgattgcg gccgggcgcg atgccgtcga aaagacagaa agcgttgccg aaccggcccg
     5581 gcaggcaggc ggggaaaatg tcggcattat gcaggcggag gaagagaaaa aacgggtgca
     5641 ggcggataaa gacaccgcct tggcgaaaca gcgcgaagcg gaaacccggc cggctaccac
     5701 cgccttcccc cgcgcccgcc gcgcccgccg ggatttgccg caactgcaac cccaaccgca
     5761 gccccaaccg cagcgcgacc tgatcagccg ttatgccaat agcggtttga gtgaattttc
     5821 cgccacgctc aacagcgttt tcgccgtaca ggacgaatta gaccgcgtat ttgccgaaga
     5881 ccgccgcaac gccgtttgga caagcggcat ccgggacacc aaacactacc gttcgcaaga
     5941 tttccgcgcc taccgccaac aaaccgacct gcgccaaatc ggtatgcaga aaaacctcgg
     6001 cagcgggcgc gtcggcatcc tgttttcgca caaccggacc gaaaacacct tcgacgacgg
     6061 catcggcaac tcggcacggc ttgcccacgg cgccgttttc gggcaatacg gcatcgacag
     6121 gttttacatc ggcatcagcg cgggcgcggg ttttagcagc ggcagtcttt cagacggcat
     6181 cggaagcaaa atccgccgcc gcgtgctgca ttacggcatt caggcacgat accgcgccgg
     6241 tttcggcgga ttcggcatcg aaccgcacat cggcgcaacg cgctatttcg tccaaaaagc
     6301 ggattaccgc tacgaaaacg tcaatatcgc cacccccggc cttgcgttca accgctaccg
     6361 cgcgggcatt aaggcagatt attcattcaa accggcgcaa cacatttcca tcacgcctta
     6421 tttgagcctg tcctataccg atgccgcttc gggcaaagtc cgaacgcgcg tcaataccgc
     6481 cgtattggct caggatttcg gcaaaacccg cagtgcggaa tggggcgtaa acgccgaaat
     6541 caaaggtttc acgctgtccc tccacgctgc cgccgccaaa ggcccgcaac tggaagcgca
     6601 acacagcgcg ggcatcaaat taggctaccg ctggtaacac cggatatgcc gaaaggggtt
     6661 tgacgatgcc gccgtgcgct gtcaaaccct ttttctgccg ccgccttgtg cctgctccat
     6721 tgtctgataa ccgtcaaatt gatttttagc ccatgtttgg tgggtcgggg aaatctatat
     6781 cttcgtgcgt gccgaaatag tctatgcccg atatacaatt ttgatacaca aacttggaaa
     6841 tatcggtatc gtcgccggag cgatagaatg cggacagttt ttcattgaat tgcggcatct
     6901 gcatttcgga gatttccaag atgccgcagc cccccgccat catcagaccg ttggcaaata
     6961 aggttgccgt tcgtttgttg ccgtcccaaa aaacctgctg ccgcatacaa taaagcataa
     7021 aacggacggc tgcctccgtc gtcgaaccgc tttgcagtcc gatattttgt aacacgcggg
     7081 ccacttcaat ttccttcact ggattcgggg catgacggga accgtccaat agcgttacgc
     7141 cgaccgaacc ggtacggaaa tcaccgggtg ccaaagaatc gtccttggca acaatgttgt
     7201 tgattttttt aaggagtgaa atattgaccg gttcgccatt tgaaatatgc gaaatcacat
     7261 attgataggc acgtttcagg ttcaagatgg tttggatgtc ttcaagtgac acggaggcta
     7321 catttttgcc atggataatt tgttcggtct gcaataaggt cgtctgacaa ttctcaaaac
     7381 ggctgaggtt gtgaatttgg gcaaccaata ctttctttgc caaaaaaata ttttctttca
     7441 aactcaactt gtatttgtcg ggaaacacga taattcctta aataattaaa gcagtacgtt
     7501 aaatcatcat cttatcatca ctttcggggt ttatgttgca tgcgtccgtt ttctaatacg
     7561 gtttcccatc ccgcgaaacg aggcggaggc ctgtgcaaaa aacctgttca cgaaattttc
     7621 cgcattaacg atacgctgaa aatgcgctaa aaatgactgt gtttgaatat cggttgattt
     7681 catccgtttg tgtaacctcg cgccggtttt gtcatgattt tgcattatag tgaattaaat
     7741 ttaaaccagt acagcgttgc ctcgccttgc cgtactatct gtactgtctg cggcttcgtc
     7801 gccttgtcct gatttttgtt aattcactat atttttgtca tgcggatatt tcacgggatg
     7861 acaaaacggg cgcaaaaaag cccgattgga aaatccgaat cgggcttttt tgtgatgttc
     7921 tgttcgattt gcgtactaac tgccggccgg agcgtccgcg cccggtttgg caggtcggat
     7981 tctcgaatcc gacggctatt tgagatggca ggcttttgtc ggatacaagt atccgaccta
     8041 cggctt
//
LOCUS       DAXIFS010000082         8046 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.082, whole genome shotgun sequence.
ACCESSION   DAXIFS010000082 DAXIFS010000000
VERSION     DAXIFS010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8046
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.082"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            2..1731
                     /gene="hrpB"
                     /locus_tag="ACFOCA_001237"
                     /pseudo
     CDS             2..1731
                     /gene="hrpB"
                     /locus_tag="ACFOCA_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion system transporter HrpB"
     gene            1840..7971
                     /locus_tag="ACFOCA_001238"
     CDS             1840..7971
                     /locus_tag="ACFOCA_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6987958.1"
                     /translation="MNKGLHRIIFSKKHSTMVAVAETANSQGKGKQAGSSVSVSLKTS
                     GDLCGKLKTTLKTLVCSLVSLSMVLPAHAQITTDKSAPKNQQVVILKTNTGAPLVNIQ
                     TPNGRGLSHNRYTQFDVDAKGAVLNNDRNNNPFLAKGSAQLILNEVRGAASKLNGIVT
                     VGGQKADVIIANPNGITVNGGGFKNVGRGILTTGAPQIGKDGALTGFDVRQGTLTVGA
                     AGWNDKGGADYTGVLARAVALQGKLQGKNLAVSTGPQKVDYASGEISAGTAAGTKPTI
                     ALDTTALGGMYADSITLIANEKGVGVKNAGTLEAAKQLIVTSSGRIENSGRIATTADG
                     TEASPTYLSIETTEKGAAGTFISNGGRIESKGLLVIETGEDISLRNGAVVQNNGSRPA
                     TTVLNAGHNLVIESKTNVNNAKGSANLSAGGRTTINDATIQAGSSVYSSTKGDTELGE
                     NTRIIAENVTVLSNGSIGSAAVIEAKDTAHIESGKPLSLETSTVASNIRLNNGNIKGG
                     KQVVLMADGDIQAKASNLNASGNLYIHAGKDLDLNADKDLSTQSISLRADNTALISSN
                     GNTLTAEKNLDIQAGSLSVRQSNLQSSGGNVQMSATKGNISLNQSWINASQNIDTAAL
                     QGNIISDGLTAVAEVGRVSLLANGNVDFNGLNTLIAEGDINAGSVGKGRLKMDNTDIY
                     ASAGDVKLVAGGQLDLGNGTVNGGHISLDSNKGSMVVQDVHLNARASLKVDADQTLTI
                     NNSKLNSGHNTQINTNHGHMTLNQLDAHSRRHMSISAQGKGKGKDSGQILQNDQQNSK
                     STLAADGVLSLNSSALQVLDNTTLRGGAINIKAGGGIIKRGYIDWETQDTATMRSAEL
                     KPLSGMMSIESGGDNPLTVEPGNRIVSAGDLAVNHNGTFQISARAGNNGNPSAQTASV
                     SAKGNIGIVAGEVDIDAANIAAGKDLALVATKGNISLNSIRNTFSNYQLKTDKHNITQ
                     QLTDVEQELSKLTSDPKYRKAQDLPQMLRRKYKRRDKVFGDSEARLRGLRAEINAADE
                     AWAELQSPVKALLERKQLLQQALLTVSQPGSGHENQGSTLSGQNIKLLAAGGIRIQGS
                     KVAATQQANIQAAGFLPAPAAEELQEGRLQSAIDISGVFDTFEYGQQGSDKYGYAIFS
                     RPSEISGKTGVTLSAPNANENSRISLSAANIEAENGKIKLQSYGDQSYYAGQGELYTL
                     ERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQGIDIKSGGNIDAYATAFDAPKG
                     SINIEAGRKLTLYAVEELNYDKLDSQKRRRFLGISYSKAHDTTTQVMKTALPSRVVAE
                     SANLQSGWDTKLQGTQFETTLGGATIRAGVGEQARADAKIILEGIKSSIHTETVSSSK
                     STLWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYIVDIPKGNLKTEIEKLAKQPEY
                     AYLKQLQTAKNVDWKQVQLAYDKWDYKQEGLTGAGAAIVVIIVTALTYGYGAAAAGSV
                     TAAGSSTAAAATTTAAATTTVSTAAAMQTAALASLYSQAAVAIINNKGDVGKALKDLG
                     TSDTVKQIVTSALTAGALNQMGADIAQLNSKVRTELFSSTGNQTIANLGGRLATNLSN
                     AGISAGINTAVNGGSLKDNLGNAALGALVNSFQGEAASKIKTTFSDDYVAKQFAHALA
                     GCVSGLVQGKCKDGAIGAAVGEIVAESILGGRNPATLSDAEKHKVISYSKIIAGSVAA
                     LNGGDVNTAANAAEVAVVNNALNFDSTPTNAKKHQPQKPDKTALEKIIQSIMPAHAAG
                     AMTNPQDKDAAIWISNIRNGITGPIVITSYGVYAAGWTAPLIGTAGKAAISTCMANPS
                     GCTVMVTQAAEAGAGIATGAVTVGNAWEAPVGALSKAKAAKQAAPKETINNLANLAKA
                     EQQILFRIAQRDTQLDAWKTGFNNRVRKGAGLLDASNIPITINGKTIKPVQAISLKGA
                     PVYSGVSEQEIFALYRQMTGQNPNFRVLPDGRLANGIISTGEWAGTKIALRNFSKTEN
                     STQARWTLDLQNPPSFIKGTKLELKFQ"
BASE COUNT         2408 a         1881 c         1968 g         1789 t
ORIGIN      
        1 catgaaattt tttcctgctc catgtctgtt ggttatcctg gctgtcatac cccttaaaac
       61 cttagctgcc gatgaaaacg atgcagaact tatccgttcc atgcagcgtc agcagcacat
      121 agatgctgaa ttgttaactg atgcaaatgt ccgtttcgag caaccattgg agaagaacaa
      181 ttatgtcctg agtgaagatg aaacaccgtg tactcgggta aattacatta gtttagatga
      241 taagacggcg cgcaaatttt cttttcttcc ttctgtgctc atgaaagaaa cagcttttaa
      301 aactgggatg tgtttaggtt ccaataattt gagcaggcta caaaaagctg cgcaacagat
      361 actgatcgtg cgtggctacc tattatccaa ccacagaata tggattcggg aattctgaaa
      421 ttacgggtat cagcaggcga aataggggat atccgctatg aagaaaaacg ggatgggaag
      481 tctgccgaag gcagtattag tacattcaat aacaaatttc ccttatatag gaacaaaatt
      541 ctcaatcttc gcgatgtaga gcagggcttg gaaaacctgc gtcgtttgtc gagtgttaaa
      601 acagatattc agattatacc gtccgaagaa gaaggcaaaa gcgatttaca gatcaaatgg
      661 cagcagaata aacccatacg gttcagtatc ggtatagatg atgcgggcgg caaaacgacc
      721 ggcaaatatc aaggaaatgt cgctttatcg ttcgataacc ctttgggctt aagcgatttg
      781 ttttatgttt catatggacg cggtttggcg cacaaaacgg acttgactga tgccaccggt
      841 acggaaactg caagcggatc cagaagttac agcgtgcatt attcggtgcc cgtaaaaaaa
      901 tggctgtttt cttttaatca caatggacat cgttaccacg aagcaaccga aggctattcc
      961 gtcaattacg attacaacgg caaacaatat cagagcagcc tggccgccga gcgcatgctt
     1021 tggcgtaaca gacttcataa aacttcagtc ggaatgaaat tatggacacg ccaaacctat
     1081 aaatacatcg acgatgccga aatcgaagtg caacgccgcc gctctgcagg ctgggaagcc
     1141 gaattgcgcc accgtgctta cctcaaccgt tggcagcttg acggcaagtt gtcttacaaa
     1201 cgcgggaccg gcatgcgcca aagtatgcct gcaccggaag aaaacggcgg cgatattctt
     1261 ccaggtacat ctcgtatgaa aatcattact gccggtttgg acgcagccgc cccatttatt
     1321 ttaggcaaac agcagttttt ctacgcaacc gccattcaag ctcaatggaa caaaacgccg
     1381 ttggttgccc aagataaatt gtcaatcggc agccgctaca ccgttcgcgg atttgatggg
     1441 gagcagagtc ttttcggaga gcgaggtttc tactggcaga atactttaac ttggtatttt
     1501 catccgaacc atcagttcta tctcggtgcg gactatggcc gcgtatctgg cgaaagtgca
     1561 caatatgtat cgggcacgca gctgatgggt gcagtggtcg gcttcagagg agggcataaa
     1621 gtaggcggta tgtttgctta tgatctgttt gccggcaagc cgcttcataa acccaaaggc
     1681 tttcagacga ccaacaccgt ttacggcttc aacttgaatt acagtttcta acctctgaat
     1741 tttttactga tatttagacg gtctttcctt atcctcagac cgtcaaactt tacctacgta
     1801 cttggcgcgc agtacgttca tcttcaaaat ggaatagaca tgaataaagg tttacatcgc
     1861 attatcttta gtaaaaagca cagcaccatg gttgcagtag ccgaaactgc caacagccag
     1921 ggcaaaggta aacaggcagg cagttcggtt tctgtttcac tgaaaacttc aggcgacctt
     1981 tgcggcaaac tcaaaaccac ccttaaaacc ttggtctgct ctttggtttc cctgagtatg
     2041 gtattgcctg cccatgccca aattaccacc gacaaatcag cacctaaaaa ccagcaggtc
     2101 gttatcctta aaaccaacac tggtgccccc ttggtgaata tccaaactcc gaatggacgc
     2161 ggattgagcc acaaccgcta tacgcagttt gatgtcgacg ctaaaggtgc tgtactgaac
     2221 aacgatcgca acaacaaccc gtttctggcc aaaggcagtg cgcagttgat tttgaacgag
     2281 gtgcgcggtg cggccagcaa actcaatggc atcgttaccg taggtggtca aaaggccgat
     2341 gtgattatcg ccaaccccaa cggcattacc gtgaacggcg gcggctttaa aaacgtcggc
     2401 cgcggtatct taactaccgg tgcgccccaa atcggcaaag acggtgcact gacaggattt
     2461 gatgtgcgtc aaggcacatt gaccgtagga gcagcaggtt ggaatgataa aggcggagcc
     2521 gactacaccg gggtacttgc tcgtgcagtt gctttgcagg ggaaattaca gggtaaaaac
     2581 ctggcggttt ctaccggtcc tcagaaagta gattacgcca gcggcgaaat cagtgcaggt
     2641 acggcagcgg gtacgaaacc gactattgcc cttgatacta ccgcactggg cggtatgtac
     2701 gcagacagca tcacactgat tgccaatgaa aaaggcgtag gcgtcaaaaa tgccggcaca
     2761 ctcgaagcgg ccaagcaatt gattgtgact tcgtcaggcc gcattgaaaa cagcggccgc
     2821 atcgccacca ctgccgacgg caccgaagct tcaccgactt atctctccat cgaaaccacc
     2881 gaaaaaggag cggcaggcac atttatctcc aatggtggtc ggatcgagag caaaggctta
     2941 ttggttattg agacgggaga agatatcagc ttgcgtaacg gagccgtggt gcagaataac
     3001 ggcagtcgcc cagctaccac ggtattaaat gctggtcata atttggtgat tgagagtaaa
     3061 actaatgtga acaatgccaa aggctcggct aatctgtcgg ccggcggtcg tactacgatc
     3121 aatgatgcta ctattcaagc gggcagttcc gtgtacagct ccaccaaagg cgatactgaa
     3181 ttgggtgaaa atacccgtat tattgctgaa aacgtaaccg tattgtccaa cggcagtatt
     3241 ggcagtgctg ctgtaattga ggctaaagac actgcacaca ttgaatcggg caaaccgctt
     3301 tctttagaaa cctcgaccgt tgcctccaac atccgtttga acaacggtaa cattaaaggc
     3361 ggaaagcagg tggtactgat ggctgatggc gacattcagg caaaagcctc caatctgaat
     3421 gcatccggca atctgtatat tcatgcaggt aaggatctgg atttgaatgc cgataaagac
     3481 ttatcaacac aaagtatcag cctgagggca gacaacaccg ccctcatcag tagcaacggt
     3541 aacaccttga ctgcagaaaa gaatctggat attcaggcag gtagcttgag tgtgcgtcaa
     3601 agtaatctgc aatccagtgg cggtaatgtg cagatgagcg cgactaaagg caacatcagc
     3661 ttgaatcaga gttggataaa tgccagtcag aatattgata cggcagcact tcaaggcaat
     3721 attatttcag acggtctgac tgctgttgcc gaagttggac gcgtatctct tcttgccaac
     3781 ggcaatgttg atttcaacgg tctaaatacc ttgattgcgg aaggagacat taatgctggt
     3841 tcagtcggta aaggccgtct gaaaatggac aataccgata tttatgcttc tgcaggcgat
     3901 gtgaaactgg ttgccggagg tcaattagat ttaggcaacg gcaccgttaa cggcggtcat
     3961 atcagcttag acagcaataa aggcagcatg gtggtgcagg atgtacacct gaatgcccgc
     4021 gcatcactga aagtggatgc ggatcaaact ttaaccatta ataacagcaa gctcaattcc
     4081 ggtcacaata cccagattaa tacaaatcat ggtcatatga cgcttaatca gcttgatgct
     4141 cattcacgtc gtcatatgag tatcagtgca cagggtaaag gcaaaggaaa agacagcggt
     4201 caaattttac aaaacgacca gcaaaacagt aaaagtactt tggcggcaga tggtgtattg
     4261 tcattgaaca gcagcgcatt acaggttttg gacaatacta ccctgcgcgg tggcgcgata
     4321 aacatcaaag ctggcggagg catcatcaaa cggggctata tcgattggga aacccaagat
     4381 acggctacta tgcgttcagc ggaactgaaa ccactgtctg gtatgatgtc gatagaatcg
     4441 ggcggtgata accctttaac cgttgaaccc ggtaaccgta tcgtttctgc aggtgatttg
     4501 gccgtgaacc acaacggcac attccaaatc agtgccagag caggaaataa cggcaatccg
     4561 agtgcgcaaa cagccagcgt ttcagctaaa ggcaatatcg ggattgtggc gggagaggtg
     4621 gatattgatg cagcaaatat tgccgcaggg aaagatttgg ctttagtggc aactaaaggg
     4681 aatatttcac taaacagtat taggaatacg tttagtaact atcaattgaa aacagataaa
     4741 cacaatatca cacagcaact tactgatgta gagcaggagc ttagtaagtt aacgagcgat
     4801 cctaaatatc gtaaagcaca ggatcttcca caaatgttga ggcgtaaata taagaggcgt
     4861 gacaaagtat tcggtgatag tgaggccaga ttacgtggtt tacgagcaga gataaatgct
     4921 gctgatgagg cttgggcaga actccaatcc ccagtaaaag cgttacttga acgtaaacaa
     4981 ttgttacaac aagccctttt aacagtttcc caaccgggta gtggtcacga aaaccaaggt
     5041 agcaccctta gcggtcaaaa tatcaaactg ctcgctgcag gtggtatccg tatccagggc
     5101 tccaaagttg ctgccaccca acaggcaaat atccaagctg caggattttt acctgcacca
     5161 gccgcagagg aactgcaaga aggtcgactt caatcagcca ttgacatcag cggtgtattt
     5221 gatacttttg aatatggtca gcaaggcagc gataaatacg gctatgccat tttcagcagg
     5281 ccatctgaaa tttcaggaaa aacaggtgtt accctctctg caccaaatgc caatgagaac
     5341 agccgcatca gtctgagtgc ggcaaacatc gaagctgaaa acggcaaaat caaactgcaa
     5401 tcctacggcg accaatccta ttacgccggg cagggcgaac tctatacctt agaacgccgc
     5461 agctacaaaa ccggcaaatg gtacaaccgc aaacacatta ccgaagtcaa agaacacaaa
     5521 aacgccaagc ccgacgcagt aaacctcagc gcatcccaag gcatcgacat caaatctggt
     5581 ggcaacatcg acgcctacgc caccgcattc gatgccccca aaggcagcat taacatcgaa
     5641 gccgggcgga aattgacact ctatgccgta gaagagctca actacgacaa acttgacagc
     5701 caaaaaaggc gcagatttct cggcatcagc tacagcaaag cacacgacac caccacccaa
     5761 gtcatgaaaa ccgcgctgcc ctcaagggta gttgcagaat cagccaacct ccaatcgggc
     5821 tgggatacca aactgcaagg cacacagttt gaaaccacac tgggtggcgc aaccatacgc
     5881 gcaggcgtag gcgagcaggc acgggcagat gccaagatta tcctcgaagg gatcaaaagc
     5941 agcatccaca cagaaaccgt gagcagcagc aaatctactc tatggcaaaa acaggcagga
     6001 cggggcagta acatcgaaac cttgcaattg ccgagtttca ccggtcccgt tgcgcccgta
     6061 ctgtccgctc ccggcggcta tatcgtcgac attccgaaag gcaatctgaa aaccgaaatc
     6121 gaaaagctgg ccaaacagcc cgaatacgcc tacctgaaac agcttcagac ggccaagaac
     6181 gtcgattgga aacaggtgca gctggcctac gacaaatggg actataaaca ggaaggcttg
     6241 accggagccg gtgcagcgat tgtggtgatt attgtaaccg ctctaactta tggatacgga
     6301 gcggctgcag cgggtagcgt aactgccgca ggaagtagta cagccgcagc tgcaacaacg
     6361 acagcggcag caactaccac tgtttctact gcagctgcca tgcaaaccgc agctttagcc
     6421 tccttgtata gccaagcagc tgtagccatc atcaataata aaggcgatgt aggcaaagca
     6481 ttaaaagatc tcggcaccag tgatacggtc aagcagattg ttacttccgc actgacggcg
     6541 ggtgcattaa accagatggg agcagatatt gcccaattga acagcaaggt aagaaccgaa
     6601 ctgttcagca gtacgggcaa tcaaaccatt gccaaccttg gaggcagatt ggccaccaac
     6661 ctcagcaatg caggtatctc agctggtatc aataccgccg ttaacggcgg cagcttgaaa
     6721 gacaacttag gcaatgccgc attgggagca ttggttaata gcttccaagg ggaagccgcc
     6781 agcaaaatca aaacaacctt cagcgacgat tatgttgcca aacagttcgc ccacgctttg
     6841 gcgggttgtg ttagcggact ggtacaggga aaatgtaaag atggggcaat tggcgcagca
     6901 gttggggaaa tcgtagctga atccatactt ggcggcagaa accctgctac actcagcgat
     6961 gcagaaaagc ataaagttat cagttactcg aagattattg cgggcagcgt ggcggcactc
     7021 aacggcggcg atgtgaatac tgcggcgaat gcggctgagg tagctgtggt gaataatgct
     7081 ttgaattttg acagcacccc taccaatgcg aaaaagcatc aaccgcagaa gcccgacaaa
     7141 accgcactgg aaaaaatcat ccaaagtatt atgcctgcac atgcggcagg tgcgatgact
     7201 aatccgcagg ataaggatgc tgccatttgg ataagcaata tccgtaatgg catcacaggc
     7261 ccgattgtga ttaccagcta tggagtttat gcagcaggtt ggacagctcc gctgatcggt
     7321 acagctggta aagcagctat cagcacctgt atggctaatc cttctggttg tactgtcatg
     7381 gttacgcagg ctgctgaagc gggcgcggga atcgccacgg gtgcggtaac ggtaggcaac
     7441 gcttgggaag ctccagtagg agcgttgtcg aaagcgaagg cggctaagca agctgctcct
     7501 aaagaaacaa taaacaattt ggcaaattta gccaaagcag aacagcagat tttattccgt
     7561 attgcccaac gcgatacgca actggatgca tggaagacgg gatttaacaa tagagtaagg
     7621 aaaggagcag gcttgcttga tgcaagtaat attccgataa ccattaacgg aaaaaccatc
     7681 aaacctgtac aagccataag cttaaaggga gcacccgttt acagcggcgt aagcgaacag
     7741 gagatttttg cgctttatcg gcagatgact ggccagaatc cgaattttag agttttgcct
     7801 gacggaagat tagcaaatgg cattatcagt actggagaat gggcaggaac aaaaattgca
     7861 ttaagaaatt tttcaaaaac agagaattca actcaagcac gatggacatt agatttgcag
     7921 aatcctccat catttattaa aggtactaaa ttggagctta aattccaata atttacaaag
     7981 gattttaccg tggatgagaa acaaaaaatt aagattcttg attttcaaat cgatttatcc
     8041 tcaatt
//
LOCUS       DAXIFS010000083         7874 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.083, whole genome shotgun sequence.
ACCESSION   DAXIFS010000083 DAXIFS010000000
VERSION     DAXIFS010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7874
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.083"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..1345)
                     /locus_tag="ACFOCA_001239"
     CDS             complement(<1..1345)
                     /locus_tag="ACFOCA_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase/DUF3482 domain-containing protein"
                     /protein_id="HFC6987959.1"
                     /translation="MNKQPLSLAVVGHTNTGKTSLLRTLLRDSGFGEVRNAPSTTRHV
                     EEAAISDGADTLVFLYDTPGLEDAGGVLEWLENHTDNRSDGIERLQQFLGSHGAHHDF
                     NQEAKVLRQVLQSDMAMYVIDAREPVLDKYRDELTILSWCAKPVMPVFNFTGGQLPES
                     WTTMLARRNLHVFAGFDTVAFDFEGELRLWENLATMLPERSTLDRLTAMRRREWQRLD
                     GEARREIADFLLDAAAFRQEVDENEDTATVLQTMQAEIRQLERQMQQRLFALYRFYHS
                     EIDGGDWMPQAFRQDPFDSELLKQYGIRTGTGAATGALIGLGLDIATLGGSLGLGTAI
                     GGFLGGILPNTRTISDKLAGRQTLHTDPETLTLLAARALDLLHVLQTRGHAAQSDIEL
                     HSRKAPWDAARLPPELNKARSHWKWSSLNTHRPETSRAERAGYVEKLQIRLSGKYS"
     gene            complement(1419..2759)
                     /locus_tag="ACFOCA_001240"
     CDS             complement(1419..2759)
                     /locus_tag="ACFOCA_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2868 domain-containing protein"
                     /protein_id="HFC6987960.1"
                     /translation="MLNPSRKLVELIRILDEGGFIFSGDPVQATEALRRVDGSTEEKI
                     IRRAEMIDRNRMLRDTLERVRAGSFWLWVAAATFAFFTGFSGTYLLMDNQGLNFFLVL
                     AGVLGMNTLMLAVWLAMLFLRVKVGRFFSSPATWFRGKDPVNQAVLRLYADEWRQPSV
                     RWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLGDSSSVRLVEMLAWLPA
                     KLGFPVPDARAVIEGRLNGNIADARAWSGLLVGSIACYGILPRLLAWAVCKILLKTSE
                     NGLDLEKPYYQAVIRRWQNKITDADTRRETVSAVSPKIVLNDAPKWAVMLETEWQDGE
                     WFEGRLAQEWLDKGVAANREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLS
                     EAAQGGAVVQLLAEQGLSDDLSEKLEHWRNALAECGAAWLEPDRAAQEGRLKDQ"
     gene            2902..3528
                     /locus_tag="ACFOCA_001241"
     CDS             2902..3528
                     /locus_tag="ACFOCA_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HFC6987961.1"
                     /translation="MYTGERFNTYSHLSGLILAAAGLALMLLKTIGHGDGYRIFSVSV
                     YGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWT
                     VFSLSWLLAAAGIAQELTIGRKSEKRLLSIAIYVVMGWMVLAVMKSLTASLPLAGLAW
                     LAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSVYGYVI"
     gene            complement(3592..5010)
                     /locus_tag="ACFOCA_001242"
     CDS             complement(3592..5010)
                     /locus_tag="ACFOCA_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6987962.1"
                     /translation="MENILSVLVGTVNRFLWDYLLIYALLGIGLFFTLYLGAPQITKL
                     GAGFKSVFGGLFAKGDKDDKSLSQFQALAVAISAQIGTGNVAGVATAITAGGPGAIFW
                     MWVSAVLGMSTIFAEALLAQKYRVVSHGKYIGGPAFYITHGLTPKIGRGAARFLSGFF
                     SIALIIALGFIGNATQANSIASAVTIAFDVPSLAVGIVLAVLAGMVVIGGVNRIANIA
                     QFVVPFMAVVYILCAVVILFEFSDYIVPMFNHIFTAAFNPEAVLGGAAGIGMREAIRF
                     GVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDTILVCTATALIILLTD
                     ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGWYYFGESNIRFLFRGR
                     HLGIYRALVLLAIVLGTLGKVDLVWSLSDMFNGFMVIPNLIALFLLRKEIRAIYDDYL
                     AQKKAGRDLSYQYEFHEFHDKG"
     gene            5337..6065
                     /locus_tag="ACFOCA_001243"
     CDS             5337..6065
                     /locus_tag="ACFOCA_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFC6987963.1"
                     /translation="MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPG
                     ANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCL
                     TDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGA
                     EDVVTNDDGSIEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQ
                     KLIDALEDLDDVQDVYTSAVLNLD"
     gene            complement(6124..6612)
                     /locus_tag="ACFOCA_001244"
     CDS             complement(6124..6612)
                     /locus_tag="ACFOCA_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HFC6987964.1"
                     /translation="MTPLFRKAVWLLFAVSVCAFAGSLAAQYVLGMEPCVLCISQRLC
                     VLATALCTAIVLMCRPRRRAGGLFGAVFISIPAVTGISVAAYQLWLQSLPPGTAPSCG
                     APWTFRLKGWSLFDWFEPVVRGFGNCAEPDYLLGVALPVWSAAYFLAVVLTVWWAWAR
                     AK"
     gene            complement(7370..7834)
                     /locus_tag="ACFOCA_001245"
     CDS             complement(7370..7834)
                     /locus_tag="ACFOCA_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HFC6987965.1"
                     /translation="MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRL
                     EREHYISGYHAHLNPHLLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVS
                     GEYDYLIKVRLPDMSAYRDMLGNILLQLPAASESRSYVVMEEVKENPVLDLD"
BASE COUNT         2038 a         2121 c         1971 g         1744 t
ORIGIN      
        1 cactatattt tcccgacagg cggatttgaa gtttctccac atatccggcg cgttcggcgc
       61 ggctggtttc ggggcggtgc gtattgagcg acgaccattt ccaatgactg cgggctttgt
      121 tgagttcggg cgggagtctg gcggcgtccc acggggcttt gcggctgtgc aactcgatat
      181 ccgattgtgc cgcgtgtccg cgcgtttgca ggacgtggag cagatcgagg gcgcgggcgg
      241 cgagcagggt cagggtttca gggtcggtgt gcaaggtttg gcggccggcg agtttgtcgg
      301 aaatggtgcg ggtattgggc aggatgccgc ccaaaaagcc gccgattgcc gtacccaatc
      361 cgagcgagcc gccgagtgtg gcgatgtcca gccccaagcc gatgagtgcg ccggttgccg
      421 cgcccgtgcc ggtgcggatg ccgtattgtt tgagcaattc gctgtcgaac gggtcttggc
      481 ggaaggcttg cggcatccag tcgccgccgt cgatttcgct gtggtagaaa cggtagaggg
      541 caaacagccg ctgctgcatc tgccgttcga gttggcgtat ttccgcctgc atggtttgta
      601 gcacggtggc ggtatcctcg ttttcgtcca cttcctgcct gaaggcggcg gcatcgagca
      661 ggaaatcggc gatttcgcgg cgcgcttcgc cgtccagccg ctgccattcg cgccggcgca
      721 tggctgtcag gcggtcaagt gtgctgcgtt cgggcaacat ggtggcgagg ttttcccaca
      781 ggcgtagttc gccttcaaaa tcaaaggcga cggtgtcgaa ccctgcgaaa acgtgcaggt
      841 ttctcctcgc cagcatggtt gtccacgatt cgggaagctg tccgccggta aagttgaaca
      901 cgggcataac tggtttggca caccatgaaa ggatggtcaa ttcatcccga tatttgtcga
      961 ggacgggctc gcgcgcgtcg atgacgtaca ttgccatatc gctttgcaag acttgccgta
     1021 agactttggc ttcctgattg aaatcatggt gcgcgccgtg gctgccgaga aactgttgca
     1081 gccgttcgat gccgtctgaa cgattgtccg tatggttttc cagccattcc agcacgccgc
     1141 ccgcgtcttc aagtccgggc gtgtcgtaca ggaaaaccag cgtgtctgcg ccgtcgctga
     1201 tggcggcttc ttcgacatgg cgtgtggtcg atggggcgtt tctgacttcg ccgaaaccgc
     1261 tgtcgcgcaa cagggtacga aggagcgagg ttttgccggt attggtatgc ccgacgacgg
     1321 cgagggaaag gggttgtttg ttcatgatgt ttttgaagaa tggattttca gacggtcttt
     1381 tttcagaatg gcggcttaac agaacatttc aagtgagttt attggtcttt caaacgccct
     1441 tcctgcgccg ccctgtcagg ctcaagccac gccgcgccgc attcggccag cgcgttacgc
     1501 caatgttcca gcttttccga aaggtcgtct gaaagcccct gttccgccaa aagctgcacc
     1561 accgcgccgc cctgcgccgc ttccgaaagt cggacgatct gccgcaacac gccgcggtcg
     1621 ggcacagttt gggcgcgcac gccgataagc agttgcgccg gtttctgctt cagctctgtc
     1681 tccagcgcgg caacctgttc ccgattggcg gcaacgccct tatccagcca ttcctgcgcc
     1741 agcctgccct cgaaccattc gccgtcctgc cattcggtct ccagcatgac cgcccatttc
     1801 ggcgcatcgt tcaagacgat tttcggcgaa acggcggaca cggtttcccg acgcgtatcc
     1861 gcatcggtga ttttgttctg ccagcggcgg atgaccgcct gataataggg tttttccaaa
     1921 tccaatccgt tttcgcttgt tttcaaaagg attttgcata ccgcccaagc caagaggcgc
     1981 ggcaggatgc cgtagcaggc gatactgccg accagcagcc ccgaccaagc ccgcgcatcg
     2041 gcaatattgc cgttcagacg gccttcgatg accgcccgcg catcaggcac gggaaaaccc
     2101 agtttcgcag gcagccatgc caacatttcc accagccgta ccgaagacga atcgcccaac
     2161 agcgtgcttt cccagttgaa cgtatattgc cgcaccaaaa gcagcaacaa taccgacacc
     2221 agcattccga gcagcgtgca gagccacagg ctgtgcgacg ttgcgcctat tttccaacgt
     2281 accgaaggtt gccgccactc gtccgcatac agccgcaaca ccgcctgatt tacagggtct
     2341 ttgccccgaa accacgtcgc cggactgctg aaaaaacgcc ccactttcac gcgcaggaac
     2401 aacattgcca accatactgc cagcatcagc gtattcatgc ccaacacgcc cgccaaaacc
     2461 aaaaagaaat tcagaccctg attgtccatt agaagataag tgcctgaaaa accggtaaaa
     2521 aacgcaaacg tcgccgccgc cacccacaac cagaacgacc ccgcacgcac acgttccaat
     2581 gtgtcccgca gcatacggtt cctgtcgatc atctccgccc gacggatgat tttttcctcc
     2641 gtactgccgt ccacgcggcg caaagcctcc gtcgcctgca cgggatcgcc gctgaaaata
     2701 aaaccgcctt cgtccaaaat acggatcagc tcaaccagtt ttcgggatgg attcaacata
     2761 aaatgccgtc tgaaaataaa aaacagattt taacacacgc attttcaaga atattcacag
     2821 tgtaggcaaa gagtaaatct cacacagaag caaaagtatc ggcgtaaact gactgcctct
     2881 actttcccga aagattgtgc gatgtataca ggcgaacgct tcaatactta cagccatttg
     2941 agcggtttga ttctggcggc ggcaggtttg gcgctgatgc tgctgaaaac cataggacac
     3001 ggggacggct accgtatctt cagcgtatcg gtttacggca tcagccttct tctgctctat
     3061 ttgagttcct cgctgtacca cggaattgca gccggaaaac tgaaaagcat tttgaaaaaa
     3121 accgaccact gcatgattta tgtgctgatt gccggaagct acacaccgtt tgcactggtt
     3181 tctttgagaa acgggccggg ctggacggta ttttcactgt cctggctgct ggcggctgca
     3241 ggaatcgcac aagaactcac catcggacgg aaaagcgaaa aacgactgct gtctattgcg
     3301 atttatgtcg tcatgggttg gatggtcttg gcggtaatga aatccctgac agcctcactc
     3361 ccgctggcag gactggcttg gctggcggca ggcggtatgc tgtacagcgt cggcatttac
     3421 tggtttgtaa acgatgaaaa aatccgacac gggcacggaa tctggcatct gttcgtattg
     3481 ggcggcagca tcacccaatt tgtcagtgtg tacggttatg taatctgaat gccgtctgaa
     3541 aagcaaaacc tcccgatcct gaagattggg aggttttctg tttgccggac atcagccctt
     3601 gtcgtggaac tcgtgaaatt catactgata ggacaaatcc cgacccgctt ttttctgtgc
     3661 caaataatca tcataaatgg cacggatttc cttacgcaac aaaaacaggg ctatcaagtt
     3721 cgggataacc ataaagccgt tgaacatatc ggacaggctc caaaccaaat cgactttgcc
     3781 gagcgtaccc aaaacgatgg caagcagaac caatgcgcga tagatgccca agtgtcttcc
     3841 cctgaaaaga aaacggatgt tggactcacc gaaataatac cagccgataa tggtcgtcaa
     3901 ggcgaaaaag gtcagacaca cggcaagcaa ttgcgaaccg aagcccggaa atgccttgtt
     3961 aaaggcaaac tgggtaaccg ccgcgccctg ttcgcccgaa aggttggcat cagtcagcag
     4021 gataatcaat gccgtagccg tacataccaa aatcgtatcg ataaacacac cgacaaatgc
     4081 cgccatacct tgctgcacag gatgcttcac atcagcggtt gcatgtgcat gcggggtaga
     4141 acccatacct gcttcgttgg aaaacagacc gcgcgccacg ccgaaacgta tcgcttcacg
     4201 cataccgata cccgcagcac cgcccaaaac ggcttcagga ttgaaggcgg cggtaaagat
     4261 gtggttgaac atcggcacaa tatagtcgga aaattcaaac aggataacga cggcgcacaa
     4321 aatataaaca accgccataa acggcacgac aaactgggca atattggcaa tacggttcac
     4381 gccgccaatc acaaccatgc ccgcaaggac ggcaagcaca ataccgactg ccaaagaagg
     4441 cacatcaaat gcaatggtaa cggcagaagc aatggagttt gcctgtgtcg cattaccgat
     4501 aaagcccaat gcgataatca acgcaatgga gaaaaagccc gacaggaaac gcgccgcgcc
     4561 cctgccgatt ttcggagtca gaccgtgcgt aatataaaac gccggcccac cgatgtattt
     4621 gccgtggctg acgacgcggt atttctgcgc cagcagtgcc tccgcaaaaa tcgtggacat
     4681 ccccaaaacg gcagaaaccc acatccaaaa aatcgcgccc ggcccgcctg cggtgatggc
     4741 ggtcgccacg ccggcgacgt tgcccgtacc gatttgcgcg gatatggcaa ccgccaacgc
     4801 ctgaaactgc gataaagact tatcgtcttt atcgcctttg gcaaacaagc cgccgaatac
     4861 agatttgaat cccgcaccca gcttggtaat ctgcggcgca ccgagataca gcgtaaaaaa
     4921 caggccgata cccaaaagcg cgtaaatcag caggtagtcc caaaggaacc gattgactgt
     4981 acccaccaga acagacaata tattttccat aaaataaacc ttatcttaca attaaaatga
     5041 ctgccttcca aaagacattc caataaggaa acacggcgag cagaccgtat ttgccgcaac
     5101 agatgcctta aattgtcaac aatcggggag aagctgcgcc atcataccgt aaaatatcgt
     5161 taattaaaac atttctttat ttttaagcgg aaagcggagg aaatcgcttt cagacggcat
     5221 cgacaacggc acggcataaa acaggatatt ttgggtactt gcaacttatg ttaaaatgcc
     5281 gaccgtaaaa aatctgacaa aaacagatta attatttgaa ataagaaagg aaatttatgg
     5341 caggtcatag caagtgggcg aatatccagc ataaaaaagc ccgtcaggat gccaaacgcg
     5401 gcaaaatctt cacccgttta atcaaagaaa tcaccgttgc ggcgcgtatg ggcggcggcg
     5461 atcccggcgc aaatccgcgc ctgcgcctgg ctttggaaaa agcagccgaa aacaatatgc
     5521 ccaaagacaa tgtgcaacgc gccatcgaca aaggcacggg caacttggaa ggcgtggaat
     5581 acatcgaatt gcgctacgaa ggctacggca tcggcggcgc ggctttgatg gtggactgcc
     5641 tgaccgacaa caaaacccgc accgttgcgg acgtacgcca cgcgtttacc aaaaacggcg
     5701 gcaacttggg taccgacggc tgcgtggcgt tcaacttcgt gcatcagggc tatttggtat
     5761 tcgaacccgg cgttgacgaa gacgcgctga tggaagcggc tttggaagcc ggtgcggaag
     5821 acgtggttac caacgacgac ggttccatcg aagtcattac cgcgccaaac gattgggcgg
     5881 gcgtaaaatc cgctttggag gcggcaggtt acaaatccgt tgacggcgac gttacgatgc
     5941 gcgcccaaaa cgaaaccgaa ctctccggcg acgatgccgt caaaatgcaa aaactgattg
     6001 acgcgctgga agacttggac gacgtgcaag acgtttacac ttccgccgta ttgaatttgg
     6061 actgatacgc agcacagcag acatacaata aaatgccgtc tgaacctttc agacggcatt
     6121 gatttattta gcccttgccc acgcccacca aaccgtcagg acaaccgcca gaaaatacgc
     6181 cgcgctccaa acaggcaaag caacccctaa cagataatcc ggttcggcac aatttccgaa
     6241 cccgcgcacg acaggctcga accaatcaaa caaagaccag cccttcaagc ggaacgtcca
     6301 cggcgcaccg cacgaaggag cggttcccgg cggcagcgac tgcaaccaca actgatatgc
     6361 cgcaacagaa atacccgtaa cggccggaat gctgataaag acagcaccga acaaaccgcc
     6421 cgcccttctt cttggtctgc acatcaggac aattgccgta cacaatgcgg ttgccaaaac
     6481 gcataaccgc tgactgatac acaaaacgca aggctccata cccaaaacat actgtgccgc
     6541 caaagaaccg gcaaatgcac agaccgaaac ggcaaacagc agccaaacgg cttttctaaa
     6601 taacggggtc attttctcaa cacaccaatc aaaataccga tatgccgatt ttgctggata
     6661 tatcccgaga tggcaaggga cgaatcgaca ccggcgcagg tgcggacgat ttcggttttc
     6721 ccgatataca caagacctga caagggacaa aacggcgatt tgcccgcaca atgcccgcaa
     6781 aaaaatacat ccggaggatt tgaatttcgg caaatttagc gaatcaaaag tttatttcaa
     6841 tgaaattata tgattttttt gaataagcgg attgacaggt ttttgaagga atttgttacc
     6901 ggatagccat cgggcaagtt ttttgcaaaa tttgaatcgg tcgggtaaat tttcaaaaaa
     6961 taattgacag cggataagaa acggcggata attcccgccg tcgagttgct tgatgcagct
     7021 tgatttttct cctctatttc tcctttgtag acttggcaca cattcaactg gatgtgtgca
     7081 tttttttatc tccgcttttt ttgaaattta attactttta ttgtttgaaa ttccattctt
     7141 taagaaattt aacaagaaaa acgcttgctt tttgaccgga aaagctgcat aattcgttcc
     7201 gttagctggt tcgagtagtc agttaatagt ttctcctcta tttctccttt gtagacttgg
     7261 cacacattct attgaatgtg tgcatttttt tatctgaagc aacaagcctc tgtgcgtgat
     7321 gttgttatgt ttcatttagg tgtcaaaccg catacccggt ctgaaatatt caatccaaat
     7381 ccaaaaccgg attttctttg acctcctcca tcacaacata actcctactc tccgaagcgg
     7441 caggcagttg caataggata ttgcctagca tatcccgata ggcagacata tcgggcaaac
     7501 gtactttaat cagatagtcg tattcgcccg acaccaagtg gcattccata atttgcggaa
     7561 ttttcagcac ttcttttttg aaatcttcga aaatattgcc cgatttggat tgcagcttca
     7621 gctcgacaaa aaccaatagc ggtttgccca acagatgggg attgaggtgg gcgtgatagc
     7681 cggaaatata atgttcccgc tccaaacggc gcaccctctc tgtaacgggc gtggtggaca
     7741 agcctacctt ctcggcaagc tccgtcatcg ggatgcgggc attctgttgg aggatcttaa
     7801 gaatgcggaa atcgatttta tctagttctt tcatttggat tgccttgtat ttattattga
     7861 ttttaacaaa taga
//
LOCUS       DAXIFS010000084         7752 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.084, whole genome shotgun sequence.
ACCESSION   DAXIFS010000084 DAXIFS010000000
VERSION     DAXIFS010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7752
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.084"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(308..730)
                     /locus_tag="ACFOCA_001246"
     CDS             complement(308..730)
                     /locus_tag="ACFOCA_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HFC6987966.1"
                     /translation="MQVTSKWIDGMCFVGTTESGHSVVMEGSAAEGAAKRGPSPLEML
                     LLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKE
                     SAIERAVQMSAEKYCSASIMLGKAAKITHSFEIAGADK"
     gene            complement(848..1519)
                     /locus_tag="ACFOCA_001247"
     CDS             complement(848..1519)
                     /locus_tag="ACFOCA_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HFC6987967.1"
                     /translation="MMKTFKNIFSAAILSAALPCAYAAGLPQSAVLHYSGSYGIPATM
                     TFERSGNAYKIVSTIKVPLYNIRFESGGTVVGNTLHPTYYRDIRRGKLYAEAKFADGS
                     VTYGKAGESKTEQSPKAMDLFTLAWQLAANDAKLPPGLKITNGKKLYSVGGLNKAGTG
                     KYSIGGVETEVVKYRVRRGDDTVMYFFAPSLNNIPAQIGYTDDGKTYTLKLKSVQING
                     QSAKP"
     gene            complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFOCA_001248"
     CDS             complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFOCA_001248"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFC6987968.1"
                     /translation="MKNIVILISGRGSNMQAIVNAAIPNVRIAAVLSNSETAAGLQWA
                     AERGIPTDSLHHKNFESRLAFDTAMMEKIDAYQPDLVVLAGFMRILTPEFCAHYEGRL
                     MNIHPSILPSFTGLHTHERALEAGCRVAGCTIHFVTAELDCGPIVSQGVVPILDGDTA
                     DDVAARVLAVEHKLYPKAVADFAAGRLIIEGNRVRNSENADAARFLTA"
     gene            complement(2268..3074)
                     /locus_tag="ACFOCA_001249"
     CDS             complement(2268..3074)
                     /locus_tag="ACFOCA_001249"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6987969.1"
                     /translation="MNTIFKISALTLSAALALSACGKKEAASEPAAASAAQGDTSSIG
                     STMQQASYAMGVDIGRSLKQMKEQGAEIDLKVFTEAMQAVYDGKEIKMTEEQAQEVMM
                     KFLQEQQAKAVEKHKADAKANKEKGEAFLKENAAKDGVKTTASGLQYKITKQGEGKQP
                     SKDDIVTVEYEGRLIDGTVFDSSKANGGPVTFPLSQVIPGWTEGVQLLKEGGEATFYI
                     PSNLAYREQGAGDKIGPNATLVFDVKLVKIGAPENAPAKQPAQVDIKKVN"
     gene            complement(3333..3773)
                     /locus_tag="ACFOCA_001250"
     CDS             complement(3333..3773)
                     /locus_tag="ACFOCA_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HFC6987970.1"
                     /translation="MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQEL
                     DKMLWQYEAESFIPHEIWEMEEAMPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTA
                     PVLPARVLEIVGNSLEDLADARERFTAYRRSGFAIEHHGMEGKA"
     gene            complement(3836..5242)
                     /locus_tag="ACFOCA_001251"
     CDS             complement(3836..5242)
                     /locus_tag="ACFOCA_001251"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFC6987971.1"
                     /translation="MEFSTKTEILQEQQAGAQLFVCTEEAQLNHPTALALLSSLEEGQ
                     NFADTKIPTGNGLQAVAVCCLKSTGRAALNKAAAEAAKWAQNQETVNVDIHAFDEAQA
                     AAVAEAFAIAFGNAAYRFDRYKKEAKPAKFETAVFHSAHEAVVKEALRVAEAQVYGQS
                     LCRDLGNAAPNECTPEFLARTAKAEAEKLGAHAKIIEKDYIKENMGSFWSVAKGSVED
                     PYLVELSYFGAADKEAAPVVLVGKGITFDTGGISLKPGLNMDEMKFDMCGAATVISTF
                     CAAVKLQLPINLIAVVATCENMPSGAANKPGDVVKSMKGLTIEVLNTDAEGRLILCDA
                     LTYAEQFKPKAVIDVATLTGACIVALGHDVSGVMGNNQDLVDSLLAASYNVDDKAWQL
                     PLFETYKDQLKSNFADIPNIGTPGAGTITAATFLSYFTEGYPWAHLDIAGTAWKSGAE
                     KGATGRPVPLLLNYLRNL"
     gene            5412..6527
                     /gene="lptF"
                     /locus_tag="ACFOCA_001252"
     CDS             5412..6527
                     /gene="lptF"
                     /locus_tag="ACFOCA_001252"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HFC6987972.1"
                     /translation="MIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVA
                     IDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPV
                     MQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY
                     FVETFDTESGIMKNLFLREQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPG
                     RADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVS
                     VLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLP
                     MHIIMFVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK"
     gene            6524..7594
                     /gene="lptG"
                     /locus_tag="ACFOCA_001253"
     CDS             6524..7594
                     /gene="lptG"
                     /locus_tag="ACFOCA_001253"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HFC6987973.1"
                     /translation="MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSY
                     GIWEMLGYTALKMPARAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLI
                     LSQFGFIFAIATVALGEWVAPTLSQKAENIKAAAINGKISTGNTGIWLKEKNSIINVR
                     EMLPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSI
                     AAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQNTRIYAIAWWRKLVYP
                     AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLA
                     GALPTIAFALLAVWLIRKQEKR"
BASE COUNT         1679 a         2118 c         2038 g         1917 t
ORIGIN      
        1 aataaattaa tatatggctt aaaataacgg gatgcccgcc ttccgcccgc ccgcagaagc
       61 aggcgggtat cattttaaaa cgcggcattt aaaatttgac cgaaaattgt tgacaatccg
      121 gaatcaagtc tgcacaatac cccgacaagt ccaagtatta taaaggctga ataaagagga
      181 aacagcaggc agatatattc gggaggtgca gtccgaatat atctgctttt ttatgcgcct
      241 ccggattgcc tgccgcacct ttcccttcag acggcatcag ccgtttcccc ataatgccgc
      301 ccgatgccta tttatctgcc ccggcaattt caaaactgtg ggtaatcttt gccgctttgc
      361 ccaacataat cgaagccgaa cagtattttt cggcagacat ctgaacggcg cgctcaatgg
      421 ccgattcttt caaatcatgc ccgaatactt tgaaatggat gtggatttcg gtaaacacgc
      481 gcggcgcatc gtccgcccgt ttcgccgtaa ccgtcgcacg gcagtcagtc actttctgac
      541 gctgtttttc ggcaatcatc accacatcga tgctcgaaca gcccgccacg cccaacagca
      601 gcatttccaa agggctgggc ccgcgcttgg ccgcaccttc tgccgccgaa ccctccataa
      661 cgacgctgtg cccgctttcc gtcgtgccga caaagcacat tccgtctatc cattttgatg
      721 taacctgcat ggtgtcattc ctgaaaatag cgttaaaacc gctttgcata tggcgttatt
      781 gtaaacaatt tcaagcggct tatgcagaaa tatggacaaa acggcaaaaa aacgcctgaa
      841 aaccgattta cggtttggcg gactggccat tgatctgcac cgatttgagt ttcagcgtat
      901 aggttttgcc gtcgtcggta tagccgattt gtgccggaat attgttcagg gacggtgcga
      961 agaaatacat taccgtatcg tcgccgcgcc gcacccgata tttgacgact tcggtttcca
     1021 cgccgcctat gctgtatttt cctgtacccg ccttattcaa accgccgacg gaataaagtt
     1081 ttttgccgtt ggtgattttc agccccgggg ggagtttcgc gtcatttgcc gccaactgcc
     1141 aggcaagcgt gaacaaatcc atagccttgg ggctttgctc ggttttgctc tcgcccgctt
     1201 tgccgtaggt tacgctgccg tcggcgaatt tggcttccgc atacagtttg cccctgcgta
     1261 tgtctctata gtaggtaggg tgcagggtat tgccgacaac cgtaccgccg gactcgaaac
     1321 ggatattgta tagcggcact ttaatcgtcg aaacgatttt gtaagcattg ccgctgcgtt
     1381 caaatgtcat cgtggcggga atgccgtagc tgccggaata gtgcagcacg gcggattggg
     1441 gcagccctgc cgcatacgcg cacggcaggg cggcggacaa aatggcggcg gaaaatatat
     1501 ttttaaaagt cttcatcatt tgctcccgcc cggtttacgc cgtcagaaaa cgggcggcat
     1561 cggcgttttc cgaatttctg acgcggtttc cctcgataat caggcggccg gcggcaaaat
     1621 cggcaacggc tttcggatag agtttatgct cgacagccaa aacccgggcg gcaacatcgt
     1681 ctgccgtatc gccgtcgagt atcggcacaa ccccttgcga tacaatcggg ccgcaatcca
     1741 gttcggcagt aacgaaatgg atggtgcagc cggcaacgcg acaacctgcc tccaaagcgc
     1801 gttcgtgcgt atgaagtcca gtaaacgagg gaaggatgga cgggtgaatg ttcatcagcc
     1861 tgccttcgta atgggcacag aactcagggg tcagaatccg cataaaacct gccaaaacca
     1921 ccaagtcggg ttgatatgcg tcgatttttt ccatcatggc ggtatcgaag gcaagtcgtg
     1981 attcaaagtt tttatgatgc aggctgtcgg tcgggatgcc gcgttcggcc gcccattgca
     2041 aaccggcagc cgtttcgctg ttgctcaaca cggcggcaat gcggacgttg ggaatggcgg
     2101 cattgacgat tgcctgcata ttgctgccgc gtccggaaat caggatgacg atgtttttca
     2161 taatggtacg cttttgaaag ggatgccgtc tgaaccgctg tttggtggtt tcagacggca
     2221 tttgccgtaa aaatgcccga aaacctgttt cgggcatgga ttcggactta atttactttt
     2281 ttgatgtcga cttgagccgg ctgcttggcg ggcgcgtttt cgggtgcgcc gattttgacc
     2341 agtttcacat caaataccaa agtggcgttc gggccgattt tgtcgcccgc accctgttcg
     2401 cggtaggcaa ggttggacgg gatgtagaac gtggcttcgc cgccttcttt cagaagctgt
     2461 acgccttcgg tccaacccgg aatcacttgg ctcaaaggga aggtgaccgg gccgccgttg
     2521 gctttgctgc tgtcgaatac cgtaccgtca atcaggcggc cttcgtattc cacggtaacg
     2581 atgtcgtctt tggacggctg tttgccttca ccctgtttgg tgattttgta ttgcaggccg
     2641 gaagcagtgg tcttcacgcc gtctttggcg gcattttctt tcagaaaggc ttcgcctttt
     2701 tctttattgg ccttcgcgtc cgccttgtgt ttttctacgg ctttagcctg ttgttcctga
     2761 aggaatttca tcatgacttc ctgagcctgc tcttcagtca ttttgatttc tttgccgtca
     2821 tacactgcct gcatggcttc ggtaaagact ttcaaatcga tttccgcacc ctgttccttc
     2881 atttgcttca gggagcgtcc gatgtccacg cccatcgcat agcttgcctg ctgcatcgtg
     2941 ctgccgatcg aagaggtgtc gccctgcgcg gcagaagcgg cggcaggttc ggatgcggct
     3001 tcttttttgc cacaggcgga aagtgccaaa gcggcggaaa gggtcagtgc gctgattttg
     3061 aaaatggtgt tcatgatgga tcttcgctgt cgataaggtc ggaaaaacgg gattatagcc
     3121 gagtttgaat gtttcaacac acaggatgac acataaagcg tcaatcgtgt gttgccctgt
     3181 tttggaaggg attgaacctt ccaaaataag ttttgattct accgccccga gggacagatg
     3241 tccaagtggc ggggttcaac cgataaggaa attttaatca aatagaatca agcctgttta
     3301 aattttgtaa atgcggcatt tcagacggca ttttatgcct tgccctccat gccgtgatgt
     3361 tcgatggcaa aaccgcttcg gcggtaggcg gtaaagcgtt cgcgcgcgtc ggcgagatct
     3421 tccaagctgt tgccgacgat ttccaaaacg cgcgcgggca agaccggagc ggtgttccaa
     3481 aaaccgtcgg acaggttcaa aacagtcatg ccttcgggaa ttcggggcgg attgccgccg
     3541 caagcaagca ggacggatgt ttcagacggc atggcttctt ccatttccca aatttcgtgc
     3601 ggaatgaaac tctcggcttc gtattgccaa agcattttgt ccaattcctg aagccgcccg
     3661 aacgaatcgg accacaccag tatcctgccg ccgtcccgaa tcgcacgggc aatcaggcgg
     3721 caggtgaaaa tcggaacttg ggcaacgtgc gtgtaaaagg tggctttcgg catattgttt
     3781 gagcatttgg caggacgatg ccgtctgaaa ggcttcagac ggcattgtgg caaaattaaa
     3841 gattccgcag atagttcagc agcaagggaa cgggacggcc agtcgcacct ttttccgctc
     3901 cggatttcca cgccgtaccc gcgatgtcaa ggtgcgccca cgggtagcct tcggtgaagt
     3961 aagacaggaa tgttgcggcg gtaatcgtgc ccgcgccggg cgtgccgata ttggggatgt
     4021 cggcaaagtt ggatttgagc tggtctttgt aggtttcaaa gagcggcagt tgccacgctt
     4081 tgtcgtccac gttgtaggaa gcggcaagca ggctgtcgac caaatcttga ttgttgccca
     4141 tcacgccgct gacatcgtgc cccaaggcga caatacacgc gccggtcagg gtggcgacgt
     4201 cgatgacggc tttgggtttg aactgttcgg cgtaagtgag cgcgtcgcac aaaatcagac
     4261 ggccttcggc atcggtgttc aacacttcga tggtcagacc tttcatactt ttcacgacat
     4321 cgcccggttt gtttgccgcg ccggaaggca tattttcaca agtggcgacg acggcaatca
     4381 ggttaatcgg cagttgcagt ttgacggcgg cgcagaaggt gctgatgacg gttgccgcgc
     4441 cgcacatatc aaacttcatt tcgtccatgt tcaggccggg tttgagggaa atgccgccgg
     4501 tgtcgaaggt aatgcctttg ccgaccaata ccacaggcgc ggcttctttg tccgccgcac
     4561 cgaaatagct cagttcgacc aaatagggat cttcgacact gcctttggcg accgaccaaa
     4621 acgaacccat gttttctttg atgtagtctt tttcgatgat tttggcgtgc gcgcccagtt
     4681 tttcggcttc ggctttggcg gtgcgcgcta aaaattcggg cgtgcattcg ttgggcgcgg
     4741 cgttgcccaa gtcgcggcag aggctttgtc cgtaaacttg cgcttcggcg acgcgcaagg
     4801 cttctttaac gacggcttcg tgtgcgctgt ggaacacggc ggtttcaaat ttggcgggct
     4861 tggcttcttt tttgtagcgg tcgaaacggt aggcggcgtt gccgaacgca atcgcaaacg
     4921 cttcggctac ggcggcggct tgcgcttcat cgaaggcatg gatgtccaca ttgaccgttt
     4981 cctgattttg cgcccatttg gcggcttcgg cggcggcctt gttcaatgcg gcgcggccgg
     5041 tgcttttcag acagcatacg gcaacagcct gcaaaccgtt gcctgtcggg atttttgtgt
     5101 cggcaaaatt ttgaccttct tcaagcgaag acaaaagggc aagggcggtc ggatggttta
     5161 attgcgcctc ttcggtgcag acaaataact gtgcgcctgc ctgctgttcc tgcaagattt
     5221 cggtttttgt gctaaattcc acgtttattc tcctgattga gacggttgtc ggtagttttc
     5281 ggacggcctt tcgctcaaaa gaccgtctga agacggctgg cacgattgta ccccatttga
     5341 agcaccgtct gaaaccttgc tcggacaatc cgcctgcgcc gaaccgctta ccgccccctg
     5401 accgcgattc tatgatttat caaagaaacc tcatcaaaga actctctttt accgccgtcg
     5461 gcattttcgt cgtcctcttg gcggtattgg tctccacgca ggcaatcaac ctgctcggcc
     5521 gtgccgccga cgggcgtgtc gccatcgatg ccgtgttggc attggtcggc ttctgggtca
     5581 tcggtatgac gccgcttttg ctggtgttga ccgcatttat cagtacgttg accgtgttga
     5641 cccgctactg gcgcgacagc gaaatgtcgg tctggctatc ctgcggattg gcattgaaac
     5701 aatggatacg cccggtgatg cagtttgccg tgccgtttgc cgttttggtt gccgtcatgc
     5761 agctttgggt gataccgtgg gcagagctac gcagccgcga atacgctgaa atcctgaagc
     5821 agaagcagga attgtctttg gtggaggcag gcgagttcaa cagtttgggc aagcgcaacg
     5881 gcagggttta ttttgtcgaa accttcgata ccgaatccgg catcatgaaa aacctgttcc
     5941 tgcgcgaaca ggacaaaaac ggcggcgaca acatcatctt cgccaaagaa ggtaacttct
     6001 cgctgaacga caacaaacgc acgctcgaat tgcgccacgg ctaccgttac agcggcacgc
     6061 ccggacgcgc cgactacaat caggtttcct tccaaaaact caacctgatt atcagcacca
     6121 cgcccaaact catcgacccc gtttcccacc gccgtaccat tccgaccgcc caactgattg
     6181 gcagcagcaa cccgcaacat caggcggaat tgatgtggcg catctcgctg accgtcagcg
     6241 tcctcctact ctgcctgctt gccgtgccgc tttcctattt caacccgcgc agcggacata
     6301 cctacaatat cttgattgcc atcggtttgt ttttaattta ccaaaacggg ctgaccctgc
     6361 tttttgaagc cgtggaagac ggcaaaatcc atttttggct cggactgctg cctatgcaca
     6421 tcatcatgtt cgtcatcgca atcgtacttc tgcgcgtccg cagcatgccc agccagccct
     6481 tctggcaggc ggttggcaaa agtctgacat tgaaaggcgg aaaatgaacc tgatttcacg
     6541 ttacatcatc cgtcaaatgg cggttatggc ggtttacgcg ctccttgcct tcctcgcttt
     6601 gtacagcttt tttgaaatcc tgtacgaaac cggcaacctc ggcaaaggca gttacggcat
     6661 atgggaaatg ctgggctaca ccgccctcaa aatgcccgcc cgcgcctacg aactgatgcc
     6721 cctcgccgtc cttatcggcg gactggtctc tctcagccag cttgccgccg gcagcgaact
     6781 gaccgtcatc aaagccagcg gcatgagcac caaaaagctg ctgttgattc tgtcgcagtt
     6841 cggttttatt tttgctattg ccaccgtcgc gctcggcgaa tgggttgcgc ccacactgag
     6901 ccaaaaagcc gaaaacatca aagccgccgc cattaacggc aaaatcagca ccggcaatac
     6961 cggcatttgg ctcaaagaaa aaaacagcat tatcaatgtg cgcgaaatgt tgcccgacca
     7021 taccctgctg ggcattaaaa tctgggcccg caacgataaa aacgaactgg cagaggcagt
     7081 ggaagccgat tccgccgttt tgaacagcga cggcagttgg cagttgaaaa acatccgccg
     7141 cagcacgctt ggcgaagaca aagtcgaggt ctctattgcg gctgaagaaa actggccgat
     7201 ttccgtcaaa cgcaacctga tggacgtatt gctcgtcaaa cccgaccaaa tgtccgtcgg
     7261 cgaactgacc acctacatcc gccacctcca aaacaacagc caaaacaccc gaatctacgc
     7321 catcgcatgg tggcgcaaat tggtttaccc cgccgcagcc tgggtgatgg cgctcgtcgc
     7381 ctttgccttt accccgcaaa ccacccgcca cggcaatatg ggcttaaaac tcttcggcgg
     7441 catctgtctc ggattgctgt tccaccttgc cggacggttc ttcgggttta ccagccaact
     7501 ctacggcatc ccgcccttcc tcgccggcgc actacctacc atagccttcg ccttgctcgc
     7561 tgtttggctg atacgcaaac aggaaaaacg ttgaaccaat gccgtctgcc ccccttcgga
     7621 cggcattggt ttttattatc atattcccgc agacagatag ccgttcccta ttatagtgga
     7681 ttaacaaaaa ccagtacggc gttgcctcgc cttgccgtac tatttgtact gtctgcggct
     7741 tcgtcgcctt gt
//
LOCUS       DAXIFS010000085         7699 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.085, whole genome shotgun sequence.
ACCESSION   DAXIFS010000085 DAXIFS010000000
VERSION     DAXIFS010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7699
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.085"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            232..1767
                     /locus_tag="ACFOCA_001254"
     CDS             232..1767
                     /locus_tag="ACFOCA_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6987974.1"
                     /translation="MSDSKTKERATFRTRRAFMIAAIGSAVGLGNIWRFPYIAFENGG
                     GAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVI
                     CIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAG
                     VWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWS
                     KLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAG
                     IGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAG
                     VTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFV
                     NTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFK
                     DTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQG
                     EEK"
     gene            1764..1856
                     /locus_tag="ACFOCA_001255"
     CDS             1764..1856
                     /locus_tag="ACFOCA_001255"
                     /inference="COORDINATES: protein motif:HMM:NF033493.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HFC6987975.1"
                     /translation="MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE"
     gene            complement(1916..3136)
                     /gene="lysA"
                     /locus_tag="ACFOCA_001256"
     CDS             complement(1916..3136)
                     /gene="lysA"
                     /locus_tag="ACFOCA_001256"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFC6987976.1"
                     /translation="MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAALN
                     PLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAE
                     IEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKA
                     NKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA
                     EGIVLEHLDLGGGVGIVYQDEDVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGS
                     LLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKDIEPLTANIVGPIC
                     ETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNVRNRAAEVLVDGGGYRLIRRR
                     ETLEQQMANELACL"
     gene            complement(3147..3317)
                     /locus_tag="ACFOCA_001257"
     CDS             complement(3147..3317)
                     /locus_tag="ACFOCA_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6987977.1"
                     /translation="MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQL
                     QSKPQSAPQTQK"
     gene            3388..3711
                     /gene="cyaY"
                     /locus_tag="ACFOCA_001258"
     CDS             3388..3711
                     /gene="cyaY"
                     /locus_tag="ACFOCA_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HFC6987978.1"
                     /translation="MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAEN
                     GTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDGRDFYDVLNEALSAASGEAV
                     EIEEL"
     gene            3742..4161
                     /locus_tag="ACFOCA_001259"
     CDS             3742..4161
                     /locus_tag="ACFOCA_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HFC6987979.1"
                     /translation="MAQLPLYRTAEIGNFTVGTPKVLESFSKHIPYGVVFEDDGDTGY
                     FYAASQDGILDALHIYNVEDVSDKHIPNHVLILWDDACTIAALCVNDYIHAVYDFVEQ
                     AGYCRNGFPEAGGEWVKVENRVLDDELLDKILSREPT"
     gene            4183..4689
                     /gene="luxS"
                     /locus_tag="ACFOCA_001260"
     CDS             4183..4689
                     /gene="luxS"
                     /locus_tag="ACFOCA_001260"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFC6987980.1"
                     /translation="MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPN
                     KEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVAD
                     AWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
                     LDEGLLNA"
     gene            4835..7627
                     /gene="polA"
                     /locus_tag="ACFOCA_001261"
     CDS             4835..7627
                     /gene="polA"
                     /locus_tag="ACFOCA_001261"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFC6987981.1"
                     /translation="MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNM
                     LRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTG
                     WPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLD
                     IEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAS
                     EIKGKVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFK
                     RWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEKQAEKATAPERLDYQA
                     VTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLT
                     AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYI
                     IESHLGHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALR
                     LEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE
                     QQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL
                     PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPI
                     RTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAA
                     EVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPG
                     VAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDL
                     IKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDV
                     PLVAEVGVGENWEEAH"
BASE COUNT         1777 a         2076 c         2092 g         1754 t
ORIGIN      
        1 ggattggtgt gggatttagg gctaatctag tacagcccct aaaatttttc gttttcaagc
       61 cttcaccgct tgccatcagc gttaaatttt tttacgataa gcacatagat tgtaaacaat
      121 cggccacaag ccggtttgtt ttttcagaag acattatccc tgtcagacgc tatttctata
      181 tatttcgcct ataatggctt gtttttaata aataattcaa gaggtatcaa cgtgtctgat
      241 tccaagacga aagaacgcgc cacattccgc acgcgccgcg cgtttatgat tgccgccatc
      301 gggtccgccg tcggcttggg caatatttgg cgtttcccct atattgcttt tgaaaacggc
      361 ggcggcgcgt tcatcctgcc ctatctggtc gcgcttctga cggcgggcat cccgctgctg
      421 ctgctcgatt atgccatcgg ccaccgttac cgtggttctg cgcccttggc tttccgccgc
      481 ctcggacgat ggtttgagcc ggtcggctgg tggaacgtga tgaccaatat cgtcatctgc
      541 atctattacg cggtaattat cggttgggcg gcaagctata cctattattc ggtcaacgcc
      601 gcctggggtg cggatccgca gggttttttc tttaaggact tcctgcaaat ggcgggcccg
      661 gaagccttgg gtttggattt tgtcggcaaa gtcgccggtc ctttggcggg cgtgtgggtt
      721 tttaccgccg ccattatggc gttgggcgtg caaaagggcg tggcgcgcgc ctcgtcgttc
      781 tttatgccgc tgcttttggt gatgtttttg attatggtcg gcatttcact aaccctgccg
      841 ggtgcggcaa agggcttgga cgcattgttt acgcccgact ggtcgaaact cgccgattcc
      901 aaggtctggg tggcggcata cgggcagatt ttcttttcgc tttccatctg cttcggcatt
      961 atggttacct attcttctta tttgaagaaa aaaaccgact tgggcggaac ggggctggtg
     1021 gtcggttttg ccaacagcag ctttgaactg ctcgcgggca tcggcgtgtt tgccgcattg
     1081 ggctttatgg cgcaggcggg cggcaaggcg gtcaacgagg ttgcctcagg cggcatcggt
     1141 ttggcgttta tcgcctttcc gaccattatc aaccaggcac cgatgggctg gctgatcggc
     1201 atattgtttt tcggttcgct ggtattcgcc ggcgttacgt cgatgatttc catccttgaa
     1261 gtgattgtgg cggcgattca ggacaagctg aacatcgggc gcgtcaacgc cacgctgctg
     1321 gtctgcattc cgatgggcat tgtttccacg ctgctgttcg gtacggcgac ggggctgccg
     1381 gttttggacg tgatggacaa attcgtcaac acctacggca ttgttgccgc cggctttgtt
     1441 tatgttgccg ccatcatcat tagcggcagg ctgccggaat tacgcaagca cctgaacgct
     1501 ttgtcctcca tccgcatcgg cggcttgtgg acggtctgcg tcgtggttac cgtcgtgatg
     1561 ctcggctata tgctgtttaa agataccagc ggcctgatgg agaaaaatta cgaaggttat
     1621 ccggatggtt tcctcagtat tttcggctgg gggatgtcgg cggcgttggt cgtgttcggg
     1681 ctgctgctgt cgttgctgcc ttggaaacac ggtcaggatt tcaacgtcaa agacgaacac
     1741 gaacatgaac aaggagaaga aaaatgagta cttccgccat tgtgatgatg attgtctcaa
     1801 tcgtgataat ctggggaggg ctgctgcttt ccctgttaag gctgccgaac gagtaagcct
     1861 ttagagcgtt aaaaatgccg tctgaactgt ttcagacggc attttgatgt tcggcttaca
     1921 ggcaggcgag ttcgtttgcc atttgctgtt ccaaggtttc gcgccggcgg atgagccggt
     1981 atccgccgcc gtcaaccaat acctccgccg cacggttgcg cacgttgtaa ttgctcgcca
     2041 tactggctcc gtatgcgccc gcgctacgga taagcagcaa atccccttct tcgcaggcga
     2101 tggtgcggtc tttgccgaga aagtcgccgg tttcgcaaat cggaccgacg atgttggcgg
     2161 tcagaggctc aatatctttg gtttcgaccg cctcgatgtg atgataggca tcataaagcg
     2221 ccgggcgcat caaatcgttc atcgccgcat cgaccatcac aaagtttttc tcttcgccgt
     2281 atttgacgaa ttcgacgcgt gtcagcagcg aacctgcgtt gccgaccaag ctgcggccgg
     2341 gctcaagaat gagtttcaga cggcgtgtgc cgatcagttt ttgaacggct tgggcatacg
     2401 cgcccaaatc aggcacatct tcgtcttggt aaacaatgcc gacgccgccg cccaagtcca
     2461 agtgttccaa cacaatgcct tcggcggcaa gcgcgtcaac caaaatcaaa atgcgctcgc
     2521 aggcttcgac cagcgggctt aagtcggtta gttgggagcc gatgtggcag tcgatgccga
     2581 tgattttcaa attgggctgt tgtgcggcgt ggcggtaggc ttcgagcgcg tcggcataag
     2641 caatgccgaa tttgttggct ttcagacctg tggagatgta gggatgggtt ttcgcatcga
     2701 catcgggatt gacgcgcagg gagacggacg cggttttgcc taaacgcgcg gcaacttttt
     2761 gaatacggtc gatttcggga atgctttcca tattgaagca tttcacgccg gcattcagcg
     2821 cgaactcgat ttctgcctcg cttttgccca cgcctgaaaa tatggttttt gccgcatcgc
     2881 cgcctgccgc caaaacgcgt gccaattcgc cgccggacac aatgtcgaaa ccgctgccca
     2941 gcgaggcgaa gtgtttgata atgctcagat tgccgtttgc cttgacggcg taacagacga
     3001 gcgggttcaa agcggcaaac gcggtttggt agtgttcaaa tgcttcggtc agcgcggatt
     3061 ggctgtacac ataaagcggt gtgccgaatg cttcggcaag gcgggggtaa gggacttgtt
     3121 cgcaaaatag ggtcatgttt tcgttttcat ttttgggttt gtggagcgga ttgcggtttg
     3181 ctttgaagct gcaaaccggt ttggattacg ccgaaacgcg ccttgtcgcc ttctttgggc
     3241 aggtagaggt cgcctttgta accgcaggcc gagagcagga gggcggttgc cgccgcaaaa
     3301 aatacgccgt atttcatcgg taaacttcct tcataagcgc gaatgtggca agattcggca
     3361 tcttaaacaa aaaacacgca aaaagctatg atgaccgaaa gcgagtttat ccgcgcgagc
     3421 gaagcattat ttgaacacat cgaagaccaa atcgacgaaa acggctggga tttcgactgc
     3481 cggtttgccg gaaacgtcct gaccatcgaa gccgaaaacg gcacgcaaat catcgtcaac
     3541 cgccacacgc ccaaccaaga attatggatt gccgccaaaa gcggtggcta ccatttcgcc
     3601 gaacaaaacg gcaaatggct ggcaacgcgc gacggacggg atttttacga cgttttaaac
     3661 gaagccctga gcgcggcttc gggcgaagcg gtagagattg aggaattgtg attcaatttg
     3721 atataaaaag attgttaccc aatggcacaa ttacctctat atcggactgc cgaaatcgga
     3781 aattttactg tcggcacgcc taaagtttta gaatcatttt ccaaacatat cccttatggt
     3841 gtcgtctttg aagacgacgg cgacacgggc tacttctatg ctgcttcgca agacgggatt
     3901 ttagatgcct tgcacatcta caatgtcgaa gatgtatccg acaaacatat ccccaatcat
     3961 gtcttgattt tatgggatga tgcctgcacc atagccgcat tgtgtgtcaa cgactacatt
     4021 catgccgtct atgattttgt cgaacaggca ggatattgcc gcaacggctt ccctgaagca
     4081 ggcggcgaat gggtgaaagt cgaaaaccgc gtcttggatg atgaattgct ggacaaaatc
     4141 ctatcccgag aacctacata accctcacaa aaggataccc aaatgcccct actagacagt
     4201 ttcaaagtcg atcacacccg tatgcatgcc cccgccgtac gcgtggcgaa aaccatgacc
     4261 acgcccaaag gcgacaccat taccgtgttc gacctgcgct tttgcattcc caacaaagaa
     4321 atcctgcctg aaaaaggcat acacacgctg gagcatttgt tcgcaggttt tatgcgcgac
     4381 cacttgaacg gcaacggcgt ggaaatcatc gacatttccc cgatgggctg ccgcaccggt
     4441 ttctacatga gccttatcgg cacgccttcc gaacagcagg tcgccgatgc atggctcgcc
     4501 tcgatgcagg atgtgggcaa tgtcaaagac caaagcaaaa tccccgagtt gaacgaatac
     4561 caatgcggca cttatcaaat gcactcgctc gccgaagcgc agcaaatcgc gcaaaacgtg
     4621 ttggcgcgca aagtggcggt gaacaaaaac gaagagctga cgctggatga agggctgctg
     4681 aacgcctaat ccgccaaaaa tgccgtctga acaagggttt cagacggcat ttgccttttc
     4741 cgttataatc cggggttgtg cggggtcggg ttttaagccg gcatcgtcct tccctatttt
     4801 tttctgtccc ttatcggttt taagcgggtt ttttatgtcc aacagaccta cactcctcct
     4861 cgttgacggc tcgtcctacc tctaccgtgc gtatcacgcg atggggcaaa acctgaccgc
     4921 ccccgacggc gcgccgacgg gtgcgctgta tggcgtattg aatatgttgc gccgtttgcg
     4981 gtcggaatat ccgcacgatt attgcgcggt ggtttttgat gcgaaaggca aaaatttccg
     5041 ccatcaaatg tttgaagaat acaaggcgac gcgcccgccg atgcccgacg atttgcgccc
     5101 gcaggcggaa gcactgccgg atttagtgcg cctgacaggc tggccggtat tggtgattgg
     5161 gcaggtggag gcggacgatg tgatcggcac gctggcgaaa cagggggcgg aacatggttt
     5221 gcgagtcatt gtttcgaccg gcgataagga catggcgcag ttggtggatg agcgcgttac
     5281 gctggtgaac acgatgagcg gagaaacgct ggatattgaa ggcgtgaagg caaaattcgg
     5341 cgtgcgcccc gaccaaatcc gcgattatct cgcgctgatg ggcgacaagg tggacaacgt
     5401 gccgggcgtg gaaaaatgtg gcccgaaaac ggcagtgaag tggctggaag cctacggctc
     5461 gttgcaaggc gtgatggaac acgcttcgga aatcaagggc aaagtgggcg agaatctgcg
     5521 tgccgccctg ccgcgcctgc cgctgtcgta tgatttggta acgattaaaa ccgatgtgga
     5581 cttgcacgcc gagctttcag acggcatcga aagcctgcgc cgtaccgcgc cgaaatgggc
     5641 gcaactggtt gtcgatttca aacgctgggg cttccgcacc tggctgaaag aagcggaatc
     5701 aaacatgaat accggctcga ccgatgatgt gttcggcagc gacagcatcg gtgagcaggc
     5761 ggctttgaat gcggaaatgc cgtctgaaaa acaagctgaa aaagccaccg cccccgaaag
     5821 gctggattat caagccgtta ccaccgaagc gcagtttgcc gctttgttgg acaaactgtc
     5881 gcgggcgaac acaatcggca tcgatacgga aaccacgtca ttagacgcga tgaacgcctc
     5941 gctggtcggc atcagcatcg ctttccaagc aggcgaagcg gtttacatcc ccgtaggaca
     6001 cagcctgacc gcagcgcctg aacagcttga tttacaagac gtattaggcc gtctgaaacc
     6061 gcatttggga aaccccgccc taaaaaaaat cgggcaaaac ctcaaatacg accaacacgt
     6121 tttcgccaac tacggcatcg ccctgaacgg cattgccggc gacgccatgc tcgcttccta
     6181 catcatcgag agccatctcg gacacggctt ggacgaattg tccgaacgct ggctcggctt
     6241 ggaaaccatt acctacgaat cgctgtgcgg caaaggcgcg aagcaaatcg gttttgccga
     6301 tgtcgccatc gggcaggcga ccgaatacgc cgcccaagac gccgatttcg ccctgcgcct
     6361 cgaagcgcac ctgcgcgcgc aaatggacga aaaacagctt gaaatgtatg aaaaaatgga
     6421 gctgcccgtc gcgcaggtat tgtttgaaat ggaacgcaac ggcgtgcaaa tcgaccgcgc
     6481 cgaactcgcc cgccaaagcg cggaactcgg cgccgagctg atgaagctcg aacaacaagc
     6541 ctatgccgcc gcagaccagc cgttcaacct caattcgccc aaacagctgc aagaaatcct
     6601 gttcgacaaa atgggcatcc ccaccaaagg cctgaaaaaa accgccaaag gcggcatttc
     6661 caccaacgaa gccgtgctcg aacagctcgc gcccgactac cccctgccta aaatcatcct
     6721 gcaaaaccgc agcctggcga agctcaaatc cacctacacc gacaaactac ccgaaatgat
     6781 ttcccccaag gacggccgcg tgcataccac ctacgcccaa gccgtcgcca ttaccggccg
     6841 cctcgccagc aacaacccca acctgcaaaa catccccatc cgcaccgccg aaggccgccg
     6901 cgtgcgccgc gcctttaccg caccgcaagg cagcgtcatc gtttccgccg actattccca
     6961 aatcgagctg cgcattatgg cgcacctctc cggcgacaaa accctgattg ccgcgttcca
     7021 aaacggcgaa gacgtacacc gccgcaccgc cgccgaagtg ttcggcactg cgcccgaaaa
     7081 cgtctcgtcc gagcaacgcc gctacgccaa aaccatcaac ttcggcttaa tttacggtat
     7141 ggggcaatac ggtttggcaa aatcattggg catcgacaac ctttccgcca aaaactttat
     7201 cgaccgctac ttcgcccgct accccggcgt cgccgaatac atgcagcgca ccaaagaaca
     7261 agccgccgcc caaggctacg tcgaaaccct gttcggcaga aggctctatt tgcccgacat
     7321 ccgcaacaaa aacgccaacg cccgcgcagg agccgagcgc gccgccatca atgcccccat
     7381 gcaaggcacc gcgtccgacc tcatcaaacg cgccatgata gacgtgcgaa actgtctttc
     7441 agacggcatc ggcagcaaac tggtcatgca ggtgcatgac gaactggtgc tggaagtcgt
     7501 tgaaaccgaa ctggattttg tcaaagaaaa actgccgcag attatggcga aagtggacgg
     7561 cggattattg gatgtaccgc tggtggctga ggttggcgta ggggagaatt gggaagaggc
     7621 acattgattg aaaggtgtta tatgctatct ttatttaaat aaaatttaat ttttggtata
     7681 ttttttctaa atgttccta
//
LOCUS       DAXIFS010000086         7589 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.086, whole genome shotgun sequence.
ACCESSION   DAXIFS010000086 DAXIFS010000000
VERSION     DAXIFS010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7589
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.086"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(211..3000)
                     /gene="ileS"
                     /locus_tag="ACFOCA_001262"
     CDS             complement(211..3000)
                     /gene="ileS"
                     /locus_tag="ACFOCA_001262"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFC6987982.1"
                     /translation="MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREI
                     AKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPI
                     EVMVEKLHGKDMPKARFRELCREYAAEQVACQKKDFIRLGVLGDWDKPYLTMDFKTEA
                     DTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKVSPAIDVGYPFKDTAA
                     LAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAE
                     DALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDIPMLNGDHVTTDAGTGLVHTAP
                     AHGLEDYAVCNKYGIELYNPVNAEGKYISETPRVAGMSVWEANPVILQWLEETGNLLA
                     SSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWG
                     RARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVAQRIEEKGIE
                     AWFSLDKGELLSAEDCEHYDKLSDTMDVWFDSGSTHYSVVKQREELDWPADLYLEGSD
                     QHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDQNGRKMSKSIGNVVAPQEVYNEFG
                     ADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIEDAVQQA
                     DMVEIDRYAVVLARQLQERLAGDYYPRYTFHFAVKDIVSFCSEDLGAFYLDILKDRLY
                     TTKADSRARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEF
                     PTINEKAEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYL
                     NALGEELRFALLVSKAEVKVGSELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKR
                     CAENVGREGETRHYA"
     gene            complement(3141..4061)
                     /gene="ribF"
                     /locus_tag="ACFOCA_001263"
     CDS             complement(3141..4061)
                     /gene="ribF"
                     /locus_tag="ACFOCA_001263"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFC6987983.1"
                     /translation="MRIRLGRHNAPDFPHGAAVTIGNFDGVHLGHKHILQKLRLEADT
                     RGLPVVTVVFEPQPKEFFALRTGRMPPCRISPLRTKLELLEGTGCVDAVWVLRFDQNF
                     SEISAQGFIDRLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVE
                     DIRTSSTAVRQALSDGNLAYAKKLLGHDYVLSGRVVHGRKLGRTLNAPTANIRLPRHR
                     YALGGVFVVEADGAFGTRRGVASFGFNPTVDSDCFQKLEVHLFDFQGDLYGQRLNVRF
                     LHKLRDEEKFDGMEELKRQIEADMEAAKCW"
     gene            complement(4588..5883)
                     /gene="tyrS"
                     /locus_tag="ACFOCA_001264"
     CDS             complement(4588..5883)
                     /gene="tyrS"
                     /locus_tag="ACFOCA_001264"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFC6987984.1"
                     /translation="MSVIQDLQSRGLIAQTTDIEALDALLNEQKISLYCGFDPTADSL
                     HIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVKSIR
                     SQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRD
                     GAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLYQKQVFG
                     LTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSI
                     EEIDAIEAKDKASGSKPEAQRILAEEMTRLIHGEEALAAAQRISESLFAEDQSSLTES
                     DFEQLALDGLPAFEVSDGINVVEALVKTGLASSNKEARGFVNSKAVLLNGKPAEANNP
                     NHAAERPDDACLLNGEHKRFGKYTILRRGKRNHALLVWK"
     gene            complement(5946..>7589)
                     /locus_tag="ACFOCA_001265"
     CDS             complement(5946..>7589)
                     /locus_tag="ACFOCA_001265"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6987985.1"
                     /translation="PAFFAVLAATLIGGFFLFTKDDFFLLWKSALTALGFASNLYFAR
                     GKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVARKSPRVQFGFLAALCALSLA
                     ASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRYRQQRNLAVGRCCAAAGALFSACILS
                     ACLFAYSKQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKFFQWKITVAAGLISYSLY
                     LWHWPILAFMRYIGPDNLPPYSTAAAIVLILLLSLISYHCIEKPFKKWKGSFAQSVLW
                     IYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNTGKQCLWGDTEKQPELLV
                     LGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASRVFQNWAACRAVYRYAEE
                     HLPLYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHKLSSEKQAVYLMADNLAS
                     SYNVQRAYILSSRIPGYRQTLRPDDESTLKANARIRELAAKYPNVYIIDAAAYIPANF
                     QIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH"
BASE COUNT         1673 a         1947 c         2168 g         1801 t
ORIGIN      
        1 atccaaaccc acgacgcggc gggaatctat cggaaatgac tgaaacctcg agattctaga
       61 ttcccacttc cgtgggaatg acggttcagt tgcattccga caacaccgca atcttgaaac
      121 ccctccgccg ttataaagac aaattgcggc acaaaaaatg ccgtctgaaa tgctgttcgg
      181 cggtttcaga cggcatttgc tcaaacttta tcaggcgtaa tggcgcgttt cgccttctct
      241 gccgacattc tctgcacagc gtttgcagac ggtttcatag cctgcaaccg cgcccacatc
      301 gcgggtgtag tgccagcagc gttcgcattt ttcaccatca ctggctttag cggcaacggc
      361 aagttcgctg cctactttca cttctgcttt agacaccagc aaggcaaagc gcaattcttc
      421 gcccaaagcg ttcaggtagc cggccatttc ttccggcgca gtgatttcgg cttcggcttg
      481 caaggacgaa ccgacggttt tgtcggcgcg caaaggctcg atggcggcgg ttaccgcttc
      541 gcgggcttcg cggattgccg tccatttttt caccagttcg gcttcggctt tttcgttgat
      601 ggtcgggaac tcgtgccagg tgtggaagag gacgctgtct tcttcgccgc cgccgatgat
      661 gtcccacgct tcttcgccgg taaagcacaa aatcggcgca atcaagagaa ccaaactgcg
      721 cgtgatgtgg tacagggcgg tttgcgcgct gcggcgggcg cggctgtcgg ctttggtggt
      781 gtagaggcgg tctttcagga tatcgaggta gaacgcgccc aagtcttccg agcagaaaga
      841 aacaatgtct tttacagcaa agtggaaggt atagcgcgga tagtaatcgc ctgccagacg
      901 ctcttgcagc tgacgtgcca ataccacggc gtagcggtcg atttccacca tgtctgcctg
      961 ttgcacggca tcttcaatag gattgaagtc gctgaggttg gcaaacagga agctcaaggt
     1021 gttgcggata cggcggtagc tttcggttac gcgcttgagg atttctttgg aaatcgccaa
     1081 ttcgccgctg taatcggtgg atgccgccca caggcgcagg atgtccgcgc cgaactcgtt
     1141 atacacttct tgcggcgcga cgacgttgcc gatggatttc gacattttgc gcccgttttg
     1201 atccaccacg aaaccatggg tcagcagctg tttgtacggc gcgcgaccca ttgatgaggc
     1261 gcagccggtc agcatggacg actgaaacca gccccggtgt tgatcgctgc cttcgaggta
     1321 caagtcagca ggccagtcca attcttcgcg ctgtttcaca acggaataat gggtcgaacc
     1381 ggagtcgaac catacgtcca tcgtgtcgga gagtttgtcg taatgttcgc aatcttccgc
     1441 gctcaacaat tcgcccttat cgagggagaa ccaagcctcg atgccttttt cttcgatgcg
     1501 ttgcgcgact ttttccaaaa gttcggcaga gttcggatgc agctcgcccg tttctttgtg
     1561 aacaaagaaa gtcatcggcg tgccccaata gcgttggcgc gaaaccaccc agtcggggcg
     1621 gccttcaatc atggcttcca aacgcgcacg accccatgat gggaaaaatt cagtgtcatc
     1681 aacggctttg atggctttat cgcgcagggt tttaccatcg gcacctgctt tatccatacc
     1741 gacaaaccat tggccggtcg cacggtaaat caacggcgtt ttgtgacgcc agcagtgcgc
     1801 gtagctgtgt tcgattttgc tgcttgccaa gaggttgccg gtttcttcca accattgcag
     1861 gataacggga ttggcctccc aaacgctcat gccggcaacg cgcggcgttt cactgatgta
     1921 tttgccttcg gcgttgacgg ggttgtaaag ctcgatgccg tatttattgc agacggcgta
     1981 gtcttccaaa ccatgagcag gcgcagtatg caccaaaccg gtaccggcgt cggtggtaac
     2041 gtggtcgccg ttgagcatgg gaatatcgcg ttcgaggaac ggatgattca tgtgcaggtt
     2101 ttccagcttg tcgccggtgg tttcggcaag aatagcaatg ccgtctgaaa aaccgtaacg
     2161 tttgagcgcg tcttctgcca aatctttcgc cagcaccaat ttgcctttgg gcgtatcgat
     2221 taattgatac accacgtccg caccggcaga cacggcttgg ctcgctggca gcgtccaagg
     2281 cgtggtcgtc cagatgacgg caaacgcttt gccctcgatg cctgccaaac cgaatgcagc
     2341 ggcaagcgca gcggtgtctt taaacggata gcccacgtca atcgcaggcg atactttgtc
     2401 tttgtattcc acttcggctt cggccaatga agagccgcag tccaagcaga actgaaccgg
     2461 tttcgcgccg cggtagagat agccggattt gtagatttcg ccgagcatac gcacggtatc
     2521 ggcttcggtt ttaaaatcca tggtcaggta gggcttgtcc cagtcgccca acacgcccag
     2581 acggatgaag tcttttttct ggcaggcaac ttgttcggcg gcatattcgc ggcacaattc
     2641 gcggaaacgc gctttgggca tgtctttgcc gtgcagcttt tctaccatca cttcgatagg
     2701 caaaccgtga cagtcccaac ccggcacata aggcgcgtca aaaccggctt gggttttgct
     2761 gcggataatg atgtctttga gaattttgtt gacggcgtga ccgatgtgga tgtcgccgtt
     2821 ggcatacggc gggccgtcgt gcaggatgaa cttcggacga cctttggcga tttcgcgcag
     2881 tttttggtag cgtttttgct cgtaccagct tttcagccat gcaggctcgc gcttggcaag
     2941 attgccgcgc atcggaaacg ggctttcgag caggtttacg gttttgctgt aatcggtcat
     3001 tttttaatct ctattgttac aatatttcgg ttcagacggc attgcgcctc aaacagtatt
     3061 tcacaacggg aaacccctat gccgtctgaa cagttaaaag gttgattgta gcccaatcgg
     3121 atggtttgta taaggttttt ctaccaacac tttgcggctt ccatatcggc ttcaatctgc
     3181 cttttcagtt cttccatacc gtcaaacttt tcctcatcgc gcagtttgtg caggaagcgg
     3241 acgttcaacc gttgtccgta caaatcgcct tgaaagtcga acaggtggac ttccagcttt
     3301 tgaaaacagt cgctatcaac ggtgggattg aagccgaagc tcgccacgcc gcgccgcgtg
     3361 ccgaacgcgc cgtccgcttc gacgacgaac acgccgccga gtgcataacg gtggcggggc
     3421 aggcggatgt tggcagtcgg ggcgtttaag gtgcgtccga gttttctgcc gtgcaccacc
     3481 ctgccgctca agacgtagtc gtgtcccaaa agttttttcg cataggcaag gttgccgtct
     3541 gaaagggctt gtcgcacggc ggtactgctg gtgcggatgt cttcgacgat gacggaaggc
     3601 gtacgctcgg tctgcatatc gggctgttgt gccaaaagtt caaaacagcc ttcccgcccc
     3661 gcaccgaaac ggaaatcgtc gccgacgagc aaataacgcg tattcaaggt ttgacgcagc
     3721 aggcggtcga taaacccttg cgcggatatt tcggaaaaat tttgatcgaa acgcaaaacc
     3781 cagacggcat cgacacagcc tgtgccttcc aataattcga gcttggtgcg cagggggctg
     3841 atccgacacg gtggcatcct gccggtgcgg agtgcgaaaa attctttggg ttggggttcg
     3901 aaaacgacgg tcacgacggg taatccgcgc gtatcggctt cgaggcggag tttttggagg
     3961 atgtgtttgt gtccgaggtg tacgccgtca aaattgccta tggttacggc ggccccgtgc
     4021 ggaaagtcgg gcgcgttgtg ccgccccagc ctgattctca ttgttatgtt cgggtatgtg
     4081 gtgaaacagg cggtcattgt aaacggtatt gcggtttata gacagtgtgc cgcccgttac
     4141 gcccgcccga cgcgggaaaa gtaggcaaat ttcccgcagc cgaacgcgcc aaacgcataa
     4201 agcgcgcagc aggcgcggtg ctatgtgttg aaacatcgcc ccaaacctga tgcaacatca
     4261 gtgaaaatcg ttctttttta accaggtaaa ccgagacaag caaccctccg ccgtcattcc
     4321 cgcgcaggcg ggaatccgga cctgtccgca cagaaactta tcggataaaa acagttgctc
     4381 aaaccccgag attctagatt cccactttcg tgggaatgac ggttcagttg cgttccgaca
     4441 acaccgtaat cttgaaactc gtcattcccg ctcaggcggg aatctagaac gtggaatcta
     4501 agaaaccgtt ttgcccgata agtttccgtg cggacaggtc cggattcccg cctgcgcggg
     4561 aatgacggca tttctgcggc aatcggatta tttccaaacc aaaagcgcgt ggttgcgttt
     4621 gccgcgccga aggatggtgt atttgccgaa acgtttgtgt tcgccgttca gcaggcaggc
     4681 atcgtcgggg cgttcggcgg cgtggttggg gttgttggct tcggcaggtt tgccgttgag
     4741 caaaaccgct ttgctgttca caaagccgcg cgcttcttta ttggaggatg ccaaaccggt
     4801 tttgaccaag gcttcgacga cattgatgcc gtctgaaact tcaaatgcag gcaggccgtc
     4861 gagggcgagc tgctcgaagt cgctttcggt caggctgctt tggtcttcgg caaacaggct
     4921 ttcggaaatg cgctgcgcgg cggcaagggc ttcttcgccg tgaatcaggc gggtcatttc
     4981 ttcggcgagg atgcgttgcg cttcgggctt gctgccgctg gctttatctt tcgcttcgat
     5041 agcgtcgatt tcttcgatgg acaggaaggt aaagtatttc aggaatttat acacatcggc
     5101 atcggcgact ttcagccaga attggtagaa ctgatagggc gaggtttttt tcgcgttcag
     5161 ccacaccgcg ccgccttcgg ttttgccgaa tttggtgccg tctgatttgg taaccaaagg
     5221 cagagtcagt ccgaacactt gtttttggta caggcggcgg gtcaggtcga taccggcagt
     5281 gatgttaccc cattggtcgg agccgccgat ttccaaaacc gcgccgtggc gtttgttcaa
     5341 ctcggcgaag tcgtaacctt gcagcaggga ataggcgaac tcggtgaagg aaatgcctgc
     5401 gccgtcgcgg tcgatgcgct gtttgacgga ttctttgttc agcatggcgt tgacggagaa
     5461 atgcttgccg atgtcgcgca ggaagtcgag gcagttcatt ttgccgaacc agtcggcgtt
     5521 gttcgccata atggcggcgt ttccgccttc aaagctcaag aaaggggtta attggctgcg
     5581 gatgcttttc acccagccgg caacggtttc ggcggaattc aagctgcgtt cggcggcttt
     5641 gaagctgggg tcgccgatca taccggtcgc accgcccacc agtgcaatcg gcgtatgccc
     5701 cgcctgttgg aagcggcgca atgccaatac gggcagcagg tgtccgatgt gcaggctgtc
     5761 ggcggtcggg tcgaagccgc aataaaggga aattttttgt tcgttcaaca aagcgtctaa
     5821 ggcttcgatg tcggtggttt gcgcgattag gccgcgcgat tgcaggtctt ggatgacgct
     5881 catcggtctc tttcaaaaaa aattagcggt tttgcaaacc gccgattgta acaaatttaa
     5941 gcgaatcaat ggttatggcg cgtatcgaga aaccgttgtt tttcggaaaa acgcttcgcc
     6001 aattccgtgc cgccgtaagg gttgatgtgg tctttgtccg agtaaaccgg caatccgccg
     6061 atttggaaat ttgcggggat ataggcggcg gcatcaataa tatagacgtt ggggtatttg
     6121 gctgccaatt ccctgatgcg tgcattggct ttcagagtgc tttcgtcgtc cgggcgcagg
     6181 gtttggcggt aacccggtat gcgtgaagac aagatatagg cgcgttgtac gttgtaagac
     6241 gaggcaaggt tgtccgccat caggtaaacg gcttgttttt cggatgagag tttgtgcagc
     6301 atacggtcga atttttggaa aaaaccggca tcgtaggcaa gggagcggct gttttcgggc
     6361 atttggctgc cccagcgcat cgccaaaacc acttttgaat acaggggcag gtgttcttcg
     6421 gcatagcggt aaacggcgcg gcaggcggcc cagttttgga acacacggga cgcgtagcct
     6481 tccacatagg cgcaagcgtc ggcggaaacc atagtggcgg accatttttc ttttttgccc
     6541 acggcatcga agaatgtttt gtaatggtcg gcgtgggagt cgcccaaaac cagcagctcc
     6601 ggctgttttt ccgtatcccc ccacaggcat tgtttgccgg tattgttgtg gcaggaggtg
     6661 ttggaacgcg tcagccccaa gcggtcgtat tgcgccataa acggcagcct catcgcgaaa
     6721 aacgagcccg cccccaaaat gagcataggc aaggcataaa tccataaaac ggattgtgcg
     6781 aacgaacctt tccatttttt aaacggcttt tcgatgcagt gataagaaat cagggaaagc
     6841 agcaatatca ggacgattgc tgccgctgtt gaataaggcg gcaggttgtc cgggccgata
     6901 tagcgcataa aggccaatat cggccaatgc cacagataaa gcgaatagga aatcaaaccg
     6961 gcggcaacag tgattttcca ttggaaaaat tttttaagcg ggtgttcgta atgattgaaa
     7021 taaatcagcg cggcaacagc cagacaggga atcaaagcgg cgggtcccgg gaaataggcg
     7081 gtttgtttcg aataggcaaa caggcaggcg gacagtatgc acgcggaaaa caatgcgccg
     7141 gcggcggcac agcatctgcc aacggcgaga ttccgctgtt gccggtaccg catccacacg
     7201 gcggtcagcg atccgaccag catttcgcag gcgcgcaggt ggggcaggta atatttatcg
     7261 aacgcggaag gcataaagga agcggcaagg cttaaggcgc acaatgcggc gaggaagccg
     7321 aactgtacgc gcgggctttt gcgggcgaca agcagcagca atatcggaaa gacaaagtaa
     7381 aattgttctt cgaccgacaa agaccaaatg tgcagcaagg gcttttcttc ctgcgcggga
     7441 tcgaaataat ccttccccct tgcaaaatac aggttggagg cgaaacccaa ggcggtcagc
     7501 gcggatttcc acaaaagaaa gaaatcatct ttggtgaata aaaagaagcc gcctatcagc
     7561 gttgccgcca atacggcgaa aaatgcggg
//
LOCUS       DAXIFS010000087         7458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.087, whole genome shotgun sequence.
ACCESSION   DAXIFS010000087 DAXIFS010000000
VERSION     DAXIFS010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.087"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            142..1086
                     /gene="tehA"
                     /locus_tag="ACFOCA_001266"
     CDS             142..1086
                     /gene="tehA"
                     /locus_tag="ACFOCA_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HFC6987986.1"
                     /translation="MSASKKFPIPLSYFSIALGLFALGLSWRYGASVGLLPALAAESL
                     LAAASVVWLLLVAAYLIKMFAYRNDFLSDLRDLVQCCFISAIPITAMLEGLALKPYQA
                     GAAAVLIYVGVAGQLAFSMYRAAGLWRGLHSLEATTPIIYLPTVATNFVSASSLAALG
                     HHDYAALFFGAGMFSWLSLEASILGRLRTAAPVGTAARGVVGIQLAPAFVGCGAYFAV
                     GGKVDGFALALIGYGCLQLLFLLRLTRWFWEGGFTMSFWGFSFGFAAMAGCGLHLAAS
                     GVLSGLGLTLATAGSAGVALLLVGTLHRIATGRFLVRG"
     gene            complement(1160..1843)
                     /locus_tag="ACFOCA_001267"
     CDS             complement(1160..1843)
                     /locus_tag="ACFOCA_001267"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HFC6987987.1"
                     /translation="MELVFIRHGQSEWNAKNLFTGWRDVKLSEQGLAEAAAAGKKLKE
                     NGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGQLQGLDKKQTAE
                     QYGDEQVRIWRRSYDTLPPLLDKDDEFSAHKDRRYAHLPADVVPDGENLKVTLERVLP
                     FWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDKDIMGLEIPTGQPLVYKLDDN
                     LKVLEKFYL"
     gene            2140..4443
                     /gene="parC"
                     /locus_tag="ACFOCA_001268"
     CDS             2140..4443
                     /gene="parC"
                     /locus_tag="ACFOCA_001268"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HFC6987988.1"
                     /translation="MNMQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDG
                     QKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTL
                     RYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEP
                     LHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPA
                     PDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSSK
                     ILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSR
                     IDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLK
                     FRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAVFRLTEIQAEDILEIR
                     LRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEIQADMKQYGDARRTL
                     VEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTV
                     LPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSS
                     SGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDCKIIAATNQNR
                     ALAFPIGELKIMAKGKGLQIIGLNTGESMTHTAVSSEAEILIESEGRRGAAHKDRIPV
                     SLLEAKRGKKGRLLPISGSLKQLSSPK"
     gene            4464..6040
                     /locus_tag="ACFOCA_001269"
                     /pseudo
     CDS             4464..6040
                     /locus_tag="ACFOCA_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237220.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
     gene            6033..6500
                     /locus_tag="ACFOCA_001270"
     CDS             6033..6500
                     /locus_tag="ACFOCA_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HFC6987989.1"
                     /translation="MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNK
                     LDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPVAVITAFGNVDQAQEALRCGAFD
                     PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRYRMERLNIG"
     gene            6604..7356
                     /locus_tag="ACFOCA_001271"
     CDS             6604..7356
                     /locus_tag="ACFOCA_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6987990.1"
                     /translation="MTDILIDNTATETVRTLIQAFPLVPVSQPPEQGSYLLAEHDTVS
                     LRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLA
                     SLGLAVTAFEQHPAVACLLSDGIRRALLNPETQDTAARITLHFGNAAVQMPALVQTQG
                     KPDIVYLDPMYPERRKSAAVKKEMTYFHRLVGEAQDEAALLHTARQTAKKRVVVKRPR
                     LGEHLAGQAPAYQYTGKSTRFDVYLPYGTDKG"
BASE COUNT         1696 a         2233 c         1934 g         1595 t
ORIGIN      
        1 aatagtacga aaccgattca cttggtgctt cagcacctta gagaatcgtt ctctttgagc
       61 taaggcgagg caacgtcgta ctggtttttg ttaattcact atatctgtgc gttacgacgg
      121 catgccgtct gaagggtgtt tatgtctgca tctaagaaat ttccgattcc tttgagctat
      181 ttcagcatcg cgctgggctt gtttgccttg gggctgtcgt ggcgttacgg cgcgtctgtc
      241 gggctgctcc ccgccttggc cgccgaatcg ctgcttgcgg cggcttcggt tgtctggctc
      301 ttgctggtgg cggcatacct gatcaaaatg tttgcgtacc gaaacgattt tttgtctgat
      361 ttgcgcgact tggtgcaatg ctgcttcatc agcgcgattc cgattaccgc tatgctggag
      421 ggactcgcgc tgaagcccta tcaggcaggc gcggcggcag tcctgattta tgtcggcgtt
      481 gccggacagt tggcgttttc gatgtatcgg gcggccggtc tgtggcgcgg cctgcattcc
      541 ttggaggcga cgacgccgat tatttatctg cctacggttg cgacaaactt tgtcagcgcg
      601 tcatctctgg cggcgttggg gcatcatgat tatgcagctt tgtttttcgg cgcgggtatg
      661 ttttcctggc tgagcttgga agcctccatc ttgggcaggc tgcgcacggc ggcaccggtc
      721 ggcacggcgg cgcgtggcgt ggtcggcatc cagcttgcgc ccgcctttgt cggctgcggc
      781 gcgtattttg ccgtcggcgg taaagtcgac ggttttgcgt tggcattaat cggctacggc
      841 tgcctgcagc ttttgttctt gctacgcctg acccgctggt tttgggaagg tggttttacg
      901 atgagctttt ggggattttc attcggtttc gcggcaatgg caggatgcgg tctgcatctg
      961 gcggcttctg gcgtattgtc gggcttgggg ctgacgcttg ccaccgccgg atcggcaggc
     1021 gtggcgctgc tgcttgtcgg tacgctgcac cggatagcga cggggcgttt cttggtacgc
     1081 ggctgatgcg ttttgccgcc ttgtcaaaaa tgccgtctga acgctcaagc cttcagacgg
     1141 cattttttat ttcacaccct tacaggtaga atttttcgag gactttcaaa ttgtcgtcca
     1201 atttgtacac caacggctga ccggtcggga tttccaagcc catgatgtct ttgtcggaaa
     1261 tgccctcgat gtgttttgcc agcgcgcgca gggagttgcc gtgcgccgcc accaagacgc
     1321 gtttgccgct caaaatcgcg ggggcgattt ggtcttccca aaacggcaat acgcgctcca
     1381 gcgttacttt caggttttcg ccgtcgggta cgacatcggc aggcagatgg gcatagcggc
     1441 ggtctttgtg tgcggaaaac tcatcgtctt tgtccaaaag cggcggcagg gtgtcgtagc
     1501 tgcgccgcca gatgcggact tgctcgtcgc cgtattgttc ggcggtttgt tttttgtcca
     1561 ggccttgcag ttggccgtag tggcgttcgt tcagccgcca tgttttgatt tgcggtacga
     1621 acagttggtc ggattcttcc aaaacgatgt tgcaggtctt aatcgcgcgg gtcaggacgg
     1681 atgtgaaggc gatgtcgaac tcatagccgt tttctttcag ttttttaccg gcggcggcag
     1741 cctcggcaag cccctgctcg ctcagcttca cgtcgcgcca gcctgtaaac aggtttttcg
     1801 cgttccattc gctttgtccg tggcggataa ataccagttc catatcgtct ccaatgtgtg
     1861 aaagtgggaa agccttattt ataacatatt ttcacatttc ccgtatttga ttcagattca
     1921 gacacgcgcc cactatggtt tgccgttttg atttacaata atgtcctttg ttttacattc
     1981 cgcatacaca atgtttcaac acacaggacg acacataaag caccgcccta tgtgttgccc
     2041 tgatttggaa ggggttgccc cctcccaaat aaagtctgat tctaccgccc cgaaggacag
     2101 atgtccaagt ggcggggttt caaccgaaaa ggaaatacga taaatatgca accgcacgct
     2161 ccacataccg attccaatac gctgatgctc ggccgatacg ccgaacgcgc ctatctcgaa
     2221 tacgccatga gcgtggtcaa aggccgcgcg ctgcctgaag tttcagacgg ccaaaagccc
     2281 gttcagcggc gcattttgtt tgcgatgcgc gatatgggtt tgacggcggg ggcgaagccg
     2341 gtgaaatcgg cacgcgtggt cggtgagatt ttgggtaaat accatccgca cggcgacagt
     2401 tccgcctatg aggcgatggt gcggatggcg caggatttta ccttgcgcta tcccttaatc
     2461 gacggcatcg gcaacttcgg ttcgcgcgac ggcgacggtg cggcggcgat gcgttacacc
     2521 gaagcgcggc tcacgccgat tgcggaattg ctgttgtccg aaatcaatca gggaacggtg
     2581 gatttcgtgc cgaactacga cggcgcgttt gacgagccgc tgcacctgcc cgcccgcctg
     2641 cctatggtct tgctcaacgg cgcgtcaggc atcgcggtgg gcatggcgac cgagattccg
     2701 tcgcacaatt tgaacgaagt gacgcaggcg gcgattgcgc tgttgaaaaa gccgacgctg
     2761 gaaaccgccg acctgatgca atatattcct gcgcccgatt ttgccggcgg cggtcaaatc
     2821 atcacgccgg cggacgaatt gcgccggatt tatgaaaccg gcaagggcag cgtgcgcgtg
     2881 cgtgcgcgtt atgaaatcga aaaattggcg cgcggacaat ggcgcgtcat cgtaaccgag
     2941 ctaccgccga acgccaattc ctccaaaatc cttgccgaaa tcgaagagca gaccaacccg
     3001 aaaccgaaag caggcaagaa gcagctcaac caagaccagc tcaataccaa aaagctgatg
     3061 ctggatttaa tcgaccgcgt gcgcgacgag tccgacggcg aacatcccgt acgactggtg
     3121 ttcgaaccga aatccagccg catcgatacc gataccttca tcaacacgct gatggcgcaa
     3181 acttcgctgg aaggcaatgt gtccatgaac ttggtgatga tgggtttgga caaccgcccc
     3241 gcgcagaaaa acctgaaaac gattttgcag gaatggctgg atttccgcgt cgttaccgta
     3301 acacgccgtc tgaaattccg tttgaaccaa gtggaaaaac ggttgcacat cctcgaaggc
     3361 cgtctgaaag tctttctgca catcgacgaa gtgattaaag tcatccgcga atcagacgac
     3421 ccgaaaaccg atttgatggc ggtgttcagg ctgaccgaaa tccaagccga agacattttg
     3481 gaaatccgcc tgcgccagtt ggcgcgtttg gaaggtttca aactcgaaaa agaattgaac
     3541 gaattgcgcg aggaacaagg ccgtctgaac atccttttgg gcgacgaaaa cgaaaaacgc
     3601 aagctgatta tcaaagaaat acaggcggat atgaaacaat acggcgacgc gcgacgcacg
     3661 ctggtggaag aagccggacg cgccgtgttg acgcagacca ctgccgacga acccatcacg
     3721 ctgattctgt cggaaaaagg ctggatacgc agccgcgccg gacacaacct tgatttgagc
     3781 caaaccacgt tcaaagaagg tgaccgcctc aaacaaaccc ttgaaggccg caccgtttta
     3841 cctgtcgtca tcttggattc atcgggcaga acctacacgc tcgatgccgc cgaaatcccc
     3901 ggcgggcgcg gcgacggcgt accggtttca tccttaatcg agctgcaaaa cggcgcgaaa
     3961 cccgttgcga tgttgacagg attgccggaa caacattatt tattatcaag cagcggcggc
     4021 tacggcttca tcgccaaact gggcgatatg gtcgggcgcg tgaaagcggg caaagtagtg
     4081 atgactgtgg atagcggcga aaccgtcctg ccgccggttg ccgtctatgc ttcttcgctg
     4141 atcaaccccg actgcaaaat cattgccgcc accaatcaaa accgcgccct cgccttcccc
     4201 atcggcgaat tgaaaattat ggcgaaaggc aaaggactgc aaatcatcgg attaaacacc
     4261 ggtgaatcga tgacgcatac cgccgtttct tccgaggcag aaatcctgat tgaaagcgaa
     4321 ggcaggcgcg gcgcagcgca caaagaccgc atccccgtct ccctgcttga ggcaaaacgc
     4381 ggcaaaaaag gcagactatt acccatatcg ggcagcctga aacagctttc ttcccccaaa
     4441 taaacccgat tccacacata attatggtga tttccaaccc ccgcgaactt gaaaaactca
     4501 aagaccggat tcccaatctg atcaacatcg cccgcatcgc catcgtcctc cccctgctga
     4561 ttatgcatat cttcgggttg gaggtcagcg ggcatgaaaa cctgtacgcc tcatggacga
     4621 catgggcatt ttacttgtgg ctcgccattt cctgctggat gattttcttt tccatcatcc
     4681 atccgcattg gcaatggcag tcgctgaaaa tgccgcgttt cagcgcggtg gcggacatca
     4741 cgatgatcgg cgtgctgacc tacctgttcg gcggcatcga ctcggggttc ggcatcctga
     4801 tcctgccctt cgtgggcagc tcctgcctgc tcagttacgg gcgttacccc ctgctctatg
     4861 ccagctacgc cgccatcctg ctgatattca acgccattgc cgacggcgat atcggcaaat
     4921 atccgcacat atcggatgcc cgaaccgcct cggcaacctt catcctcgtc gccgcctcct
     4981 atctttccgc catcttcacc tcactgtcgg tcaaatacat cgacagcgcc ggccaactgg
     5041 cccgcgacaa ccacctcgcc taccggcgca tcaaaggctt gagccaaacc gtactcgaac
     5101 gcgttcaaga agccgtcgtc gtcatcaacg tcgagcatca gaccatactg ttcaataaaa
     5161 aggcaaaaga cctgctaccc atgcttgaaa tcggacagca tactgtcctg ttcgacccta
     5221 ttaccgtttt atgggacaag gcctcttcgc gtactttcga acgcaatatc gacacgcccg
     5281 ccctgaccgc ccgcatccgc gccgtgccga tgaacaaaga gcagaacaag ctgctcatcc
     5341 tctacatccg cccgcaaagc gaaattcagg cagaagccct gtccgtcaaa cttgccgcac
     5401 tcggacaact gaccgccaac ctcgcccacg aaatccgcaa cccgatgtcc gccatccgcc
     5461 atgcaaacga cctgttgcgc gaaaatatgg aagcgggggc ggcagatccg ttcaacgcca
     5521 aattgtgcaa aatcatcgac ggcaacgtct gccgtatcga caaaatgctc gaagacattt
     5581 cctcgctcaa caagcgcaac aaaaccgaac gcgaaaccat cggcctgata ccgttttggg
     5641 cggaattcaa acaagagttc ctgctcggcc atcccgatgc cgccggctgc atccgtccgg
     5701 acattcaggg cggcagcctg accgcctatt tcgatcccgc ccacctgcgg caaattatgt
     5761 ggaacctcgc caacaacgcg tggcggcaca gccgcaaaca gcccggctcg atttccgtca
     5821 ccatccgccc cgcgcaaaaa aacaccgtct gcatcctctt tgccgaccgc ccgaagtgca
     5881 ggaacacctg ttcgaaccct tttacaccac ggcggaaaac ggcaccggcc tcgggctgta
     5941 tgtcgcccgc gaactggcac acgccaactt cggcgatttg acctacctgc cggaagccaa
     6001 atgtttcaaa ctcacattac cggaaaaaag caatgactga actgcaacat cccgtcctcg
     6061 tcgttgatga cgaaaccgat attctcgacc tgatggaaat gaccctgatg aaaatgggct
     6121 tgcgcgtcca taccgcgtca ggcgttgccg aagcaaaaaa caagctcgac agccaacgct
     6181 attcgctcgt cctgaccgat atgcgtatgc cggacggctc ggggctagaa gtcgtccaac
     6241 acatcaacag ccgcctgctc gatacgccgg ttgctgtcat caccgccttc ggcaatgtcg
     6301 atcaggcaca ggaagccctg cgttgcggcg cgttcgaccc cgataccatg cagatacagg
     6361 actatctcga ccaaatcgaa cgcgacatca tcgaacaaac cctcaaacaa accgaaggca
     6421 accgcacgca ggccgccaaa cgcttgggca tcagcttccg ttcgatgcgc taccgtatgg
     6481 aacgcctcaa catcggctga cgacaaaacg gcatccgcac catctccgcc cacccgaaaa
     6541 aatgccgtct gaaacggcac ggcaaagcgg gttcgcccca cgcccgaacg gacacaaaac
     6601 accatgaccg acatcctcat tgacaacacc gccaccgaaa ccgtccgcac cctgatacag
     6661 gcattccccc ttgtgcccgt ttcccaaccg cccgaacaag gcagttacct ccttgctgaa
     6721 cacgataccg tcagcctcag gcttgtcggg gaaaaaagca gcgtcatcgt cgattttgcc
     6781 tccggcgcgg cacaataccg gcgcacaaaa ggcgggggcg aactcatcgc caaagccgtc
     6841 aaccacaccg cgcaccccac cgtttgggac gcaaccgcag gattggggcg cgacagcttc
     6901 gtcctcgcct cgctcgggct ggccgttacc gccttcgagc aacatcccgc cgtcgcctgc
     6961 ctgctttcag acggcatccg ccgcgccctc ctcaatcccg aaacgcaaga caccgccgcg
     7021 cgcatcaccc tgcatttcgg caacgccgca gtacaaatgc ccgcacttgt tcaaacacaa
     7081 ggcaaacccg acatcgtcta tctcgacccc atgtatcccg aacgccgcaa aagtgccgcc
     7141 gttaaaaaag aaatgaccta cttccaccgg ctcgtcggcg aagcgcaaga tgaagcggca
     7201 ctcctgcata ccgcacgcca aacagcaaaa aaacgcgtcg tcgtcaaacg cccccgcctc
     7261 ggcgaacacc ttgccggaca agcccctgcc taccaataca ccggcaaaag cacccgcttc
     7321 gacgtttacc tgccctacgg gacggacaag ggataacgcc cataaaacaa gacaccgaaa
     7381 aatttgccgt tcttatgcaa acgagaaacc ggtttttgcg tttcgactgt tttggataaa
     7441 tcatcacacc ttaaagtt
//
LOCUS       DAXIFS010000088         7299 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.088, whole genome shotgun sequence.
ACCESSION   DAXIFS010000088 DAXIFS010000000
VERSION     DAXIFS010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7299
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.088"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(280..1198)
                     /locus_tag="ACFOCA_001272"
                     /pseudo
     CDS             complement(280..1198)
                     /locus_tag="ACFOCA_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240797.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            1371..2171
                     /locus_tag="ACFOCA_001273"
     CDS             1371..2171
                     /locus_tag="ACFOCA_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6987991.1"
                     /translation="MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSG
                     KTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFD
                     NIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALD
                     PEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSVMVTHDIEKSLEIVDQVIFLAH
                     GEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG"
     gene            2220..2996
                     /gene="mlaE"
                     /locus_tag="ACFOCA_001274"
     CDS             2220..2996
                     /gene="mlaE"
                     /locus_tag="ACFOCA_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HFC6987992.1"
                     /translation="MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVR
                     QVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLA
                     AILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIF
                     NVAGIFGAYLVGVTWLGLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQ
                     GFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD"
     gene            3047..3541
                     /gene="mlaD"
                     /locus_tag="ACFOCA_001275"
     CDS             3047..3541
                     /gene="mlaD"
                     /locus_tag="ACFOCA_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HFC6987993.1"
                     /translation="MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVY
                     ADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQIL
                     TSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
                     KAAE"
     gene            3578..4168
                     /locus_tag="ACFOCA_001276"
     CDS             3578..4168
                     /locus_tag="ACFOCA_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HFC6987994.1"
                     /translation="MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKS
                     GDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
                     MLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAI
                     EGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK"
     gene            4225..4503
                     /locus_tag="ACFOCA_001277"
     CDS             4225..4503
                     /locus_tag="ACFOCA_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HFC6987995.1"
                     /translation="MHTELNNGTLHISGDITVKTLTGEAFERFQQQCRLKETIAVDFG
                     GVKRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS"
     gene            4500..5327
                     /locus_tag="ACFOCA_001278"
     CDS             4500..5327
                     /locus_tag="ACFOCA_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFC6987996.1"
                     /translation="MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQAD
                     RYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGIN
                     TTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGIT
                     SVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRA
                     RQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP"
     gene            5452..5814
                     /locus_tag="ACFOCA_001279"
     CDS             5452..5814
                     /locus_tag="ACFOCA_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ"
                     /protein_id="HFC6987997.1"
                     /translation="MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSY
                     LVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVIT
                     DLEHEPLAREAFQPINLN"
     gene            5814..6197
                     /locus_tag="ACFOCA_001280"
     CDS             5814..6197
                     /locus_tag="ACFOCA_001280"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6987998.1"
                     /translation="MKLTVRNYHLDGYGHVNNARYLEFFEEARWAFFEERGLLHELAG
                     LILIVARIDIRYSRPAVEGDVLQFSCRLKTPGTRRIVLTQTITLPNGKTAAEADITLM
                     PVHAATQRTVSLPATLARALEALSE"
     gene            6194..6682
                     /locus_tag="ACFOCA_001281"
     CDS             6194..6682
                     /locus_tag="ACFOCA_001281"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin family protein"
                     /protein_id="HFC6987999.1"
                     /translation="MKKILTAAVVALIGILLAIVLIPDSKTAPAFSLPDLHGKTVSNA
                     DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVK
                     DYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAL
                     AQ"
     gene            complement(6765..6893)
                     /locus_tag="ACFOCA_001282"
     CDS             complement(6765..6893)
                     /locus_tag="ACFOCA_001282"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HFC6988000.1"
                     /translation="MAGVTVGRGSVVGAGAVVTKDIPPYSLAAGNPAVVKKNLPEG"
     gene            complement(6899..7279)
                     /locus_tag="ACFOCA_001283"
     CDS             complement(6899..7279)
                     /locus_tag="ACFOCA_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-o"
                     /protein_id="HFC6988001.1"
                     /translation="MGSKFFFLLLRFAGSGLPPSHMRGIGIVGRRVRGFLARRVSPHI
                     GRGVNIERGAYVFPDTVLGDGSGIGANCEICRGLVVGKNVMMEPECLFYSNNHKFDRS
                     KNALRATRKSVRLRWRTMSGRGTG"
BASE COUNT         1687 a         2114 c         1846 g         1652 t
ORIGIN      
        1 accatttatt tcaatcaata ctgcctcttc aatggtgtta tctaactttt tgattttaca
       61 tttatataac atttatcttg cctttggata aattgttttg ttttttggat tgttattcaa
      121 agttctctaa aagtcttttc ctgattttgt atgtatcgtg gtaatactac cattttcatt
      181 ggttccaaca aaaataaatt tagattgacc tttggaatca gtacccaaaa actgaacata
      241 tccagacatg cggatttcgg gttttaaatc aaatgcggct tatcggtttt cttttttggt
      301 ttccgccggc gtgctgccga aatattgcct gaatgcctga gtaaagctgg aaacgtggcg
      361 gtagccgcat aaaatatgcg gtttcgccta tgcttttgcc cccgttttgc aacaggtaga
      421 gcgcgtgctg catttgtttg tggtgcagcc actcgcttgc ggtaataccg aaatggtcgc
      481 gcatacggcg ttgcagcgtc ctttcactga tgttcagcgc gtctgtcagc cggttgactt
      541 ggtgtgcgcc gtcggcaaac gcggcattta gggtgcggct gaagtcttca gacggcatag
      601 cgtctgcttc cgccgtttgc cccgccgccg gcccgatgcc gtctgaaacc gtgtcccaca
      661 agtccgacag cagccgcaac acgtccgcct cgcggcgcaa tgtttcgccc aaatgcccct
      721 ttgggacggc tttcaggcag gatgccgcca agccgcgcag gttcgggggc aaatcccata
      781 tcctgaccgg ttcgcggtaa agcaggggtg cgaaacgcgc gtattccgga cgcagcagcc
      841 attgttccat acctttaatg gtcattttga ccgttttgcc gcctcggtaa agatagcggc
      901 tgaacaggac ttcttccccg acagcaatta ggacaatctt gccgccgtcc gcatcgattt
      961 ggaagcggca gcggttgatg ccgaagtcca aactgccttc cagcaagagc acgaacgaca
     1021 cataaggttc ggcgaggcgg ctgctgcaaa aatcacaccg tgccgttact gtgccgccgt
     1081 ggatggaaat gccgttggac aaagtatcga aacggtagct gccctccaca tagctgccgc
     1141 cgccgctttt gactagattg acgaaccggc tgctgttcaa atgttctgct ttttccatag
     1201 ttttctgata aaggttatca tttgaaagat aacatttttc gccacagcaa acaatccgcc
     1261 gccgacaacg gcattttcac aacatttacc gtccgtatgc cgtctgaaaa ttgcccgtct
     1321 tcccgataag ccttaaaata cacgccgtca aacctaccgt ccgtccgtac atgagcccat
     1381 ccccctttat cgaaatgaaa gacgtcgcct tcgcgtatgg cgaccgcccg attctgaaga
     1441 acatcaattt cagcattccg caaggcaatt ttgctgccgt aatgggcggt tcgggcagcg
     1501 gcaaaaccac gctgatgcga ctgattacag gacagattcg tccgcagtcc gggcaggttt
     1561 tgattgaagg acgggatttg gcgggctttt cggctgacga gttgtatgaa caccgccgcc
     1621 gtatgggcgt attattccaa cacggcgcgc tgtttaccga tttgtcggta ttcgacaata
     1681 tcgcttttcc gatgcgcgaa ctgacgcgcc tgccggaagc ggtgattcga gatttggttt
     1741 tgttgaaact gaacgcggtc ggtttgcgcg gcgtggaaaa cctgatgccg tccgagttgt
     1801 ccggcgggat gtcgcgccgc gtcgcgcttg cccgcacgat tgcgctcgac cctgaaatta
     1861 tgttgtacga cgaaccgttt accggcctcg atccgatttc cttgggcgtg attgcccact
     1921 tgatcagccg cgtcaataag gctttgcgtt cgaccagcgt tatggtaacg cacgacattg
     1981 aaaaatcttt ggaaatcgtc gatcaggtga ttttcttggc gcacggcgaa attatgttct
     2041 ccggctcgcc gcaggaaatg cgcgaactgg attcgccttg ggtgcgccag tttgtcggcg
     2101 ggctggcaga cggccccgta gcataccgtt atccggcgca aacgtcgttg cagcaggatt
     2161 tgctcgggta aattgagccg gtgccgtctg aaaccgttga accttacata tagaaattta
     2221 tgaactttat ccgttccgtc ggggcgaaaa ccctcggcct tattcaatcc ctcggcagta
     2281 tcacgctgtt tctgctgaac attctggcga agtccggtac ggctttcgtc cgtccgcgcc
     2341 tgagcgtgcg ccaagtgtat ttcgccggcg tgctgtcggt gctgattgtt gccgtttcgg
     2401 ggctgttcgt cggtatggtt ttgggtttgc agggctatac gcagttgtcg aaattcaaat
     2461 ccgccgatat tttgggctat atggttgcgg cttcgctgtt gcgcgaactg ggtccggtat
     2521 tggcggcgat tctgtttgcc agcagcgcgg gcggtgcgat gaccagcgaa atcggtctga
     2581 tgaaaacgac tgaacagctc gaagcgatga atgtgatggc ggtaaacccc gtcgcccgcg
     2641 tggttgcgcc gcgcttttgg gcgggcgtgt tttccatgcc gcttttggct tcgattttca
     2701 acgtggcggg tattttcggc gcgtatttgg tcggtgtaac ctggctgggc ttggacagcg
     2761 gcattttctg gtcgcaaatg cagaacaaca tcacgataca ttacgatgta atcaacggtc
     2821 tgatcaaatc cgccgcgttc ggcgtggcgg taacgctgat tgccgtgcat cagggcttcc
     2881 actgcgtccc gacctcggaa ggcattttgc gcgccagcac gcgcacggtg gtttcgtccg
     2941 ccctgacgat tttggcggtc gattttatat tgaccgcgtg gatgtttaca gattgacagg
     3001 gcgtctgaag acgaaacgcg gaacatcgga tattcaagga actttaatga aaaagaacat
     3061 attggaattt tgggtcggac tgttcgtcct gattggcgcg gcggcggtcg gctttctcgc
     3121 tttccgcgtg gcgggcggtg cggcgttcgg cggttcggac aaaacttacg ccgtttatgc
     3181 cgatttcggc gacatcggcg gtttgaaggt caatgccccc gtcaaatccg caggcgtatt
     3241 ggtcgggcgc gtcggcgcta tcggacttga cccgaaatcc tatcaggcga gggtgcgcct
     3301 cgatttggac ggcaagtatc agttcagcag cgacgtttcc gcgcaaatcc tgacttcggg
     3361 acttttgggc gagcagtaca tcgggctgca gcagggcggc gacacggaaa accttgctgc
     3421 cggcgacacc atctccgtaa ccagttctgc aatggttctg gaaaacctta tcggcaaatt
     3481 catgacgagt tttgccgaga aaaatgccga cggcggcaat gcggaaaaag ccgccgaata
     3541 aacgtatgcc atcatattca aactaggaca cttaatcatg aaaaaatcct ccctcatcag
     3601 cgcattgggc atcggtattt tgagcatcgg catggcattt gccgcccctg ccgacgcggt
     3661 aaaccaaatc cgtcaaaacg ccactcaagt attgagcatc ttaaaaagcg gtgatgccaa
     3721 caccgcccgc caaaaagccg aagcctatgc gattccctat ttcgatttcc aacgtatgac
     3781 cgcattggcg gtcggcaacc cttggcgcac cgcgtccgac gcgcaaaaac aagcgttggc
     3841 caaagaattt caaaccctgc tgatccgcac ctattccggc acgatgctga aattaaaaaa
     3901 cgccaacgtc aacgtcaaag acaatcccat cgtcaataaa ggcggcaaag aaatcatcgt
     3961 ccgcgccgaa gtcggcgtac ctgggcaaaa acccgtcaac atggacttca ccacctacca
     4021 aagcggcggt aaataccgta cctacaacgt cgccatcgaa ggcgcgagcc tggttaccgt
     4081 gtaccgcaac caattcggcg aaattatcaa agcgaaaggc gtggacggac tgattgccga
     4141 gttgaaggct aaaaacggca gcaagtaatc cataagccat gccgccagac tgaagatggc
     4201 atggattttt tcctaccgaa cactatgcat acagaactca acaacggaac actgcacatc
     4261 agcggcgaca tcaccgtcaa aaccctgacc ggggaggctt ttgagcgttt ccagcagcaa
     4321 tgccgtctga aagaaaccat tgccgtcgat ttcggcggtg tcaaacgtgc cgattccgcc
     4381 tgcgtgtcgc tgctgctcga agtgctgcgc ggctgcaaag gcagcgtcag gctgaccggc
     4441 attcccgaat ccgtgcgcgc gctgtccgaa ctgtacgaaa tcaaagactg gctgaaatca
     4501 tgaaaaaaac cgcctatgcc ttcctcctgc tgatcgggtt cgcttccgcc cctgcatttg
     4561 ccgaaacccg ccccgccgac ccttatgaag gctacaaccg cgccgttttc aaattcaacg
     4621 accaagccga ccgctacatt ttcgcccctg ccgcgcgcgg ctaccgcaaa gttgcgccga
     4681 aacccgtccg cgccggcgtg tccaattttt ttaataacct gtgcgacgtg gtcagcttcg
     4741 gcagcaatat cttgcgcttg gacatcaaac gcgcaagcga agaccttgtc cgtgtcggca
     4801 tcaacaccac tttcggtttg ggcgggctta tcgacatcgc cggcgcgggc ggcattcccg
     4861 acaataaaaa caccttgggc gacacgtttg cttcgtgggg atggaaaaac agcaattatt
     4921 tcgtgttgcc cgtcttaggg ccgtccaccg tccgcgacgc gctcggcacg ggtattacct
     4981 ccgtttattc gcccaagaat atcgtcttcc gcacccctgt cggacgctgg ggcacgactg
     5041 ccgtatccgc cgtcagtacg cgcgaaggcc tgctcgattt gaccgacagc ctggacgaag
     5101 ccgccatcga caaatacagc tacacgcgcg acctctatat gaaagtccgt gcgcggcaga
     5161 ccggtgcaac acctgccgaa ggtacggaag ataacatcga catcgacgaa ttggtcgaaa
     5221 gtgccgaaac cggcgcggcg gaaactgccg ttcaagaaga ttccgtatcc gaaacacagg
     5281 cagaagcagc aggggaagcc gaaacgcaac ctggaacaca accttaaagc catgccgtct
     5341 gaaaatccgt gttcggacgg cattcccttc tgtcggaacg gacagtccga aaccacagat
     5401 tgggctataa tctctttttt gcgcataccg cgcgacagca aaggaaaaac catgtacgaa
     5461 gtcaaccgca gcgtattcgt cctcatccct ttagaacctt tttggaactg gctgcaaacc
     5521 ctgccgggca accacctcga cggactgact cttgaagaca tccaagccga cgccaattcc
     5581 taccttgtcc gcccgtgcga aaccgccgac gaagtatggg acgaaatcga agcccgtttt
     5641 gaagacattt tcgccgccga acttgccgac tggtgcgaag acgaacgcga gtggcctgcg
     5701 ctcgatgccg acattttcaa cgaatggttc gacatccagc tttctaccgt catcaccgac
     5761 ctcgaacacg aaccgcttgc ccgcgaagcc ttccaaccca tcaacctgaa ctgatgaagc
     5821 tgaccgtccg caactaccat ctcgacggct acggccatgt caacaatgcg cgctacctcg
     5881 aatttttcga agaagcgcgc tgggcgtttt ttgaagaacg cggactgctg cacgagttgg
     5941 caggcctcat actgattgtc gcccgcatcg acatccgata cagccgcccc gccgtcgaag
     6001 gcgacgtatt gcagttttca tgccgcctga aaacccccgg cacgcgccgt attgtgctga
     6061 cccagacgat tacactgcca aacggcaaaa ccgccgcaga agccgacatc accctgatgc
     6121 ccgtccacgc cgccacacaa cgcaccgtca gcctgcccgc cacccttgcc cgcgcattgg
     6181 aagccttgtc cgaatgaaaa aaatactcac cgccgccgtc gtcgcactga tcggcatcct
     6241 ccttgccatc gtcctcatcc ccgacagcaa aaccgcgccc gccttctccc tgcccgacct
     6301 gcacggaaaa accgtttcca acgccgacct gcaaggcaaa gtaaccctga ttaatttttg
     6361 gtttccctcc tgtccgggtt gtgtgagcga aatgcccaaa atcattaaaa cggcaaatga
     6421 ctataaaaac aaaaacttcc aagtccttgc cgtcgcccag cccatcgatc cgatagaaag
     6481 cgtccgccaa tatgtcaaag actacggttt gccgtttacc gtcatgtatg atgcggacaa
     6541 agctgtcgga caggcgttcg gcacacaggt ttatccgact tccgtcctta tcggcaaaaa
     6601 aggcgaaatc ctcaaaacct acgtcggcga acccgatttc ggcaaactct accaagaaat
     6661 cgataccgcg ctggcacaat agcgatgccg tctgaaacgc aaaaaaaaca gaaacgatgt
     6721 tcctgttttt tcagatcatc cgccccgaca cgttcagacg gcattcaacc ttccggcaga
     6781 ttctttttca ccactgccgg attgcctgcc gccaaagagt agggcggaat gtcttttgta
     6841 accaccgcgc ctgcgcccac gaccgaaccg cgtccgacgg ttacgcccgc cattacaatc
     6901 accctgtgcc ccggccagac atcgtcctcc aacgtaatcg gacggatttc cgtgtagccc
     6961 tcaaagcgtt ttttgaacgg tcaaacttgt ggttatttga ataaaacaga cattccggct
     7021 ccatcatcac atttttgccg accaccagcc cacggcagat ttcacagttt gccccgatgc
     7081 ccgagccgtc gcccaaaacc gtatccggaa acacatacgc cccgcgttcg atattgaccc
     7141 cgcgtccgat atgcggagaa acccgccgcg ccaaaaaacc gcgcacccgt ctgccgacga
     7201 tgccgatgcc gcgcatatgc gacggcggca accccgaacc ggcaaaacgc agcagcagga
     7261 aaaagaattt tgatcccatc aaacctccct caaaagaac
//
LOCUS       DAXIFS010000089         7293 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.089, whole genome shotgun sequence.
ACCESSION   DAXIFS010000089 DAXIFS010000000
VERSION     DAXIFS010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7293
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.089"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            218..430
                     /locus_tag="ACFOCA_001284"
     CDS             218..430
                     /locus_tag="ACFOCA_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFC6988002.1"
                     /translation="METLILDIGGMSCGGCVKSVTRILEGVKGVASVEVSLENKSATV
                     GYDPAQTDAGALIEAVEDGGYDAALK"
     gene            578..2161
                     /locus_tag="ACFOCA_001285"
     CDS             578..2161
                     /locus_tag="ACFOCA_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase regulatory domain-containing
                     protein"
                     /protein_id="HFC6988003.1"
                     /translation="MPNKKKKAAFARAATENGVPDVSNIKNSYDDLMYESGAFSQTAI
                     NNLEVRARLMGLHPAPAANAKVLELGCSMGGNIITQALYYPDAEFVGIDLSGRQVAQG
                     NAIIEKMGLKNVRLEEKDILTVDESFGKFDYIIVHGIWSWVPDAVKDKIFSICRNNLT
                     KHGIAYISYNVYPGWKRQEQLREIMYFAGRDVLEEPLEARTRKGLDALKALAEILEND
                     KGLDGGGKLPAIQKILNHNFYYIAHEYMEAFNDPIYVNGFIEWANRHRLAYIGDTDLH
                     ASFVSWMAEHTRERILALAGGDYIAKEFYSDILSDRQFRRSLLCREEVGDTVRRDESV
                     AVEVIESLNFRPARGETINFDENDTLLSGIRDVMKTGEPFKTEDVAENLARRFPGLTF
                     DRMKINSQLLLQTILGRFSVSSDNAGKPFFEDHKTYVPARFTDYVAAFVEHGAEAFVQ
                     PANRYNESTPSFGYGHLYIMRQLSRPTSKQALIETVAENLNIVSTTPDGLTFHPPAEV
                     YVEEILADLADRHFLVSAD"
     gene            2243..3340
                     /locus_tag="ACFOCA_001286"
     CDS             2243..3340
                     /locus_tag="ACFOCA_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HFC6988004.1"
                     /translation="MNHTFTLPDTRPYPQNPIKNHLLLNAYQLAHNSSQASRKLSSGQ
                     LQTEIRGMLEQNHYINLSLALTMSPDAGTYAALLSSVNAVLDCEKEGEVQWFALPVVL
                     VSGCKKERAIEMKLPTEALFACLQNYPHLRALAQETQWLPYLVHSSDLSAVAPDEWWR
                     AKQNTEAAAKHLRRFASRPLLLPEGQSVHVVYALGFGSGKVQTALGQNLLQAGLPLMQ
                     VWQENLASEGVTLFANPLSPDSPVRALSDGSHTRQRMAMDVFAANAIRAVRMQSPRVG
                     VVAAAKAGGQVLFGFNATDGAFEVVPQVFSWQLSFTDNIGVIQQNFLDLMAECRVEHV
                     YLLHNPLGEQESIPSYAEALKREGHNPFFSA"
     gene            3454..4569
                     /locus_tag="ACFOCA_001287"
     CDS             3454..4569
                     /locus_tag="ACFOCA_001287"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HFC6988005.1"
                     /translation="MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDG
                     GEGTVDAIRHSLDLEEKCLQVTGPFGQKEAMRYFQKEQLALFEVADLVGLGKIPLEKR
                     NPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP
                     VCGQSLLNLASVSTENRYEIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFE
                     AVDQAIQDFYEKVSPATLKLKGAGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKV
                     SDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLVEDLPSLPFENIQAA
                     FSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI"
     gene            4694..5149
                     /locus_tag="ACFOCA_001288"
     CDS             4694..5149
                     /locus_tag="ACFOCA_001288"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFC6988006.1"
                     /translation="MKKPKILFVCLGNICRSPMAEYILRRRAAEAGIPLEADSAGTSG
                     WHDGEDMHRETAKILKKHGIDASGFTSRKIRQSDAAAFDCIIAMDGKNLSELERTFGR
                     RPEKIFKLTDLIPESGYDHVPDPWYTGDFEETFRLADAGCRALLEKISK"
     gene            5220..5696
                     /locus_tag="ACFOCA_001289"
     CDS             5220..5696
                     /locus_tag="ACFOCA_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFC6988007.1"
                     /translation="MKTNFKQKIIEQARSEGLQVTALREQVLDIVLQQSGVIKAYNVL
                     SQMQQQSEGVLAPPTAYRALDFWAEQGVLHKVAAVNGYILCSHAQHECDDHCHDHEEA
                     EAHHSAFILVCTECGTADEQTLSHEWAALRAGVAESGFALKEEHVVLTGICKKCQK"
     gene            5684..6610
                     /locus_tag="ACFOCA_001290"
     CDS             5684..6610
                     /locus_tag="ACFOCA_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6988008.1"
                     /translation="MSEMKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEF
                     GEIGIDGAVLSDNGIPVAEIAGGCLCCTAGPQMGVTVQKMLRDAKPDRLMIEASGLAH
                     AASVIDELKAKPLDSLLEIGAVFTVVNPRQFINPDYAQQALYKDQIGICDVLVASKTD
                     LCTPEQLAEFHDKAAKLFPPKAKVVEVQNAQLDIRWLDIPVIEKSRYRLKALPDNTMG
                     FQSQGFTFPAGRDFDGEKLTNFFNDLPKMTEGLVRAKGVFQVLGTWVWLNWVDGQWGA
                     NQVSWRRDSRFELIAKSFDADLIEQKLKDALE"
     gene            6675..7232
                     /locus_tag="ACFOCA_001291"
     CDS             6675..7232
                     /locus_tag="ACFOCA_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6988009.1"
                     /translation="MKPKFKTVLTALLLAVSLPSMAATHVLMETDMGNIRLVLDESKA
                     PKTVANFVRYARKGFYDDTVFHRVIDGFVIQGGGFTEDLVQKATDKAVANESGNGLKN
                     TAGTIAMARTADPDSATSQFFINLADNDSLNYKNGQYGYTVFGRVESGMNTVSKIARV
                     KTATHGLYQNVPVQPVKIRRIVVGQ"
BASE COUNT         1908 a         1798 c         1899 g         1688 t
ORIGIN      
        1 tgttaatcca ctataaatgc gccgattgcc aaggcaatga tgctcaacca gggtttttgc
       61 gaagcgttca ttgttgttgt cctgatggga attgccgcca ttatgcgcaa gcgtccgtat
      121 tttttcaaac cgccgcaccg tttccgcgtt tgcccaagtt cacgccccga cttacaataa
      181 cgcccgtcag aatgcagtac caacgaaagg aaaaatcatg gaaaccctta tcctcgacat
      241 cggcggcatg agctgcggcg gctgcgtcaa aagcgttacc cggatattgg aaggcgtaaa
      301 aggcgtggca agcgtcgaag tcagccttga aaacaaaagt gcgaccgtcg gatacgaccc
      361 cgcgcaaacc gatgcagggg cgttgattga agccgttgaa gacggcggct atgatgccgc
      421 gttgaaataa agcggcaaaa atgccgtctg aagccttcgc gcctcccaga tgccgtctga
      481 agtacgctcc gcgccttcag atggcatttg atttagttga acgggtagga tgaattggtt
      541 aaacttgcgg gcaatagtgc cttcagacaa acaaaatatg ccgaacaaaa agaaaaaagc
      601 cgcctttgcg cgtgctgcaa cggagaacgg tgtgccggac gtgtccaaca tcaaaaattc
      661 atatgatgat ttgatgtacg aatccggcgc attctctcaa accgccatca ataatttgga
      721 ggtgcgcgcc cgcctgatgg gtttgcatcc cgcgcccgcc gccaatgcca aggtcttgga
      781 gctgggctgt tcgatgggcg gcaacatcat cacgcaggca ctttattacc cggatgcgga
      841 atttgtcggt atcgacttgt ccggcaggca ggttgcgcag ggcaatgcca tcattgaaaa
      901 aatgggcttg aaaaatgtgc gtctggaaga aaaagatatt ttgaccgtcg atgaatcatt
      961 cgggaagttc gactatatca tcgtccacgg catttggtcg tgggtgcctg acgcagttaa
     1021 agacaaaatc ttttcgattt gccggaacaa cctgaccaaa cacggcattg cctatatttc
     1081 atacaatgtt taccccggct ggaaacggca ggagcagttg cgcgaaatta tgtactttgc
     1141 cggcagggat gtgcttgaag aacccttgga agcacgaacg cggaaaggct tggacgcgct
     1201 caaggcgctg gcggaaattt tggaaaacga caagggcttg gacggcggcg gcaaacttcc
     1261 ggcgattcaa aaaatattga atcataattt ttattacatc gcacacgaat atatggaggc
     1321 gtttaacgac ccgatttacg tcaacggctt catcgaatgg gcaaaccgcc accggctggc
     1381 gtatatcggg gataccgatt tgcacgcgtc ttttgtttct tggatggcgg agcatacgcg
     1441 ggagcggatt ctggcattgg cagggggcga ttatattgcc aaagaatttt acagcgatat
     1501 tttatccgac cgccaattcc gccgttcact tttatgccgt gaggaagtcg gggatactgt
     1561 caggcgtgac gagtcggttg ccgtcgaagt gatagaaagt ttgaatttcc gcccggcaag
     1621 aggggaaaca atcaactttg atgaaaacga taccctgctt tcgggcatac gcgatgtgat
     1681 gaaaaccgga gagccgttta aaacggaaga tgttgcggaa aatctcgccc gccgatttcc
     1741 cggtttgaca ttcgaccgta tgaaaatcaa ttcccagctt ttattgcaaa ccattctcgg
     1801 gcgtttttct gtttcatcag acaatgcggg caaaccattt tttgaagacc ataaaaccta
     1861 tgtgccggcg cgttttacag attatgtcgc cgcctttgtg gaacacggcg cggaagcgtt
     1921 tgtccagcct gccaaccgtt acaacgaaag caccccctca ttcgggtacg ggcatttgta
     1981 cattatgcgg caattgtcgc ggccgacgag caaacaggca ttgattgaaa cggttgccga
     2041 aaacttgaac atcgtcagca ccacgcccga cggtttgaca ttccatccgc ctgccgaagt
     2101 gtatgtggaa gaaatattgg cagacttggc agacaggcat tttctcgttt cggcggattg
     2161 acgggcaagt cccgacggca atccgtccga tatattttca gacaggaaag acacacactg
     2221 cgaaaagcgg tacacgacac atatgaacca tacatttacc ttgcccgata cgcgcccgta
     2281 tccccaaaat ccgattaaaa accacctgct gctcaatgcc taccagttgg cgcataattc
     2341 ttcccaggct tcgcgcaaac tctcgtccgg ccaacttcaa accgaaatca ggggaatgct
     2401 tgagcaaaac cactatatca acctttccct cgcgctgacg atgtcgcccg atgccggaac
     2461 ttatgccgcg ctgctttcca gtgtgaacgc ggtactcgat tgcgagaaag aaggcgaagt
     2521 gcagtggttc gccctgccgg tcgtgctggt gtccggctgc aagaaagaac gggcaatcga
     2581 gatgaagctg ccgacggagg cattgtttgc ctgcctgcaa aactatccgc acctgcgcgc
     2641 gttggcgcaa gagacgcaat ggctgcctta tcttgtgcat tcgtccgatt tgagtgcggt
     2701 cgcgccggat gagtggtggc gtgccaaaca aaataccgaa gcggcggcga aacacttacg
     2761 ccgtttcgcc tcgcgccctt tgctgttgcc cgaagggcag tccgtccacg tcgtttacgc
     2821 gctgggtttc ggtagcggca aagttcagac ggcattgggt cagaaccttc ttcaggcagg
     2881 cctgcccctg atgcaggtat ggcaggaaaa tcttgcatcg gaaggcgtta cgctgtttgc
     2941 caatccactt tccccggatt ctccggtacg cgcgctttca gacggcagcc acacgcgcca
     3001 acgtatggcg atggatgtgt ttgcggcaaa cgcgatacgc gccgtccgta tgcagagtcc
     3061 gcgcgtcggc gtggtcgctg cggcaaaggc gggcgggcag gttttattcg ggtttaatgc
     3121 gaccgacggc gcgtttgaag tcgtgccgca ggtgttttcg tggcagcttt cctttaccga
     3181 caatattggc gttattcagc aaaatttttt ggatttaatg gcagaatgcc gtgtagaaca
     3241 cgtttacctg ttgcacaatc ccttgggcga acaggaaagc atcccgagct atgcggaagc
     3301 attgaaacgg gaagggcaca atccgttttt cagcgcatag tgatttgtag tagtgatagg
     3361 ctttctcatt tatataataa atcaaaataa agagcacaac actttttcat tctgtgttgt
     3421 gccttgagtg aaacgaaagg atgaattata aatatgaaga ttgtaattgc accggattcg
     3481 tttaaggaaa gcttgacagc tcaacaggta gctgaagcaa taaaaagagg cttccaacaa
     3541 tcgatagcag atgtggaatg tctcctctgt cctgtcggtg atgggggaga aggcactgta
     3601 gatgctatcc gacattctct tgacctagaa gaaaaatgtc ttcaagtgac aggacctttt
     3661 ggacaaaaag aagccatgcg ctattttcaa aaagaacaac tagccctatt cgaagttgct
     3721 gatttggttg gtcttggaaa aatcccgcta gagaaacgaa atccattaca aatccaaact
     3781 cgtggtattg gagaattgat tcgccacctc attagtcaag aaattaaaga aatctatatt
     3841 ggcgttggcg gtacggccag taatgatgga ggtattggga ttgctgctgg tttaggttat
     3901 caattttatg atgaggatgg aaatgcctta cccgtttgcg gtcaatcctt actaaaccta
     3961 gcttctgttt caacagaaaa tcgctatgaa attcctgaag atgttcacat tcgtatttta
     4021 gcagatgttg tgagtccctt atgtggacac caaggtgcga cctatacgtt tggcaagcaa
     4081 aaagggttgg attctactat gtttgaggcc gtagatcagg caatacaaga tttttatgaa
     4141 aaagtctccc ctgcaacatt aaaacttaaa ggagcaggag ctggtggagg catcgctggt
     4201 ggtttgtgcg cctttgctca ggcaagtatc gtatctggaa ttgacacctg cctggacttg
     4261 attgactttg ataagaaagt gtcagatgtt gacttggtta tcgttggtga aggaagacta
     4321 gatcgtcaaa gtttagcagg gaaagcgcct attggtgtag caaaaagaac ccctgtcgga
     4381 gttcctgttg tcgctatttg tggcagtctc gttgaagatt tgccttccct gccatttgaa
     4441 aatatccaag ctgccttttc tattttggag aaaagtgaac ctttagaaga tagtttgaaa
     4501 aatgccagcc tctatttgga gcatacggct tctaatattg gacacttatt aaatatgcct
     4561 aagatttagc caaaccattt cttccagatg gatgttttgg ctggttctgc cttatgcggt
     4621 tacgattaac cgaccgatgc cgtctgaaag ggtttccgct tcagacggca tcgcgccgga
     4681 acagggaggg gatatgaaaa aaccgaaaat cctttttgtc tgcctcggca acatctgccg
     4741 ttcgccgatg gcggaataca ttttgcgccg ccgcgccgcc gaagcgggca ttccccttga
     4801 agcggacagc gcggggacat cgggctggca cgacggcgaa gatatgcacc gcgagacggc
     4861 aaagatattg aaaaaacacg gtatcgatgc ttcaggcttt accagccgca aaatccgcca
     4921 aagcgatgcg gcggcgtttg actgcatcat cgcgatggac ggcaagaatt tgtccgaatt
     4981 ggaaagaacc ttcggcaggc ggccggaaaa aatattcaag ctgaccgacc tgatacccga
     5041 aagcggttac gaccatgtcc ccgatccgtg gtatacgggc gattttgaag aaaccttcag
     5101 gcttgcggat gcgggctgtc gggcattgtt ggaaaagatt tccaaataaa gcaattgaat
     5161 acaaatataa aaccgcctcc tgccgtatcg gttgttcaga cggcataaac agagaattta
     5221 tgaaaacaaa tttcaaacag aaaattatcg aacaggcacg cagcgaaggc ttgcaggtaa
     5281 ccgctttgcg cgagcaggta ttagatattg tcttgcagca aagcggcgtg attaaagcct
     5341 acaacgtctt gtcgcagatg cagcagcaaa gcgagggcgt gcttgcaccg cctaccgcct
     5401 accgcgccct tgatttttgg gcggagcagg gcgttttgca caaagtggcg gcggtcaacg
     5461 gctatatttt gtgcagccac gcgcagcacg agtgcgacga ccattgccac gaccacgaag
     5521 aagccgaagc gcaccacagc gcgtttattt tggtctgcac cgaatgcggc acggcggacg
     5581 agcaaaccct cagccacgag tgggcggcac tgcgcgcagg cgttgccgaa agcggctttg
     5641 cgctgaaaga agaacacgtt gttttaactg gaatctgtaa aaaatgtcag aaatgaaaaa
     5701 aaccaaagtc cacctgattt caggttttct gggaacaggc aaaaccactg cgctcaaaag
     5761 cctgatggcg caaaaagacc cgaacgaaaa atgggtcatc atcgtcaacg agttcggcga
     5821 aatcggcatt gacggcgcgg tattgagcga caacggtatc cctgtggcag aaatcgccgg
     5881 cggctgtttg tgttgcaccg ccggcccgca aatgggcgta accgtgcaga aaatgctgcg
     5941 cgacgccaag cccgaccgcc tgatgattga agcaagcgga ctggctcacg cagccagcgt
     6001 catcgacgaa ctcaaagcca aaccgctgga cagccttttg gaaatcggcg ccgtctttac
     6061 cgtcgtcaat ccgcgccagt tcatcaaccc cgattacgcg caacaggcgt tgtataaaga
     6121 ccaaatcggc atctgcgacg tattggtcgc cagcaaaacc gatttatgca cccccgaaca
     6181 gcttgccgaa tttcacgaca aagcggcaaa actgttcccg cccaaagcca aagtggttga
     6241 agtccaaaac gcacaactcg acatccggtg gctcgatatt cccgtcatcg aaaaatcacg
     6301 ctaccgcctc aaagccctgc cggataatac catgggcttc cagtcgcaag gtttcacatt
     6361 ccccgccgga cgcgatttcg acggcgaaaa gctgaccaac tttttcaacg acctgcccaa
     6421 aatgaccgaa ggactcgtcc gcgccaaagg cgtgtttcaa gtattgggaa cgtgggtgtg
     6481 gctcaactgg gtagacggac agtggggcgc gaaccaagtc tcatggcggc gcgattcgcg
     6541 ttttgaattg attgccaaat cgtttgatgc ggatttaatc gaacaaaagc tcaaagacgc
     6601 attggaatag cgttcacgcg ccttcagacg gcatatgaaa tgaaaatgcc gtctgaaggt
     6661 ctgaggagga cgggatgaaa cccaaattca aaaccgtttt aaccgcgctg cttttggcgg
     6721 tttccctgcc gtctatggcg gcaacccatg ttttgatgga aaccgatatg ggcaatatcc
     6781 gtttggtttt ggacgagtcc aaagccccca aaaccgttgc taatttcgtg cgctatgccc
     6841 gaaaaggctt ttacgacgac accgtttttc accgcgttat cgacggtttc gttatccagg
     6901 gcggcggatt taccgaagac ttggtacaaa aggcaaccga taaggccgtt gccaacgaat
     6961 ccggtaacgg cttgaaaaac actgccggta ccatcgccat ggcgcggacg gccgatccgg
     7021 attccgccac cagccaattc tttatcaatc tggcggacaa tgattcactc aactacaaaa
     7081 acggacaata cggctatacc gttttcggca gggtcgaaag cggcatgaac accgtttcca
     7141 aaatcgcccg cgtcaaaacc gccacgcacg gcctttatca aaacgtaccc gtacagcccg
     7201 tcaaaatccg tcgcattgtt gtcggacagt aacacgcaga cagatgttca gacggcgtcg
     7261 cccgtttcac aaaaaacgcc gtctgaagtg aaa
//
LOCUS       DAXIFS010000090         7260 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.090, whole genome shotgun sequence.
ACCESSION   DAXIFS010000090 DAXIFS010000000
VERSION     DAXIFS010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7260
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.090"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            168..1160
                     /gene="pheS"
                     /locus_tag="ACFOCA_001292"
     CDS             168..1160
                     /gene="pheS"
                     /locus_tag="ACFOCA_001292"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFC6988010.1"
                     /translation="MENVNRIVAEGIAAVEAAQDFNALEQIKARYLGKTGELTGLLKT
                     LGQMSPEERKTIGAHINECKNRFQTAFNAKRDALNEAKLQARLAAEALDITLPGRAQE
                     GGSLHPVTLTLQRVVELFHGMGFEVADGPEIEDDFHNFQALNIPANHPARAMQDTFYV
                     ENGDVLRTHTSPIQIRYMLDKKEPPIRIIAPGRVYRVDSDATHSPMFHQAEGLWVEEG
                     VTFADLKAVFTDFIRRFFERDDLQVRFRPSFFPFTEPSGEIDIMGENGKWLEVGGCGM
                     VHPNVLRNVNIDPEKYTGFAFGIGLDRFAMLRYNVNDLRLFFDNDLNFLKQFAK"
     gene            1484..1930
                     /locus_tag="ACFOCA_001293"
     CDS             1484..1930
                     /locus_tag="ACFOCA_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HFC6988011.1"
                     /translation="MDRLTPEQRKKCMQSNKSKGTKPELALAKAMWALGLRYRKNSGS
                     IFGKPDFSFKKYKVAVFVDGEFWHGKDWEQRKAEIKGNREFWIAKIERNIRRDMEVTG
                     RLKVEGWAVLRFWSNDVVKNTTCCAEKVRQAVRDKQGLSKFQTREK"
     gene            2001..3095
                     /locus_tag="ACFOCA_001294"
     CDS             2001..3095
                     /locus_tag="ACFOCA_001294"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003683097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6988012.1"
                     /translation="MIFSFFSGAGFLDLGFELSGFDIAFVNEVHPPFLEAYKYSRSRM
                     DIPKPKYGYFKGSIDECLYAEKAKDLAGWVKKEKQNGIIVGFIGGPPCPDFSIAGKNK
                     GKDGENGKLSQSYVDLICKNQPDFFVFENVKGLYRTAKHREFFNALKRQLSDFGYVCT
                     EKLINAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHISFPDALEKDWPTTEEVGR
                     VVSQPANIYPELTVQYWFNRNGVDTHPNASKHFQPRAGLEKFQTISEGDDKKKSYKRL
                     HRWRYSPTAAYGNNEVHIHPYLPRRISAAEALAIQSLPKEFELPDNMTLSNMFKTIGN
                     GVPFLAAKGIAMTLKSYLENHYERTKTDGC"
     gene            3097..4122
                     /locus_tag="ACFOCA_001295"
     CDS             3097..4122
                     /locus_tag="ACFOCA_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003683077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6988013.1"
                     /translation="MVSAIDSLKKNVNYNYVNSSNTHTIQIVHVEKPEGPIKIKRGDT
                     ETSISKQAIWRLADALSTGEPVNVDRVFGASYNFRSALEALLAHTPEIYWCKLQRIQP
                     GLNKSEVVEGHKHIIWLPDRPHEKGVMKEYETDVVISEIPSNNVVYDALSLPSTHSEI
                     DIDVKRRHVQIQIALSAIGFQLGFRTWIARNDQGISYGDKKIADLDGIVQKIESEKLI
                     SSFDGAVQAAMNIDCIWFRNGKLMPAVMEVEHSTGVRSGLARMKQLKDLLPPYANTRW
                     VIVAPDEDRDKVFKEANVPMFKNLDTQYFPYSAVEELYSLCIRRKLTNKAVNEEFLDC
                     FMEKCVM"
     gene            4177..6540
                     /gene="pheT"
                     /locus_tag="ACFOCA_001296"
     CDS             4177..6540
                     /gene="pheT"
                     /locus_tag="ACFOCA_001296"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFC6988014.1"
                     /translation="MQFSYSWLKTQADTELSADKLEHLLTMSGLEVEEAETAAPAFAG
                     VVVAEVKSVEKHPDADRLNVTRVDAGTGELVQIVCGAPNVKAGIKVPCSLPGAVLPGN
                     FKIKPTKMRGVPSNGMLCSTNELGLPDDGVNGLHILPEDAPVGINIREYLDLDDTLFT
                     LKITPNRADCLSVKGIAREVSALTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFI
                     SRVIENVNAKAATPDWMKQRLERSGIRSISVLVDIGNYVMLEIGQPMHVFDADKLSGS
                     LHIRRAREGETLECLNEKTVSLSENTLVVADEKGALSLAGLMGGAASAVSDGTQNIVL
                     EAAWFAPEIIAGKSRQYGFGSDSSFRFERGVDYRLQADAIERATELVLQICGGAAGEM
                     VEAQGELPEAKQVGLRLDRLKTVLGVDIPAEQVETILQHLGLQPEKTAEGFRVTAPSF
                     RFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMLELPETRRSRFAVYNEMAARGYRE
                     VVSYAFVDEQWEQDFAANADPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRV
                     RVFEIARVFGKGSDGRFVQNERIGGLWYGAAMPEQWGGKTRNADFYDIKADVENLLKN
                     KAVEFVKTGYPALHPGRAANIVSDGKVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAV
                     LECGKTRYRAVSKFQPVRRDLAFVMPEAMSHDDLLLVLKGAANKLVQEISVFDVYRGM
                     GLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGAATAAGARLRS"
     gene            6614..6916
                     /locus_tag="ACFOCA_001297"
     CDS             6614..6916
                     /locus_tag="ACFOCA_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HFC6988015.1"
                     /translation="MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEE
                     IKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR"
     gene            6900..7208
                     /locus_tag="ACFOCA_001298"
     CDS             6900..7208
                     /locus_tag="ACFOCA_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988016.1"
                     /translation="MTNNVDLKVPAKRYFTLDELCGLLQISPYGFAQWQHDYGVVVGY
                     GGERYTRLDVVKLLKLQSTFAPYAEGAESGSDGNRPVTLQEIGDGLKELLADLDKELC
                     "
BASE COUNT         1956 a         1577 c         1963 g         1764 t
ORIGIN      
        1 aggcgaggca acgccgtact ggtttaaatt taatccacta tacagaaaat ttatccaatg
       61 gattgaccgt gaagaaaata aggtcgtctg aagagtctga tatgtcaggc tatacaggcg
      121 gcctcgttgt ttcaggtggc atatcattaa ttgacagact tgatattatg gaaaatgtaa
      181 accgcatcgt tgcagaaggc attgccgcag tagaagctgc gcaagacttc aacgctctag
      241 aacaaatcaa agcccgttat cttggcaaaa ccggcgagtt gaccggactt ctgaaaactt
      301 tggggcaaat gtcgcctgaa gagcgcaaaa ccataggtgc gcatatcaat gaatgcaaaa
      361 accggtttca gacggctttt aatgccaaac gcgatgccct caacgaagcc aagctgcaag
      421 cccgacttgc cgccgaagcc ctcgacatta ccctgcccgg acgcgctcag gaaggcggca
      481 gcctgcatcc cgtaaccctg accttgcaac gtgtggtcga actctttcac ggaatgggtt
      541 tcgaagtggc ggacgggcct gaaatcgaag acgattttca caatttccaa gccctgaaca
      601 tccctgcaaa ccatcctgcc cgtgcgatgc aggatacgtt ttacgttgaa aacggtgatg
      661 ttttgcgtac gcacacttcc ccgattcaaa tccgctatat gctcgataaa aaagagccgc
      721 ccatccgcat tatcgccccc ggccgcgttt accgtgtgga cagcgatgcc acgcactcgc
      781 ctatgttcca tcaggcggaa ggtttgtggg tagaagaggg tgtaactttt gccgacttaa
      841 aagcagtgtt cacggatttt atccgtcgct tctttgaacg cgatgatttg caagtacgtt
      901 tccgcccgtc tttcttcccg ttcaccgaac cgtctggcga aatcgacatt atgggcgaaa
      961 acggcaaatg gctggaagtc ggcggctgcg gcatggtgca tcccaacgtg ttgagaaatg
     1021 tgaatatcga tcccgaaaaa tacaccggtt tcgctttcgg tatcggtctc gaccgtttcg
     1081 cgatgctgcg ttacaacgtg aacgatttgc gcttgttttt tgataacgat ttgaattttt
     1141 tgaagcagtt tgcgaaataa tggtgcgggc agcctgcaag cggagtgcaa cccgcatatt
     1201 gtccggccgg acgggctgaa aaagcctgcg gcaagatttc ggcgggattt cggcagatga
     1261 attgatgcgt tctgaagatt tgtgcggatg ggatgcttgg taattttgag tccgtccggc
     1321 tgcgaacctt gcggctttgc agggaaaacc tgacgaaaca ggtggcttcc tgcgcgattg
     1381 ggttttgttg tttccttgca aggggtgcaa aactgccgga atccgcaacg atgccgcgta
     1441 aaatgaatgc gctttcgtat aaacgcgttt caggcctcac gaaatggaca gattaacccc
     1501 cgaacagcgc aaaaaatgta tgcagtccaa caaaagcaag gggacgaagc ccgagcttgc
     1561 gttggcgaag gcgatgtggg ctttggggct caggtatcgg aaaaatagcg gaagcatttt
     1621 tgggaagcct gatttttcat ttaaaaaata taaagttgcc gtgtttgttg atggcgagtt
     1681 ttggcacggc aaggattggg aacagagaaa ggcggaaata aagggcaacc gcgaattttg
     1741 gattgccaag atagaacgca atatccgaag ggatatggaa gtaacaggcc gtctgaaggt
     1801 cgagggctgg gcggttttac gtttttggag taatgatgtc gttaaaaata caacctgctg
     1861 tgccgaaaaa gtcagacaag ccgtccgcga caaacaggga ttgtcaaaat ttcaaacgag
     1921 agaaaaataa tctccccttc cagttgacgg ataaaagctg caatttggat ataagcatac
     1981 ggcaggaaag aaaaaaaact ttgatttttt cttttttctc tggtgcgggc tttttggatt
     2041 tgggcttcga gttgtcagga tttgatattg ccttcgttaa tgaagtccat cccccatttt
     2101 tggaagcata taaatactct cgaagcagaa tggatatccc gaagcctaaa tacggatatt
     2161 ttaagggtag tattgacgaa tgtctttatg ctgagaaagc aaaagatttg gctggctggg
     2221 ttaaaaagga aaaacaaaat ggcattattg tcggatttat tggaggtccc ccatgtccgg
     2281 atttttctat tgcagggaaa aataaaggta aggatgggga gaatggtaag ttatcacaaa
     2341 gttatgtgga tttaatttgt aaaaaccagc ctgatttttt tgtatttgag aatgtgaaag
     2401 gactatatag gactgccaag catagggagt ttttcaatgc gttgaaacgg caactttctg
     2461 attttggata tgtatgcact gaaaaactca tcaatgccat cgaatacggc gtaccgcaag
     2521 acagggaaag gattatccta gtgggttttt tgagtcagca tgttgatgct ttgcagaagt
     2581 ttgattggga tgctcatatt tcattccctg atgccttgga aaaagattgg cctacgacag
     2641 aagaagtagg aagagtggtc agtcagcctg caaacatata ccctgagttg accgttcagt
     2701 attggttcaa tcgcaatggg gtggatacac acccgaatgc gagcaaacac ttccaaccaa
     2761 gagcgggttt agaaaaattt caaaccataa gcgaagggga tgataaaaag aagtcctata
     2821 aacgcctaca ccgctggcgt tattctccga ctgctgcata cggaaacaac gaagtccaca
     2881 ttcatcccta tctgccaaga aggatttccg ctgcggaggc attggcaata cagtctttgc
     2941 cgaaggagtt tgagctgcct gataacatga cattgagcaa tatgttcaaa actataggca
     3001 acggtgtacc gtttttggca gcaaaaggga tagcgatgac attaaaatct tatttggaga
     3061 atcactatga gcggacaaaa actgacggct gctaatttgg tcagtgcgat tgatagcttg
     3121 aaaaaaaatg tcaattataa ctatgtgaac agctcaaata cgcataccat acaaatcgtc
     3181 catgttgaaa aaccggaagg tccgattaag attaaaaggg gagatacgga aacttcgata
     3241 tcgaaacaag caatttggcg gttggcagat gcgttgtcca cgggggagcc tgtcaatgtg
     3301 gacagggtgt ttggcgcaag ttataacttt cgttccgcac tggaggcatt gcttgcccat
     3361 acacctgaaa tttactggtg caaattgcag cggatacaac cgggtctgaa taaaagcgag
     3421 gtggtggaag ggcacaagca cattatttgg cttcccgata ggccacatga aaaaggcgta
     3481 atgaaggaat atgagacaga tgtcgttatt tcggaaatcc cctccaacaa tgtggtttac
     3541 gatgctttat cccttccttc aacccattca gaaatagata tagatgtaaa acgccgccac
     3601 gtgcaaatcc agattgccct ttcagcaata ggttttcaac ttggtttcag gacgtggatt
     3661 gcgagaaacg accaaggtat tagttatggg gataagaaaa ttgctgattt ggatggtatc
     3721 gtacaaaaga tagaaagcga gaaactgatc agttcgtttg acggcgcggt tcaggcggca
     3781 atgaatattg attgcatctg gttcaggaat ggaaaactga tgccggcggt gatggaagtg
     3841 gaacatagta cgggtgtacg ttccggcctt gcacggatga agcagttgaa agacctgttg
     3901 ccaccatatg ctaatacgcg ctgggttatc gttgctcctg atgaagatag ggataaagtt
     3961 tttaaagaag cgaatgttcc gatgtttaaa aatttagata cccaatattt tccttattcc
     4021 gcagttgaag agttgtattc cttgtgcatt cgccggaaat tgacaaataa agctgtcaat
     4081 gaagaatttt tagactgctt tatggaaaaa tgtgtaatgt aatttacact cggttaccct
     4141 taagttgtcc aatcaaattt aatccttagg aaaaatatgc aattctccta ctcatggctg
     4201 aaaacccaag ccgataccga actttccgcc gataagctgg aacatctgtt aacgatgtcc
     4261 ggcttggaag tggaagaggc tgaaactgcc gcacctgcct ttgcgggcgt ggttgttgcc
     4321 gaagtgaaat ccgttgaaaa acatccggat gcagaccgtt tgaacgttac ccgagttgat
     4381 gcgggtacgg gagagttggt tcagatcgtg tgcggtgcgc cgaatgtgaa agcgggcatc
     4441 aaagtgccgt gttcgttgcc gggtgccgtt ttgccgggta atttcaaaat caagccgacc
     4501 aaaatgcgcg gcgtgccatc aaacggtatg ctgtgttcga ccaatgaact aggtttgcct
     4561 gatgatggtg tgaacggcct gcacattttg cctgaagacg cgcctgtcgg tatcaatatc
     4621 cgtgaatact tggatttgga cgatacgctg tttacgttga aaattacgcc taaccgcgct
     4681 gattgcttga gtgttaaggg cattgcgcgc gaagtgtccg cattgacggg gtgcgcgttc
     4741 aggcagcccg aaatccatac cgcgccgatc acgggcagtc gaaaacagcc cgtgcagatt
     4801 aacgcgcctg ccgattgcgg ccgttttatc agccgcgtta ttgaaaatgt caatgcgaaa
     4861 gcggctactc ccgattggat gaaacaacgt ttggagcgca gcggcatccg cagtatttcc
     4921 gtgctggtgg acatcggcaa ttatgtaatg ctggaaatcg gccagccgat gcacgttttc
     4981 gatgccgaca aactttccgg cagcctgcac atccgccgcg cgcgcgaagg ggaaacgctg
     5041 gaatgcctga acgagaaaac cgtttccctg tctgaaaata cgctggtcgt ggcagacgaa
     5101 aaaggcgcgt tgagtttggc gggcttaatg ggcggcgcgg cgagcgcggt ttcagacggc
     5161 acgcaaaata tcgtgctgga agcggcttgg tttgcgcccg aaatcatcgc cggcaaatcg
     5221 cgccaatacg gtttcggttc ggattcgtcg ttccgcttcg agcgcggcgt ggattaccgt
     5281 ttgcaggcgg atgccattga acgtgctacc gaattggtgt tgcagatttg cggtggtgcg
     5341 gcaggcgaga tggtggaagc gcaaggcgaa ttgcctgaag cgaagcaggt tggattgcgt
     5401 ttggaccgtc tgaaaaccgt gttgggcgtg gacattcctg ccgaacaggt ggaaaccatt
     5461 ttgcaacact tgggtctgca gcccgagaaa acggcggaag gcttccgcgt taccgcgccg
     5521 agcttccgtt ttgacatcga aattgaggct gatttgattg aagaaatcgg acgcgtttac
     5581 ggctatgaaa acatccccga cgattacacg tcaggccgtc tgaaaatgct ggaactgccc
     5641 gaaacacgtc gctcgcgttt tgccgtttac aacgaaatgg cggcgcgtgg ctaccgcgaa
     5701 gtggtcagct atgccttcgt tgacgagcag tgggaacaag attttgccgc caacgccgac
     5761 cccatccgcc tgcaaaaccc gctggcggcg caatatgccg tgatgcgttc cacactcatc
     5821 ggcggcttgg tggaaatttt gcaaaacaac ctgaaccgca aacaaaaccg cgtgcgcgtg
     5881 tttgaaatcg cccgcgtgtt cggcaaaggt tcagacggcc ggtttgtcca aaacgaacgc
     5941 atcggcggct tgtggtacgg cgcggcaatg cccgaacaat ggggcgggaa aacgcgcaat
     6001 gcggattttt acgacatcaa ggcagatgtg gaaaatctgt tgaaaaacaa agcggtcgag
     6061 ttcgttaaaa ccggatatcc cgccctgcat cccggacgcg ccgccaatat cgtttcagac
     6121 ggcaaagtca tcggctttgt cggcgaactg catccgaaat ggctgcaaaa atacgacctg
     6181 ccgcaagcgc cgctggtatt tgaaatcgat atggcggccg tgttggaatg cgggaaaacg
     6241 cgctatcggg ccgtatcgaa attccagccg gtgcgccgcg atttggcgtt tgtgatgccg
     6301 gaagctatga gccatgatga tttgctgctt gtcttgaaag gcgcggcaaa caagttggta
     6361 caggaaatca gcgtgtttga cgtgtatcgc ggcatgggac tgcccgaagg gatgaagagc
     6421 gtggcggtca aagtgatttt gcaggatatg gaaaacacgc tgacggatga ggcggtcgag
     6481 ccgcttatcg gaaaactgat tggcgcggca acggcggcag gggcgcggct tcgcagttaa
     6541 aaaataaata ttcgcttgaa ttttaaataa aaattggtaa taatccacaa ctgttacaac
     6601 agaaggtaat catatgactc tcactaaagc agaactggcc gatattttgg tagacaaagt
     6661 cagcaacgtc accaaaaacg atgccaaaga aatcgtcgaa ctcttttttg aagaaatccg
     6721 cagcactttg gcaagcggcg aagaaatcaa aatttccggt ttcggaaatt tccagttgcg
     6781 cgacaagccg caacgcccgg gtcgtaatcc taaaaccggc gaggaagtgc cgattaccgc
     6841 ccgccgcgtg gtaactttcc atgccagcca gaaactcaaa agcatggtgg aacactacta
     6901 tgacaaacaa cgttgatttg aaggttcccg caaaacgcta tttcacgctg gacgagttgt
     6961 gcggactgtt gcaaatcagc ccctatggtt ttgcgcaatg gcagcatgat tatggtgtgg
     7021 ttgtcggtta cggcggcgaa cgctacaccc gtttggatgt ggtgaaactg ttgaaattgc
     7081 agagcacgtt tgcaccgtat gcagaaggtg cggagtcggg ttcggacggc aaccgtccgg
     7141 ttacgcttca ggaaatcgga gacggtctga aagagctgtt ggcggatttg gataaggaat
     7201 tgtgctgatt tgaggccggt tgcaggtatg cagccggttt tgttttacac gctaaaaaat
//
LOCUS       DAXIFS010000091         7117 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.091, whole genome shotgun sequence.
ACCESSION   DAXIFS010000091 DAXIFS010000000
VERSION     DAXIFS010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7117
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.091"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            175..552
                     /gene="acpS"
                     /locus_tag="ACFOCA_001299"
     CDS             175..552
                     /gene="acpS"
                     /locus_tag="ACFOCA_001299"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFC6988017.1"
                     /translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
                     PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
                     ISRVSLSMSDEEDTVLAFVVAEK"
     gene            634..1443
                     /locus_tag="ACFOCA_001300"
     CDS             634..1443
                     /locus_tag="ACFOCA_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6988018.1"
                     /translation="MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGK
                     VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPGQWTGEPQ
                     SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
                     LGSAEGSGANVLMEAAQWQDRPEHADSVWMMVQTREQWRQAQEKGADVVVWRVCNDVQ
                     AQEAAEALRQGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
     gene            1436..1858
                     /locus_tag="ACFOCA_001301"
     CDS             1436..1858
                     /locus_tag="ACFOCA_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988019.1"
                     /translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
                     GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
                     GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
     gene            1907..3049
                     /locus_tag="ACFOCA_001302"
     CDS             1907..3049
                     /locus_tag="ACFOCA_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HFC6988020.1"
                     /translation="MNTLYTLFATCPRGLETVLSQELESLGCTDVQVFDGGVSCRGGL
                     EQVYAANLHSRTAGRILLRLTKGTYRTERDIYKLAKNINWFNWFTLQQTFKVKIEAKR
                     ANVKSLQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLDERNVEIFIDTSGE
                     ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
                     PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQVKPAFAPISGSDSDRRIIQTALANARSA
                     GVDDIVSFSVADAQSVRPNGVGGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG
                     WQVGMFTGDREMPKFMRLSPKRKIPLYNGNLDCRLFLIDMVQGSNR"
     gene            complement(3350..4168)
                     /locus_tag="ACFOCA_001303"
     CDS             complement(3350..4168)
                     /locus_tag="ACFOCA_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6988021.1"
                     /translation="MKGMDKLRYQQDFLNIRPIFTAGEQEYLTGLSDRLPLSVLTGSV
                     RNIEEIGIDFVYSSAKLEGNTYNQYDTQALLKLGQTAGGKLYSDAVMLINLRESYRHL
                     LSGLDSPEPFDWLDFLKTTHSLISENLLEKGSGGVVRRDSVTISGTDYTPLSNPQSLD
                     TELKWLLQEAPKIENPFDRAVYLHNNLAYLQYFKDCNKRTARNCMTLSLMRSGFFPCV
                     FSPDSYPAYAEAVVAYYETGDYGLFKKYFISAYENTVNKYGPQPDMDISRNFSL"
     gene            complement(4235..5485)
                     /locus_tag="ACFOCA_001304"
     CDS             complement(4235..5485)
                     /locus_tag="ACFOCA_001304"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6988022.1"
                     /translation="MTKLTRRQIIRRTAGTLFALSPIASAVAKTVRAPQFTAVRIWPS
                     HTYTRLTLESTTALKYQHFTLDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRNIR
                     AGQNTPDTVRLVIDLKQPSYAQVFSLPPVGGFKNRLVVDLYPQGMDPDDPMMALLNGS
                     LNKTRRGSPEADLAQNTPAQTERGKNGRRPVIMIDPGHGGEDPGAVSPGGLQEKHVVL
                     SIARETKKQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
                     GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
                     KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
                     RRQCAQSIASGVQRYINTSVLKRG"
     gene            complement(5482..5943)
                     /gene="tsaE"
                     /locus_tag="ACFOCA_001305"
     CDS             complement(5482..5943)
                     /gene="tsaE"
                     /locus_tag="ACFOCA_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFC6988023.1"
                     /translation="MSDFPPVSRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
                     TTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEEWEDAGLDELF
                     AANSVCLIEWPQQGGEFTPPADITATLTHDGGGRKCLLTAHTERGRESLPL"
     gene            6133..6945
                     /gene="murI"
                     /locus_tag="ACFOCA_001306"
     CDS             6133..6945
                     /gene="murI"
                     /locus_tag="ACFOCA_001306"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFC6988024.1"
                     /translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
                     PYGTKSKATIENFSMQIVDFLLEHDVKAMVIACNTIAAVAGQKIRQKTGNMPVLDVIS
                     AGAKAALATTRNNKIGIIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW
                     LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAHNVALVDSAITTAEE
                     TARVLAQEGLLNTDNNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
BASE COUNT         1619 a         1893 c         2029 g         1576 t
ORIGIN      
        1 tactaaataa ttggcacgat gttttagaat ttcaaatgca aaaggttaca gtgaaaattg
       61 ttaccgacaa aaccccaaaa gtggatattc acgccatttt aacgccccaa gaaattgacg
      121 gcattcatca tcacattcat cactacccgc aaccaagggc gaaggagcgc aaatatgatt
      181 tacggcatcg gcacagacat tgtttccctc aagcgcatca tccgcttaaa caaaaaattc
      241 ggacaggcgt ttgccgggcg catcctcact ccggaagagc tgcttgaatt tccgcaagcg
      301 ggcaaacccg tcaactacct cgccaaacgc tttgccgcca aagaagcctt cgccaaagcc
      361 gtcggcacgg gcatacgcgg cgcggtttcc ttccgcaaca tcggcatcgg gcatgacgca
      421 ttgggcaagc ccgaattttt ctacggcccc gccctgtcca aatggctgga ggaacaaggc
      481 atcagccgcg tcagcctcag catgagcgac gaagaagaca ccgtattggc gtttgtcgtt
      541 gccgaaaaat aatgccgtct gaaatgcggc aaacccgttg acggcattgc tcgtccctca
      601 tttgcactcc gaccgaccaa ccgcgtaccc gccatgattc aagacacccg accccttatc
      661 cgcgtcgttg ccggcatcct gctcgattca gacggcaact acctgctcag ctcgcgcccc
      721 gaaggcaaac cctatgccgg atattgggaa tttgccggcg gcaaggtcga agcgggcgaa
      781 accgacttcc aagccttgca acgcgagttt gaagaagaac tcggcatccg catccttgcc
      841 gccacgcctt ggctgaccaa aatccattcc tacgaacacg cccgcgtctg cctgaaattc
      901 ctatgggtca accccggcca atggacgggc gaaccgcaat cccgcgaagg gcaggaatgg
      961 tcttggcaga aggcgggtga ttttaccgtt gcccccatgc tgcccgccaa cggcgcgctt
     1021 ttgcgttcgc tgtccgttcc gcgccgtttg tacggcagcc tgaaaacggg tttgcacggg
     1081 gagaacagta tgggcgcgta ccgcgtcctg cctttgggtt cggcagaggg aagcggtgcg
     1141 aacgttttga tggaggcggc gcaatggcag gacagacccg aacacgccga cagcgtgtgg
     1201 atgatggtgc agacccgcga acaatggcgg caggcgcagg aaaagggcgc ggatgttgtc
     1261 gtgtggcgcg tgtgcaatga tgttcaggca caagaggcgg cagaagccct gcggcagggc
     1321 gtatccgtgc cgctcgtact tgcagcaaac ggacagacgg ttgcacgtta tggaaaacta
     1381 tggctcggat tgggggcgca cgtggtggta agggatgaaa caatagggaa gaatcatgaa
     1441 taaaaaccgt aaattactgc ttgccgcact gctgctgatt gcctttgccg ccgtcaagct
     1501 cgttttgttg caatggtggc aggcgcagca gccgcaagct gtggcggcgc aatgcgattt
     1561 gaccgagggt tgcacgctgc cggacggaag ccgcgtccgc gccgccgccg tttcaaccaa
     1621 aaaaccgttt gatatttata tcgaacacgc gcccgccggc acggaacagg tcagcatcag
     1681 cttcagtatg aaaaatatgg atatgggttt caaccgctat atgttcgagc ggcaaccgtc
     1741 ggggacttgg caggcagtac gcatccgcct gcccatctgt gtcgaaggca ggcgcgattt
     1801 tacggcggac attacaatcg gcagtcggac atttcagacg gcatttaccg ccgaataaac
     1861 ctttcaatcc gccattgccg gaacatccgt ccggaaagga cacgttatga atactttata
     1921 tacacttttc gccacctgcc cgcgcggctt ggagaccgtt ttatctcaag aactcgaaag
     1981 cctcggctgt accgatgtac aagtgtttga cggcggcgtt tcctgccggg gcggattgga
     2041 acaggtttac gccgccaacc tgcactcgcg taccgccggc cgcatcctgc tacgcctgac
     2101 caaaggcaca taccgaaccg agcgcgacat ttacaaactt gccaaaaaca tcaactggtt
     2161 caactggttt accttgcagc agacgttcaa agtcaaaatc gaggcaaagc gtgccaacgt
     2221 caaaagcctc caatttgtcg gactgaccgt caaagatgcc gtctgcgacg ctttccgcga
     2281 catttacgac gcacgtccga gcgtggacaa agccgcgccc gatgttcgca tccacgcctt
     2341 tttggacgaa cgcaatgtcg aaatcttcat cgacacttcg ggcgaagccc tgttcaaacg
     2401 cggctaccgt ctcgataccg gcgaagcccc gctgcgcgaa aaccttgccg ccggattgct
     2461 gctctcggca ggctacgacg gcacgcagcc gtttcaagac ccgttttgcg gcagcggcac
     2521 gattgctatc gaagccgctt ggattgccgc ccgccgcgcg ccgggtatga tgcgccgttt
     2581 cggttttgaa aaactgcaaa atttcgataa aacgctgtgg tcggatttgc gccgccgtgc
     2641 cgaagcgcag gttaaaccgg cttttgcacc gatttcgggc agcgacagcg accgccgcat
     2701 cattcagacg gcattggcca acgcacgcag tgccggggtg gacgacatcg tttccttcag
     2761 cgttgccgac gcgcaatccg tccgtccgaa cggcgtgggc ggcattatgg tgtccaatcc
     2821 gccctacggt gtgcgccttg aggaagtccg cgctttgcag gcactgtatc cgcagttggg
     2881 gacgtggttg aaaaaacact atgccggctg gcaggtcggt atgtttaccg gcgacaggga
     2941 aatgcccaaa ttcatgcgcc tgtcgcccaa gcggaaaatt ccgctttata acggcaacct
     3001 cgactgccgc ctgttcctga ttgatatggt gcagggatcg aaccgttgag gaaagtgtac
     3061 aaaaaagccg tctgaaaaat gttcagacgg ctttttttaa tatccggccg atattatagt
     3121 ggattaacaa aaatcaggac aaggcgacga agccgcagac agtacaaata gtacgtaacc
     3181 gattcacttg gtgcttgagc accttagaga atcgttctct ttgagctaag gcgaggcaac
     3241 gccgtactgg tttttgttaa ttcactataa ccgaaggtaa gggaggggtg tgtccactgt
     3301 gccgccgcat ttgccgcgtg cggaagatac ggataacaac cccttggaat taaagggaga
     3361 agttgcggga aatatccata tcaggctggg gaccgtactt atttacggta ttttcgtatg
     3421 ccgaaataaa atatttcttg aataaaccgt aatcgccggt ttcgtaatag gctacgacag
     3481 cctcggcata ggcgggataa ctgtcggggg agaatacgca aggaaaaaaa ccggagcgca
     3541 tcagcgacaa ggtcatgcag tttctggcag tacgtttatt gcaatcttta aaatattgaa
     3601 gatacgccaa attattatgg agataaacgg cgcggtcgaa aggattttct attttgggag
     3661 cttcttgaag caaccatttt aattccgtat ccaaactttg cgggttagat aaaggggtgt
     3721 agtctgtccc gcttatggta acgctgtcgc ggcggactac gccgccggag cctttttcca
     3781 gtaagttttc ggaaatcagg ctgtgggtgg tttttaagaa atccaaccag tcaaacggct
     3841 cggggctgtc caaaccggac agcaggtgcc ggtaactttc cctcaggttg attaacatta
     3901 cggcatccga atataacttc ccgcctgcgg tttgcccgag tttaagcaat gcctgcgtat
     3961 cgtattgatt ataagtgttt ccttccaatt tggcagaact atatacaaaa tcgataccga
     4021 tttcttcaat attacgcacg gagcccgtta aaacagataa aggaagccga tcggacaatc
     4081 cggtcaggta ttcttgttcg ccggctgtaa aaatggggcg gatatttaaa aaatcctgtt
     4141 ggtatctcaa tttatccata cctttcatca taaaaacgcg gtttggggcg gaagtaggtt
     4201 tatgcctgcc ttcatccgac taccgccttt tcaatcaacc ccgcttcaat acggatgtat
     4261 tgatgtagcg ttggacaccc gaggcaatgg attgggcgca ctgccggcgg aaggattcgc
     4321 tgcccagcaa cttctcttca gcagggttgg acaggaaggc ggtttcgacc aggatagacg
     4381 gcatatcggg tgcgcgcaaa acggcgaaat tggcttcgtc caccctgcct ttgtgcaagt
     4441 ggttgagcct gcccaattct tcaagcacca gtttgccgag tttgcggctg tcgcgcagcg
     4501 tggcggtttg ggtcatatcg agcagggcgg tatcgacgtt gcggttgccg ctggtcggta
     4561 cgccgccgac cgcgtcggca ttgttttgcg tctgttccaa gaatttggcg gcggagctgg
     4621 tcgcgccttt ggtgttcagc atatagaccc ccgttccgcg cgcggagggg ctggtgaaag
     4681 cgtcggcgtg gatggagacg aatacgtccg cccgccgtgc tcgccctttg gcgacacgca
     4741 cgcccaatgg gatgaacacg tcttcgttgc gcgtcataaa gacgttgtaa cccaaggctt
     4801 ccaattgttt tttggtttcg cgggcgatgg agaggacgac gtgtttttcc tgcaaaccgc
     4861 ccgggctgac ggcgccgggg tcttcgccgc cgtgtccggg gtcgatcata atgacgggtc
     4921 tgcgcccgtt tttgccgcgt tcggtttgtg cgggagtgtt ttgagcgagg tcggcttcag
     4981 gggagccgcg acgggttttg ttcaggctgc cgttaagcag cgccatcatc ggatcgtcgg
     5041 gatccatccc ttgcggatag agatcgacga cgaggcggtt tttaaagccg ccgacggggg
     5101 ggagggaaaa aacttgcgcg taggaaggct gtttcaaatc gatgacgagg cggacggtgt
     5161 cgggcgtgtt ctgaccggcg cgtatattgc ggataaaggg gtcgtccgcc ataaccttct
     5221 gagacagtcc gtgcaatacg gtattgatgt tcgcgttttg tatgtcgacg accaacctgc
     5281 ccgggttgtc gagcgtgaag tgttggtatt tgagcgcggt tgtgctttcc agcgtcaggc
     5341 gggtgtaggt gtgcgacggc catatccgta cggcggtaaa ctgcggggcg cgtaccgttt
     5401 tggcaacggc ggatgcgatg gggcttaggg cgaacagtgt gccggcggtg cggcggatga
     5461 tttgtcttcg tgtcagtttg gtcatagcgg caggctttcg cgtcctcgtt cggtatgggc
     5521 ggtcagcagg cattttctgc cgccgccgtc gtgtgtcaat gttgcggtga tgtcggcggg
     5581 cggggtaaat tcgcctccct gttgcggcca ttcgatcagg cagacgctgt ttgcggcaaa
     5641 cagttcgtca agccccgcgt cttcccattc ttcggggaac gagaagcggt agaggtcgaa
     5701 atggtgcagg gtgaagcgtt ccagcggata agattcgacg atggcgtagg tcgggctttt
     5761 gactgcgccc tgatgaccca atccgcgcag gatgccgcgt gtcagcgtgg ttttgcccgc
     5821 acccaaatcc ccttcgagat aaatgaccag cggtgcgttt aaacgggaag accacgccgc
     5881 acccaaatcg agtgtggcgg cttcgtcggc aaggaatcgg gaaacgggag gaaaatcaga
     5941 cataggggct ttacaacttt tatgtggcgg atcggagggg caggcggtcg gcaaaccgtg
     6001 cgcccggcgg cagcattgcc gtacattata acagccaaat ccgcatcctg ctttcagacg
     6061 gcaacggctg tcaagaaaaa gcggcgcgtg tacaatacgc ggattgtatg tttaggacgg
     6121 attggaaaaa gaatggaaaa tatcggcagg cagcgaccca tcggcgtttt tgactcggga
     6181 atcggcggtt tgaccaatgt gcgagcgctg atggaacggc tgccgatgga gaacatcatt
     6241 tatttcggcg acacggcgcg cgtgccttac gggacgaaat ctaaggcgac catcgaaaat
     6301 ttctcgatgc agattgtcga ttttttattg gaacacgatg tcaaggcgat ggttatcgcg
     6361 tgcaatacga ttgcggcggt ggcggggcag aaaatccgtc aaaaaaccgg caatatgccc
     6421 gttttggacg tgatttccgc cggcgcgaaa gccgcgctgg caacgacgcg caacaataaa
     6481 atcggcatta tcgccaccaa tacgacagtc aacagcaacg cctatgcgcg cgccatccac
     6541 aggaacaacc ccgatacgct cgtccgcacg caggccgcgc cgctgctcgt ccctttggtg
     6601 gaggaaggtt ggttggaaca tgaagttacc cgcctgaccg tatgcgaata cctcaaacca
     6661 ttgcttgcgg acggcatcga tacgctggtg ttgggctgca cgcactttcc cttgctcaaa
     6721 cccttaatcg gcagggaggc gcacaatgtc gcactggtcg attccgcgat tacgactgcc
     6781 gaagaaaccg cacgcgtcct tgcgcaggag ggattactca ataccgacaa caacaatccc
     6841 gactaccgtt tttatgtcag cgatattcct ttgaaattca gaaccatcgg cgagcgtttt
     6901 ctgggcagga cgatggagca gattgaaatg gtgtctttgg gttagcggca ggtacggacg
     6961 gaaaccgtcc ccgtccgcgc catccgcata cgcacccgca acgccctgcc gtattaaacg
     7021 ccccgtcgcc gcaaatgccg tctgaaaggc ttcagacggc attttttaca caattcccac
     7081 cgtttcccat ccttctcgat acactgtaat ctcgaaa
//
LOCUS       DAXIFS010000092         7078 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.092, whole genome shotgun sequence.
ACCESSION   DAXIFS010000092 DAXIFS010000000
VERSION     DAXIFS010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7078
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.092"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..796
                     /locus_tag="ACFOCA_001307"
     CDS             <1..796
                     /locus_tag="ACFOCA_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HFC6988025.1"
                     /translation="LYKPLLTVQIIGVVFILALSLLLGVREKRRIVRELGALPAVADL
                     IKPVPLSEEEQKLARPKLFWWNVLLFLAAMSLLFSGIFPPGYVFMLAATAALLLNYRS
                     PQEQMERIYAHAGGAVMMASIILAAGTFLGILKGAGMLDAISKDLVHILPDALLPYLH
                     IAIGVLGIPLELVLSTDAYYFGLFPIVEQITSQAGVAPEAAGYAMLIGSIVGTFVTPL
                     SPALWMGLGLAKLSMGKHIRYSFFWAWGLSLAILASSIAAGIVPLP"
     gene            1019..1194
                     /locus_tag="ACFOCA_001308"
                     /pseudo
     CDS             1019..1194
                     /locus_tag="ACFOCA_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692565.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            1190..2440
                     /locus_tag="ACFOCA_001309"
     CDS             1190..2440
                     /locus_tag="ACFOCA_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6988026.1"
                     /translation="MFVPLAMLAGMFSYYETFHETEALQDDLLRQAALYVAPDSKPET
                     LPEGDGDTRILVQMPQQEDPVVSLPAHLADGLHTLQADGDDDYYRVYIRTTEQGRIAV
                     MQENEYREDLAADAARQSVLPLLAALPLMILLTVWITHKAMRPVRKLSQSLEQRRIND
                     LSALSVDNIPSEIRGFVTAINLLLKRADEDIRHRQRFVADAAHELRTPMTALSLQAER
                     LNNMSLPPDAARQPAVLQQSIRRNKHLLEQLLALARSQSDETPLTKTTFGLQSRFRQV
                     LQELMPLALEKRQDIGVAVRGDVEVSADETEIYTLIKTFADNAVRYTPPEGRIDLGFT
                     DEGKYLAVWVEDNGNGIPESERARVLDPFYRILGMEQQGTGLGLSIADTLATEYGRYL
                     ELSDSRRFGRGLLIRALLDKESLK"
     gene            complement(2474..3967)
                     /gene="rng"
                     /locus_tag="ACFOCA_001310"
     CDS             complement(2474..3967)
                     /gene="rng"
                     /locus_tag="ACFOCA_001310"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HFC6988027.1"
                     /translation="MLSGLPIPKDIARPPETILVNITPQETRVAVLEENNICELHIER
                     NSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLERAAFLHIVDVLEQRRNPEETQRIEHM
                     LFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVSQRIEDDAERSSL
                     RERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQAKIRPPETLLY
                     QDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELFKGERPLFE
                     THNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLE
                     ACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLG
                     LVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRI
                     LAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDIVLM"
     gene            4180..4437
                     /gene="grxC"
                     /locus_tag="ACFOCA_001311"
     CDS             4180..4437
                     /gene="grxC"
                     /locus_tag="ACFOCA_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HFC6988028.1"
                     /translation="MQTVTMYTGPFCPYCAMAKRLLHAAGVGHIDEIRVDASPEAFAE
                     MQQLSGQRSVPQIFIGETHVGGFTDLYRLQQEGGLDGLLNP"
     gene            4458..4901
                     /gene="secB"
                     /locus_tag="ACFOCA_001312"
     CDS             4458..4901
                     /gene="secB"
                     /locus_tag="ACFOCA_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HFC6988029.1"
                     /translation="MSEELQPVFSIERLYVKDLSLEVPHAPQIFLEQGEPEVDMRVST
                     GSQKLEDGYYNVDVTVTVTAKLDNERTMFLNEVTQSGIFRLENIPEEDVQLLLGVACP
                     NILFPYAREAVSGTVTRAGFPPVLLAPINFEAIYQQQQEAEAAGA"
     gene            4987..7029
                     /gene="recG"
                     /locus_tag="ACFOCA_001313"
     CDS             4987..7029
                     /gene="recG"
                     /locus_tag="ACFOCA_001313"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFC6988030.1"
                     /translation="MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETH
                     IMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQ
                     TAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
                     QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKF
                     DELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKVVSEICRDM
                     AQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIKFKQWLE
                     PLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQH
                     RFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRL
                     VNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTATETLEQLQTALPELNIG
                     LVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH
                     QLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLG
                     ARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV"
BASE COUNT         1507 a         1884 c         2064 g         1623 t
ORIGIN      
        1 attgtataaa cctttgttga cggtgcaaat tatcggtgta gtgtttatcc ttgcgctgtc
       61 cctgcttttg ggtgtgcgtg aaaaaaggcg gattgtccgg gagttgggcg cgttgcccgc
      121 cgtggcggat ttgataaagc cggtgccttt gtcggaagaa gaacaaaaat tggcgcgtcc
      181 gaaactgttt tggtggaatg tcctgctgtt tttggcggcg atgagcctgc ttttttcggg
      241 catcttcccg ccgggttatg tatttatgct ggctgcaacg gcggcgttgc ttttgaatta
      301 ccgcagcccg caggaacaga tggagcggat ttatgcccac gccggcggcg cggtgatgat
      361 ggcgtccatt attttggcgg caggtacgtt tttggggatt ttgaagggtg cggggatgtt
      421 ggacgcgatt tccaaagacc ttgtgcatat cctgccggac gcgctgctgc cttatctgca
      481 tattgccatc ggtgtgttgg gcattccgct tgagttggtt ttgagtacgg acgcttatta
      541 tttcggactg tttccgattg tggagcagat tacctcgcag gcgggcgtgg cgcctgaagc
      601 agcaggttat gcgatgttga tcggcagtat cgtcggcact tttgttacgc cgctttcgcc
      661 ggctttgtgg atgggcttgg gtttggcgaa attgtcgatg ggcaaacaca tccgttattc
      721 gtttttctgg gcgtggggtt tgtcgctggc gatattggcc agttcgatag cggcaggaat
      781 cgtgcctctg ccgtaaacgg cgaagccgtc tgaagcccga atcgttcctg tggtctgtcg
      841 caggctctgc ctgcctgccc gtgtgttgca atcgcgcccc aatgccgtct gaaggcagtt
      901 gccggcgcgg tttttttgtg ctgcagtttt gaaaaatacc ggcaagcgta aagaccgcta
      961 aattgcggct aattttgggg tgttagaata ggcacggttt attttgaagg gaaagttgat
     1021 gcgtgttttg ctggtggaag acgatgcgat gattgcggag gcggtgtcgg caagtttgaa
     1081 agacggcggc tatgcggtgg attgggtcaa aaacggcgcg cggttgccgc tgcccagcct
     1141 tatgacttga tgctgctgga tttgggtttg ccggggcggg acggtttgga tgtttgttcc
     1201 gctggcaatg cttgcaggta tgttttccta ctacgaaacc ttccacgaaa cggaagcgtt
     1261 gcaggacgac ctgctccgtc aggcggcatt gtacgtcgcc cccgattcca aacccgaaac
     1321 tttgcccgag ggcgacggcg atacgcgtat tttggtacag atgccgcagc aggaagaccc
     1381 tgttgtcagc ctgcctgcgc atctggcgga cggtctgcac acgcttcagg cggacgggga
     1441 cgacgattat taccgcgtct atatccgcac gaccgaacag ggacggattg ccgttatgca
     1501 ggaaaacgaa taccgtgaag atttggcggc ggatgcggca cggcaaagcg tgttgcccct
     1561 gctggcggca ctgccgctga tgatactgct gaccgtgtgg attacgcaca aagccatgcg
     1621 ccccgtccgc aaattgtcgc aaagtctcga acaacgccga atcaatgacc tgtctgcttt
     1681 gagtgtggac aatattccca gtgaaatcag agggttcgta accgccatca acctgctttt
     1741 gaaacgtgcg gatgaagaca tccgccaccg tcagcggttt gtcgccgacg cggcacacga
     1801 attgcgtacg ccgatgacag ccctttccct tcaggcggaa cggctcaaca atatgtcgct
     1861 cccacccgat gcagcgcggc agcctgccgt tttgcagcag agcatcaggc gcaacaaaca
     1921 cctgctcgaa cagcttttgg cactggcgcg ttcgcagtcg gacgaaaccc ctctgacgaa
     1981 aacgacattc ggtctgcaaa gccgtttccg ccaagtgttg caggaactga tgccgctggc
     2041 tttggaaaaa cgtcaggaca tcggtgtggc ggtcagaggc gatgtcgaag tgtctgccga
     2101 cgaaacagaa atctatacgc tgattaaaac ctttgccgat aacgcggtac gttacacgcc
     2161 gcctgaaggc aggatagatt tgggtttcac ggacgaaggg aaatatcttg ccgtgtgggt
     2221 ggaagataac gggaacggca ttcccgaatc cgaacgcgcc cgcgtcctcg atccgtttta
     2281 ccgtattttg ggaatggagc agcaggggac ggggctgggg ctgtccatcg ccgacacgct
     2341 tgccacagaa tacggcagat atttggaatt gtccgacagc cgccggtttg ggcgcgggct
     2401 gctgatacgc gccttgttgg acaaggaatc cctgaaatag acagatgccg tctgaaggct
     2461 tcagacggca tttttacatc aaaacgatgt cgtattgttc ctgcgtgtaa gcggtttcga
     2521 ctgccagaga aatcggtttg ccgatgaaat ctatcagcat tgccaaggat tgcgattctt
     2581 cgtccaaaaa caaatcgatg acgttggggg cggcgaggat gcggaaactt tcggcatcgt
     2641 aacggcgcgc ttcgcggacg atttcgcgct ggatttcgta gcatacggtt tgcggcgttt
     2701 tcagacggcc tctgccttgg caggaagggc agggttcgca gaggacttgg tttaagtttt
     2761 cgcgcgagcg tttgcgcgtc agctcgacca gtcccaggct ggtaaaaccg tgcagggtaa
     2821 cgcgggtacg gtcgaaggcg agggctttgg caagctcctg caacacggct tcgcggtggc
     2881 tttcctgcgc catatcgatg aagtcgatga tgatgatgcc gccgaggttg cgcagcctca
     2941 attcgcgggc gatggtgtgg caggcttcga ggttggtgcg gaaaatcgtt tcatcgaaat
     3001 tgcgtgcgcc gacgaagccg ccggtgttca cgtctatcgt ggtcatcgct tcggtggatt
     3061 cgataatcag gtagctgccg aagttgaggt tgacgcgcgg ttgcagggcg cggctgattt
     3121 cctgctcgac gttgtgggtt tcaaatagcg ggcgttcgcc tttgaacaat tctatcctgc
     3181 ccaatgcgcc gtggacgtat tgttcggcaa aacgcgtcat gcggccgtgg tttacggtgg
     3241 aatcgacgag gattttttgc gtgtcgcagc cgaccatatc gcgcaacacg cgcaaactca
     3301 agggcaaatc ctgataaagc agggtttccg gcggccggat tttcgcctgt tcttggatgt
     3361 gttcccacac tttggtcagg tagtcgatgt cggactggag ctgttcgtcg gtggcgtttt
     3421 cggcgttggt gcggatgatg tagccccggc aggcattttc cggcaggagc ttgtcgaggc
     3481 gttcgcgcag gctgctgcgt tcggcatcgt cttcgatgcg ttgggacacg ccgatgtggt
     3541 cttcttgcgg aagatggacg aggaaacgcc ccgccagcga gatttgggtg gaaagccgcg
     3601 cgcctttggt gttgatcggg tctttgatga cctgcaccaa aacagactgc ccttcaaaca
     3661 gcatatgttc gatgcgctgg gtttcttcgg ggttgcggcg ttgttcgagg acatcgacga
     3721 tgtgtaaaaa cgccgcgcgt tccaagtcga tgtcgataaa cgcgctctgc atcccaggca
     3781 gcacgcggcg caccacgccc aaatagatat tgccgactag gctgtgttcg ctgttgcgct
     3841 cgatgtgcag ctcgcagata ttgttttcct ccaacaccgc tacgcgcgtt tcctgcggcg
     3901 tgatgttgac caatatcgtt tcgggcgggc gcgcgatgtc tttggggatg gggagtcctg
     3961 acaacatggt ttttcctgaa aatgtaataa aaatattttg catccgttcc gccgcgcagc
     4021 gcgggtgcaa aaatattttt cacaatgtct atcatacttt aaaaaagaaa ctttgacaca
     4081 ttccgcacat gccgtttgaa cgtgcatctg ttccgcactt gccaaacagg ggaaatgccc
     4141 ctatattgat tatcattgca aaactttcgg aaacccaata tgcagaccgt taccatgtac
     4201 acaggtccgt tttgtcccta ctgcgcgatg gcgaaaaggc tgctgcacgc ggcaggtgtc
     4261 ggacatatcg acgaaatccg tgtcgatgca agccccgaag cctttgccga aatgcagcag
     4321 ctttcgggac agcgcagcgt gccgcagatt ttcatcggcg aaacgcacgt cggcggattt
     4381 accgacctct accgcctcca gcaggaaggc gggctggacg gactgctgaa cccttaaccc
     4441 ccaactagga aaacaaaatg agcgaagaac tgcaacccgt attcagcatc gagcgactgt
     4501 atgtcaaaga cttgtctttg gaagtgccgc acgcgccgca aatctttttg gaacagggcg
     4561 agcccgaagt ggatatgcgc gtttccaccg gcagccaaaa gctggaagac ggctactaca
     4621 acgtggatgt aaccgttacc gtaaccgcca aattggataa cgagcgcacg atgtttttga
     4681 acgaagtaac ccaaagcggt attttccgtt tggaaaacat ccccgaagaa gatgtgcagc
     4741 tgctgctggg cgtggcgtgt ccgaacatcc tcttccctta cgcgcgcgaa gccgtttccg
     4801 gtacggtaac acgtgccggc ttcccgcccg tcctgctcgc gccgattaat tttgaggcga
     4861 tttaccaaca acagcaggaa gccgaagccg ccggggcttg attcctgcct gccgatgccg
     4921 tctgaatccg tttcagacgg tatttttgtt ttcggataaa ataggtgcgt tcaaaggaat
     4981 ctgcctatga tgtcgcccga aacccagaaa cagctcaaaa tcaccgatgt ttccgccaag
     5041 aagctcgaca aactcaacct ccataccgcg tgggatttgg tgttgcacct gccgctgcgt
     5101 tacgaggacg agacgcacat tatgccgatt aaggacgcgc cgattggcgt gccgtgccag
     5161 gtcgagggcg aggttatcca tcaggaagta acgttcaaac cgcgcaagca gttgattgtc
     5221 caaatcgccg acggttccgg cagcgtcctt tttctgcgct tcatccactt ttacgccagc
     5281 catcagaaac agacggcggt cggcaaacgc atccgcgccg tgggcgaaat caaacacggc
     5341 ttttacggcg acgagatgat tcatcccaaa atccgcgatg ccgagggcgg cggtttggcg
     5401 gaaagcctca cgccggttta cccgaccgta aacggtttga accagcccac tttgcgccgt
     5461 attattcaga cggcgttgga cgttacgccg ctgcacgaca cgctgcccga tgccctgctg
     5521 tgccgtctga agctgccaca cctcgccgaa agcctgcgtc ttttgcattc gccgccgccg
     5581 agtttcacga ttcatcagct ttcagacggc acgctgcctg catggcaacg gctcaaattc
     5641 gatgaacttt tggcgcaaca gctttcgatg cgcttggcgc gacagaagcg tatcggcggc
     5701 acggcggcgg cattgggcgg cgacggcaca ttgacccaag ccctgcgcca agccctgccg
     5761 tttgccctga ccgatgcgca agaaaaagtt gtttccgaaa tctgccgcga tatggcgcaa
     5821 acctacccga tgcaccgcct gctgcagggc gatgtcggca gcggcaaaac cattgtcgcc
     5881 gccttgtccg cgctgaccgc catcgaatcc ggtgcgcagg tggctgtaat ggcgcccact
     5941 gaaatccttg ccgaacaaca ttttattaaa tttaaacaat ggctcgaacc tttgggcatt
     6001 gaagttgtcc gcctttttgg cagtttgcgt aaaaaagcca aagacgaagc caaagccaaa
     6061 ctcgccgacg gcagcgtcaa aatcgccgtc ggcacgcacg ccctgttttc agacggcgtg
     6121 gcgtttcaca atttgggctt gaccattgtg gacgaacagc accgtttcgg cgttgcccaa
     6181 cgcctcgccc tcaaaaacaa agggcgcgaa gtccatcagc tgatgatgtc cgccacgccc
     6241 atcccgcgca cgcttgcgat gagttttttc gccgatttgg acgtgtccgt catcgacgaa
     6301 ttgccgcccg ggcgcacacc gattaaaacg cgcctcgtca acaacgtccg ccgcgccgaa
     6361 gtcgaaggct tcgtcctcgg cacttgccga aaagggcggc aggcgtattg ggtctgccca
     6421 ttgattgaag agagcgaaac cctgcaactg caaactgcta ccgaaaccct agagcagctt
     6481 cagacggcct tacccgaact caacatcggc ttggtacacg ggcgcatgaa agccgccgaa
     6541 aaagccgaag tcatggctca gtttgccgca ggccgtctga acgtcttggt cgccaccacc
     6601 gtcatcgaag tcggcgtaga tgtgcccaac gccgccctga tggtgatcga acacgccgag
     6661 cgcatgggct tggcgcagct gcaccaatta cgcggtcggg tagggcgcgg cgcggcagaa
     6721 agcgtgtgcg ttctcctgtt tgccgagcca ttgagcgaac tcgccaaagc gcggttgaaa
     6781 gtcatctacg aacacaccga cggctttgaa atcgcccgcc aagacctcaa catccgcggc
     6841 cccggcgaat ttctcggcgc gcgtcaaagc ggcgtgccta tgctgcgttt cgccaagctc
     6901 gaagaagact tacacctttt ggaacaagcg cgcgaaatcg ccccgatact gattgagcaa
     6961 aaccccgaaa tcgtcgaagc gcatttggca agatggcttt ccggcaggga agggtatttg
     7021 ggcgtgtgag caaaatgccg tctgaaatat tagaaaaaaa agtgtaacgg aaatctga
//
LOCUS       DAXIFS010000093         7033 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.093, whole genome shotgun sequence.
ACCESSION   DAXIFS010000093 DAXIFS010000000
VERSION     DAXIFS010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.093"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            215..661
                     /gene="iscR"
                     /locus_tag="ACFOCA_001314"
     CDS             215..661
                     /gene="iscR"
                     /locus_tag="ACFOCA_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HFC6988031.1"
                     /translation="MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQ
                     LFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHHGA
                     PCLTHDLWENLNKTINDYLGSVTLQSIIEQKNNGDGSRVVQFTHIH"
     gene            690..1904
                     /locus_tag="ACFOCA_001315"
     CDS             690..1904
                     /locus_tag="ACFOCA_001315"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HFC6988032.1"
                     /translation="MTVKTPVYLDYAATTPVDKRVAEKMIPYLTETFGNPASNSHAFG
                     WEAEEAVEKARADIAALINADPKEIVFTSGATESDNLAIKGAANFYKTKGKHLITVKT
                     EHKAVLDTMRELERQGFEVTYLGVQENGLIDLEELKAAIRDDTILISVMWANNEIGVV
                     QDIPAIGEICRERKIVFHVDAAQACGKVPVDVEAAKIDLLSMSAHKVYGPKGIGALYV
                     RRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRIAKEELEQDMAHYRKLRDI
                     FLKGIEGIEEVYINGDLEHRAPNNLNVSFNFVEGESLIMAVKELAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSLRITFGRMTTEEEVQFAAELIKSKIGKLRELSPLWEMFKD
                     GIDLNSIEWAAH"
     gene            1971..2099
                     /locus_tag="ACFOCA_001316"
     CDS             1971..2099
                     /locus_tag="ACFOCA_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988033.1"
                     /translation="MNEQDLDLDNLDNLLDDFDGVTVEGGVDSENDDGCEGGACKI"
     gene            2165..2551
                     /gene="iscU"
                     /locus_tag="ACFOCA_001317"
     CDS             2165..2551
                     /gene="iscU"
                     /locus_tag="ACFOCA_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HFC6988034.1"
                     /translation="MAYSDKVIDHYENPRNVGTFDKNDESVGTGMVGAPACGDVMRLQ
                     IKVNDEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDDALAIKNSEIAEELELPPV
                     KIHCSILAEDAVKAAVADYRKRQENR"
     gene            2638..2958
                     /gene="iscA"
                     /locus_tag="ACFOCA_001318"
     CDS             2638..2958
                     /gene="iscA"
                     /locus_tag="ACFOCA_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HFC6988035.1"
                     /translation="MITLTENAAKHINDYLAKRGKGLGVRLGVKTSGCSGMAYNLEFV
                     DEADGDDLIFEGHGARIYIDPKSLVYLDGTQVDYTKEGLQEGFKFENPNVKDSCGCGE
                     SFHV"
     gene            complement(2918..3139)
                     /locus_tag="ACFOCA_001319"
     CDS             complement(2918..3139)
                     /locus_tag="ACFOCA_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor A"
                     /protein_id="HFC6988036.1"
                     /translation="MGGKVQHNKGKIRDNALKALVKSDLFRHKVERKRKGKGSYNRQE
                     AKKWRDGFDTVPPFLCLKRGSFRRSRRSL"
     gene            3221..3721
                     /gene="hscB"
                     /locus_tag="ACFOCA_001320"
     CDS             3221..3721
                     /gene="hscB"
                     /locus_tag="ACFOCA_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001671 - ATPase activator activity
                     [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HFC6988037.1"
                     /translation="MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFE
                     QKQAVMMSSTINDAYRTLKNPIDRAAYLLKTSGIDADAPEHTAFAPEFLMQQMEWRET
                     LMEARAGNDLESLKNLDNEIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRN
                     EISSAL"
     gene            3819..6569
                     /gene="gyrA"
                     /locus_tag="ACFOCA_001321"
     CDS             3819..6569
                     /gene="gyrA"
                     /locus_tag="ACFOCA_001321"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HFC6988038.1"
                     /translation="MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQ
                     NFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS
                     EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELID
                     IIQAPDFPTGATIYGLSGVREGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQ
                     VNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTP
                     LQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGK
                     AVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAA
                     NIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPER
                     ITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTT
                     DYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRN
                     SRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGI
                     KAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISD
                     GIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQV
                     LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG
                     VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVISNVTEPEV
                     EN"
     gene            6726..7033
                     /locus_tag="ACFOCA_001322"
                     /pseudo
     CDS             6726..7033
                     /locus_tag="ACFOCA_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1985 a         2042 c         1654 g         1352 t
ORIGIN      
        1 atttcaacat ttactgcacc cgccgccgct cccacttcaa gcggcataag gtttagaatt
       61 caaaaataat atattaaaat caaaatatta aaaatcaatc aatctgccga tttaaacagc
      121 caatcgcgca atccgccccc atacttgact gaaacactca gatattggac aattccgccc
      181 actataaaaa aagccgacac gggcaaccac caccatgaga ctgaccacca aagggcgttt
      241 cgccgttacc gctatgctgg atttggcgat gaacgcgcaa accggcgccg tcaaactcag
      301 tgccatcagc gaacgccaaa acatatccct ctcctatctc gagcaattgt tcggcaaact
      361 ccgccgcgcc ggacttgttg aaagcctgcg cgggcccggc ggcggctaca tcctcgccgc
      421 accggcggca cgcatcaaca tcgcccaaat catcgccgcc gccgaagacc ggctggacgc
      481 gacccaatgc ggcagcaaag ccaactgcca ccacggcgcg ccctgcctga cgcacgacct
      541 ttgggagaat ttaaacaaaa ccatcaacga ctacctcggc agcgttaccc tgcaaagcat
      601 catcgaacag aaaaacaacg gcgacggcag ccgcgtcgtc caatttacac acatccatta
      661 aataacaccc gaaaaagaaa gggcaaacca tgaccgtcaa aacccccgtt tacctcgact
      721 acgccgccac cacccccgtt gacaaacgcg ttgccgaaaa aatgattccc tatctgaccg
      781 aaaccttcgg caaccccgcc tccaacagcc acgcattcgg ctgggaagca gaagaggccg
      841 tcgaaaaagc ccgcgccgac atcgctgccc tgattaatgc cgaccccaaa gaaatcgtct
      901 tcaccagcgg cgcgaccgag tccgacaacc tcgccatcaa aggcgcggca aacttctaca
      961 aaaccaaagg caaacacctc atcaccgtca aaaccgaaca caaagccgtt ttagatacaa
     1021 tgcgcgaact cgaacgccaa ggttttgaag taacctacct cggcgttcaa gaaaacggtt
     1081 tgattgattt ggaagaactc aaagccgcca tccgcgacga caccatcctg atttccgtaa
     1141 tgtgggcaaa caacgaaatc ggcgtggtgc aagacattcc cgccatcggc gaaatctgcc
     1201 gcgaacgtaa aatcgtcttc cacgtcgatg ccgcccaagc ctgcggcaaa gtgcctgtcg
     1261 atgtcgaagc cgccaaaatc gacctgctct cgatgtccgc gcacaaagtg tacggcccca
     1321 aaggcatcgg cgcgctgtac gtccgccgca aaccgcgcgt ccgcctcgaa gcccaaatgc
     1381 acggtggcgg ccacgaacgc ggcttccgca gcggcacatt accgacccac caaatcgtcg
     1441 gtatgggcga agccttccgc atcgccaaag aagaactcga acaagatatg gcgcactacc
     1501 gcaaactgcg cgacatcttc ctcaaaggca tcgaaggcat cgaagaagtc tatatcaacg
     1561 gcgacctcga acaccgcgcc ccgaacaacc tgaacgtcag cttcaacttc gtcgaaggcg
     1621 aaagcctgat tatggcagtg aaagaactcg ccgtatccag cggctccgcc tgcacctccg
     1681 cctcgctcga acccagctac gtcctgcgcg cattgggcag aaatgacgaa ttggcgcact
     1741 cgtccctgcg catcaccttc ggtcgcatga ccactgaaga agaagtgcaa tttgccgccg
     1801 aactgattaa atccaaaatc ggcaaactgc gcgaactgtc gccgttgtgg gaaatgttca
     1861 aagacgggat tgatttgaac tcgattgaat gggcggcgca ttaaagcgta ccaacatgcc
     1921 atccgaacct tcagacggca ttccaaaaac aaagcaatca agagaaaaat atgaacgaac
     1981 aagatttaga tttggacaac ctcgacaacc tgcttgacga tttcgacggc gttaccgtgg
     2041 aaggcggcgt cgattcggaa aacgacgacg gctgtgaagg cggagcgtgc aaaatctaac
     2101 tcaggccgtc tgaaaaccgg caaacaaacc acttaaatca tcaaaacatt aaggaaacca
     2161 catcatggca tacagcgata aagtaatcga ccactacgaa aatccccgca acgtcggtac
     2221 tttcgacaaa aacgacgaat ctgtcggcac cggcatggtc ggcgcaccgg cctgcggcga
     2281 cgtgatgcgc ctgcaaatca aagtgaacga tgaaggcatc atcgaagatg cgaaattcaa
     2341 aacttacggc tgcggttccg ccatcgcttc gtccagcctg attaccgagt gggtcaaagg
     2401 caaaagtctg gatgacgcgc tggcaatcaa aaacagcgaa atcgccgaag agttggaatt
     2461 gccgccggta aaaatccact gctccatctt ggctgaagat gcggtaaaag cggccgttgc
     2521 cgactaccgc aaacgtcagg aaaacagata aagcctttca gacggcatcg tcccgcaatg
     2581 ccgtccgaac cacccgccgc ttcaggtccg tccggggcgg tacaacaagg aagaaatatg
     2641 attaccctta ccgagaatgc cgcaaaacac atcaatgact atctcgccaa acgcggcaaa
     2701 ggcttgggcg tacgcttggg tgtgaaaacc agcggctgct cggggatggc gtacaacctt
     2761 gaatttgtcg atgaagccga tggcgacgac ctgattttcg aaggacacgg cgcgcgcatt
     2821 tatatcgatc cgaaaagcct ggtttatctg gacggcacgc aagtcgatta caccaaagaa
     2881 ggtttgcagg aaggtttcaa atttgaaaac cccaatgtca aagactcctg cggctgcggc
     2941 gaaagcttcc acgtttaagg cataaaaacg gcgggacagt atcaaaaccg tcccgccatt
     3001 ttttcgcttc ctgcctgttg tagctgcctt tgcctttcct tttccgttcc accttgtgcc
     3061 ggaacaaatc ggatttcact aaggctttta aagcattgtc gcgtattttg cctttattgt
     3121 gctgcacttt gccgcccata ttcagtcctt tcgtttaaga agctgcagat tataaggcaa
     3181 aaacagtttt ctgccaaaat cttacattta tcattctact atgtcccaat atttcaccct
     3241 cttccggatt gaacccgctt tcgatatcga caccgaaaac ttggaacaaa cctaccgcgc
     3301 cttggccgcc cgtttccatc ccgataaatt cgcttcagct tccgcctttg agcaaaagca
     3361 ggcagtgatg atgtcttcca ccatcaacga tgcctaccgc accttgaaaa accccatcga
     3421 ccgcgccgcc tacctgctga aaacatcggg catcgatgcc gacgcgccgg agcataccgc
     3481 tttcgccccc gaattcctta tgcagcaaat ggaatggcgc gaaacgctga tggaggcacg
     3541 ggcaggcaac gaccttgaat ccttgaaaaa tctcgacaac gaaatccgcg acgaacaaga
     3601 aaaactgttc tgcggtctga aacagtcgtt tgcccgacaa gattacgaca cagccgcaca
     3661 acaagtccgc caaggcaggt ttctcgacaa actccgcaac gaaatttcct cggcattata
     3721 atccgcaccg tgtttcagac ggcgtaaccg ccgcaccgtt ccgcgtcaaa atatgctaaa
     3781 ataagcaaca attttttgcc atacgaaaca ttgaaaccat gaccgacgca accatccgcc
     3841 acgaccacaa attcgccctc gaaaccctgc cggtaagcct tgaagacgaa atgcgcaaaa
     3901 gctatctcga ctacgccatg agcgtcattg tcgggcgcgc gctgccggac gttcgcgacg
     3961 gtctcaagcc ggtacaccgc cgcgtactgt acgcgatgca cgaattgaaa aacaactgga
     4021 atgccgccta caaaaaatcg gcgcgcattg tcggcgacgt catcggtaaa taccaccccc
     4081 acggcgatac cgccgtatac gacaccatcg tccgtatggc gcaaaatttc gctatgcgtt
     4141 atgtgctgat agacggacag ggcaacttcg gatcggtgga cgggcttgcc gccgcagcca
     4201 tgcgctacac cgaaatccgc atggcgaaaa tttcccacga aatgctggca gacattgagg
     4261 aagaaaccgt caatttcggc ccgaactacg acggtagcga acacgagccg cttgtactgc
     4321 cgacccgttt ccccacactg ctcgtcaacg gctcgtccgg catcgccgtc ggcatggcga
     4381 ccaatatccc gccgcacaac ctttccgata ccgtcaatgc ctgcctgcgc ctgctcgatg
     4441 cacccgacac cgaaatcgac gaactgatcg acattatcca agcccccgac ttcccgaccg
     4501 gggcaaccat ctacggcttg agcggcgtgc gcgaaggcta taaaacaggc cgcggccgcg
     4561 tcgttatgcg cggtaagacc catatcgaac ccataggcag aaacggcgaa cgcgaagcca
     4621 tcgttatcga cgaaatcccc tatcaggtca acaaagccaa gctggtcgag aaaatcggcg
     4681 atttggttcg ggaaaaaaca ctggaaggca tttccgagct ccgcgacgaa tccgacaaat
     4741 ctggtatgcg cgtcgttatc gagctgaaac gcaacgaaaa tgccgaagtc gtcttaaacc
     4801 aactctacaa actgactccg ctgcaagaca gtttcggcat caatatggtg gttttggtcg
     4861 acggacaacc gcgcctgttg aacctgaaac agattctctc cgaattcctg cgccaccgcc
     4921 gcgaagtcgt tacccgacgt acgcttttcc ggctgaagaa ggcacgccat gaagggcata
     4981 ttgccgaagg caaagcggtc gcactgtcca atatcgatga aatcatcaag ctcatcaaag
     5041 aatcgcccaa cgcagccgag gccaaagaca aactgcttgc gcacccttgg cgcagcagcc
     5101 tcgttgaaga aatgctgacg cgttccggtc tggatttgga aatgatgcgt ccggaaggat
     5161 tggctgcaaa catcggcttg aaagagcaag gttattacct gagcgagatt caggcagatg
     5221 ctattttacg catgagcctg cgaaacctga ccggcctcga tcaagaagaa attgtcgaaa
     5281 gctacaaaaa cctgatgggt aaaatcatcg actttgtgga tatcctctcc aaacccgaac
     5341 gcattaccca aatcatccgc gacgaactgg aagaaatcaa aaccaactat ggcgacgaac
     5401 gccgcagcga aatcaacccg ttcggtggcg acattgccga tgaagacctg attccgcaac
     5461 gcgaaatggt cgttaccctg acacatggcg gctatatcaa aacccagccg accaccgact
     5521 atcaggcgca gcgtcgcggc gggcgcggca aacaggcggc tgccaccaaa gacgaagact
     5581 ttatcgaaac cctgtttgtt gccaacacgc atgattattt gatgtgcttt accaatttgg
     5641 gcaagtgtca ttggattaag gtttacaaac tgcccgaagg cggacgcaac agccgcggcc
     5701 gtccgattaa caacgtcatc cagttggaag aaggcgaaaa agtcagcgcg attctggcag
     5761 tacgcgagtt ccccgaagac caatacgtct tcttcgccac cgcgcaggga atggtgaaaa
     5821 aagtccaact ttccgccttt aaaaacgtcc gcgcccaagg cattaaagcc atcgcgctca
     5881 aagaaggcga ctacctcgtc ggcgctgcgc aaacaggcgg tgcggacgac atcatgctgt
     5941 tctccaactt aggtaaagcc atccgcttca acgaatactg ggaaaaatcc ggcaacgacg
     6001 aagcggaaga tgccgacatc gaaaccgaaa tttcagacgg catcgaagat gaaaccgccg
     6061 acagcgaaaa cgcactgccg agcggcaaac acggtgttcg cccgtccggt cgcggcagcg
     6121 gcggtttgcg cggtatgcgc ctgcctgccg acggcaaaat cgtcagcctg attaccttcg
     6181 cccctgaaac cgaagaaagc ggtttgcaag ttttaaccgc caccgccaac ggatacggaa
     6241 aacgcacccc gattgccgat tacagccgca aaaacaaagg cgggcaaggc aatattgcca
     6301 ttaacaccgg cgagcgaaac ggcgatttgg tcgccgcaac cttggtcggc gaaaccgacg
     6361 atttgatgct gattaccagc ggcggcgtac ttatccgcac caaagtcgaa caaatccgcg
     6421 aaaccggccg cgccgcagca ggcgtgaaac tgattaactt ggacgaaggc gaaaccttgg
     6481 tatcgctgga acgtgttgcc gaagacgaat ccgaactctc cgacgcttct gtaatttcca
     6541 atgtaaccga accggaagtc gagaactgaa aatcatctcc cgatgccgtc tgaagattca
     6601 gacggcattt attttatccc tcatccgtca tccagcttct cacaatatag cggattatag
     6661 tcaattaaaa acaaggggct gtcctagata actagggaaa ttcaaattaa gttagagttg
     6721 cccctatgag aaaaagtcgt ctaagccggt ataaacaaat aaactcattg aactgtttgt
     6781 cgcaggtgta actgcaagaa cgacagcaga gttagtaggc gttaataaaa gtaccgcagc
     6841 ctattatttt catcgtttac gattacttat ttatcaaaac agtccgcatt tggaaatgtt
     6901 tgatggcgaa gtagaagcag atgaaagtta ttttgctgaa cgacaaaacc atatcaatgg
     6961 aattgagaac ttttggaacc gggcaaaacg tcatttacgc aagtttgacg gcattcccaa
     7021 agcgcatttt gag
//
LOCUS       DAXIFS010000094         6981 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.094, whole genome shotgun sequence.
ACCESSION   DAXIFS010000094 DAXIFS010000000
VERSION     DAXIFS010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6981
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.094"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            420..626
                     /locus_tag="ACFOCA_001323"
                     /pseudo
     CDS             420..626
                     /locus_tag="ACFOCA_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311098.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
     gene            626..823
                     /locus_tag="ACFOCA_001324"
                     /pseudo
     CDS             626..823
                     /locus_tag="ACFOCA_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757319.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(1015..2418)
                     /gene="mtrE"
                     /locus_tag="ACFOCA_001325"
     CDS             complement(1015..2418)
                     /gene="mtrE"
                     /locus_tag="ACFOCA_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MtrE"
                     /protein_id="HFC6988039.1"
                     /translation="MDTTLKTTLTSVAAAFALSACTMIPQYEQPKVEVAETFKNDTAD
                     SGIRAVDLGWHDYFADPRLQKLIDIALERNTSLRTAVLNSEIYRKQYMIERNNLLPTL
                     AANANDSRQGSLSGGNVSSSYKVGLGAASYELDLFGRVRSSSEAALQGYFASTANRDA
                     AHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREETYKLSELRYKAGVISAVALRQQE
                     ALIESAKADYAHAARSREQARNALATLINQPIPEDLPAGLPLDKQFFVEKLPAGLSSE
                     VLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGTVGTGSAELGGLFKSGTGVWS
                     FAPSITLPIFTWGTNKANLDVAKLRQQAQIVAYESAVQSAFQDVANALAAREQLDKAY
                     DALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYSAEGAALSAQLTRAENLAD
                     LYKALGGGLKRDTQTDK"
     gene            complement(2473..5676)
                     /gene="mtrD"
                     /locus_tag="ACFOCA_001326"
     CDS             complement(2473..5676)
                     /gene="mtrD"
                     /locus_tag="ACFOCA_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MtrD"
                     /protein_id="HFC6988040.1"
                     /translation="MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTIT
                     LHATYPGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENL
                     AQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNI
                     VPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIG
                     SLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSS
                     TRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEIS
                     IEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLT
                     MFAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISV
                     FVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHEEKKG
                     FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQ
                     GFVMVSVQLPAGATQERTNATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFA
                     ILKDWNERTAPGSDAVAIAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD
                     RNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDINRAAAAAQGISF
                     ADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPL
                     STIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLEW
                     GGQSREEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVT
                     GRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAAL
                     EAARLRFRPIIMTSFAFILGVVPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVP
                     LFYVVVRKFFKETAYEHEMAIRHASEAGITGSNDSQH"
     gene            complement(5688..6926)
                     /gene="mtrC"
                     /locus_tag="ACFOCA_001327"
     CDS             complement(5688..6926)
                     /gene="mtrC"
                     /locus_tag="ACFOCA_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit MtrC"
                     /protein_id="HFC6988041.1"
                     /translation="MAFYAFKAMRAAALAAAVALVLSSCGKGGDAAQGGQPAGREAPA
                     PVVGVVTVHPQTVALTVELPGRLESLRTADVRAQVGGIIQKRLFQEGSYVRAGQPLYQ
                     IDSSTYEANLESARAQLATAQATLAKADADLARYKPLVAAEAVSRQEYDAAVTAKRSA
                     EAGVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEGTLLNAGDTTVLATIRQTNP
                     MYVNVTQSASEVMKLRRQIAEGKLLAADGVIAVGIKFDDGTVYPEKGRLLFADPAVNE
                     STGQITLRAAVPNDQNILMPGLYVRVLMDQVAVDNAFIVPQQAVTRGAKDTVMIVNAQ
                     GGMEPREVTVAQQQGTNWIVTSGLKDGDKVVVEGISIAGITGAKKVTPKEWAPSENQA
                     AAPQSGVQTASEAKTASEAE"
BASE COUNT         1636 a         1954 c         1809 g         1582 t
ORIGIN      
        1 atccactata catcaaacat caaattggac tgaccaatca gggcggattc taatgacacg
       61 ccgttcccgc cgtcaacggc atttacctcg caccgccccc gaaacacaag aaaaaactac
      121 accaaactac aatttttgtt tatacaaata tttgttttga caggatttaa acgaaagctc
      181 cgattcaaat ctgccgaacc gcccaaaaat atatagtgga ttaacaaaaa tcaggacaag
      241 gcgacgaagc cgcagacagt acagatagta cggtaaggcg aggcaacgcc gtactggttt
      301 aaatttaatc cattctattg acctgaatat taaagtttcg caaagtaatg caacgttgct
      361 ttaattggtt tgaccactat tgccgacgat tagaaaaata ttttcggaga tgttcaatta
      421 tggaaacttg ggttcaaaac tacacggcaa tcggcggcag cctgtatctg actgccgccg
      481 ccgcactctt acccatcgtc tttttctttg ccgcgctgac cgtcctgaag ctgaaaggct
      541 atcaggcggg gctttatacg ctgctgattg cgcttgccgt tgccgtattc ggcttcggga
      601 tgccggcggg tatggcggtt tcttccctgc cgccgcagcc gcactgaccc aacgccccta
      661 cgccacgctg gatttgaccg cgcattacaa aatcggcaaa tccacccgca tcggtttgga
      721 ctttgaaaac gtgttcaaca aacgctaccg ccctatgccc gacattcacg tttacggcac
      781 gccgcgcagc ctgaccgcaa ccgtcaaaca tatagtggat taacaaaaat caggacaagg
      841 cgacgaagcc gcagacagta caaatagtac aacttggtgc ttcagcacct tagagaatcg
      901 ttctctttga gctaaggcga gccaacgctg tactggtttt tgttaatcca ctataaagaa
      961 agaaatgccg tctgaaacct tatcgtttca gacggcattt tattgcccga ccggttattt
     1021 gtcggtttgg gtatcccgtt tcaatccgcc gccgagtgcc ttgtacaaat cggcaaggtt
     1081 ttcggcgcgg gtcagttgtg ccgacaaagc cgcaccttcc gccgaatagc tgctgcgttc
     1141 cgcatcgagc aagtcgagcg cgccggatac gccgtgtttg taacgcagac cgaccaaacg
     1201 caacgcttct ttagaggcgc ggctttgttt gcttaaagcg tcataggctt tatccaactg
     1261 ctcgcgcgcc gccaatgcgt ttgccacgtc ttgaaatgcg gattggacgg cggattcata
     1321 ggcaacgatt tgtgcctgtt ggcgcagctt ggctacatca aggttcgcct tgttcgtacc
     1381 ccaggtaaaa atcggcaggg taatagacgg cgcgaacgac caaacgcccg tgccgctttt
     1441 gaacaaccca cccaattcgg cagaacccgt accgacggtt ccggtcaggc ggatggatgg
     1501 gaaaaaggcg gcgcgtgccg caccgatatt ggcgtttgcc tgtttgagcg cgtgttcggc
     1561 agcacggata tcgggacggt cgagcaatac ttcggaactc aaaccggccg gcagtttttc
     1621 aacaaaaaac tgcttgtcca gcggcaaacc ggcaggcagg tcttcgggta tcggttggtt
     1681 aatcaaggtt gccaaggcat tgcgcgcctg ttcgcggctg cgcgcggcat gggcataatc
     1741 ggctttggca gattcgatta gggcttcctg ctgacgtagg gcgacggcgg aaatcacgcc
     1801 tgccttgtaa cgtaattcgg acagcttgta ggtttcctcg cgcgttttca aaacacgttg
     1861 cgccaaagac atcgcttctt cggcgtaacg ttcgttgaaa taggctttgg caacggtggc
     1921 aatcaggctc aaatgtgccg catcgcggtt ggcggtgctg gcgaaatagc cttgcagtgc
     1981 cgcctcgctg ctgctgcgta cacgcccgaa caaatcgagt tcgtaagatg ccgcacccag
     2041 tccgactttg tagctgctgc ttacattgcc gccgctcaag ctgccttggc gcgagtcgtt
     2101 cgcattggcg gcaagcgtgg gcaggaggtt gttgcgctca atcatgtatt gtttgcggta
     2161 gatttcgctg ttcaatacgg cggtacgcaa actggtattg cgctcgagtg cgatgtcgat
     2221 cagcttttgc aggcgcgggt cggcaaaata gtcatgccaa cctaaatcga ccgcacggat
     2281 gccgctgtcg gcggtatcgt ttttgaacgt ttcggcaact tcgactttgg gctgctcgta
     2341 ttggggaatc atggtgcagg cggataatgc gaaggctgct gcaacagaag tcaaggtggt
     2401 tttcaatgta gtatccataa aaaagtcctg atgccgtctg aaaacccgta ggcgttcaga
     2461 cggcatggtt gcttaatgtt ggctgtcgtt cgaaccggtt atgcccgctt ctgatgcatg
     2521 tctgatcgcc atttcatgct cgtatgcagt ttctttgaag aatttgcgca ccaccacata
     2581 gaaaagcgga acaaggaaca cggacaagag cgtgccgatg agcatccccc agaatacggt
     2641 tgtaccaatg gcgcgctggc tggcagaact tgcaccgccg gcaatataca ggggaaccac
     2701 gcccaaaata aaggcgaacg aggtcatgat aatcggacgg aaacgcaggc gggctgcttc
     2761 caaagcggct tcaaccgcgc ttttcccttg cgcttgaagg tctttggcaa actcgataat
     2821 caaaatcgcg tttttcgcac tcaaacccat cacggtaacg aaaccgactt gaaagtagat
     2881 gtcgttggcg aacgagggaa cgctgcccaa cagtccttca aacaggttgc gcccggttac
     2941 gcccgcagcc gcaccgatca aacccaacgg aatcacaagg atgaccgcca gcggaatcga
     3001 ccagctttca taaagcgcgg caagtaccaa aaatacggct gcaaccgcca aaccgtacaa
     3061 aatcagggtt tgcgagccgc cttttgcctc ttcgcgcgac tgtccgcccc actccaggct
     3121 gtaaccgccg cccaattcgt caaccatttt ttgaaccgcc gccatagcct gcccggtgga
     3181 aacgccggtt gcaggcgaag cggacagctt catcgaagga taaccgttga agcgtacgct
     3241 ctgttccgta ccgttttccc aagaaacagt agcaatggtg gaaagcggta cggcgacgcc
     3301 ggatttgttc ggcacggtca ggttcaaaat atcggcaggc tgcatacggg catcctcgtc
     3361 ggcctgcacc atcacgcgtt gcagacggcc ttggttcggg aagtcgctga cataagacga
     3421 actcagcgca cttgccaatg cggtgcggat gtcggcaaac gaaatgcctt gcgccgccgc
     3481 ggcggcacgg ttgatgtcga ttttcaactg cggcgagtct tccaaaccgc cggcacggac
     3541 ggtgctgggg tcaaacaaac cgctggcacg cattttctga atcaactcgt tgcgcttcgc
     3601 cagcaatgcg gtatggccgg tattgttgcg gtcttgcagg ttgatgctca gacccgaacc
     3661 gttgcccaac tccagaatcg gaggcgggac gacggcgatg ccaaaaccgt ctttaagcgt
     3721 ccccatcatc atacccgtca gcttgccggc aatcgcaacg gcatcgctgc cgggcgcggt
     3781 acgctcgttc caatctttca atatggcaaa acccatcgcc atattctgac cgctgcccga
     3841 aaagctgaag ccggaaacgg taatgatgtt ttctatttca ggaatgcttt tcgccagttg
     3901 ggtaacttgc gccaaagtcg cattggtgcg ctcttgggtc gctcctgcag gcagttgcac
     3961 gctgaccatg acgaagcctt ggtcttcggt cggcaggaat gaagtcggca gacgcataaa
     4021 caggaacacg cccacaaccg ccaagccgat atagacaacc atcatgcgga aagtcttacg
     4081 cagcactttg gcaacccggc cttcgtaacc gtgcgtccaa ctgttgaatt tcttgttaaa
     4141 ccagccgaag aaaccttttt tctcttcgtg atgccctttc gggattgtct tcaacattgt
     4201 ggcacacaaa gcaggggtaa gggtcagcgc aaggaaggcg gagaatgcga ttgatgacgc
     4261 catcgtcagg gcaaactgtt tgtaaatatt gcccgtcgcc ccgctgaaca tcgccaacgg
     4321 tacgaacacg gaaatcagaa cggcggtaat accgatgacc gcgcccgaaa tctgacccat
     4381 cgcttttttg gtcgcttctt tgggcggcaa gccttcaccc gccataatgc gctcgacgtt
     4441 ttcaaccacc acaatcgcgt catcgaccac gatgccgatg accaaaacca tcgcaaacat
     4501 ggtcagtacg ttaatcgaca tgcccatata agagatgaag gcgaaaccgc ccaacagcga
     4561 aatcggtacg acgatggtcg gaatcagcgt ataacggatg ttttgcagga agagatacat
     4621 tacgacaaac accagcacca tcgcttcgat taaagtatga atcacttttt caatcgaaat
     4681 ttcgacgaat ttggaagtat cgtaaggggt tttccagctc ataccctgag gaaagtattt
     4741 ttccaacgtc gccatgcgtt ctttaaccgc ctttgccgtc gccatcgcat tgccgctgtt
     4801 ggacagcatc accgccatac cggtggtatt tacaccgttc agacgggttg aggaagaata
     4861 gtcttccata cccagtccga cccttgccac atccttcagg taaacattag aaccgtcggt
     4921 attggcgcgg aggatgacgt tgccgaattc ttctgccgta cccaactgcc cttgcgccgt
     4981 tacggtagcc gtaaccgtct gtccgcgaac ggcgggaagc gaaccgatag aacccgctga
     5041 aatctggacg ttctgggcgg acagcgcact gccgatatcg gcaaacgaca aattgtagtt
     5101 ttgcagtttc ttaggatcaa cccaaatccg catcgcgcgt tgcgcgccga acagacgtac
     5161 ctgccccacg ccttcgatac gctgcaactc gggaacgata ttacgctgcg cgtagtcgtt
     5221 catctcttcg gttgactgca catccgacga aagcatcaca atcatcagga aattggaacg
     5281 cgccttggat acggttacgc cgtattgctg gacggttgcc ggcagcgtgc tcaatacttc
     5341 ggaaagcttg ttctgcactt ccacctgcgc cagattctcg tcggtatcgg gcgtaaaggt
     5401 caggctcacg ctgccgctgc cgctcgaatc ggcggaagtg gacatataat ccaaaccttc
     5461 cacgccgttc atattccgct cgatcacgga aagcacgctg tcttccatta cctgcgcgga
     5521 cgcacccgga taagtggcgt gcaaagtaat ggtcggggcg gcgacagacg gatattgcga
     5581 aacaggcagg cttttgatgc cgaaaatacc cgccgcaata atgaaaatcg aaataaccca
     5641 cgcaaaaata gggcggtcga taaaaaattt agccatcgat gccttcctta ttccgcttca
     5701 gaagcagttt tggcttcaga tgccgtctga acgccggatt gaggcgcggc ggcttggttt
     5761 tcagacggcg cccattcttt gggcgttacc tttttcgcac ccgttatacc agcgatactg
     5821 atgccttcca caaccacctt gtccccgtcc ttcagacccg acgtaacaat ccaattcgta
     5881 ccctgctgtt gcgcgaccgt tacctcgcgg ggttccatac cgccttgggc attcacaatc
     5941 atcacggtat ctttcgcacc gcgcgttact gcctgctgtg gaacgatgaa tgcattatcc
     6001 accgccactt ggtccatcag cacgcgcaca tacaggccgg gcatcaggat attctgatcg
     6061 ttcggtacgg cggcgcgcag ggtaatctga ccggtcgatt cgttgacggc cggatcggca
     6121 aacagcaggc ggcctttttc agggtaaact gtgccgtcgt caaatttgat gccgaccgca
     6181 atcacaccat ccgccgccag cagtttgcct tcggctatct gacggcgcag tttcatcact
     6241 tcggatgcag actgggtaac gttcacatac atcggattgg tttggcggat ggttgccagc
     6301 acggtcgtat cgcccgcatt caacagcgta ccttcggaaa ctttggactg accgataaag
     6361 ccggaaatcg gcgcggtaat gcgcgaacgg ttcagattaa tgccggcaga tttgattgcc
     6421 gcctgtgctg ctttgacacc tgcctcggca gaacgtttcg ccgttaccgc agcatcgtat
     6481 tcctgccggc tgacggcttc ggcggcaacc aaaggcttgt atcgcgccaa atccgcatcc
     6541 gctttggcaa gcgttgcctg agccgttgcc agttgcgcgc gcgcgctttc cagatttgct
     6601 tcataagtgg aactgtcgat ctgatacagc ggctgtccgg cacggacata actgccttct
     6661 tggaacaggc gtttttggat aatgccgcca acttgcgcac ggacatcggc ggtacgcagc
     6721 gattccaaac gtcccggcaa ctcgacggtc aacgcaacgg tttgcggatg gacggttacg
     6781 acaccgacga cgggagccgg tgcttcccga cccgcaggct gcccgccctg cgccgcgtct
     6841 ccgcctttac cgcaagacga cagtaccaat gcaacggcgg cagccaacgc ggccgcacgc
     6901 atcgccttaa aagcataaaa agccattatt tatcctatct gtctggtttg atgtaaaggg
     6961 ttttgccaat caacaggcat t
//
LOCUS       DAXIFS010000095         6949 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.095, whole genome shotgun sequence.
ACCESSION   DAXIFS010000095 DAXIFS010000000
VERSION     DAXIFS010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6949
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.095"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(132..335)
                     /locus_tag="ACFOCA_001328"
     CDS             complement(132..335)
                     /locus_tag="ACFOCA_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988042.1"
                     /translation="MLSLEIQQEGFTIGGGLVLGGCAGAHLARKEPLILTGKTGAGAS
                     AIANASIGYQWTVNLSEPKEGAK"
     gene            complement(899..1834)
                     /locus_tag="ACFOCA_001329"
     CDS             complement(899..1834)
                     /locus_tag="ACFOCA_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 49 family protein"
                     /protein_id="HFC6988043.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCPESIDYVDERKGVP
                     LAAMKYILMYTEAAASHAYLFEHDLKKFKQYAYVAGKLGILQSVDDEDPEPFFFPCDM
                     LNIQDPMFLMLMSDSPQLREFLVRNIDNIANDTEAFVNRYDLNRHMIYNTLLMVEGKQ
                     LDRLKQRSEKVLAHPTPSKWLQKRLYDYRFFLAFAEQDAEAMKAALEPLFDKKTARMA
                     AKETLSYFDFYLQPQIVTYAKIASMHGFDLGIDQEIAPRDLIVYDPLPADEYQDIFDF
                     MKQYDLSYPYEYLQDWIDYYTFKTDKLVFGNAKRE"
     gene            complement(1837..2457)
                     /locus_tag="ACFOCA_001330"
     CDS             complement(1837..2457)
                     /locus_tag="ACFOCA_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988044.1"
                     /translation="MLGVVPGIGESIQAYKVAKAAKNLQGMKKALDKAATVATAQGYV
                     SKTKIKIGQIELRVTAATDKQLLKAIGEGRDTTGKMTEQLFDSLAKQNGFRVLSGGKY
                     GGNNGFDHVWQAADGSVVLIVESKQIRNGTVQLNPNGAGGYTQMSREWIKQVVKSLPD
                     GSPAKAVVLKANQNGKLKTAIAGVDRQTGKAVILSVKVPSKTNIRR"
     gene            complement(2635..2913)
                     /locus_tag="ACFOCA_001331"
                     /pseudo
     CDS             complement(2635..2913)
                     /locus_tag="ACFOCA_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
     gene            complement(3009..3281)
                     /locus_tag="ACFOCA_001332"
     CDS             complement(3009..3281)
                     /locus_tag="ACFOCA_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988045.1"
                     /translation="MNKRMKMCPACQQGYLYHSKPKYLHDEIILCDECDAVWLKGMNI
                     FYGEYEKDFYSYVPFMESQGITSECIWEGDLFDHPYYEDENSNDMD"
     gene            complement(3469..3957)
                     /locus_tag="ACFOCA_001333"
     CDS             complement(3469..3957)
                     /locus_tag="ACFOCA_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988046.1"
                     /translation="MKKDIFYCEQWSYGYKRLHKPFSEKQAEEKHIKGELYSAVIGSA
                     TQPEYVITLREEVGFFSVDFFDKFGRDYLTHQFQKYSNSNYYFLSMAVWRDYITLDSH
                     DLAEGYTYFFNENTDDCYVLKEDFINNERYEKTELYSQKDKVILFPKFGEYDLVLNPD
                     II"
     gene            complement(3954..6455)
                     /locus_tag="ACFOCA_001334"
     CDS             complement(3954..6455)
                     /locus_tag="ACFOCA_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6988047.1"
                     /translation="MLKTPPTLAAELSGKTGVSISAPYANENSRIILSAADIAAENGK
                     IKLQSYGDQSYYAGQGELYTLERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATVFDAPKGSINIEAGRKLTLYAVEELNYDKLDSHKKRKFLGITYD
                     KVHDTSTQQMQTALPSRVVAESANLQSGWDTKLQGTQFETTLGGAVIRAGVGDQARAD
                     AKIILEGIKSSIHTETVSSSKSALWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYI
                     VDIPKGNLKTQIETLTKQPEYAYLKQLQVAKNINWNQVQLAYDKWDYKQEGMTPAAAA
                     VVVIVVTVLTYGALSAPAAAGTAGAAGAGAGGAAAGTAAGTGVAAGTAATTGVAAGTS
                     AAAITTAAGKAALASLASQAAVSLINNKGDINHTLKELGKSSTVRQAATAAVTAGVLQ
                     GISGLNTQAAEAVSKHFHSPAAGKLTANLINSTAAASVHTAINGGSLKDNLGDAALGA
                     IVSTVHGEVASKIKFNLSEDYIAHKIAHAIAGCAAAVANKGKCRDGAIGAAVGEMVGE
                     TLLDGRDVGKLSPQERQKVIAYSQIIAGSAVALVKGDVNTAANAATVAVENNSLLARR
                     RVNIRWTPRQELEHEYAILEIQAITNQIRRLDPKFNGIAIMRNPREPWTRHDVQTYRQ
                     YYNQLRESRGIPVLPIYRMRINNGNEFNRIMSSKYPYNELYVANPKSVTGHFRVDSYN
                     PATREIISRKFTQFSQIQESTGIGYIKEAVRKYSPGAVISNVPSTPASLRGRKLTGKL
                     ILEVPAQVNPIPQSVLRAAQEENVIIRDTTGRIYK"
     gene            complement(6705..>6949)
                     /locus_tag="ACFOCA_001335"
     CDS             complement(6705..>6949)
                     /locus_tag="ACFOCA_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988048.1"
                     /translation="PEDSTFIFTAWAIYLLENNCLNERGKDNFFIAEMKKCYQQTNLD
                     RIKSIYSSSDYHIFAKDVNKIQQTFKLNLANIMQQE"
BASE COUNT         1705 a         1576 c         1479 g         2189 t
ORIGIN      
        1 aagtagaaaa tcaaaaaaac cattaattaa tttttcttct ttaaatattt tatatgatat
       61 tataaaatta aataacattg cgaaaacata tgaaatcatc aaaataccaa atatatagtg
      121 ggaatgcatt attatttagc tccttctttt ggctctgaca aattgacagt ccattgatat
      181 ccaatgcttg catttgcaat tgctgacgca cctgcccctg ttttccctgt tagtatcaat
      241 ggttcttttc ttgcaagatg tgcacctgca caaccaccta atactaaacc accacctatt
      301 gtaaatcctt cctgttgtat ctctaatgat aacattttct tcttgtgccg cccttaatac
      361 agattgtgga attggattga cctgagcagg aacttctaaa ataagttttc cttcaagctg
      421 tcttcctctt agcagattag gtgtacttgg aacattggaa atgacaaagt gagtgcgcaa
      481 agccacctga aggcgatgtg tttgaacctg ttgaaagcgg ccaacaggct aaatgcgccc
      541 gctgccgcct aaaaggcagc ccggatgcct gattatcggg tgtccgagga ggattaaggg
      601 ggtatttggg taaaattagg aggtatttgg tacgaaaaca gccgaaatcc tgtgtttggg
      661 tttcggatgt cggggaaggg cttttttgca aaggtctcaa ctcatgttat tgcaaagatc
      721 tcatgccttg ttttgccagc aggttgagtt cttctccggc aatcagcgtg gtaaagcccc
      781 gccacaacac agatctatgt actgtggaag ggcttcaatt tatagctttc aaaaatcttt
      841 cagctttaag acggcctaaa gttgtaatct ataaaacagg agctcagagt tttacggctc
      901 actctcgctt cgcgttacca aataccagct tatcggtttt gaacgtatag taatctatcc
      961 aatcctgcag atattcatac gggtaagaca agtcatactg tttcataaaa tcgaagatgt
     1021 cttgatattc gtctgccggc agcggatcgt aaacaatcaa atccctcggt gcgatttctt
     1081 gatctatgcc caaatcgaaa ccgtgcatgg atgcgatttt ggcgtaggta acgatttgcg
     1141 gctgcaggta gaaatcgaaa taggacaatg tttctttggc agccatacgc gcggtttttt
     1201 tatcgaaaag cggctctaag gcggccttca tcgcctcggc atcctgttcg gcgaaagcga
     1261 ggaagaagcg gtaatcgtac aaccgctttt gcagccattt gctaggggtg ggatgcgcca
     1321 agactttctc gctacgttgt ttcaaccgat caagctgctt accctccacc atcagcagag
     1381 tattgtaaat catatgacgg ttgaggtcgt atcggtttac gaaggcttct gtatcgttgg
     1441 cgatgttgtc gatattgcgc accaaaaact cgcgcagctg cgggctgtcg ctcatcagca
     1501 tcagaaacat cggatcttga atgttgagca tgtcgcaggg aaagaagaag ggttcggggt
     1561 cttcatcatc tacactctgc aaaataccca actttcctgc aacataagca tattgcttga
     1621 atttcttaag atcatgttca aatagatagg catgggaagc cgcagcttca gtgtacatta
     1681 aaatgtattt catcgctgca agcggaacgc cttttctttc atctacataa tctatagatt
     1741 cggggcaacc gctattgaaa ttagcagtat tgcctatgat tacattagta atatgttcat
     1801 accatttttg ggtggtcatc atattgtgcc ccattgttat ctccttatat tggttttaga
     1861 aggaactttg acagaaagaa taacggcctt acctgtttga cgatcaacgc ctgctattgc
     1921 cgtttttaat ttgccgttct gatttgcttt taagacaact gccttagcag gactaccatc
     1981 aggtaaactt tttacaactt gtttaatcca ttcacgactc atctgcgtat atccacccgc
     2041 accattcgga ttcagctgta ccgtaccgtt cctaatctgc ttactttcta caatcaaaac
     2101 aacactacca tcggcagcct gccatacatg atcaaaaccg ttatttccgc cgtatttgcc
     2161 gcccgaaagc actctgaagc cattttgttt agctaaagag tcaaataact gctcggtcat
     2221 tttacctgtc gtgtcccttc cttcgccaat agctttcagc aattgtttgt cagttgctgc
     2281 agtaaccctt aattcaattt gaccgatttt gattttggtt ttactgacat agccctgtgc
     2341 agtggcaacg gttgctgcct tgtccaaggc ttttttcatg ccttgtaaat tttttgccgc
     2401 tttcgctact ttataggcct gtatcgattc accgataccc ggaaccacac ccagcaaagc
     2461 aaacaggtga tcggcagcgg tctgtgcttg tacaaaactc tgtatatcac cgataattgg
     2521 aataaatcct gtctgaagaa gcaaaacttc tcgatattct tcaggatttt cacgtatcca
     2581 tttttgttgt tccttttgaa attcatcaca ctttgcacca acgcatctag gatacaaagt
     2641 attattctcc accgctatct gtgccgcatt cgccgctgta ttcacatccc cgcctacaac
     2701 ggcagacgca gtgccggcaa ccagttttga ataggcagta atcttcgctt tagatttttt
     2761 gatttcggtc gcactcatac gactgaaatc agtattctta accaaagcct caccaacaat
     2821 ctcaccgact gcagcgccta tcgcgccatc ctgacacttg cccttattcg ccgccgctgc
     2881 cgcacagccc gctatggcat gggcaatctt gtgggtggta tatcgctgcc agccctctct
     2941 gttgataatc ttgcgtatga ttacgccgtt tgatggctaa tcgtacctac gcaggcttaa
     3001 aatttccatc aatccatatc atttgagttt tcatcttcat aatatggatg atcaaacaaa
     3061 tctccttccc aaatacattc actcgttata ccttgggatt ccatgaaagg aacataagaa
     3121 taaaaatctt tttcatattc tccataaaat atattcatac ctttgagcca tactgcatcg
     3181 cattcatcac acagaataat ttcatcatga agatatttag gtttcgaatg gtagagatag
     3241 ccttgttgac aagcaggaca cattttcatt ctcttattca tgattactcc atataatcga
     3301 tttatttttg tgggtaagca gtagtgattt gattgctgcc tttagtctgt acaacaatac
     3361 gtatatagca atctgataat ttcctggttt ttatcagctt tatcctcaga ttccaaaccc
     3421 aataataaaa gccgtttgaa atttttttca gacggcctta aaacttaatt aaataatgtc
     3481 cggatttaac accaaatcat attcgccaaa ctttggaaat agaattacct tatctttttg
     3541 ggaatataat tctgtttttt catatcgctc attattaata aaatcctctt tcaaaacata
     3601 gcaatcatcc gtattttcat tgaagaaata agtatatcct tctgctaagt catgagagtc
     3661 taaagttata taatctctcc atacagccat agaaagaaaa taataattcg aattggaata
     3721 tttttgaaat tgatgggtta aataatccct tccaaattta tcgaaaaaat ctaccgaaaa
     3781 aaaacctact tcctctcgca aggtaattac atattcaggt tgtgtcgccg aacctattac
     3841 ggcactatat aattcccctt taatatgttt ttcttcagct tgtttctcag aaaaaggctt
     3901 atgaagtctc ttataaccat aagaccactg ctcacaataa aaaatatctt tcttcatttg
     3961 taaatccttc ctgttgtatc tctaatgata acattttctt cttgtgccgc ccttaataca
     4021 gattgtggaa ttggattgac ctgagcagga acttctaaaa taagttttcc tgtaagtttt
     4081 cttcctctta gcgaagcagg tgtacttgga acattggaaa tgacagcacc agggctatat
     4141 tttctaacag cctccttgat ataaccaatc cccgtacttt cttggatttg agaaaattgg
     4201 gtaaattttc ttgaaataat ttcccttgtt gcaggattat acgaatctac cctaaaatgt
     4261 cccgttaccg atttaggatt ggctacataa agctcattat aagggtattt tgatgacatg
     4321 atacggttaa attcattgcc gttgtttatc ctcattctat aaattgggag aacaggaatg
     4381 cctctggatt cccttaattg attataatat tgcctgtatg tttgtacatc atgtcttgtc
     4441 cacggctctc taggattcct cataatagca atcccgttaa atttcggatc cagccttcgg
     4501 atttgattgg taatggcctg gatttcaaga atggcatatt catgttccaa ttcttgtcgc
     4561 ggagtccaac gtatatttac cctcctgcga gctaaaagac tattattctc cactgccaca
     4621 gtagccgcat tcgccgccgt attcacatcc cctttaacca atgccactgc gctgcctgcg
     4681 ataatctgcg agtaggctat gactttttgg cgttcttggg gtgacagttt gcctacatcg
     4741 cgtccgtcca acagggtttc tcccaccatc tcgccgactg ccgcgccgat tgcgccgtcc
     4801 cgacatttgc ctttatttgc taccgctgcc gcacagcccg ctatggcatg ggcaatcttg
     4861 tgggcaatgt agtcttcgct gagattaaat ttgattttgc tcgctacttc tccgtgtacg
     4921 gtactgacta tcgcacccag tgcggcatcg cccaagttgt cttttaggct gccgccgttg
     4981 atggcggtat ggacacttgc ggcagcggtg ctgttgatca ggttagcggt cagtttgcct
     5041 gctgcgggac tgtgaaaatg tttgctgacg gcttcggctg cttgggtgtt cagcccgctt
     5101 atgccctgca gtacgcctgc ggttacggcg gcggtggcgg cctgtctgac ggtgctgctt
     5161 ttgcccagtt ctttcagggt atggtttatg tctcctttgt tgttgatgag ggaaactgcg
     5221 gcttggctgg cgagactggc cagtgcggct ttgcctgcgg ctgtggtgat agctgcagct
     5281 gatgtgcctg ctgctactcc ggttgtggct gccgttcctg ctgctactcc agttccggct
     5341 gccgttcctg ctgcggctcc tcccgctcct gcgcctgccg cgcccgccgt tccggcggct
     5401 gccggggcgg acagtgcacc gtaggtcaat acggttacga cgataacgac gacagctgct
     5461 gctgcgggtg tcatgccctc ctgtttgtag tcccatttat cgtaagcaag ctgcacctga
     5521 ttccagttga tgtttttcgc aacttgaagt tgtttcaaat aagcatactc gggctgcttg
     5581 gtgagggttt cgatttgggt tttcagattg cctttcggaa tgtcgacaat gtaaccgccg
     5641 ggagcagaga gtacgggcgc aacggggccg gtgaaacttg gcagttgcag ggtttcgatg
     5701 ttgctgccgc gtcctgcctg tttttgccag agggcggatt tgctgctgct tacggtttct
     5761 gtgtggatgc tgcttttgat cccttcgagg ataatcttgg catcggcccg tgcctggtcg
     5821 cctacgcctg cacggatgac cgcgccgccc agcgtggttt caaactgcgt accttgtaac
     5881 ttggtatccc aacctgattg cagattagct gattcagcca ctacacggct tggtaaggca
     5941 gtttgcatct gttgggtaga ggtatcatgt accttatcat aagtaatgcc gagaaatttg
     6001 cgtttcttat gactgtctag tttgtcgtag ttgagctctt ctacggcata gagtgtcaat
     6061 ttccgcccgg cttcgatgtt aatgctgcct ttgggggcat cgaatacggt ggcgtaggcg
     6121 tcgatgctgc caccagattt gatgtcgata ccttgggatg cgctgaggtt tactgcgtcg
     6181 ggcttggcgt ttttgtgttc tttgacttcg gtaatgtgtt tgcggttgta ccatttgccg
     6241 gttttgtagc tgcggcgttc taaggtatag agttcgccct gcccggcgta ataggattgg
     6301 tcgccgtagg attgcagttt gattttgccg ttttctgcgg ctatatcggc ggcactcaaa
     6361 atgatgcggc tgttctcatt ggcatacggt gcgctaatgc tcacaccggt tttacccgaa
     6421 agttctgcag caagcgtagg gggtgtcttc agcacgcacg cgtctgggca gtatataggg
     6481 aatctgaata tttacttgaa taacaaatgc cgtctgaaaa attgtgagct tttcagacgg
     6541 cattgagccg taaatcatgg aacgcgtgcg tgctgaagca cacaccttac gcatggattt
     6601 taggtttcat gcaggctaca gcttgctgcg gcggcggtat aaaagtattt ttagtgattt
     6661 accgtttttg gtaattttgc ccgacggggt taaaaataca gttgctactc ttgctgcatg
     6721 atattggcaa gatttaattt aaatgtttgt tgaatcttgt ttacatcctt agcaaaaata
     6781 tgatagtcac tcgaagaata gatagatttt attctatcca aattagtttg ttgataacat
     6841 tttttcattt ccgcgatgaa aaaattatct tttcctcttt cattgagaca gttattttct
     6901 aacagataga ttgcccatgc tgtaaaaata aatgtactat cttccggat
//
LOCUS       DAXIFS010000096         6946 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.096, whole genome shotgun sequence.
ACCESSION   DAXIFS010000096 DAXIFS010000000
VERSION     DAXIFS010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6946
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.096"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..99
                     /locus_tag="ACFOCA_001336"
                     /pseudo
     CDS             1..99
                     /locus_tag="ACFOCA_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(120..1034)
                     /locus_tag="ACFOCA_001337"
     CDS             complement(120..1034)
                     /locus_tag="ACFOCA_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6988049.1"
                     /translation="MDAVQLKSFVAVAHEGNLTQAAKRLFLSQPAVSAQIKALEEYVG
                     TPLFRRTGKGMVLTRAGEILLPEAESLLQYKHKLEYFAKTLAGDYSEETSLGIIHPID
                     SAKLVALTDNIGQTAPKTRLHIQYGMSGEILSRIQHKTLHGGFILGNAAQRGIRSVFL
                     QNLTYALICPQSQYPHLTRSLPQSLQECVWIEMSGVSGSRKHLHQFWRSNRLSPKKQI
                     LCDYPQTIIDLVAGGIGVAMVPGNKAEAAAKEGAGVAIIESCRHSMPLNFIYAEEYED
                     NPHVSLLLECIEKVWGVQAVQPPVVSDN"
     gene            1290..2759
                     /locus_tag="ACFOCA_001338"
     CDS             1290..2759
                     /locus_tag="ACFOCA_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3360 family protein"
                     /protein_id="HFC6988050.1"
                     /translation="MEKHNGTYRDLHRPASEFATRDEYLEHELQIMQPKRWRPNLPFR
                     DYRFEWEDLIPAMAGTIGKVVMVGAVAAAFAAPLGLPDSFVLENVRYELLIAAAFILL
                     VSGFFLPGANLPGTHGPLIPMIPIVVSAGGHPLAFGISIAVLGLLMALFRGGSIMAKL
                     TSNGVCGGLLLYLGFIGTTGQVKKLFSWAGGFNMPYIAFTVIIVTIVMYALLEHWKKR
                     WLAVPLGCLIAGVVAFALGAPFEFHTAPGLPPMSPAYWWGENSGWHLGLPTAESFLVV
                     FPFAVLAVAMWSPDFLGHQVFQKISYPEKTDKVLMNIDDTMTSCSVRQAVGSILGGAN
                     FTSSWGTYIVPASIAKRPIPGGAVLTAVLCIIAGLWGYPMDLAIWQPVLSVALVVGVY
                     LPLLEAGMEMTRKGKTTQSAAIVVFSSALVNPVFGWALTMLLDNLGLIGCKERSAQLG
                     FAGRVLIPAVGFLILCVAMGAVGMLPGIPPFLEHFKSLG"
     gene            3011..3382
                     /locus_tag="ACFOCA_001339"
     CDS             3011..3382
                     /locus_tag="ACFOCA_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988051.1"
                     /translation="MNKTLSILPAVILLGGCAVGGGNTFGSLDGGTGMGGSIVKMAVE
                     SQCRAELDRRSEWRLTALAMSAEKQAEWENKICACVAQEAPERMTGNDVMQMLDPSTR
                     NQALAALTAKTVSACFKHLYR"
     gene            3455..4864
                     /gene="thrC"
                     /locus_tag="ACFOCA_001340"
     CDS             3455..4864
                     /gene="thrC"
                     /locus_tag="ACFOCA_001340"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFC6988052.1"
                     /translation="MKYISTRGETAHKPFSEVLLMGLAPDGGLMLPEHYPQIGRETLD
                     KWRGLAYPELAFEIMRLFVTDIPEDDLRDILNRTYTEAAFGTKEITPVRTLSDGIKIQ
                     ALSNGPTLAFKDMAMQFLGNAFEYVLNKEGKKLNILGATSGDTGSAAEYALRGKKGVN
                     VFMLSPDGKMSAFQRAQMYSLQDGNIHNIAVKGMFDDCQDIVKTVQNDAAFKEKYHIG
                     TVNSINWGRIVAQVVYYFAGYFKATQSNDEQVSFCVPSGNFGNVCAGHIAKQMGLPVR
                     RLIVATNENDVLDEFFKTGAYRPRNSAHTYVTSSPSMDISKASNFERFVFDLMDRDPQ
                     EINTLWAEVAAGKGFDLRFALDKVGGKYGFTSGKSTHADRLATIKQVYGQDQELIDPH
                     TADGVKVAREVREEGETVVCLETALAAKFDATIREAVGDVAIPRPAALEGLETLPQRV
                     QTVPNSADAVKGIIEQTLA"
     gene            4910..5704
                     /locus_tag="ACFOCA_001341"
     CDS             4910..5704
                     /locus_tag="ACFOCA_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988053.1"
                     /translation="MTLPMQETRFSILLDELAAKQKAAIAPHLLADGSKVWIRKAGRH
                     NARWRYALLGMVARYLKLGVLKPVPSLGGEPAIATESKRLYELRAAGIAVPELLAVRK
                     NALMFGNLEGIPLDTQIRQEAEAGKADAWLAGLEAIARVHKKQQFLSQAFARNMMSDG
                     KNISFLDFEDDPSEVLTIAQCQARDWLCYIHSTALILKNGGLLEAAAEKWGGVLSDQP
                     AEIQKLIAATVKPILPIRRLEHPRWGRDALRLAASISLISLADMPP"
     gene            5892..6668
                     /locus_tag="ACFOCA_001342"
     CDS             5892..6668
                     /locus_tag="ACFOCA_001342"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6988054.1"
                     /translation="MAAFNTQKVLSVHHWTDAYFTFTCTRDESLRFENGQFVMVGLMV
                     DGKPLMRAYSVASANWEEHLEFFSIKVQDGPLTSRLQHLKVGDDVLISKKPTGTLVAG
                     DLNPGKHLYLLSTGTGIAPFLSITKDPEIYEQFEKIILVHGVRYKKDLAYYDRFTKEL
                     PEHEYLGDLVKEKLIYYPIVSREDFEHHGRLTDLMVSGKLFEDIGLPKINPQDDRAML
                     CGSPAMLKDTCKVLDDFGLTVSPKTGVRGDYLIERAFVDQ"
BASE COUNT         1643 a         1752 c         1888 g         1663 t
ORIGIN      
        1 ggcatttcca aagggcattt taagccgtat ttgagagaat gcggatggcg ttttcagtgt
       61 tttcagcgtg ataaaattca aatttctatt ttaaaacaat cagcaaagca ggatttattt
      121 cagttgtccg agacaacggg cggctgcacc gcctgcactc cccatacttt ttcaatgcac
      181 tcgagcagga gtgagacgtg gggattatcc tcgtattctt ccgcataaat gaaattgagc
      241 ggcatactgt ggcggcacga ttcgataata gccacgcccg cgccttcttt tgccgccgct
      301 tcggctttgt ttcccggcac cattgccaca cctataccgc ctgcaaccaa atcgataatg
      361 gtttgggggt agtcgcacaa gatctgtttt ttgggtgaga gccggttgct gcgccaaaac
      421 tggtgcaggt gcttcctact tccggacacg cccgacattt ctatccatac gcattcttgc
      481 aggctctgcg gaagggagcg ggtcagatgg ggatattggc tttgcgggca aatcagcgcg
      541 taggtcaggt tttgcaggaa tacgctgcgg atgccgcgtt gggcggcgtt gccgagtata
      601 aagccgccgt gcagggtttt gtgttggatg cgcgagagga tttcgccgct cattccgtat
      661 tggatgtgca ggcgcgtttt gggggctgtt tgaccgatat tgtccgtcag cgcgacgagc
      721 tttgccgaat cgatggggtg gataatgccc aaactggtct cttccgaata atcgcctgcc
      781 agcgttttgg caaaatactc caacttgtgt ttgtattgca gcagggattc cgcttcgggc
      841 aacagtattt cgcccgcccg cgtcaatacc atgcctttcc ccgtgcgcct gaacagcggc
      901 gtgccgacat attcttcaag ggctttaatt tgggcggaaa cggcaggctg ggaaaggaaa
      961 agtcgtttgg cggcttgggt aaggttgccc tcgtgcgcga cggcgacaaa tgattttaat
     1021 tgtacggcat ccatatatcc ctccttgtgc ggatgttttc tatatttgtg caatcgaaat
     1081 cttttaggcg gattgttgct gaaaattaac tttttaatca agtggtttgt aaattgtatc
     1141 aattttccgg atgatggtta ttaaaaaaaa agattggttt tattgcctgt ttgggcttta
     1201 aatggggtta cggcttccga acgcagcccg tatcaaaaag aaaagtcatg cgcccctttt
     1261 acgaggcgcg atatataagg aggaaggtta tggaaaaaca taatgggact tatcgggatt
     1321 tgcaccgtcc ggcttcggaa tttgcgacgc gggacgaata tttggaacat gaattgcaga
     1381 ttatgcaacc aaaacgctgg cggcccaacc tgccctttcg cgattaccgc ttcgagtggg
     1441 aggatttgat tcctgcgatg gcgggaacga ttggaaaagt ggtgatggtg ggggcggtgg
     1501 cggcggcgtt tgccgcacct ttggggctgc ctgacagctt tgtactggaa aatgtgcgct
     1561 atgagctttt aatcgccgcc gcgtttatct tattggtatc gggctttttt ctgcccggcg
     1621 ccaacctgcc cggtacgcac gggccgctga ttccgatgat tcccatcgtt gtgtcggcag
     1681 gcgggcatcc tttggcgttc ggcatttcga ttgcggtttt aggtctgctg atggctttat
     1741 ttcgcggcgg cagtattatg gcgaagctga caagcaacgg cgtatgcggc ggattattac
     1801 tctatttggg ctttatcggc acgacggggc aggtaaaaaa attgttttcg tgggcaggcg
     1861 gttttaatat gccctacatc gcttttaccg tcattattgt aacgattgtg atgtacgctt
     1921 tgttggagca ttggaaaaaa cgctggttag ccgtgccttt gggatgcttg attgccggtg
     1981 tggtggcatt tgcattgggt gcgccgtttg agtttcacac cgcccccggc ctgcctccaa
     2041 tgagtcctgc ttattggtgg ggtgaaaaca gcggctggca tctggggttg ccgacggcag
     2101 aaagtttttt ggttgtcttt ccatttgcgg tattggctgt tgcaatgtgg tcgcccgatt
     2161 ttttaggaca tcaagtgttc caaaaaatca gctatccgga aaaaaccgat aaggtattga
     2221 tgaatataga cgacaccatg acaagttgtt ctgtccgtca agcagtgggt tctattttag
     2281 ggggtgcaaa ttttacctct tcttggggaa cttatatcgt accggcatcg attgccaaac
     2341 gccccattcc gggcggtgcg gttttaacgg cggttttatg tattatcgcc gggttatggg
     2401 gctatccgat ggacttggcg atttggcagc cggtattgag cgtagccttg gtcgtaggcg
     2461 tatacttacc gcttttggaa gcgggcatgg aaatgacgcg caaaggcaaa accacccaat
     2521 ccgccgccat cgtggtgttc tcttccgcct tggtcaatcc ggttttcggc tgggcgttga
     2581 cgatgctgtt ggataatttg ggcttaatcg gctgcaaaga gcgcagtgcg caattaggtt
     2641 tcgccggacg cgtgttgata cccgcagtag gtttcttgat cttgtgtgtg gcgatgggtg
     2701 cggtcgggat gctgcccggt atcccgccgt ttttggaaca cttcaaatct ttgggctagg
     2761 ctgaaatcgg aaatgccgtc tgaaccgctt tcagacggca tttttgcaaa caggcaaaat
     2821 gacggcggcg ggatttttta ttttcccgat tgaagtataa tgttgccggg cttcaaccgg
     2881 atattcaaaa cggtttgttc caacactcgg aacggcgcat aaaacgccgc ccttcgcgtt
     2941 atcccgaacg gggcggctaa tcagattcta tcgccataaa aggcggggtt tcaaccgaaa
     3001 aggaattgag atgaataaaa ccttgtctat tttgccggcg gtaatcttac tcggcggctg
     3061 cgccgtcggc ggcggtaaca cattcggcag cttggacggc ggcacgggta tgggcggcag
     3121 tatcgtcaaa atggcggtcg agagccaatg ccgcgcggaa ttggacaggc gcagcgaatg
     3181 gcgtttgacc gcgctggcga tgagtgccga aaaacaggcg gaatgggaaa acaagatttg
     3241 cgcttgcgtc gcccaagaag cccccgaacg gatgaccggc aacgatgtga tgcagatgct
     3301 ggatccgtcc acgcgcaatc aggcacttgc cgccctgacc gccaaaacgg tttccgcctg
     3361 cttcaaacac ctgtaccgct aaccttcttc agacggcatg aggcagatgc cgtctgaatc
     3421 cgttttcctg caatttcgac agacgagaaa aatcatgaaa tatatcagca cgcgcggcga
     3481 aaccgcacac aaaccgttca gcgaagtttt attgatgggg cttgcccccg acggcggcct
     3541 gatgctgccg gaacattatc cgcaaatcgg gcgcgaaacc ttggacaaat ggcgcggttt
     3601 agcttatccc gaattggcgt ttgaaattat gcgcctgttt gttacggata ttccggagga
     3661 cgatttgcgc gacattctga accgtactta cacggaagcg gcgttcggta ctaaggaaat
     3721 cacccccgtc cgcacgcttt cagacggcat caaaatccaa gccttgtcca acggcccgac
     3781 gctggcgttc aaagatatgg caatgcagtt tttgggcaat gcgtttgaat atgttttaaa
     3841 caaagaaggc aaaaaactca atatcttggg cgcgaccagc ggcgatacgg gttcggctgc
     3901 ggaatatgcc ttgcgcggca aaaagggcgt gaacgtattt atgttgtcgc ccgacggcaa
     3961 aatgagcgcg ttccaacgcg cgcaaatgta cagcctgcaa gacgggaata tccacaatat
     4021 cgccgtgaag ggaatgtttg acgactgtca ggatattgtg aagacggtgc agaacgatgc
     4081 cgcgttcaag gaaaaatacc atatcggtac ggtcaactcg attaactggg gacgcatcgt
     4141 cgcgcaagtg gtttattact ttgcgggcta tttcaaggcg acgcaaagca atgacgagca
     4201 ggtcagcttc tgcgtgccga gcggcaactt cggcaacgtt tgcgcgggac acatcgccaa
     4261 acaaatgggc ctgcctgtcc gccgcctgat tgtcgcgacc aatgaaaacg atgtattgga
     4321 cgagtttttc aaaaccggcg cgtaccgccc gcgcaacagc gcgcatactt atgttacctc
     4381 cagcccgtcg atggacattt ccaaagcgtc caacttcgag cgtttcgtgt tcgacctgat
     4441 ggatcgcgat cctcaggaaa tcaatacgct gtgggcggaa gtagcggcgg gcaagggctt
     4501 tgacctgcga tttgccttgg acaaagtcgg cggcaaatac ggctttactt ccggcaagtc
     4561 cacccacgcc gaccgcctcg ccactatcaa gcaggtttac gggcaagacc aagaactcat
     4621 cgacccgcac actgccgacg gcgtaaaagt cgcccgcgaa gtgcgcgaag aaggtgaaac
     4681 ggtggtttgt ttggaaaccg cgttggcggc gaaattcgat gcgaccatac gcgaagccgt
     4741 cggcgatgtc gccattccgc gccccgccgc gctggaaggt ttggaaacat tgccgcagcg
     4801 cgtgcaaacc gtgccgaaca gtgcggatgc ggtaaaaggc atcatcgaac aaacccttgc
     4861 ctgatgttcc gtacaggggc attccgtccg aacttaagat tgaaagaaaa tgaccttacc
     4921 tatgcaggaa acccgttttt ccatactgct agacgaattg gcggcaaaac agaaggcagc
     4981 catcgccccc cacctgcttg ccgacgggag caaggtatgg atacgcaaag caggcaggca
     5041 caatgcgcga tggcgttacg cgctgctcgg tatggttgcc cgatatttga aactgggggt
     5101 gttgaagccg gttcccagcc tcggcggcga gcctgccatt gcaaccgaat caaaacgcct
     5161 gtacgaattg cgcgcggcgg ggatagccgt tcccgaattg ctcgccgtca ggaaaaatgc
     5221 ccttatgttc ggaaatttgg aaggtatccc gctcgatacg caaatccgcc aagaagccga
     5281 agccggaaag gcggacgctt ggcttgccgg tttggaagcc attgcacgcg tgcataaaaa
     5341 acagcagttc ctcagtcagg cgtttgcacg aaatatgatg tcggacggaa aaaacatcag
     5401 ctttttggat tttgaagacg acccttccga ggtcctgacc atagcgcaat gccaagcccg
     5461 cgattggctc tgctacattc attcgaccgc gctgatattg aaaaacggcg gactgctgga
     5521 agcggctgcg gaaaaatggg gcggcgtatt gtcggatcag cctgccgaaa tacaaaagct
     5581 gattgccgcc accgtcaaac cgatcctccc gatccgcagg ctggaacacc cacgctgggg
     5641 acgggacgca ctcaggctgg cagcctcgat ttccctgatt tcccttgccg atatgccgcc
     5701 ataagccgcc gcccgccccg cgatgccgtc tgaagccctt cagacggcat ataaccaacg
     5761 cgcatcaagc attgtcgcaa ccatccgttt cgtttagaat tttggcttta tcccgaatcg
     5821 ggcagacatt tccactctgc cgcacctccc gaacaagcac tatccatttc ttttactgac
     5881 aggaaaccca aatggcagca ttcaataccc aaaaagtatt gtccgtacac cactggacag
     5941 acgcatattt tacctttacc tgcacccgcg acgaatcgtt gcgctttgaa aacggacagt
     6001 tcgttatggt cggattgatg gtggacggca agccgctgat gcgcgcatac agcgtcgcct
     6061 ccgccaactg ggaagaacac ctcgaatttt tcagcattaa agtccaagac ggtccgctga
     6121 ccagccgcct gcaacacctc aaagtcggcg acgacgtgtt aatcagcaaa aaaccgaccg
     6181 gaactctggt tgccggcgac ctgaatccgg gcaaacacct ttacttgttg agcaccggta
     6241 ccggcatcgc ccctttcttg agcatcacca aagaccccga gatttacgag caatttgaaa
     6301 aaatcatcct cgtacacggc gtgcgctaca aaaaagattt ggcgtactac gaccgcttta
     6361 ccaaagaatt gcccgaacac gaatacctcg gcgacttggt taaagaaaaa ctgatttact
     6421 acccaattgt ttcccgagaa gactttgaac accacggccg cctgaccgac ctgatggtaa
     6481 gcggcaagct gtttgaagac atcggcctgc ccaaaatcaa cccacaagac gaccgcgcca
     6541 tgctgtgcgg cagccccgcg atgctgaaag acacctgcaa agttttggac gatttcggac
     6601 tgaccgtctc tccgaaaaca ggcgtgcgcg gcgattacct gattgagcgc gcatttgtgg
     6661 atcaataagc tgcttgaaaa tgccgtctga acggcatcag cgataaaaaa acccgaatcc
     6721 tgccaatcag gattcggggt ttttatagtg ggtaaaaatt agaaatgcac atttccgtca
     6781 ttccaacaca ggtgggaatc cggacttacc tgtttcatta tcgtttgaaa ataaaagaga
     6841 aaccaaacat atagattccc gcttgcgcgg gaatgacgac ggtgttttgc cgtagccaaa
     6901 gcagaaaaac atccctattg tcatttcatc atgatatgac aatagg
//
LOCUS       DAXIFS010000097         6919 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.097, whole genome shotgun sequence.
ACCESSION   DAXIFS010000097 DAXIFS010000000
VERSION     DAXIFS010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6919
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.097"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            139..792
                     /locus_tag="ACFOCA_001343"
     CDS             139..792
                     /locus_tag="ACFOCA_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFC6988055.1"
                     /translation="MFSVPRSFLPGVFVLAALAACKPQDNSAAQVASSSASASAAENA
                     AKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLT
                     YSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
                     QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL"
     gene            871..1524
                     /gene="hisG"
                     /locus_tag="ACFOCA_001344"
     CDS             871..1524
                     /gene="hisG"
                     /locus_tag="ACFOCA_001344"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFC6988056.1"
                     /translation="MQDNALTIALSKGRIFEETLPLLAAAGIVPTEEPEKSRKLIIGT
                     NHENIRLVIVRATDVPTYVRYGAADFGIAGKDVLIEHGGTGLYRPLDLEIAKCRMMVA
                     VRKGFDYEAASQPGCRLKIATKYPEIAASHFAGKGVHVDIIKLYGSMELAPLVGLSDA
                     IVDLVSTGNTLKANGLEAVEHIVDISSRLVVNKAALKTKYALLEPIIQAFGGAVKAK"
     gene            1628..2527
                     /locus_tag="ACFOCA_001345"
     CDS             1628..2527
                     /locus_tag="ACFOCA_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HFC6988057.1"
                     /translation="MVAKIKKFSDSTLSVLNNGERRFYVYCLTDLKKDKILYIGKGCG
                     NRIFEHEWVASRSQDPVSGEIIDRKLKAISKCKKLGRYIISYHLTEVEALAAESALIH
                     FVKSVLGKKLKNKIAGHGPGGISVEELDRRFGFSSLPLNEINPDGLILAIKIHNAFDL
                     DTDEELDYLFDNQDDANLKSRTLGNWVIGKDVASKVKYVIGVHTGLQNAVVSAYEVDG
                     FETMVEETKNGRKQSRYRFRTTSRSEEVLAKLGLQQKCLPELKFGSGGEKAYIRPKTE
                     TETEQENIQTTPNPKIKKEKTKS"
     gene            2524..3813
                     /gene="hisD"
                     /locus_tag="ACFOCA_001346"
     CDS             2524..3813
                     /gene="hisD"
                     /locus_tag="ACFOCA_001346"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFC6988058.1"
                     /translation="MKKLNTQSPDFQAGLKALLAFETAQNPETERIVADICADVQKRG
                     DAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTAARRVESYHQRQ
                     KMESWSYTDEDGTLLGQQITPLDRVGIYVPGGKAAYPSSVIMNAMPAHVAGVKEIIMV
                     VPTPKGERNDIVLAAAYVAGVTKVFTVGGAQAVAALAYGTETIPQVDKITGPGNAFVA
                     AAKRRVFGVVGIDMVAGPSEILVIADGTTPADWVAMDLFSQAEHDEIAQAILIGTSQA
                     YLDEVEAAMDRLIETMPRRDIIEASLGNRGAMILAKDLDEACEIANYISPEHLELSVE
                     NPQEWAKKIRHAGAIFMGRYTGESLGDYCAGPNHVLPTSRTARFSSPLGTYDFQKRSS
                     LIQVSEQGAQKLGETASVLAHGESLTAHARAAEFRMK"
     gene            3859..4956
                     /gene="hisC"
                     /locus_tag="ACFOCA_001347"
     CDS             3859..4956
                     /gene="hisC"
                     /locus_tag="ACFOCA_001347"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFC6988059.1"
                     /translation="MKSVRSFIRDDIQAMSAYQIADVPPGFAKLDSMESPVHPFAGHE
                     TLLQEWQARLAAAPIHLYPNPSGSGLQEALRSAFDIPDCADIALGNGSDELIQFITML
                     TAKPGAAMLAAEPSFVMYRHNAALYGMDYVGVPLNGDFTLNLPAVLEAVRKHRPALTF
                     IAYPNNPTGVCFTRAEIEAVIEASDGIVVVDEAYGAFNGDSFLPQAGSIPNLIVMRTV
                     SKIGFAGLRIGYAAGCPEVIGELQKILPPYNMNQLSLTTAKLALQHYGIISANIDSLK
                     NERERMFAELGKICRLNTFPSQANFITIRVPDADLLFDTLKQNRILVKKLHGAHPLLE
                     HCLRITVGSPAQNDAVLNIIRQLYCQPTDFL"
     gene            4953..5870
                     /gene="hisB"
                     /locus_tag="ACFOCA_001348"
     CDS             4953..5870
                     /gene="hisB"
                     /locus_tag="ACFOCA_001348"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HFC6988060.1"
                     /translation="MNLTKTQRQLHNFLTLAQEAGSLSKLAKLCGYRTPVALYKLKQR
                     LEKQAEDPDARGIRPSLMAKLEKHTGKPKGWLDRKHRERTVPETAAESTGTAETQIAE
                     TASAAGCRSVTVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDID
                     ISCKGDLHIDDHHTAEDIGITLGQAIQQALGDKKGIRRYGHSYVPLDEALSRVVIDLS
                     GRPGLVYNIEFTRALIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFK
                     AFGRALRMAVEHDPRMAGQTPSTKGTLTA"
     gene            5965..6834
                     /locus_tag="ACFOCA_001349"
     CDS             5965..6834
                     /locus_tag="ACFOCA_001349"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HFC6988061.1"
                     /translation="MSANEYTQIGWIGLGQMGLPMVTRLLDGGIEVGVYNRSPDKTAP
                     ISAKGAKVYGNTAELVRDYPVIFLMVSDYAAVCDILNGVRDGLAGKIIVNMSTISPTE
                     NLAVKALVEAAGGQFAEAPVSGSVGPATNGTLLILFGGSEAVLNPLQKIFSLVGKKTF
                     HFGDVGKGSGAKLVLNSLLGIFGEAYSEAMLMARQFGIDTDTIVEAIGGSAMDSPMFQ
                     TKKSLWANREFPPAFALKHASKDLNLAVKELEQAGNTLPAVETVAASYRKAVEAGYGE
                     QDVSGVYLKLAEH"
BASE COUNT         1808 a         2070 c         1672 g         1369 t
ORIGIN      
        1 agattctgta tgattcggca attcctgccg tgcagacaac gtaaaaaaat actacattaa
       61 atctgccaaa cgcgttaaga tggaaatatt caaattccgt acgaatcagg ttttgctatt
      121 tattcttggg agattgtcat gttttccgta ccgcgttcct ttttgccggg cgttttcgta
      181 cttgccgcgc ttgccgcctg caaacctcaa gacaacagtg cggcgcaagt cgcttcttca
      241 agtgcatccg cgtcggctgc ggaaaatgcg gcaaagccgc aaacgcgcgg tacggatatg
      301 cgtaaggaag acatcggcgg cgatttcacg ctgaccgacg gcgaaggcaa gcctttcagc
      361 ctgagcgatt tgaaaggcaa ggtcgtgatt ctgtctttcg gctttacgca ctgtcccgat
      421 gtctgcccga cagagctttt gacgtacagc gacacgttga agcagttggg cgggcaggct
      481 aaggacgtga aagtggtgtt cgtcagcatc gatccggaac gcgacacgcc tgaaatcatc
      541 ggcaagtatg ccaaacagtt caatccggac tttatcggtc tgacggcaac gggcgaccaa
      601 aacctgccgg tcatcaagca gcaataccgc gtggtttctg ccaaagtcaa tcaaaaagac
      661 gacagcgaaa actatttggt cgaccactct tccggtgcgt atctcatcga caaaaacggt
      721 gaggttgcca ttttctcgcc ttacggaagc gagccggaaa cgattgctgc cgatgtaagg
      781 actctgctct gataaaaccg tatgccgtct gcaccgtcgg cgcctattca gacggcatta
      841 ttgtttcaac cgacaaagga catccacacc atgcaggata atgctttgac aatcgcctta
      901 tccaaggggc gcatttttga ggagacgctg ccgctgcttg ccgctgccgg cattgttccg
      961 actgaagagc ctgaaaaatc gcgcaagctg attatcggga cgaaccatga aaacatccgc
     1021 cttgtcattg tccgcgcaac cgatgtgccg acttatgtcc gctacggcgc ggcggacttc
     1081 ggcattgcgg gcaaagacgt gctgatcgaa cacggcggca cggggcttta ccggcctttg
     1141 gatttggaga ttgccaagtg ccgcatgatg gttgctgtgc gtaaagggtt tgattacgaa
     1201 gcagcttcgc aacccggatg ccgtctgaag attgccacga agtatcctga aatcgcggca
     1261 tctcattttg ccggcaaggg tgtccatgtg gacattatca aactgtacgg ctcgatggaa
     1321 cttgcgccgc tggtcggctt gagcgatgcg attgtggact tggtttcgac gggcaacacc
     1381 ttgaaggcaa acggcttgga agcagtcgaa cacatcgtcg acatttccag ccgcctggtg
     1441 gtcaacaagg ctgctttgaa aacgaaatac gcgctgctgg agccgattat tcaggcgttc
     1501 ggcggcgcag tgaaggcgaa gtaagcatcc atttgaataa agatgcgttt tcagacgacc
     1561 ctatccgttc ccgccgacag gtcgtctgaa aatatcaccg gcagtaaact gtataggaga
     1621 agttaaaatg gttgcaaaaa taaaaaaatt ctcagattca accctttccg ttttgaataa
     1681 cggcgagcgt cggttttatg tctattgtct gaccgacctg aaaaaagaca aaatcctcta
     1741 catcggcaaa ggctgcggta atcgtatctt cgagcatgaa tgggttgcta gtcgttcaca
     1801 agacccagtc tccggcgaga ttatcgatcg gaaactcaaa gccatctcca aatgcaagaa
     1861 actcggtcgc tatatcatca gctatcatct gactgaagtc gaagcactcg ccgccgaatc
     1921 tgccttaatt cattttgtta aatctgtctt gggtaaaaaa ctcaaaaata aaattgccgg
     1981 gcatggtccg ggtggtatta gcgtagaaga actagatcgc cgctttggat tctcttctct
     2041 cccacttaac gagattaacc ccgacgggct gattctcgcc atcaaaatcc acaatgcttt
     2101 cgatttagat actgacgaag aattagacta ccttttcgac aaccaagacg atgccaacct
     2161 caaatcgcgt acgttgggca actgggttat cggtaaagat gttgcttcaa aagtgaaata
     2221 cgttatcggc gttcacaccg gtctgcaaaa cgctgttgtc agtgcatacg aagtggacgg
     2281 ttttgaaaca atggttgagg aaaccaaaaa cggtagaaaa caatcccgtt accgtttccg
     2341 cactacctct cgtagcgaag aggtattagc caaactcggt ctgcaacaaa aatgcctgcc
     2401 cgaattgaag tttggtagcg ggggagaaaa agcgtatatc agacccaaaa cagagacaga
     2461 aactgaacaa gagaatattc agacgacccc caatccaaaa ataaaaaagg aaaaaaccaa
     2521 atcatgaaaa aactcaacac ccaatcgccc gatttccaag ccggactcaa agccctgctg
     2581 gcttttgaaa ccgcgcaaaa ccccgaaacc gaacgcatcg tcgccgacat ttgcgccgac
     2641 gtgcaaaagc gcggcgatgc ggctttgatt gaatacacca acaaattcga tcagacaaac
     2701 gctaaaagca tcgatgattt aatactcacg caagccgatt tgaacgcggc gttcgagcgc
     2761 attccgaacg acgttcagac ggcattgcag accgccgccc gccgtgtcga aagctaccac
     2821 caacgccaaa aaatggaatc gtggagctac accgatgaag acggcacgct gttgggacaa
     2881 cagattaccc cgcttgaccg cgtcggcatt tacgtccccg gcggcaaggc ggcatatccg
     2941 agttccgtca tcatgaacgc catgcccgcc cacgtcgcag gcgtgaaaga aatcatcatg
     3001 gtcgtgccga caccgaaagg cgaacgcaac gacatcgtgc ttgccgccgc atacgtcgcc
     3061 ggcgtaacca aagtcttcac cgtcggcggc gcgcaggcgg ttgccgccct cgcctacggc
     3121 acggaaacca tcccccaagt cgataaaatc accggtccgg gcaacgcctt cgtcgccgcc
     3181 gccaaacgcc gcgtgttcgg cgtggtcggc atcgacatgg tggcggggcc gtctgaaatc
     3241 ctggtcatcg ccgacggcac gacacctgcc gattgggtgg cgatggattt gttcagccag
     3301 gccgaacacg acgaaattgc ccaagccatc ctcatcggca cgtcgcaagc gtatctcgac
     3361 gaagtagaag ccgctatgga ccgcctgatc gaaactatgc cgcgccgcga catcatcgaa
     3421 gcctcgctcg gcaacagggg cgcgatgata ctcgccaaag acttggacga agcctgcgaa
     3481 atcgccaact acatttcccc cgaacacttg gaactgtcag tcgaaaatcc gcaggaatgg
     3541 gcgaaaaaaa tccgccacgc cggtgcgatt ttcatgggac gctacaccgg cgaaagcctc
     3601 ggcgactact gcgccggtcc aaaccatgta ttgcccacca gccgaaccgc ccgcttttcc
     3661 tcgcctttgg ggacatatga tttccaaaaa cgctccagcc tgattcaggt ttcggaacag
     3721 ggcgcgcaaa aattaggcga aaccgccagc gtgctggcac acggcgaaag cctgaccgcc
     3781 cacgcccgcg cggcagagtt ccgtatgaaa taatgccgaa acggcgtaca ggcatattcc
     3841 aaccattaag gaaacacgat gaaatccgtc cgctccttca tccgcgacga catacaagct
     3901 atgtcggcat atcagattgc cgacgttccg cccggctttg ccaaactcga ttcgatggaa
     3961 agtcccgtcc acccttttgc cggacatgaa acgctgttgc aggaatggca ggcacggctt
     4021 gccgccgcgc ccatccatct ttaccccaat ccctccggca gcggtttaca ggaagcatta
     4081 cgttcggcgt tcgacattcc cgactgcgcc gacatcgcgc tgggcaacgg ctcggacgag
     4141 ctgatacagt tcatcacgat gctgaccgcc aaaccgggcg cggcaatgtt ggcagccgaa
     4201 cccagtttcg tcatgtaccg ccacaacgcc gcgctgtacg gcatggatta tgtcggcgtt
     4261 ccactgaacg gagatttcac cctcaacctg cccgccgtcc tcgaagccgt caggaagcac
     4321 cgccctgccc tgacctttat cgcctacccc aacaacccca ccggcgtatg tttcacgcgt
     4381 gccgaaatcg aagccgtcat cgaagcttca gacggcatcg tcgtcgtcga cgaagcctac
     4441 ggcgcattca acggcgacag cttcctgccg caggcgggca gcattcccaa cctcatcgtc
     4501 atgcgtaccg tcagcaaaat cggttttgcc ggactgcgta tcggctatgc ggcaggctgt
     4561 cccgaagtca tcggcgaact gcaaaaaatc ctgccgccct acaatatgaa ccaactgagc
     4621 ctgaccaccg ccaaactcgc cctgcaacac tacggcatca tctctgccaa catcgacagc
     4681 ctgaaaaacg aacgcgaacg gatgttcgcc gaattgggca aaatatgccg tctgaacacc
     4741 tttccaagtc aggcaaactt cattaccata cgcgtacccg atgccgattt gttgtttgac
     4801 acgctcaaac aaaaccgcat cttggttaaa aaactgcatg gcgcgcaccc gcttttggaa
     4861 cactgcctgc gcattaccgt aggcagcccc gcacaaaacg atgccgttct caacatcatt
     4921 cgccaacttt actgccaacc aacggatttc ctatgaattt gactaaaaca caacgccaac
     4981 tgcacaactt tctgaccctc gcccaagaag caggttcgct gtccaagctc gccaaactct
     5041 gcggctaccg tacccccgtc gcactctaca aactcaaaca acgccttgaa aagcaggcag
     5101 aagacccaga tgcacgcggc atccgtccca gcctgatggc aaaactcgaa aaacacaccg
     5161 gcaaacccaa aggctggctc gacagaaaac accgcgaacg cactgtcccc gaaaccgccg
     5221 cagaaagcac cggaactgcc gaaacccaaa ttgccgaaac cgcatctgct gccggctgcc
     5281 gcagcgttac cgtcaaccgc aatacctgcg aaacccaaat caccgtctcc atcaacctcg
     5341 acggcagcgg caaaagcagg ctggataccg gcgtaccctt cctcgaacac atgatcgatc
     5401 aaatcgcccg ccacggcatg attgacatcg acatcagctg caaaggcgac ctgcacatcg
     5461 acgaccacca caccgccgaa gacatcggca tcacactcgg acaagcaatc cagcaggcac
     5521 tcggcgacaa aaaaggcatc cgccgttacg gacattccta cgtcccgctc gacgaagccc
     5581 tcagccgcgt cgtcatcgac ctttccggcc gccccggact cgtgtacaac atcgaattta
     5641 cccgcgcact aatcggacgt ttcgatgtcg atttgtttga agaatttttc cacggcatcg
     5701 tcaaccacag tatgatgacc ctgcacatcg acaacctcag cggcaaaaac gcccaccatc
     5761 aggcggaaac cgtattcaaa gccttcgggc gcgccctgcg tatggcagtc gaacacgacc
     5821 cgcgcatggc aggacagacc ccctcgacca aaggcacgct gaccgcataa aaaaccatac
     5881 cgtctgaaac acccgcaggc ttttcagacg gtatcggaac agataagatt acactacact
     5941 acaaacagaa aaggagtaaa catcatgtcc gcaaacgaat acacacaaat cggctggata
     6001 ggcttagggc aaatgggtct gcctatggta acgcggctct tggacggcgg catcgaagtc
     6061 ggcgtataca accgctcgcc cgacaaaact gcccccatct ccgccaaagg cgcaaaagtt
     6121 tacggcaaca ccgccgaact cgtccgcgac tatcccgtca ttttcctgat ggtttccgac
     6181 tatgccgccg tgtgcgacat cctgaacgga gtccgcgacg gattggccgg caaaatcatc
     6241 gtcaacatga gcaccatctc cccgaccgaa aacctcgccg tcaaagcact tgtcgaagcc
     6301 gcaggcggac agtttgccga agcacccgtt tccggatcgg tcgggcccgc caccaacggc
     6361 acgctgctga ttctgttcgg cggcagcgaa gccgttttaa acccgctgca aaaaatattt
     6421 tccctcgtcg gcaaaaaaac cttccatttc ggcgatgtcg gcaaaggttc gggcgcgaaa
     6481 ctcgtcttga actcgctctt gggcattttc ggcgaagcgt acagcgaagc gatgctgatg
     6541 gcgcggcagt tcggcatcga taccgacacc atcgtcgaag ccatcggcgg ctcggcaatg
     6601 gactcgccca tgttccaaac caaaaaatcc ctgtgggcaa accgcgaatt cccacccgcc
     6661 ttcgccctca aacacgcctc caaagacctc aacctcgccg tcaaagagct tgaacaggca
     6721 ggcaacaccc tgcccgccgt cgaaaccgtt gctgccagct accgcaaagc agtcgaagcc
     6781 ggctacggcg aacaggacgt ttccggcgtt tacctgaaat tggcagaaca ctgattgcct
     6841 tttccaaaca caatgccgtc tgaacatatt tcagacggca tttttatcac cccacgctta
     6901 aaatcagtcc cgattatga
//
LOCUS       DAXIFS010000098         6740 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.098, whole genome shotgun sequence.
ACCESSION   DAXIFS010000098 DAXIFS010000000
VERSION     DAXIFS010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6740
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.098"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            143..709
                     /locus_tag="ACFOCA_001350"
     CDS             143..709
                     /locus_tag="ACFOCA_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HFC6988062.1"
                     /translation="MSLYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAATALVFGT
                     VEALTPLAGWVGGFYAKPFISEWDHWAAFVLLGGLGLKMMHEGLSGEAEDARENKRES
                     WWLTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAIIGMATTVLVAVGLTVGRALGVLF
                     GRRAEFAGGLVLIAIGTWTLLSHLGLIG"
     gene            complement(973..3009)
                     /locus_tag="ACFOCA_001351"
     CDS             complement(973..3009)
                     /locus_tag="ACFOCA_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HFC6988063.1"
                     /translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
                     THTGWANTVEPLTGITERVGRIWGVVSHLNSVADTPELRAVYNELMPEITVFFTEIGQ
                     DIELYNRFKTIKNSPEFDTLSPAQKTKLNHDLRDFVLSGAELPPEQQAELAKLQTEGA
                     QLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSESKTGYKIGLQIPH
                     YLAVIQYADNRELREQIYRAYVTRASELSDDGKFDNTANIDRTLANALQTAKLLGFKN
                     YAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLGLADLQPWDLG
                     YASEKLREAKYAFSETEVKKYFPVGKVLNGLFAQIKKLYGIGFTEKTVPVWHKDVRYF
                     ELQQNGKTIGGVYMDLYAREGKRGGAWMNDYKGRRRFSDGTLQLPTAYLVCNFAPPVG
                     GREARLSHDEILILFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWE
                     YNVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDEGR
                     LKNWQQVLDSVRKKVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAA
                     FEESDDVAATGKRFWQEILAVGGSRSAAESFKAFRGREPSIDALLRHSGFDNAA"
     gene            complement(3097..3969)
                     /locus_tag="ACFOCA_001352"
     CDS             complement(3097..3969)
                     /locus_tag="ACFOCA_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFC6988064.1"
                     /translation="MEIWNRLDTWLGAVPIRAEAVESVAAVAALLLARALLLNIHFKR
                     HPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELI
                     MCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVS
                     FPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQ
                     RHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRV
                     QYRLLNYPAGSETL"
     gene            4239..6629
                     /gene="gyrB"
                     /locus_tag="ACFOCA_001353"
     CDS             4239..6629
                     /gene="gyrB"
                     /locus_tag="ACFOCA_001353"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFC6988065.1"
                     /translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
                     FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
                     HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNV
                     VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
                     FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
                     PQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
                     FSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAR
                     EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
                     GKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
                     IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
                     AKIVSDSRTIEGEELANTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENA
                     DKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
                     TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
                     QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
BASE COUNT         1474 a         1771 c         1987 g         1508 t
ORIGIN      
        1 ccacctacgt tccatccgac gcatccgccc tacggttccg gattcccctg cgaaccgccc
       61 cgcgcacgaa aactgcttta cgcggcgttt ttcgcgtttt gctgttttgc tataatccgc
      121 cctttttaag gacgggtgcg gtatgagtct ttacgctttg ctcttgattg cgctggggat
      181 gtcgatggat gcgtttgccg tcgcgctggc aaagggtgcg gcggtcagga tgcctccgcg
      241 caaaattgca gcaacagcct tggtgttcgg cacggttgaa gcgctcacgc cgctggcagg
      301 ctgggtaggc ggtttttatg ccaagccgtt tatcagcgaa tgggaccatt gggcggcttt
      361 cgtcctgctg ggcgggctgg gtctgaaaat gatgcacgaa gggttgtccg gcgaggcgga
      421 ggacgcgcgg gaaaacaaac gggaaagctg gtggttgacg gttctgactg cttttggaac
      481 cagtattgat tccatgatag tcggggtggg cttggcgttt atggaggtaa acatcgcctt
      541 tgccgccgca atcatcggta tggcgacgac ggtgctggtg gcggtcgggc tgacggtggg
      601 aagggctttg ggcgtattgt tcggcaggcg tgcggaattt gccggaggtt tggtgttgat
      661 tgccatcggt acatggacgc tcttgtcgca cttggggctg atcgggtaag gactgccaaa
      721 aaatgctgtc tgaagcgttg tttgaccgtt tcagacggca ttttttattt tttgggcgta
      781 gggcgaatcc gtaaggtggg atgtagggtg ggcttcagcc caccctacgc ccactgtttt
      841 tgattttttg tttttgcggg aatgacggga ttttggctta ctgtttttgt gaaaatggcg
      901 aaaccgcgca aatgctgatg ccgtctgaaa cactgtttga ttgtttcaga cggcattttt
      961 tgttcacatc gatcaagccg cgttgtcgaa accgctgtgg cgcaagagtg cgtctatgct
     1021 cggttcgcgg ccgcggaagg ctttgaagga ttctgccgcg ctgcgcgatc cgccgacggc
     1081 gaggatttcc tgccaaaagc gtttgcctgt ggcggcgaca tcgtcgcttt cttcaaaggc
     1141 ggcgtatgcg tccgcgctca atacttccgc ccacgcgtag ctgtaatagc ctgcggaata
     1201 gccgcctgcg aagatgtggc cgaagctcaa ggcgaagcgg ttgtattcgg gcggctggat
     1261 gacggcgact tttttgcgca cgctgtctaa aacctgttgc cagtttttca gacggccttc
     1321 gtcgtcttcg ctgtaaatca tcatatcaaa gagggcgaac tccatttgcc ggacgaggaa
     1381 catgccgcgt tggaagtttt tggcggcgag cattttgtcg aagagttctt tcggcagggg
     1441 aacgccggtt tcttcgtggg ctgacatttg tgccaagaca ttgtattccc aaacgaaatt
     1501 ttccataaac tggctgggca gttcgaccgc gtcccattct acgccgttga tgccggatac
     1561 gcccagttcg tccacttggg taagcaggtg gtgcagcccg tgtccggttt cgtggaagag
     1621 gatgaggatt tcgtcgtggc tcaggcgggc ttccctgccg ccgacgggtg gggcgaagtt
     1681 gcagacgagg taggcggtgg gcagttgcag cgtgccgtct gaaaaacggc ggcggccttt
     1741 gtagtcgttc atccacgcgc cgccgcgctt gccttcgcgg gcgtagaggt ccatatagac
     1801 gccgcctatg gttttgccgt tttgttgcaa ttcaaaatag cgcacgtctt tgtgccagac
     1861 ggggacggtt ttttcggtaa atccgatgcc gtagagtttt ttgatttggg cgaacagtcc
     1921 gtttaatact ttgccgacgg ggaagtattt tttgacttcg gtttcgctga acgcgtattt
     1981 ggcttcgcgc agtttttcgc tggcgtagcc caagtcccac ggttgcaaat cggcgaggcc
     2041 gaggctttcg cgggcgaagg ctttgacttc ggcgaggtct ttttcggcgt agggtttggc
     2101 gcggcgggcg aggtcgtgca ggaagtttaa aacttgttcg ggggtgtccg ccattttggt
     2161 tgccagcgac aattcggcgt agtttttgaa gccgagcagt ttggcggttt gcagggcgtt
     2221 tgcgagcgtg cggtcgatgt tggcggtgtt gtcgaatttg ccgtcgtctg acagttcgct
     2281 ggcgcgggta acgtaggcgc ggtagatttg ttcgcgcagt tcgcggttgt cggcgtattg
     2341 gatgacggcg aggtagtgtg gaatctgcaa gccgattttg tagcctgttt tgctttcgct
     2401 ttgcgcggcg gcggcaaaca tggcgagcgc gtcttcggga atgccggcaa gcggtgcggc
     2461 atcgtcaaag taaatgccga acgcgtcggt cgcgtctagg acgttttggg agaatttggc
     2521 ggaaagttgc gcgccttcgg tttgcagttt tgccagttct gcctgctgtt cgggcggcag
     2581 ttccgcgccg ctgaggacga aatcgcgcag atcgtggttg agtttggttt tttgtgcggg
     2641 ggagagggtg tcgaattcgg gggaattttt gatggttttg aagcggttgt acagctcgat
     2701 gtcttgtccg atttcggtga agaagacggt gatttcgggc atcagttcgt tatagacggc
     2761 gcgcagttcg ggcgtgtcgg cgacggagtt gaggtgcgac accacgcccc aaatcctgcc
     2821 gacgcgttcg gtgatgccgg tcaggggttc gacagtgttt gcccagccgg tgtgcgtttg
     2881 ggctttgatg gcggcgattt gttcgcgcgc ttcggcgatg gcggtttgca gggcgggttt
     2941 gatgtcttcg gttttgattt gatcaaaacg gggttcttcg cccaaatgga gcagtgcgtt
     3001 gtcagtcata agatgggttt cctttgcgtg ttgtgcttca gacagcatat cggcaatatg
     3061 ccgtctgaag ccggaaatgg ggtcggtcgg ggaaagttaa agtgtttcgg agccggcggg
     3121 gtaatttaac aggcggtatt gtacgcgcaa aaattcgtcc ataaccgcct gttggatttc
     3181 cagccgcttt gaaacggggg aggcgaagcg gacgatgatg cggtatgcct tgtcatcgta
     3241 cggcacgcgg gtaacgcgcg gtctggcggc gggcgtgata aacagttttt ccgcctgcac
     3301 gttttccaaa tgccgttgga tggcggggat gtagggcgcg cacaagggct cgagtacggc
     3361 tttcagacgg catacggctt catccgaatc caaatggatg gggacgggga tttcgaccgt
     3421 atggatgaca tagtcgccca aaatattgtc gcggcgcacg gggtggctca acaacaggct
     3481 gttggggaaa gaaacggtgg ttcccgcaag ctgtccgacc aaggggttcg gaccgacctg
     3541 catcatcagc gtgttcaaca ggttgatgtc gaccacgcgc ccgcgcaggc cgttgatttc
     3601 gatatagtcg ccgaccgagt attgctgggt ggcagacctt aaaatactgc ccgacagaca
     3661 cataatcagt tccttcgtcg ccacgacgac cgccgccgcc accgcaaaca tcgacaaagc
     3721 cagcgtttgg atttgcgccg accagataaa tgccagcgaa aacagcacca aaagcagcgt
     3781 tatattgcgg ctggcaacca aaaaccgccg cttgctttcg atgccgaaat ccggatgccg
     3841 tttgaagtgg atattcaaca gaagggcgcg cgccagcagc aaagccgcaa ccgccgccac
     3901 ggattcgacc gcctccgcac gtatcgggac ggcaccgagc caagtgtcca acctattcca
     3961 tatttccatt tccgcgcccc tgtccgaaaa gtatagggtg tagattttag tggcaaaaaa
     4021 acgcttttgc cactttacgg gaaaatcccc gacctgatgc cggaggcaaa cgtaccgttt
     4081 catcttttcc cggcggcaca ctgatgcgga taacgctgaa ttaggcggca aaatcggcta
     4141 taatacacaa ttatatatgc cgtcccgccc gctttttcca caaggtgcgg acttgttttg
     4201 gcggcatcgc aaaatctttt caaaatccgg caaaaaatat gactgaacaa aaacacgaag
     4261 aatacggcgc cgacagcatt caggtgctcg aaggcttgga agcggtacgc aaacgccccg
     4321 gcatgtacat cggcgacacg caggacggca gcggcctgca ccatatggtg ttcgaagtat
     4381 tggacaacgc cattgacgaa gcactcgccg gacattgcga caaaatcacg gtaacgatac
     4441 acgccgacca ttccgtcagc gtcgccgaca acgggcgcgg tatgcccacc ggcatccacc
     4501 cgaaagaagg acgctccgcc gccgaagtca tcatgaccgt attgcacgcg ggcggtaaat
     4561 tcgacaacaa cagctacaaa atctccggcg gcctgcacgg cgtgggcgtg tccgtcgtca
     4621 acgcgctgtc cgactgggta acgctgacca tctaccgcga cggcaaagaa cacttcgtcc
     4681 gcttcgtgcg cggcgaaacc gaagagccgc tgaacgttgt cggcgattcc gataaaaaag
     4741 gcacgaccgt gcgcttcctc gccagtacgg aaaccttcgg caacgtcgaa tacagcttcg
     4801 acatccttgc caaacgcatc cgcgaacttt cgttcctgaa caacggcgtg gacatcgaat
     4861 tgaccgacga gcgcgacggc aaacacgaaa gcttcgccct ttccggcggc gtggctggat
     4921 tcgtgcaata catgaaccgc aaaaaaacgc ccttgcacga aaaaatcttc tacgcgttcg
     4981 gcgagaaaga cggcatgagc gtcgaatgcg caatgcaatg gaacgacagc tatcaggaaa
     5041 gcgtgcagtg cttcaccaac aacatccctc agcgcgacgg cggtacgcac ctgaccgcgt
     5101 tgcgccaagt gatgacgcgc accatcaaca gctacatcga agccaacgaa gtcgccaaaa
     5161 aagccaaagt ggaaaccgcc ggcgacgata tgcgcgaagg tttgacctgc gtgttgtccg
     5221 tcaaactgcc cgaccccaaa ttttcgtccc aaaccaaaga caaactggtt tccggcgaaa
     5281 tcggtcccgt cgtcaacgaa gtcatcagcc aagccctgac cgacttcctc gaagaaaacc
     5341 ctgccgaagc caaaatcatc accggcaaaa tcgtcgatgc cgcccgcgcg cgcgaagccg
     5401 cccgcaaagc ccgcgaaatc acccgccgca aaggcgtaat ggacggcttg gggctacccg
     5461 gcaaactcgc cgactgccaa gaaaaagacc ccgcattgtc agaactttat ttggtcgagg
     5521 gcgattctgc aggcggttcc gccatgcagg ggcgcgaccg caaattccaa gcgattttgc
     5581 cgcttaaggg caagattttg aacgtggaaa aggcgcgctt tgaaaaaatg ctcgccagtc
     5641 aggaagtcgc cgctttgatt actgcgttgg gtgcaggtat cggcaaggaa gaattcaatg
     5701 ccgagaagct gcgttaccac cgcatcatca ttatgaccga tgccgatgtg gacggcgcgc
     5761 acatccgcac cctgctttta accttcttct accgccaaat gcccgagctg gtcgaacgcg
     5821 gctacatcta cattgcccag ccgcctttat acaaagccaa atacggcaaa caagaacgat
     5881 atctcaaaga cgaattggaa aaagaccaat ggctgctcgg tttagccttg gaaaaagcca
     5941 aaatcgtttc agacagccgc accatcgaag gcgaagagct tgccaatacc gccaaacaat
     6001 tcctgttggc caaaaccgtc atcgaacagg aaagccgctt cgtagacgaa ctcgtcctgc
     6061 gcgccatgct acacgcgtcg cccattgatt tgacgtcgtc tgaaaacgcc gataaagccg
     6121 ttgccgaact ttccggtctg cttgacgaaa aagaagtcgc cctcgaacgc atcgaaggtc
     6181 atgaaggaca ccgattcatc aaaatcacgc gcaagctgca cggcaacgtc atggtcagct
     6241 acatcgaacc caagttcctc aacagcaaag cctaccaaac cctcacccaa accgccgccg
     6301 cgctcaaagg catggtcggc gagggtgcca agctttacaa aggcgaaaac gggtacgacg
     6361 cggacagctt tgaaaccgct ttggacatct tgatgagcgt tgcccaaaaa ggtatgtcca
     6421 tccaacgata caaaggcttg ggcgagatga accccgaaca gctgtgggaa accacgatgg
     6481 atcccgccgt gcgccgcctg ttgaaagtgc gcatcgaaga cgccatcgcc gccgacgaag
     6541 tgttcgttac gctgatgggc gacgaggtcg agccgcgccg tgcctttatc gaaaacaacg
     6601 cgctgattgc ccaaaatatc gacgcataag tgccgtttta aaaaaggaga cgggcatcgt
     6661 gccgcgtctc cttttggttt gtcaaacgga agccatgccg tctgaaaccg cctttcggag
     6721 caaaaccatg atcagcattt
//
LOCUS       DAXIFS010000099         6721 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.099, whole genome shotgun sequence.
ACCESSION   DAXIFS010000099 DAXIFS010000000
VERSION     DAXIFS010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6721
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.099"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(81..440)
                     /gene="rplT"
                     /locus_tag="ACFOCA_001354"
     CDS             complement(81..440)
                     /gene="rplT"
                     /locus_tag="ACFOCA_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000124858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFC6988066.1"
                     /translation="MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQ
                     YAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFD
                     KAAFAQLVEKAKSALAA"
     gene            complement(453..650)
                     /gene="rpmI"
                     /locus_tag="ACFOCA_001355"
     CDS             complement(453..650)
                     /gene="rpmI"
                     /locus_tag="ACFOCA_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFC6988067.1"
                     /translation="MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQL
                     RGTSMVNDRDLASVAKMLPYA"
     gene            complement(797..1318)
                     /gene="infC"
                     /locus_tag="ACFOCA_001356"
     CDS             complement(797..1318)
                     /gene="infC"
                     /locus_tag="ACFOCA_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFC6988068.1"
                     /translation="MIAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQ
                     DVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQVQIKEIKFRPGTDEGDY
                     QIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKME
                     GRQMVMMIAPKKK"
     gene            complement(1336..3249)
                     /gene="thrS"
                     /locus_tag="ACFOCA_001357"
     CDS             complement(1336..3249)
                     /gene="thrS"
                     /locus_tag="ACFOCA_001357"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFC6988069.1"
                     /translation="MLNITLPDGSVRQYESPVTVAQIAASIGVGLARAAVAGRVNGKL
                     VDACDPIVENSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQERGEEYKLRLI
                     DDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIY
                     GTAWATKDELKAYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQVI
                     EQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKDNMFVTSSEKREYAVKPMNCP
                     GHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQI
                     VSEARAFNELLVRIYKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVE
                     WEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVM
                     LHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNITENQADYCREVAAKLQAAGF
                     RAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRKAEDLGSLDLDDFIA
                     QLQQEITDALVNH"
     gene            complement(3302..3378)
                     /locus_tag="ACFOCA_001358"
     tRNA            complement(3302..3378)
                     /locus_tag="ACFOCA_001358"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3342..3344),aa:Val,seq:gac)
     gene            3557..4672
                     /gene="tgt"
                     /locus_tag="ACFOCA_001359"
     CDS             3557..4672
                     /gene="tgt"
                     /locus_tag="ACFOCA_001359"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFC6988070.1"
                     /translation="MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNP
                     QNLHDIKAQIILGNTYHLWLRPGLEVVEQFGGLHGFIGWDKPILTDSGGFQVFSLSDM
                     RKLTEEGCTFKSPINGDKLFLSPEISMKIQTVLNSDIAMQLDECTPGEATREQAKKSL
                     QMSLRWAERSKKAFEDLKNPNALFGIVQGAMYEDLREESLRGLEQFDFPGLAVGGLSV
                     GEPKPEMYRMLRAVGPILPEHKPHYLMGVGTPEDLVYGVAHGIDMFDCVMPTRNARNG
                     WLFTRFGDLKIKNAKHKLDKRPIDESCTCYACQNFSRAYLHHLHRTGEILGAQLNTIH
                     NLHFYQVIMAEMREAVEQGKFADWQARFHENRARGTD"
     gene            4682..5764
                     /gene="hemH"
                     /locus_tag="ACFOCA_001360"
     CDS             4682..5764
                     /gene="hemH"
                     /locus_tag="ACFOCA_001360"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFC6988071.1"
                     /translation="MPSEAASDGILPLYPTRTIFQKPIMLPFFPEPSLSYTQQNRTAV
                     LLLNLGTPDAPTAQAVRPYLKSFLTDRRVVELPKWLWYPILHGLVLTLRPKKSAHAYE
                     KIWFKEGSPLEVYTARQAAALAKRMPDLIVRHAMTYGNPSVADVLSELKAQGAGRLLV
                     IPMYPQYAASSSGAAVDKVCEQLLLQRNQMSVRTVSRFYDDTGYIDAMKNHILRYWAE
                     HGRGKKLMLSFHGVPQKHHDLGDPYPDECRHTAKLLAEALELTEDQYVVSFQSQFGRA
                     KWVTPSTQDLFGKLPKQGVTELDVFCPGFLADCLETMEEIALMGREQFYEAGGKSYRY
                     IPCLNDNPDWIDALVALAEENLGGWR"
     gene            5956..6357
                     /locus_tag="ACFOCA_001361"
     CDS             5956..6357
                     /locus_tag="ACFOCA_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6988072.1"
                     /translation="MNTTRLPTALVLGCLCAAASAADNSIMTKGQKVYESNCVACHGK
                     KGEGRGTMFPPLYRSDFIMKKPQVLLHSMVKGINGTIKVNGKTYNGFMPATAISDADI
                     AAVATYIMNAFDNGGGSVTEKDVKQAKGKKN"
     gene            complement(6420..6710)
                     /locus_tag="ACFOCA_001362"
     CDS             complement(6420..6710)
                     /locus_tag="ACFOCA_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988073.1"
                     /translation="MAKYFTETGISVREYFDFFGEFVVLPAARSGDLALAYGLRLEAG
                     EEGLSLAELFDKRSDSQEPVECGRIDIGGFMLTAKEVDGDGNIGSMGLKVPR"
BASE COUNT         1707 a         1817 c         1575 g         1622 t
ORIGIN      
        1 taaagaaaga aaatcaatca catagaattt ctgcaaacaa agaaaaaagg aagccgcagc
       61 ttccttttca attttttgga ttaagcagcc aaagcagatt tggctttttc aaccaattgt
      121 gcaaaagcgg ctttatcgaa cacggccaaa tcagccaata ctttgcggtc gatttcaata
      181 gaggcgcgtt tcagaccgtt cataaatttg ctgtaagaca acccgttttc acgcgcacct
      241 gcattgatac ggacaatcca caattgacgg aattggcgtt tgcgttggcg gcggtcgcgg
      301 tatgcgtatt ggccggcttt cattaccgcc tgcttggcaa cgcggtaaac gtttttacga
      361 cgaccgcggt agcctttggc taacgcgaag attttttggt gacgggcacg ggcggtaaca
      421 ccgcgtttta cgcgtggcat attctaaact ccttaagcgt agggtaacat tttagcaaca
      481 gaagccaaat cgcgatcatt taccatagag gtaccgcgca gttggcgttt gtttttggtg
      541 gtctttttag tcaagatgtg gcgtttgaac gcatgagcgc gtttcacacc gccgttaccc
      601 agtactttaa agcgtttttt cgcgctagac ttggttttca ttttaggcat gggaaaactc
      661 cattcgttat cggataaggc attagggggt tttaaaacat cggtttcaaa cacttgaacc
      721 cacaatgcca cggttttttg ccgcaattaa aaacttactc cgaagcggcg atcggagtaa
      781 gcggagaatt atagctttat tttttcttcg gcgcaatcat catcaccatt tggcgacctt
      841 ccattttggg aaaggactcg atttgcgcca cttcagccaa atcttctttt acacgttcca
      901 aaagttgcgc gccgagttgc tggtgagcca tttcacggcc gcgaaaacgc aatgtcactt
      961 tgactttatc gccgtcggca aggaagcggt taatgttgcg catcttgatt tgataatcgc
     1021 cctcatccgt acccggacgg aatttgattt ccttgatttg cacctgcttt tgatttttct
     1081 tggcttcgtc gcgcttcttg gcttgttggt atttgtattt accgtaatcc atcagtttgc
     1141 acacaggcgg tttagcagtt ggggaaatct ctaccaaatc gacatcctgc ccttcggcca
     1201 tagccaaagc ttcacgaact gaaacgacac caagctgttc gcctgactca ctgattaaac
     1261 gcacttcttt ggcggtaatt tcgccgttga ttcgtgcttc gcgttcttga gcgatgatga
     1321 atactcctat aaaaattaat gattgacgag ggcatcagtg atttcttgct gcaattgcgc
     1381 aatgaaatca tccaaatcca aagaacccaa atcttctgct ttgcggcgta ccgccacttt
     1441 gttttcctgc ttttctttat cgccgacaac gatttgataa ggaaaacggt attggctgtt
     1501 gtcgcggatt ttgtaaccga ttttttcgtt acgcaaatcc aactcggcgc ggaatcctgc
     1561 cgcctgcaat ttggcagcca cttcacggca gtaatccgct tgattttcgg tgatattcat
     1621 aatcaccatt tgaaccggcg ccagccataa cgggaaagag cctgcatggt tctcaatcag
     1681 aatgccgata aaccgctcca aagaacccaa aatggcgcgg tgcaacatta cagggcgagc
     1741 gcggtcattg ttttcggtta catattctgc atccaagcgt tccggtaaga cgaaatctag
     1801 ttgcaatgta ccgcattgcc aagaacgacc caaggcatct ttgacgtgat attcgatttt
     1861 aggcccgtaa aacgcacctt cgccaggcaa ctcttcccac tctacgccac aagcggtcaa
     1921 tgcatcacgc aagccttgtt cggccttatc ccaaacttcg tcagaacctg cacgttgttc
     1981 agggcggagg gacaacttca cagcaacatc atggaaaccg aactgtttgt agatgcgaac
     2041 caacaattca ttgaatgcgc gcgcttcgct gacgatttgg tcttcggtac agaaaatatg
     2101 cgcatcatct tgcacaaaac cgcgaacacg catcagacca tgcaatgcac cgcttggttc
     2161 attgcggtgg caagaaccga actcggccaa acgcatcggc aaatcgcgat atgagcgcaa
     2221 accgttatta aaaatttgca catgacccgg acagttcatc ggtttcaccg cgtattcgcg
     2281 tttttctgaa ctggtcacga acatattgtc tttgtagttg tcccaatggc cggatttttc
     2341 ccaaaaggtt ttatccataa tttgaggcgt tttgacctct ttataaccgg cggcgttcag
     2401 ctctttacgc atatgctgtt caatcacttg ccacaaagcc cagcctttag gatgccaaaa
     2461 caccatgccc ggcgcttcgt cttgcagatg gaacagatcc aattgcttgc caagtttgcg
     2521 gtggtcgcgc ttttcggctt cttcgatacg ttgaatatag gcttttaatt cgtcttttgt
     2581 cgcccaagcc gtaccgtata tgcgttgcag catttcatta ttgctgtcgc cgcgccagta
     2641 tgcgcccgcc aacttggtca gtttgaagtt tttcaggaaa cgggtattcg gaacgtgcgg
     2701 tccgcggcac atatcgacat attcctgatg atgatacatc cccatcgctt ccacttcggg
     2761 catatcgtca atcaggcgca gtttgtattc ttcgccgcgc tcttgaaaaa ttttaatcgc
     2821 ctccgcacgc ggagtcatga ttttgaccac atcatagtct tgggcaatca attctttcat
     2881 acgcgcttca atggcggcaa catcttccgg tgtaaacggt ttttccgtgg cgatgtcgta
     2941 ataaaagccc tcttcaatga cggggccgat aaccattttt gcattaggat agagttgctt
     3001 gacggcatgc ccgacaagat gggcgcagga atggcggatg atttcgatgc cttcctgatc
     3061 tttcggagta atgatttgaa cagcagaatt ttcaacaatc gggtcgcacg catcgaccaa
     3121 tttgccgttt accctgcctg ccaccgccgc cctcgccaaa ccgacaccga tagacgcagc
     3181 aatttgagcc acggtaacgg gggattcgta ttggcggact gagccgtccg gcaaggtaat
     3241 gttcaacatc aaacgctccg aaagattaaa aaataacggc ataaatgccg ttatgggaat
     3301 ttggtaggca cgattggatt cgaaccaacg acccccacca tgtcaaggtg gtgctctaac
     3361 caactgagct acgtgccttc aaagaatttt tgcattttat cgggtcgttt taatttttgc
     3421 aagaggtatg tgcatttctt tatgcaacat tgtggcaaga tttggggatg tcgtctgaaa
     3481 aaccgtggga attcatttat aatgccgtct tttaaaacat atttcgaccc ctgtcgccca
     3541 actgacattc aatcttatgc ttaaatttac cttacacaaa aaagacggat acgcccgacg
     3601 cggcacgctg gagttgaacc acggcaaaat cgaaacgccg gtatttatgc ctgtcggtac
     3661 ttacggctcg gttaaggcga tgaacccgca aaacctgcac gacatcaagg cgcaaattat
     3721 tttgggcaac acttatcatt tgtggctgcg tccgggcttg gaggtcgtcg aacagtttgg
     3781 agggcttcac ggctttatcg gctgggacaa accgattctg accgactcgg gcggttttca
     3841 ggttttttct ttgtcggata tgcgcaagct gacggaagaa ggctgtacgt tcaaaagccc
     3901 gatcaacggc gacaagctgt ttttatcgcc tgaaatttcc atgaaaatcc aaacggtttt
     3961 gaactcggac atcgcgatgc agctggacga atgcacgccg ggcgaagcaa cgcgcgaaca
     4021 ggcgaaaaaa tcgctgcaaa tgagcctgcg ctgggcggaa cggagcaaaa aagcctttga
     4081 agatttgaaa aacccgaacg cgctgttcgg catcgtgcaa ggcgcgatgt atgaggattt
     4141 gcgcgaagaa tcgctgcgcg gtttggaaca gtttgatttt cccggccttg ccgtcggcgg
     4201 tttgtccgtc ggcgaaccca agcccgaaat gtaccgtatg ctgcgcgccg tcggtccgat
     4261 tctgccggaa cacaagccgc attacctgat gggcgtaggc acgccggaag acctcgtgta
     4321 cggcgtggca cacggcatcg atatgttcga ctgcgtgatg cccacccgca atgcacgcaa
     4381 cggctggctg tttacccgtt tcggcgattt gaaaatcaaa aacgccaaac acaagctcga
     4441 caagcgtccg atagacgaaa gctgcacctg ctacgcctgc caaaacttca gccgcgccta
     4501 cctgcaccat ctgcaccgca ccggcgaaat cttgggcgca cagttgaaca ccatccacaa
     4561 tctgcatttc taccaagtca ttatggcgga aatgcgcgaa gccgtcgaac aaggcaaatt
     4621 tgccgactgg caggcgcgat tccacgaaaa ccgcgcacgc ggcacagact gattccctgc
     4681 aatgccgtct gaagccgctt cagacggcat tttgccgctt taccctaccc gcactatttt
     4741 tcagaaaccg atcatgcttc cattctttcc agaaccctcc ctttcctata cgcaacaaaa
     4801 ccgtaccgcc gttttgctgt tgaacctcgg cacgcccgac gcgccgaccg cgcaggcggt
     4861 acgaccttat ctgaagtcct ttctgaccga ccggcgcgtc gtcgaactgc ccaaatggct
     4921 gtggtatccc attctgcatg gtctggtact gacgctccgc cccaaaaaaa gcgcgcacgc
     4981 ctatgaaaaa atctggttta aggaaggttc gcccttagaa gtttacacag cacgccaagc
     5041 tgccgcgctt gccaaacgta tgcccgacct catcgtccgc cacgccatga cctacggcaa
     5101 tccttcggtg gcagacgtat tgtcggaact gaaggcgcaa ggcgcgggca gactgctggt
     5161 catcccgatg tacccgcaat atgccgcttc cagcagcgga gcggcagtag ataaggtgtg
     5221 cgaacaatta ctgctgcaac ggaaccaaat gagcgtccgc accgtttcgc gcttttatga
     5281 cgataccggc tacattgatg cgatgaaaaa ccacatcctc cgatattggg cggaacacgg
     5341 gcgcgggaaa aaactgatgt tgagttttca cggcgtaccg cagaagcacc acgacctcgg
     5401 cgacccctat cccgacgagt gccgccacac cgccaaactg cttgccgaag cactggaact
     5461 gaccgaagac caatatgtcg tatcgttcca aagccaattc ggcagggcaa aatgggttac
     5521 accgagcacg caggatttgt tcggcaaact gcccaaacag ggggtaaccg agctggacgt
     5581 attttgcccg ggctttttgg cagactgttt ggaaaccatg gaagaaatcg ccctgatggg
     5641 gcgggaacag ttttacgaag caggcggcaa aagctaccgc tacatcccct gcctcaacga
     5701 caaccccgac tggatagacg cactcgtcgc acttgccgaa gaaaaccttg gcggctggcg
     5761 ttgaaactgt ttgacccatg tctaaaatgc cgtctgaacg ccgtgttcag acggcatttt
     5821 cccgctactt tagcgtatga tggcatctat gccggacaac aacatcaagt gcaaccttac
     5881 taccgattcg gcaaaaaaat ctttcacccg ctacgcaaaa tcaacaacaa ggtttcaaac
     5941 attaaggaaa caccaatgaa cacaacccga ctgccgaccg ccctcgtctt gggctgcctc
     6001 tgcgccgccg cttctgccgc cgacaacagc atcatgacaa aagggcaaaa agtgtacgaa
     6061 tccaactgcg tcgcctgcca cggcaaaaag ggcgaaggcc gcggaaccat gtttccgccg
     6121 ctctaccgct ccgacttcat catgaaaaaa ccgcaggtgc tgctgcacag catggtcaaa
     6181 ggcatcaacg gtacaatcaa agtcaacggc aaaacctaca acggattcat gcccgcaacc
     6241 gccatcagcg atgcggacat tgccgccgtc gccacttata tcatgaacgc ctttgacaac
     6301 ggcggcggaa gcgttaccga aaaagacgta aaacaggcaa aaggcaaaaa aaactaaaca
     6361 gacaaaatgc cgtctgaaac cggcaatccg gcttcagacg gcattcaaat caaacctttc
     6421 taacgcggta ctttcagccc catagacccg atattgccgt ccccgtcaac ctccttcgcg
     6481 gtcagcataa agccgccgat gtcaatacgg ccgcactcga ccggctcctg actgtcggaa
     6541 cgcttatcga aaagctcggc aaggctcaaa ccctcttcgc ccgcttccag cctcaaaccg
     6601 taagcaagtg ccaaatcacc cgaacgtgct gccggcaaaa cgacaaactc accgaagaaa
     6661 tcaaaatact cacggacgct aatacccgtc tcggtaaagt atttcgccat tttatagtga
     6721 a
//
LOCUS       DAXIFS010000100         6652 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.100, whole genome shotgun sequence.
ACCESSION   DAXIFS010000100 DAXIFS010000000
VERSION     DAXIFS010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6652
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.100"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..108
                     /locus_tag="ACFOCA_001363"
     CDS             <1..108
                     /locus_tag="ACFOCA_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6988074.1"
                     /translation="KYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILQK"
     gene            1029..1607
                     /locus_tag="ACFOCA_001364"
     CDS             1029..1607
                     /locus_tag="ACFOCA_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017147256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6988075.1"
                     /translation="MHYNPVAYGKIKVQSWKERRDFNIVKQDLDFSCGAASVATLLNN
                     FYGQKLTEEDVLKKLDKEQMPASFEDMRRIMPDLGFEAKGYALSFEQLAQLQIPVIVY
                     LKYRKDDHFSVLRGIDGNTVLLADPSLGHVSMSRAQFLDAWQTREGNLAGKILAVVPK
                     GRDAGGDKAFFTRSPKRQTEFAVGQVKWWRAY"
     gene            1737..3398
                     /locus_tag="ACFOCA_001365"
     CDS             1737..3398
                     /locus_tag="ACFOCA_001365"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HFC6988076.1"
                     /translation="MTESITRDSMQYDVVIVGAGPSGLSAAIKLKQLAEQNGREISVC
                     VVEKGSEAGAHSLAGAVIDPIALNELIPDWKEKGAPLTRTVTQDKVLFLTEKKAFNLP
                     ITPNFDNHGNYIVSLGEVVRWLAEQAENLGVEIYPGFAAAEVLYHKDGSVKGIATGNM
                     GVGKNGEPTDSFQPGMELWARQTLFAEGCRGSLSKQIIERFKLDQNSQPQTYGLGIKE
                     VWEVPSEQHQPGLVVHSAGWPLDSKTYGGAFVYHFDDNKVAVGFVVGLDYQNPYLSPF
                     EEFQRFKTHPEIRKTFEGGRRIAYGARSLIEGGFQSLPKLSFKGGVLVGDAAGFLNMP
                     RIKGIHTAMKSAMLAAEAVFPLLENLEEVENFDSGKEAADYQQRFEQSWLYQELYAAR
                     NVRPSFKWGVYLGSIYTGIDQMIFRGKAPWTLKHHGKDNEQLKKAAACKPIDYPKPDG
                     VLTFDRLSSVFLANLAHEENQPDHLVLNNPQTMIDVNYKEYASPETRYCPAGVYEIVE
                     ENGSPRLQINAANCVHCKTCDIKDPTQNITWICPESASGPNYGGM"
     gene            complement(3532..4026)
                     /locus_tag="ACFOCA_001366"
     CDS             complement(3532..4026)
                     /locus_tag="ACFOCA_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HFC6988077.1"
                     /translation="MKKTLLAIVAVSALSACRQAEEGPPPLPRQISDRSVGHYCSMNL
                     TEHNGPKAQIFLNGKPDQPVWFSTIKQMFGYTKLPEEPKGIRVIYVTDMGNVTDWTNP
                     NADTEWMDAKKAFYVIDSGFIGGMGAEDALPFGNKEQAEKFAKDKGGKVVGFDDMPDT
                     YIFK"
     gene            complement(4023..4154)
                     /locus_tag="ACFOCA_001367"
                     /pseudo
     CDS             complement(4023..4154)
                     /locus_tag="ACFOCA_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(4249..4863)
                     /locus_tag="ACFOCA_001368"
                     /pseudo
     CDS             complement(4249..4863)
                     /locus_tag="ACFOCA_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709597.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            complement(4921..6120)
                     /locus_tag="ACFOCA_001369"
     CDS             complement(4921..6120)
                     /locus_tag="ACFOCA_001369"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
                     /protein_id="HFC6988078.1"
                     /translation="MASGVYQTKLYIDKPITIEGPADRSATIEGDRSGRTIAVHAPDV
                     TLRNLTVTRSGMSLPAMDAGIYLEETAPRALIEHNNILDNSVGVYLHGSADAMVRENK
                     IVGDATLRVNERGNGVTVWNAPGAQVVGNDISKGRDGIFSNTSTHNTYKNNRFSDLRF
                     AVHYMYTNDSEISGNISVGNNMGYVLMFSERLKVFDNIAVGSRDQGIMLNYVNYSDIH
                     DNIINKAGKCVFAYNANYDKLSANHFENCQIGIHFTAAIEGTSLHDNSFINNESQVKY
                     VSTRFLDWSEGGHGNYWSDNSAFDLNGDGFGDSAYRPNGIIDQIIWRAPVLRLLMNSL
                     AISIVKWAQAQFPAVLPGGVVDSKPLMKPYVPKIQTRYQAMKDELLKEAETRQSEWGR
                     AENGSLN"
     gene            complement(6009..6530)
                     /locus_tag="ACFOCA_001370"
     CDS             complement(6009..6530)
                     /locus_tag="ACFOCA_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NosR"
                     /protein_id="HFC6988079.1"
                     /translation="MSCFSIKRMSAFRARITVFFTAFVFLTAALPAYAERLPDFLAKI
                     QPSEIFPGADRYGKPEGKPMVARVYKGDEQLGLVYITTDAVNTRGYSNKPIDTLMALA
                     NDGTIAGAKLVDHHEPIMLIGIPHLPAPMRAIRSNWLPAYIKPNFISTNRLRLKGLLT
                     VLQPSKETGADVR"
BASE COUNT         1603 a         1666 c         1788 g         1595 t
ORIGIN      
        1 aaatacaacg gaatcgatcg taaatctttc ccgctgttct tgaaagaatg cgaatttcga
       61 tttaacttcg gcacaccgtc tcaacagctt aaaatcctgc aaaaatgatg tggaatttag
      121 ggctaatcta gtacagcccc ttagatttaa ttcactatac ctgcgtaatg gtatcgggta
      181 ctcatcatca acctgccttg cattcggttg tgttgtccgg caactgtccg gttgtgtcga
      241 tgggttgccc tgccgctccc tgtgctacgc aacggttgtg tgccttgggt gggcgcgggt
      301 ggcggccggg cggtttgttg ctatgatacg ggagttccga tatacaaggg tgggcttcag
      361 cccaccaatc aacgaccgaa aaagaaaaaa cgttgggctg aagcccactc tacgcaatta
      421 cgcaactgtt atcgtgggga tgacgggatt ttaggttttt gtttttctgt ttttgcggga
      481 aggatgggtt ttaggttgcg gtcatttatc ggaaaagcag aaatcgctcc gccgtcattc
      541 ccgcgaaagc gggaatctga acacgtccgt agggaaacct atatcccgtc attcccacga
      601 aagtgggaat ctagaacctc tgaattttca gacaaccttt gaatattgcc gccgtcccgc
      661 gttctagatt cccgcctgcg cgggaatgac gattcatcag tttcccgaaa cgcccgaaaa
      721 accgaaaccg agcaaaccgg attcccgcct gcgcgggaat gacgatttat aagtttcccg
      781 aaacgcccaa aaaaaccgaa atccgacagg cgggattttt gctttcgtgg ggatgacggg
      841 attttaagtt acggtcattt atcggaaaag tagaaatcgc tccgccgtca ttccagcgaa
      901 ggcgggaatc tgaacacgtc cgcacggaaa cctatagtgg attaacaaaa atcaggacaa
      961 ggcgacgaaa ccgcagacag tacagatagt acggcaaggc gaggtaacgc cgtactggtt
     1021 taaatttaat ccactataat cctgttgctt atggaaaaat caaagtgcag agttggaaag
     1081 agaggcggga tttcaatatt gtaaagcagg atttggattt ttcctgtggg gcggcttcgg
     1141 tggcgacgct tttgaacaat ttttacgggc aaaagctgac ggaagaggac gtgttaaaaa
     1201 aactggataa ggagcagatg cccgcgtcgt ttgaggatat gcggcgcatt atgcctgatt
     1261 tgggttttga agcgaaaggc tatgccctgt ctttcgagca gcttgcacag ttgcaaatcc
     1321 ccgtcatcgt gtatctgaaa taccgcaagg atgatcattt ctcggtattg cgcggtatag
     1381 acggcaatac ggttttgctt gccgacccgt cgctgggtca tgtttcaatg agcagggcgc
     1441 agtttttgga tgcttggcaa acccgtgagg gaaatttggc aggtaagatt ttggcggttg
     1501 tgccgaaagg gagggatgcc ggcggggata aggcgttttt cacacgcagt ccgaaacgtc
     1561 agacggagtt tgcggtcgga caggtaaaat ggtggcgtgc ttattgaaat ttcgacaaag
     1621 gtcgtctgaa aaccgaaaat atggttttca gacgaccttt gttgtatttg gtaactatat
     1681 gttctcgttg tataattacg gatttgcaat tcaataataa atacacagga accgccatga
     1741 cagaatccat cacccgcgac agtatgcaat acgatgtcgt gattgtcggc gcaggcccat
     1801 cgggtttgtc cgccgccatc aaactcaagc agcttgccga acaaaatggg cgcgaaatca
     1861 gcgtttgcgt ggtggagaaa ggttcggagg cgggtgcaca ttcgctggcg ggcgcggtta
     1921 tcgatccgat tgcgctgaat gagttgattc ccgactggaa agaaaaaggc gcgccgctga
     1981 cgcgtacggt aacgcaggac aaagtgttgt tcctgactga gaaaaaagcg ttcaatctgc
     2041 ctattacccc aaatttcgac aatcacggca actacatcgt cagcttgggc gaagtcgtgc
     2101 gctggttggc ggagcaggcg gaaaatttgg gcgtggaaat ttatccgggc tttgccgctg
     2161 ccgaagtgct gtatcacaaa gacggttcgg tcaaaggcat tgcaaccggc aatatgggcg
     2221 tgggcaaaaa cggcgagccg accgattcat tccagcccgg catggagctt tgggcacggc
     2281 aaaccctgtt tgccgagggc tgccgaggtt cgctttccaa acaaatcatc gaacgcttca
     2341 aactcgacca aaacagccag ccgcaaactt acggcttggg cattaaagaa gtttgggaag
     2401 tgccgtccga acagcatcag cccggtttgg tggtgcacag cgcaggctgg ccgctggaca
     2461 gcaaaaccta cggcggcgcg tttgtttacc atttcgacga caacaaagtt gccgtcggct
     2521 tcgtggtcgg tttggactat caaaatcctt atctgtcgcc gtttgaagag ttccaacgtt
     2581 tcaaaaccca tcccgaaatc cgcaaaacct ttgaaggcgg ccgccgcatt gcttacggtg
     2641 cgcgttcgct gattgaaggc ggttttcaaa gtttgccgaa gctctcgttc aaaggcggcg
     2701 ttttggtcgg cgatgcggcg ggtttcctca atatgccgcg catcaaaggc attcataccg
     2761 cgatgaaatc cgccatgctc gccgccgaag ccgtgttccc cttgttggaa aaccttgaag
     2821 aagtggaaaa cttcgacagc ggcaaagagg cggcggatta tcagcaacgt tttgaacaaa
     2881 gctggctgta tcaagagctt tacgccgcgc gcaatgtccg tccgtcattc aaatggggcg
     2941 tttacctcgg ctcaatctac accggcatcg atcagatgat tttcagaggc aaagccccgt
     3001 ggaccttgaa acatcacggc aaagacaacg agcagcttaa aaaagccgcc gcgtgcaagc
     3061 cgattgatta tccgaaaccc gacggcgtat tgaccttcga ccgcttgagc agcgtcttcc
     3121 ttgccaatct cgcgcacgaa gaaaaccagc ccgaccattt ggtgctgaac aatccgcaaa
     3181 cgatgataga cgtgaactac aaagaatacg cctcacccga aacgcgctat tgtccggccg
     3241 gcgtgtatga aatcgtcgaa gaaaacggca gcccgcgcct gcaaatcaac gcggcaaact
     3301 gcgtgcactg caaaacctgc gacatcaaag acccgacgca aaacatcact tggatttgcc
     3361 ccgaaagcgc gagcgggccg aattacggcg ggatgtaaac cttattccgc cgttacgccc
     3421 ggtcaggaat aaggaatggg gcagttgttc aaacctgccc cgtttgaacc tatgacaaaa
     3481 aatgccgtct gaaccttggc ttcaacgttc agacggcatt tttgtttgga tttacttgaa
     3541 aatataggta tcaggcatat cgtcgaaacc gacaacctta ccgcctttat cctttgcaaa
     3601 tttctcagcc tgctctttgt tgccgaacgg cagcgcgtct tccgcaccca taccgccgat
     3661 aaagccgctg tcgatgacgt aaaaggcttt tttcgcatcc atccactccg tgtcggcatt
     3721 gggattcgtc caatcggtaa cattgcccat atcggtaacg taaatcacgc ggatgccttt
     3781 gggttcttcg ggcagcttgg tatagccgaa catctgcttg atggtggaga accaaacggg
     3841 ctgatcgggt ttgccgttca agaaaatctg ggctttgggg ccgttgtgtt cggtcaggtt
     3901 catactgcaa tagtgtccga ccgaacggtc gctaatctgc cggggtaaag gcggcggccc
     3961 ctcttccgcc tgccggcagg cacttaaggc ggaaacggca acaattgcca acagggtttt
     4021 cttcatattt gtcgctttct aaaaattccg gctgccaaaa caagcggaat gataacccat
     4081 aaaacctgag cggtcagcaa aacggggacg gtcaggctga tttgtccgct caaacccgcc
     4141 atacccgcat atagtggatt aacaaaaatc aggacaaggc aacgaagccg cagacagtac
     4201 aaatagtacg gcaaggcgag gtaacgccgt actggtttaa atttaatcca cgataatgcg
     4261 gtcggcgtgt ccgtccaact cggcaagggc gtgggtgctg agcaatacgg tcgcgccgcg
     4321 cccgttgagt tcgcgcacga cttcgtaaaa catttgtcgt gatgcagggt cgaggccggt
     4381 tgtcggttcg tcaaacagca ggactttggg ctcgcccagc agggcttgtg ccaaggcaag
     4441 gcgttggcgc atccctttag aataagtgcc gacgcggcgg tgtgccgcct gtgaaatgcc
     4501 gacgcgctca agcagccccc ggttctgcgt gagcggctgt tttttaagtt tggcataaaa
     4561 atccagcgtt tcgatgccgg tcagcgaagg gtgcagcgca acggtttcgg gcaggtagcc
     4621 gatttggctg cgaagccgcg cccccgcttt gctgccggta cgttcgccca aaagcatcac
     4681 ttcgccttcg gtcggggtaa tcagcccgag tatcagcttc ataatggtgg acttgcccgc
     4741 gccgttgtat ccggcaagcc cgacgctttc tcctgccttc aaaaccaaat cgacttggtt
     4801 gacggctttt tgcgccccga accgtttggt gacattcctc aattcgacat gatgtgtggt
     4861 catggttgtt ccttttgtgt tttcagacgg catttggatc cggatgccgt ctgaagcaga
     4921 ctagttcaaa gaaccgtttt ccgccctgcc ccattccgac tgccgtgttt cggcttcttt
     4981 gagcaactcg tccttcattg cctgatagcg ggtttgaatt ttggggacat aaggcttcat
     5041 cagcggtttg ctgtccacca cgccgccggg cagaacggcg ggaaactgcg cctgcgccca
     5101 tttgacgatg ctgattgcga gactgttcat caagaggcgc aatacgggcg cgcgccagat
     5161 gatttggtcg atgatgccgt tgggccggta cgcgctgtcg ccgaagccgt cgccgttcaa
     5221 atcgaacgca ctgttgtcgc tccaatagtt gccgtgtccg ccctcgctcc agtcgagaaa
     5281 gcgcgtgctg acgtatttga cctggctttc gttgttgata aaggaattgt cgtgcaggga
     5341 cgtgccttcg atggcggcgg taaagtgtat gccgatttgg cagttttcaa aatgattggc
     5401 ggacagttta tcgtagttgg cattgtaggc aaaaacgcac ttgcccgctt tgttgataat
     5461 gttgtcgtga atatcggaat agttgacata gttgagcatg atgccttggt cgcggctgcc
     5521 gacggcgata ttgtcaaaca ctttgagccg ctcggaaaac atcagcacat agcccatatt
     5581 gttgcccacg gaaatattgc cgctgatttc gctgtcgttg gtgtacatat agtggacggc
     5641 gaaacgcaaa tcgctgaagc ggttgttttt ataggtgttg tgcgtgctgg tattggaaaa
     5701 aatgccgtcg cggcctttgg aaatatcgtt gccgacgacc tgcgcgccgg gcgcgttcca
     5761 aacggtaacg ccgttgcctc gctcgttcac gcgcaaagtc gcatcgccaa caattttgtt
     5821 ctcgcgcacc atcgcatcgg cagaaccatg cagatatacg ccgaccgaat tatccaaaat
     5881 attgttgtgt tcaatcaggg cgcgcggggc ggtttcttcg agataaatac cggcatccat
     5941 tgcaggcagg ctcataccgg aacgggtaac ggtcaggttg cggagcgtta cgtccggcgc
     6001 atgcacagct atcgtacgtc cgctcctgtc tccttcgatg gttgcagaac ggtcagcagg
     6061 cccttcaatc gtaatcggtt tgtcgatata aagtttggtt tgatatacgc cggaagccag
     6121 tttgagcgta tcgcccgcat gggcgcgggc aaatgcggga taccgatcag cataatcggt
     6181 tcgtgatgat cgaccagttt cgctccggct atcgtgccgt catttgccaa agccatcagc
     6241 gtatcgatcg gtttgttcga ataaccgcgc gtattgaccg catcggtcgt gatatagacc
     6301 aagcccaact gctcatcgcc tttgtaaacg cgggcaacca taggcttgcc ttccggcttg
     6361 ccgtaacggt ccgcacccgg aaaaatttcc gaaggctgta ttttcgccag aaaatcaggc
     6421 agacgctccg cataagcggg cagtgccgcc gtcaaaaaga caaaggcggt aaaaaacact
     6481 gttatccgcg cccgaaacgc ggacatacgt ttgattgaaa aacaggacat gactatcccc
     6541 gatataccga tactctttaa tattgatatt atatgaatca tctatcggcg attttttgat
     6601 gcaaattaaa tttacaaatc ttaaaaccaa tccgcatacg ggataatata gt
//
LOCUS       DAXIFS010000101         6597 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.101, whole genome shotgun sequence.
ACCESSION   DAXIFS010000101 DAXIFS010000000
VERSION     DAXIFS010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6597
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.101"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            127..1032
                     /gene="glyQ"
                     /locus_tag="ACFOCA_001371"
     CDS             127..1032
                     /gene="glyQ"
                     /locus_tag="ACFOCA_001371"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFC6988080.1"
                     /translation="MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRAL
                     GPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGI
                     DPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITY
                     GIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQ
                     FNDYEAQAKRLLAVEGASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRAL
                     SRAVAQKYVESREKLGFPLMKANAA"
     gene            1109..1519
                     /locus_tag="ACFOCA_001372"
     CDS             1109..1519
                     /locus_tag="ACFOCA_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding protein YggL"
                     /protein_id="HFC6988081.1"
                     /translation="MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAA
                     DDAEAFGRFMDELIAYLEANDFEMAGGGDCGDFSCLFQKSAPRGLGETEKKAIISWLA
                     GREDVATLHATPLVDGFYGDDGWENYSETYKQAD"
     gene            1540..3603
                     /gene="glyS"
                     /locus_tag="ACFOCA_001373"
     CDS             1540..3603
                     /gene="glyS"
                     /locus_tag="ACFOCA_001373"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFC6988082.1"
                     /translation="MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGA
                     AEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAK
                     IEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINAAVKKLPIPKVMRWGSSTFTFVR
                     PVHGLIVLHGGDVVNVSVLGLQSGNKTLGHRFLSNGEITIENADSYAAQMREQGKVVA
                     PFAERKAAIQTALERQARRLNAAVAADEALLDEVTALVEWPVVLEAGFEEHFLAVPQE
                     CLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTADPSHIIQGNERVLRARLSDAEFF
                     YKQDQKATLESRLPKLANVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAAR
                     LAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAIEQHYQPRFAGDKLPESKIA
                     AAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFD
                     SFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDLTAKLQAVA
                     AFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAA
                     AVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADI
                     ALLGE"
     gene            3620..4666
                     /locus_tag="ACFOCA_001374"
     CDS             3620..4666
                     /locus_tag="ACFOCA_001374"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6988083.1"
                     /translation="MPSEAFRRHRAYRENKLQSLVSVLICAYNVEKYFAQSLAAVVNQ
                     TWRNLEILIVDDGSTDGTLAIAKDFQKRDSRIKILAQAQNSGLIPSLNIGLDELAKSG
                     MGEYIARTDADDIAAPDWIEKIVGEMEKDRSIIAMGAWLEVLSEEKDGNRLARHHRHG
                     KIWKKPTRHEDIADFFPFGNPIHNNTMIMRRSVIDGGLRYNTERDWAEDYQFWYDVSK
                     LGRLAYYPEALVKYRLHANQVSSKYSIRQHEIAQGIQKTARNDFLQSMGFKTRFDSLE
                     YRQIKAVAYELLEKHLPEEDFERARRFLYQCFKRTDTPPAGAWLDFAADGRMRRLFTL
                     RQYFGILRRLLKNR"
     gene            4708..5535
                     /locus_tag="ACFOCA_001375"
     CDS             4708..5535
                     /locus_tag="ACFOCA_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6988084.1"
                     /translation="MQNHVISLASAAERRAHIADTFGAHGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLA
                     EDAWLQERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISR
                     KAMRFFLDRFAALPPEGLHPVDLMMFSDFFDREGMPVCQLDPALCAQELHYAKFHDQN
                     SALGSLIEHDRLLNRKQQWRDSPANTFKRRLIRALTKISREREKRRQRREQFIVPFQ"
     gene            5547..5642
                     /locus_tag="ACFOCA_001376"
                     /pseudo
     CDS             5547..5642
                     /locus_tag="ACFOCA_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
     gene            5684..6526
                     /locus_tag="ACFOCA_001377"
     CDS             5684..6526
                     /locus_tag="ACFOCA_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6988085.1"
                     /translation="MQNHVISLASAAERRAHIADTFGRHDIPFQFFDALMPSEELNRM
                     MAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLA
                     EDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISR
                     EAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKN
                     SMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRV
                     ISFK"
BASE COUNT         1684 a         1762 c         1746 g         1405 t
ORIGIN      
        1 tggtttaaat ttaatccact atatcatgta tgccgtgttt tcaaatcagt ctgtctttga
       61 gataaaccta tccaaacagc aatggaaaca gtaaaataaa ccctttattt tatcgaatca
      121 taagccatgc ttaccttcca acaaatcatc ttcaaactgc aaaccttctg ggcagacaaa
      181 ggctgcaccg tcatccaacc cttcgacatg gaagtcggtg ccggcacatc ccatcccgcc
      241 acctgcctgc gcgcgctcgg tcccgagcct tggtttgccg cctacgtcca acccagccgc
      301 cgccctaaag acggccgcta cggcgacaat cccaaccgcc tgcaacacta ctatcaattc
      361 caagtcgccc tcaaacccgc ccccgccaat atccaagacc tctatcttga ttctctgcgc
      421 gaattgggca tcgaccccaa agtccacgac atccgttttg tcgaagacga ctgggaaaat
      481 ccgactttgg gcgcgtgggg tttgggctgg gaagtctggc tcaacggcat ggaagtaacc
      541 cagtttacct acttccaaca agtcggcggc attgactgca cccccgtact cggcgaaatc
      601 acctacggca tcgaacgctt ggcgatgtac ctgcaaggcg tggaaaacgt ctatgacctc
      661 gtttgggcaa aaacgctgga cggcaatacc gtaacctacg gcgacgtgta ccaccaaaac
      721 gaagtcgaac aatccaccta caacttcgaa tacagcgatg ccgattggct gctgcgccag
      781 ttcaacgact acgaagcgca agccaaacgc ctgcttgccg ttgaaggagc aagccttgcg
      841 ctgcctgcct acgagctggt tctcaaagcg gggcatacgt tcaacctctt ggacgcgcgc
      901 ggcgcgattt ccgtaactga gcgggcaact tatattggac gtattcgtgc attgagccgc
      961 gccgtggcgc aaaaatatgt tgaaagccgc gaaaaactgg gcttcccttt aatgaaggca
     1021 aatgctgcct aagggggcga cgatttttta cgttcgggcg gcacgataag gcagccgtcc
     1081 ggaagccatt atatttttta ggaaaatcat gcctgtctat ttccgcaccc caagcaggaa
     1141 acgcctgcac aaaatgaacc gccgccagca taaaaagctg catttgggcg agtttcaaac
     1201 attgattttc ggcgttcaag gcagtttgca ccaagctgcg gacgatgccg aagcgtttgg
     1261 ccgctttatg gacgagctga ttgcgtatct tgaggcaaac gactttgaaa tggcgggcgg
     1321 gggcgattgc ggcgattttt cgtgcctgtt tcaaaaatcc gccccccgag gcttgggcga
     1381 aaccgagaaa aaagccatta tctcttggct ggcaggccgc gaagatgtcg ccactttgca
     1441 cgccaccccg ctggttgacg gtttttacgg ggatgacggc tgggaaaatt acagcgaaac
     1501 ctataaacag gcagattaac caaattcaaa gaaagccgaa tgatgaccca aaccctttta
     1561 atcgaactcc ttaccgaaga actcccgccc aaagctctga ataatctggg caaccatttt
     1621 gccgccgccg ttgccgaagg cttggaaaaa gcgcaactgg ttgacggtgc agccgaattt
     1681 acggcttatg cctcgccgcg ccgtttggcg gttcaagtca aaaacgtcaa agccgttcag
     1741 gccgaccaaa aaatcgtgaa aaaaggccct gccgtggcga atgccatgaa agacggtgcg
     1801 ccgaccaagg ctttggaagg tttcgcacgc ggtgcgggcg cgaaaatcga agacttgacc
     1861 atcgtccacg acggcaagca ggacgtgtac gcctacgaat acgtccaaac cggcaaaccg
     1921 ttgggcgagc ttttggaaga cattatcaat gccgcagtga aaaaattgcc gattccaaaa
     1981 gtaatgcgtt ggggcagcag cacatttacc ttcgtgcgcc ccgtccacgg gctgattgtg
     2041 ctgcacggcg gcgatgtcgt gaacgtcagc gttttgggtc tgcaaagcgg caacaaaacc
     2101 ttgggacacc gcttcctctc caacggcgaa atcaccattg aaaacgccga cagctacgcc
     2161 gcacaaatgc gcgaacaagg caaagtcgtc gctccgtttg ccgagcgcaa agccgcgatt
     2221 cagacggcat tggaaaggca ggcgcgccgt ctgaacgccg ccgtcgccgc cgatgaagcc
     2281 ttgttggacg aagtaaccgc gctggtcgaa tggcctgtgg tattggaagc cggttttgag
     2341 gaacacttcc tcgccgtgcc tcaagaatgc ttgattttga cgatgcagca aaaccaaaaa
     2401 tacttcccgc tgctcgacca aaacggcaag ctgatgaacc gcttcctgct ggtctccaac
     2461 ctgcaaaccg cagacccgtc gcacatcatc caaggcaacg aacgcgtatt gcgcgcgcgc
     2521 ctgtctgatg ccgagttctt ctacaagcaa gaccaaaaag cgactctgga aagccgcctg
     2581 cccaagctgg caaacgtggt gtaccacaac aaaatcggtt cgcaggccga acgcatcgaa
     2641 cgcctgcaaa gcattgccgc ccacatcgct aaagcgttgg gcgcagatgc tgccgcagcc
     2701 gaacgcgccg cacgtttggc aaaagccgac ttggtgaccg aaatggtcgg cgagttccct
     2761 gaactgcaag gcacgatggg caaatactat gcccgcttgg acggcgaaac cgaagaaatc
     2821 gccgaagcca tcgagcagca ctatcagccg cgttttgccg gcgacaagct gcccgaaagc
     2881 aaaattgccg ccgccgtggc actggcggac aagctggaaa ccctggtcgg catttggggc
     2941 atcggtctga ttccgaccgg cgacaaagac ccctacgccc tgcgccgcgc cgccttgggt
     3001 attttgcgga tgctgatgca gtacggtttg gacgtgaacg aactgattca gacggcattc
     3061 gacagcttcc ccaaaggttt gctcaacgaa aaaacgccgt ctgaaaccgc cgactttatg
     3121 caggcgcgcc ttgccgtgtt gctgcaaaac gattatccgc aagacatcgt tgccgccgta
     3181 ctcgccaaac agccgcgccg tttggacgat ttgaccgcca aactgcaggc cgttgccgcg
     3241 ttcaaacaac tgcccgaagc cgccgcgctc gccgccgcca acaaacgcgt gcaaaacctg
     3301 ctgaaaaaag ccgatgccga gttgggcgcg gttaacgaaa gcctgttgca acaggacgaa
     3361 gaaaaagccc tttttgctgc tgcgcaaggc ttgcagccga aaatcgccgc cgccgtcgcc
     3421 gaaggcaatt tccaaaccgc cttgtccgaa ctggcttccg tcaagccgca agtcgatgcc
     3481 ttctttgacg gcgtgatggt gatggctgaa gatgccgccg tgaaacaaaa ccgcctgaac
     3541 ctgctgaacc gcttggcaga gcagatgaac gcggtagccg acatcgcgct tttgggcgag
     3601 taaccgttgt acagtccaaa tgccgtctga agccttcaga cggcatcgtg cctatcggga
     3661 gaataaattg cagtctttag tcagcgtatt gatttgcgcc tacaacgtag aaaaatattt
     3721 cgcccaatca ttagccgccg tcgtgaatca gacttggcgc aacttggaga ttttgattgt
     3781 cgatgacggc tcgacagacg gtacgcttgc cattgccaag gattttcaaa agcgggacag
     3841 ccgtatcaaa atccttgcac aagctcaaaa ttccggcctg attccctctt taaacatcgg
     3901 gctggacgaa ttggcaaagt caggaatggg ggaatatatt gcacgcaccg atgccgacga
     3961 tattgccgcc cccgactgga ttgagaaaat cgtgggcgag atggaaaaag accgcagcat
     4021 catcgcgatg ggcgcgtggc tggaagtttt gtcggaagaa aaggacggca accggctggc
     4081 gcggcatcac aggcacggca aaatttggaa aaagccgacc cgacacgaag atattgccga
     4141 ctttttccct ttcggcaacc ccatacacaa caacacgatg attatgaggc gcagcgtcat
     4201 tgacggcggt ttgcgttaca acaccgagcg ggattgggcg gaagattacc aattttggta
     4261 cgatgtcagc aaattgggca ggctggctta ttatcccgaa gccttggtca aataccgcct
     4321 tcacgccaat caggtttcat ccaaatacag catccgccaa cacgaaatcg cgcaaggcat
     4381 ccaaaaaacc gccagaaacg attttttgca gtctatgggt tttaaaaccc ggttcgacag
     4441 ccttgaatac cgccaaataa aagcagtagc gtatgaattg ctggagaaac atttgccgga
     4501 agaagatttt gaacgcgccc gccggttttt gtaccaatgc ttcaaacgga cggacacgcc
     4561 gcccgccggc gcgtggctgg attttgcggc agacggcagg atgcggcggc tgtttacctt
     4621 gaggcaatac ttcggcattt tgcgccgatt gctgaaaaac cgttgaaaaa cgccgtttta
     4681 tccaacagac aaaaaacagg ataaattatg caaaaccacg ttatcagctt ggcttccgcc
     4741 gcagaacgca gggcgcacat tgccgatacc ttcggcgcgc acggcatccc gtttcagttt
     4801 ttcgacgcac tgatgccgtc tgaaaggctg gaacaggcaa tggcggaact cgtacccggc
     4861 ttgtcggcgc atccttattt gagcggagtg gaaaaagcct gctttatgag ccacgccgta
     4921 ttgtggaaac aggcattgga cgaaggtctg ccgtatatcg ccgtatttga agatgatgtc
     4981 ttgctcggcg aaggcgcgga gaaattcctt gccgaagacg cttggctgca agaacgcttt
     5041 gaccccgatt ccgcctttat cgtccgcttg gaaacgatgt ttatgcacgt cctgacctcg
     5101 ccctccggcg tggcggacta ctgcgggcgc gccttcccgc tgttggaaag cgaacactgg
     5161 gggacggcgg gctatatcat ttcccgaaaa gcgatgcggt ttttcctgga caggtttgcc
     5221 gccctgccgc ccgaagggct gcaccccgtc gatctgatga tgttcagcga ttttttcgac
     5281 agggaaggaa tgccggtttg ccagctcgat cccgccttgt gcgcccaaga gctgcattat
     5341 gccaagtttc acgaccaaaa cagcgcattg ggcagcctga tcgaacacga ccgcctcctg
     5401 aaccgcaaac agcaatggcg cgattccccc gccaacacat tcaaacgccg cctgatccgc
     5461 gccttgacca aaatcagcag ggaaagggaa aaacgccggc aaaggcgcga acagttcatt
     5521 gtgcctttcc aataaaagga ggagagatgg acatcgtatt tgcagcagac ggcaggatgc
     5581 ggcggctgtt taccttgagg caatacttcg gcattttgcg ccgattgctg aaaaaccgtt
     5641 gaaaaacgcc gctttatcca acagacaaaa aacaggataa attatgcaaa accatgttat
     5701 cagcttagct tccgccgcag aacgcagggc gcacattgcc gataccttcg gcaggcacga
     5761 cattccgttt cagtttttcg acgcactgat gccgtctgaa gaactgaatc ggatgatggc
     5821 ggaattggtg ccgggattgg caaaacagca cctgttgagc gaagtggaaa aagcctgctt
     5881 tatgagccac gccgtattgt ggaaacaggc attggatgaa ggtctgccct atgttgccgt
     5941 atttgaggat gatgtcctgc ttggcaaaga cgcagaaaag ttccttgccg aagatacttg
     6001 gttggaagag cgttttgata aggattctgc ctttatcgtt cgtttggaaa cgatgtttgc
     6061 gaaagttatt gtcagaccgg ataaagtcct gaattatgag aaccggtcat ttcctttgct
     6121 ggagagcgaa cattggggga cggctggcta tatcatttcg cgtgaggcga tgcggttttt
     6181 cttggaaagg tttgccgttt tgccggcaga gtggattaaa gcggtagatt ggatgatgtt
     6241 tacttatttc tttgataagg aggggatgcc tgtttatcag gttaatcccg ccttatgtac
     6301 ccaagaattg cattatgcca agttcctcag taaaaacagt atgttgggta gcgatttgga
     6361 aaaagatagg gaacaagaaa gaagacaccg ccgttcgttg aaggtgatgt ttgacttgaa
     6421 gcgtgctttg ggtaaattcg gtagggaaaa gaagaaaaga atggagcgtc aaaggcaggc
     6481 ggagcttgag aaagcttacg gcaggcgggt catatcgttc aaatagtttg tgtaaaatat
     6541 agcggattaa aattagaaat ggatacactg tcattcccgc gcaggcggga atctagt
//
LOCUS       DAXIFS010000102         6487 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.102, whole genome shotgun sequence.
ACCESSION   DAXIFS010000102 DAXIFS010000000
VERSION     DAXIFS010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6487
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.102"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..373)
                     /locus_tag="ACFOCA_001378"
     CDS             complement(<1..373)
                     /locus_tag="ACFOCA_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6988086.1"
                     /translation="MKADIQTELTQALLSHEKVWANEEKTILAKNILLDLVEKTDPAI
                     IGLLLGNDELKRHFFVEVNGVLVFKLQDFRFFLDKHSVNNSYTKYANRIGLTDGNRFL
                     KDSSDIVLDFPFKDCVLNGGQS"
     gene            complement(664..1596)
                     /gene="truB"
                     /locus_tag="ACFOCA_001379"
     CDS             complement(664..1596)
                     /gene="truB"
                     /locus_tag="ACFOCA_001379"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFC6988087.1"
                     /translation="MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHT
                     GVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARAD
                     ISLAEFQTACQALTGNIRQVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDI
                     AEFDAPKAVISVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEA
                     LANLNETERDSLLLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT
                     ENGRFVGLAEYQKEICRLKALRLMNTAVKNTGCV"
     gene            complement(1629..2000)
                     /gene="rbfA"
                     /locus_tag="ACFOCA_001380"
     CDS             complement(1629..2000)
                     /gene="rbfA"
                     /locus_tag="ACFOCA_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFC6988088.1"
                     /translation="MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVE
                     VTRDYSHATVFYTILNQDAREITEEVLEHARGHLRSELAKRIKLFKTPELHFKYDESL
                     ERGLNLSALIDQVAAEKPVED"
     gene            2191..3435
                     /gene="clpX"
                     /locus_tag="ACFOCA_001381"
     CDS             2191..3435
                     /gene="clpX"
                     /locus_tag="ACFOCA_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFC6988089.1"
                     /translation="MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHED
                     GNDGTPSESAGGEPEESGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHP
                     KAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
                     IITKLLGKCDFDVEKAQRGIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSK
                     DENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVK
                     QYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLKGL
                     KKVVVGKAVIEEGREPELVFEP"
     gene            complement(3538..4734)
                     /locus_tag="ACFOCA_001382"
     CDS             complement(3538..4734)
                     /locus_tag="ACFOCA_001382"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFC6988090.1"
                     /translation="MQNYLTPNFAFAPMIPERASGSRVWDTKGREYIDFSGGIAVNAL
                     GHCHPALVDALNAQMHKLWHISNIYTTRPAQELAQKLVANSFADKVFFCNSGAEANEA
                     ALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVP
                     FNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCDRHNALLILDEVQT
                     GMGHTGRLFAYEHYGIVPDILSSAKALGCGFPIGAMLATEKIAAAFQPGTHGSTFGGN
                     PMACAVGSRAFDIINTPETLNHVREQGQKLQTALLDLGRKTGLFSQVRGMGLLLGCVL
                     DEAYRGRASEITAAALKHGVMILVAGADVLRFAPSLLLNDEDMAEGLRRLEHALTEFA
                     ATSDNP"
     gene            5138..5638
                     /locus_tag="ACFOCA_001383"
     CDS             5138..5638
                     /locus_tag="ACFOCA_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988091.1"
                     /translation="MNAMPQTAAQNETLHTCSIIVDDAQDFSPMLLDAGRDDTLISES
                     MIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKT
                     ANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRK
                     LHTLPL"
     gene            5723..6277
                     /locus_tag="ACFOCA_001384"
     CDS             5723..6277
                     /locus_tag="ACFOCA_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988092.1"
                     /translation="MKKIIASALIATFALAACQDDTQARLEQQQKQIEALQQQLAQQA
                     DDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAG
                     AFIGNALANKFTRAGNQDSPVARRARAAYHQSAHPNARTSRDLNTRSLRAKQQAAQAQ
                     RYRPTTRPPANYRRPAMRGFGRRR"
BASE COUNT         1569 a         1699 c         1705 g         1514 t
ORIGIN      
        1 tgctttgccc gccattcaat acgcaatctt taaacggaaa atccaacaca atatccgaac
       61 tgtctttcaa aaagcggttg ccgtccgtca aaccaatgcg gttggcgtat tttgtgtagg
      121 aattattgac gctgtgtttg tccaagaaaa aacgaaaatc ctgcaattta aacaccaaaa
      181 caccattcac ttccacaaaa aaatggcgtt ttaactcatc attccccaat aacaaaccga
      241 taatggccgg gtcggttttt tccaccaaat ccaacagaat gtttttggct aaaatggttt
      301 tttcttcgtt cgcccatact ttttcgtgtg atagcagggc ttgggttaat tcggtttgaa
      361 tgtctgcctt catcgttata aatcctcatc agtcatttta atgtgccatt cttgtgtaac
      421 ggcaaatggt tttgcaaata aatactaata aaatcaatca tttgttatct ttgctgtttc
      481 cgggggcgtt cgcaaagttg caataagcgg ggtgggtgtc cgagtgtgtc gtgattttgc
      541 ggaaatatag tggattaaca aaaatcagga caaggcgacg aagccgcgga cagtacaaat
      601 agtacggcaa ggcgaggcaa cgctgtactg gtttaaattt aatccactat atcaacacat
      661 tattcaaaca cagcccgtat ttttaaccgc cgtgttcatc aggcgcaagg ctttcagacg
      721 gcatatttct ttttgatatt ccgccagtcc gacaaagcgg ccgttttccg tgtaaacgcg
      781 taccggcgta tcggaaggca ggtcttcctc gaaacgcggc cgttgcccgc attggagcat
      841 atggacggca taatcgttta aaacggtttg gggaaaatgg gcaaccaata cgtcgcaggg
      901 cagcagcaag ctgtcgcgtt ctgtttcgtt caaatttgcc aaggcttcga gcgtgtggct
      961 ttgggcgatg gtaaagccgg cggtttcggt gcggcgcagg gcggtcaggt gggcgaacgt
     1021 gccgatgtgt ttggcgatgt cttcgctgag ggtgcggata taggtgcctt tgctgcaacg
     1081 cacgcttatc acggctttgg gtgcgtcaaa ttcggcaata tcgatggcgt aaacggtaat
     1141 atcgcgcggc ttgcgttcga tgacgatgcc tttgcgggcg tattcgtaca gcggtttgcc
     1201 ttcgtgcttg agcgcggaaa acattggcgg cacttggcgg atgttgcctg tcagtgcttg
     1261 gcaggccgtc tgaaattcgg ctaaggaaat atcggcgcgg gcggtggcaa tgatttcgcc
     1321 ttcggcatca cccgtgctgc tggcttcgcc gagtttcagc gtggcggtgt aggctttgtc
     1381 ggcatccagc aggtattggg cgaacttggt cgcttcaccg aagcagacgg gcaaaagtcc
     1441 ggttgccaaa gggtcgagca cgccggtatg tccggctttt tcggcatgaa acaaacgccg
     1501 cgctttttgc agcgcggtgt tgctggaaag gccttcgggt ttgtccaaga gcaaaacacc
     1561 gttgacggca cgtttttggg gtttgcctgt attcatggtt cgatgttcgg acggcatggg
     1621 catatccgtc agtcttcaac cggtttttcc gccgctactt ggtcgataag ggcggacagg
     1681 ttcaaaccgc gttccaaaga ttcgtcgtat ttgaaatgca gttcgggcgt tttgaacagc
     1741 ttgatgcgtt tggccaattc gctgcggagg tgtccgcgcg cgtgttccag cacttcttcc
     1801 gtaatttcgc gcgcgtcttg gtttaaaatg gtgtagaaca cggtggcgtg gctgtaatcg
     1861 cgggtaactt cgacttcgtt gacggtaatg aagccggcgc gcgggtcttt cagtccggta
     1921 cggacgagtt cggcaagctc gcgcatgatt tgttctttga cacggtcttg gcgggcgtag
     1981 ccgcgttggg gttttctcat gaatatcctc agatttcaga tttggtttca gacggcattt
     2041 ttgccgccgg ggcggttgcg aaagggcgta ttatagccta atcggcggga ttttaaggta
     2101 atacattgat aagaacggat atagttatta tacttggcaa cccgaacggc acgtgccgtt
     2161 ttctgtaacg catacattgt aaagaaagcc atgtccaacg aaaaccgtac ctgttccttt
     2221 tgcggaaaat ccaaatcaca cgtcaaacat ttaattgagg gcgaaaacgc ctttatctgt
     2281 gacgaatgcg tctcaaactg tattgaaata ttgcatgaag acggaaatga cggcacacct
     2341 tcggaaagtg ccggagggga gccggaagaa tccggcaagc tgcccacgcc cgccgaaatc
     2401 gtcgccaacc tcaacgacca cgttatcggt caggaacaag ccaagaaagc cttggcggtg
     2461 tcggtgtaca accattacaa acgcctgcgc cacccgaaag ccggagctaa tgtcgaattg
     2521 tcgaaatcca acatcctgct tatcggcccg accggatcgg gtaaaaccct gctggcgcaa
     2581 tctttggcgc gtaaactgga cgtaccgttc gtgatggcgg atgcaaccac gctgactgaa
     2641 gcaggttatg tcggcgaaga tgtcgagcaa atcatcacca aactgttggg caaatgtgat
     2701 ttcgatgttg aaaaagccca gcgcggcatc gtctatatcg acgaaatcga taaaatttca
     2761 cgcaaaggcg acaatccgtc catcacgcgc gacgtgtccg gcgaaggtgt gcaacaagcc
     2821 ttgctgaaac tgattgaagg tacggtggca agtgttccgc cccaaggcgg ccgcaagcat
     2881 ccgaatcagg aatttatcaa cgtcgatacc accaacatcc tgtttatctg cggcggtgcg
     2941 tttgcaggct tggaaaaagt catccgccag cgcaccgaga aaggcggtat cggtttcggt
     3001 gcgtccgttc acagcaagga cgaaaatgcc gacattacca agctgttcgg catcgtcgaa
     3061 ccggaagatt taatcaaatt cggtctgatt ccggaattaa tcggacgttt gcctgtgatt
     3121 gcaacgttag aagaactgga tgaggacgcg ctgattaata ttttgaccga gccgaaaaat
     3181 gctttggtca agcagtatca agccttgttc ggtatggaaa atgtcgaact ggagtttgaa
     3241 gaaggcgcat tgcgttccat cgcgcgtcag gcaatggagc gcaaaaccgg cgcgcgcggc
     3301 ctgcgttcca tcgtcgaacg ctgcctgttg gatacgatgt accgcctgcc cgatttgaaa
     3361 ggcttgaaaa aagtggtggt cggtaaggca gtcatcgaag agggcaggga accggaattg
     3421 gtgttcgagc cctgatggca aacaaaaccg cttcggaacg tcgaaccacg tttccgaagc
     3481 ggttttttgt ttttgatgcc gtctgaagcc ttcccgcctt cagacggcat ttgagtttta
     3541 cggattgtct gatgtcgcgg caaattccgt cagcgcgtgt tccaaacgtc gcaaaccttc
     3601 cgccatatcc tcatcgttca acagtagcga aggcgcgaaa cgcaatacgt ccgcacccgc
     3661 aaccaaaatc atcacgccgt gtttcaaggc ggcggcggtg atttcggatg cgcgtccgcg
     3721 ataggcttcg tccaacacgc agccgagtag cagccccatc ccgcgaactt gtgagaacaa
     3781 gcccgttttc ctgcccaaat ccagcaatgc cgtctgaagt ttctgcccct gttcacggac
     3841 atggtttaaa gtttcgggcg tattgatgat gtcgaatgcg cggctgccga ccgcacacgc
     3901 catcgggttg ccgccgaaag tcgagccgtg cgtgcccggt tggaaggcgg cggcaatctt
     3961 ttctgtcgcc agcatcgcgc cgatcggaaa gccgcagccc aaggcttttg ccgaactcaa
     4021 aatatcggga acaatgccgt aatgttcata ggcaaacagc ctgcccgtat gccccatccc
     4081 ggtttgaact tcgtccaaaa tcaacaacgc attgtgccgg tcgcacagac ggcgcgcggt
     4141 ttgcaaatat tccgcagtgg cgggcaggat gccgctttcg ccctgtatcg gctcgatgat
     4201 gaccgcgcag gtctgttcgc cgacggcagc ttccagcgcg gcaatatcgt tgaacggaac
     4261 gtgcgtaatg ccttgcggca ggggtgcata atccttgctg tatttcggct gaccgccgac
     4321 ggacacggta aacagcgtgc gtccgtgaaa actgttgata caggcgacga tttcgctttt
     4381 tcctccgccg aaacggtcgc gggcgtattt cctcgccagc ttcaacgccg cctcattcgc
     4441 ttccgcgccc gagttgcaga aaaaaacctt gtcggcaaaa ctgtttgcaa ccaatttttg
     4501 cgccaattcc tgcgccggac gcgtcgtata gatattggaa atgtgccaca gcttgtgcat
     4561 ctgcgcgttt aaagcatcga caagggcagg gtggcagtgt cccagcgcat tgacggcgat
     4621 accgcctgaa aaatcaatat attcacgccc tttcgtatcc caaacgcggc tgcctgaagc
     4681 gcgttcggga atcatcgggg caaaggcgaa attgggggtc agatagtttt gcataattgc
     4741 tcctgattgc ggttttgctc gggattatgc accgtttttc aaagcagata aagggaaatt
     4801 gccgacaata tcgggcagcg gtaaaaataa accgaaatat tttcaatcgg atagatgaaa
     4861 aatcaaaaaa atttcgataa aatgcttgag gcgcggcagc gttttgattt agaatctccc
     4921 caatattttt atcttcagac ggcatttcat catgcaaggc aaaaaattta caaccgctta
     4981 ttgctattgg taccacacag acgtgcggta cttttttgcg cttgcttgaa atccatccca
     5041 tacgcaaaac aggccgctcg aaaacggggc ggcttttttg ttaccttcac acaggtcgcc
     5101 cgattcggca acacacgaca gaatcaggaa aatgaccatg aatgcaatgc cccaaaccgc
     5161 cgcacaaaac gaaaccctgc acacttgtag cattattgtc gatgatgcac aggatttttc
     5221 ccccatgctt ctcgatgcag ggcgggacga cacacttatc agcgaatcga tgattccgca
     5281 aatccgcact gttgccgccc tgatagccgc cgaacggcac gacttcagcc gcagcagccc
     5341 cgccgagttt accgatgccg ccgatttttt tgccgcacgg attctcgtat tgggcgtgcg
     5401 acgcttccat ctggacgtat cgctgcttca gattttgaaa accgccaaca gccgcgcccg
     5461 ccgctttgcc gaaaaacacc gcctgttttt cacacccgca caagccgaat tgagcctgaa
     5521 caaacacaaa aaccgccgcc tgctgaccgt agaaaccgaa cacgaagtcg aaaacaaagg
     5581 caacccagtc gccaacagcc tcgcatttgt ccgcaaactg cacaccctgc ccctgtaaac
     5641 atcacgattt gtcggcagaa tgcttgccaa aattcccgac ggcgatacaa taaaaccgat
     5701 tttccaccca aacaggacac acatgaaaaa aatcatcgcc tccgcgctta tcgcaacatt
     5761 cgcactcgcc gcctgccaag acgacacgca ggcgcggctc gaacagcagc agaaacagat
     5821 tgaagccctg caacagcagc tcgcacagca ggcagacgat acggtttacc aactgactcc
     5881 cgaagcagtc aaagacacca ttcctgccga agcacaggca aacggcaaca acgggcaacc
     5941 cgttaccggt aaagacgggc agcagtatat ttacgaccaa tcgacaggaa gctggctgct
     6001 gcaaagccta gtcggcgcgg cggcaggcgc gtttatcggc aacgcgctgg caaacaaatt
     6061 cacacgggca ggcaaccaag acagtcccgt cgcccggcgc gcgcgtgcag cctaccatca
     6121 gtccgcacat cccaatgcgc gcaccagcag ggatttgaac acgcgcagcc tccgtgcaaa
     6181 acaacaggcg gcgcaggcgc agcgttaccg cccgacaacg cgcccgcccg ccaattaccg
     6241 ccgccccgcc atgcgcggtt tcggcagaag gcggtaaatc cggcgtgcca atgccgtctg
     6301 aagggctttc agacggcatt tttgcatttg ttaggggcat tgttatgttg ccgtttgatt
     6361 tttagacggc attttgtttc caagcgtttg atgtcgggat ggcaattctg atttacgtgc
     6421 gttggcaggg cggcattgtc atgccgccgt tgggttttca gacggcatca tatcgaaccg
     6481 tcagacc
//
LOCUS       DAXIFS010000103         6456 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.103, whole genome shotgun sequence.
ACCESSION   DAXIFS010000103 DAXIFS010000000
VERSION     DAXIFS010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6456
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.103"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            75..2738
                     /gene="aceE"
                     /locus_tag="ACFOCA_001385"
     CDS             75..2738
                     /gene="aceE"
                     /locus_tag="ACFOCA_001385"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HFC6988093.1"
                     /translation="MSTQLHDVDPIETQEWLDALSSVLEYEGGERAQYLLENLVKYCR
                     DKGVRMPHGTTTPYLNTVSVENEKGIPGDQNIEHRIRAFVRWNAAAIVLRAGKKDLEL
                     GGHIASFQSAATMYEVGFNHFWKAKGEGEEGDLVFFQGHVAPGIYARAFVEGRLTEDQ
                     LNNFRQEVDGHGLPSYPHPHLLPDFWQFPTVSMGLGPIMAIYQARFLKYLESRGLAKT
                     KGRKVWCFCGDGEMDEPESQGAIALAAREGLDNLIFVINCNLQRLDGPVRGNGKIIQE
                     LEGNFAGAGWNVVKVIWGRRWDRLLAKDKDGILRQRMEECLDGDYQTYKSKDGAYVRE
                     HFFNTPELKALVADMTDEQLWALNRGGHDPQKVYNAYDRAANHADGKPTVILAKTIKG
                     YGMGASGEGQNVAHQAKKMDKASLKQFRDRFDIPVTDEQIESGDLPYLTFAPDTEEYK
                     YLHARRDALGGYLPQRKPTQEVLEVPELSAFDAQLKSSGEREFSTTMAFVRILSTLLK
                     DKKIGKRVVPIVPDESRTFGMEGMFRQYGIWNPKGQQYTPQDKDQLMFYKESVDGQIL
                     QEGINEPGAMADWIAAATSYANSNFAMIPFYIYYSMFGFQRIGDLAWAAGDMHARGFL
                     LGGTAGRTTLNGEGLQHEDGHSHIQADLIPNCVSYDPTFQYEVAVIVQDGLRRMYANN
                     EDVFYYITLMNENYTHPDMPEGAEQDILKGMYLLKAGGKGDKKVQLMGSGTILQEVIA
                     GAELLKADFGVEADIWSCPSFNLLHRDAVEVERFNRLHPLEAEKVPFVTSKLQGHDGP
                     VIAATDYIRSYADRIRAYIPNDYHVLGTDGFGRSDSRANLRRFFEVDRYNVAVAALSA
                     LAEQGKVSKETVQQAIEKYGIKADSAPSWKR"
     gene            2888..4489
                     /gene="aceF"
                     /locus_tag="ACFOCA_001386"
     CDS             2888..4489
                     /gene="aceF"
                     /locus_tag="ACFOCA_001386"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HFC6988094.1"
                     /translation="MSIVEIKVPDIGGHENVDIIAVEVKAGDTIAVDDTLITLETDKA
                     TMDVPADAAGVVKEVKVKVGDKISEGGVILTVETGAAAAEAAPAAAEAQPAPAAAPVA
                     AGGATVQVAVPDIGGHTDVDVIAVEIKVGDTVAEDDTLITLETDKATMDVPCTAAGVV
                     KAVFLKVGDKVSEGSAIIEVETAGSAAAAPAPAAQAAAPAPAAAPVPAAAAAPAPSAP
                     AAAKIDEAAFAKAHAGPSARKLARELGVDLGQVKGTGLKGRIMGDDIKAFVKSVMQGG
                     AAKPAAASASLGGGLDLLPWPKVDFSKFGNVEVKELSRIKKISGQNLSRNWVVIPHVT
                     VHEEADMTELEEFRKQLNKEWEREGVKLSPLAFIIKASVSALKAFPEFNASLDGDNLV
                     LKNYFNIGFAADTPNGLVVPVIKDVDQKGLKQISQELTELSKKAREGKLKPQEMQGAC
                     FTISSLGGIGGTGFTPIVNAPEVAILGVCKSQIKPVWNGKEFAPRLMCPLSLSFDHRV
                     IDGAAGMRFTVFLAKLLKDFRRITL"
     gene            4566..6353
                     /gene="lpdA"
                     /locus_tag="ACFOCA_001387"
     CDS             4566..6353
                     /gene="lpdA"
                     /locus_tag="ACFOCA_001387"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6988095.1"
                     /translation="MSLVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKA
                     TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGAAASPKAEAPVAAPAQEAPKAA
                     APAPQAAQFGGSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV
                     GCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKNGVVSRLTGGLAGMAK
                     GRKVDVIQGDGQFLDSHHLEVSLTAGDAYELAAPTGEKKIVAFKNCIIAAGSRVTKLP
                     FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ
                     GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV
                     AAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHE
                     GHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASGRKITKANFPWAASG
                     RAIANGCDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIH
                     PHPTLGESIGMAAEVALGTCTDLPPQKKK"
BASE COUNT         1624 a         1840 c         1701 g         1291 t
ORIGIN      
        1 tttcacaaac gaaaataaag gggttggcta caccctccct gccgattaaa cactcaacat
       61 aaaggataga tactatgtcc acccaattac acgatgttga ccctatcgaa acccaagagt
      121 ggctggacgc gttaagctcc gtcctcgaat atgaaggcgg cgaacgcgcg caatacctct
      181 tggaaaacct ggtcaaatac tgccgcgaca agggcgtacg tatgccacac ggcacgacca
      241 caccgtattt gaataccgtt tcggttgaaa acgaaaaagg cattccgggc gaccaaaaca
      301 tcgaacaccg catccgcgca ttcgtgcgct ggaacgccgc cgccatcgta ttgcgcgccg
      361 gcaagaaaga tttggaactg ggtgggcaca tcgcatcttt ccaatctgcc gccaccatgt
      421 acgaagtcgg tttcaaccac ttttggaaag ccaaaggcga aggcgaagaa ggcgatttgg
      481 tcttcttcca aggtcacgtc gccccgggca tctatgcacg cgcattcgtc gagggccgtc
      541 tgaccgaaga ccagctgaac aacttccgcc aagaagtgga cggacacggt ctgccttcct
      601 atccgcaccc ccacctcttg cccgactttt ggcagttccc gaccgtatcc atgggcttgg
      661 ggcccatcat ggcgatttat caggcgcgtt tcctgaaata cttggaatcg cgtggtttgg
      721 caaaaaccaa aggccgtaaa gtatggtgtt tctgcggcga cggcgaaatg gacgaacccg
      781 aatctcaagg tgcaatcgca ctggctgcac gcgaaggctt ggacaacctg attttcgtca
      841 tcaactgcaa tctgcaacgc ttggacggtc cggtacgcgg caacggcaaa atcatccaag
      901 aattggaagg caactttgcc ggcgccggct ggaatgtcgt caaagtcatt tggggccgcc
      961 gctgggaccg cctcttggcg aaagacaaag acggtatcct gcgccaacgt atggaagaat
     1021 gtttggacgg tgactaccaa acttacaaat ccaaagacgg cgcgtatgtg cgcgaacact
     1081 tcttcaatac gcccgaactg aaagcattgg ttgccgatat gaccgatgag caactctggg
     1141 cattgaaccg cggcggccac gacccgcaaa aagtgtacaa cgcctacgac cgcgcagcga
     1201 accatgccga cggcaaacct accgtcatct tggcgaaaac cattaaaggt tacggtatgg
     1261 gcgcatccgg cgaaggtcag aacgttgccc accaagccaa aaaaatggac aaagcgtccc
     1321 tgaaacaatt ccgcgaccgc tttgacattc cggttaccga cgaacaaatc gaaagcggcg
     1381 atctgcctta cctgactttt gcccccgata cggaagaata caaatacctg cacgcacgcc
     1441 gcgatgcttt gggcggctac ctgccgcaac gcaaaccgac gcaggaagta ttggaagtgc
     1501 ccgagctgtc agcattcgac gcacaactca aatccagcgg tgaacgcgag ttctcgacca
     1561 cgatggcatt cgtccgcatc ctgtccactt tgctgaaaga caaaaaaatc ggcaaacgcg
     1621 tcgtacctat cgttcccgac gaaagccgta ctttcggcat ggaaggtatg ttccgccaat
     1681 acggtatttg gaatccgaaa ggtcagcaat atacccctca agacaaagac caactgatgt
     1741 tctataaaga atccgttgac ggtcaaatct tgcaagaagg tattaacgaa ccgggcgcga
     1801 tggccgactg gattgcggct gcaaccagct acgccaacag caacttcgcg atgattccgt
     1861 tctacattta ctattctatg ttcggtttcc aacgtatcgg cgacttggct tgggcggcgg
     1921 gcgatatgca cgcgcgcggc ttcctgctgg gcggtactgc cggccgtacg acgctgaacg
     1981 gcgagggcct gcaacacgaa gacggccaca gccacatcca ggccgacctg attccgaact
     2041 gcgtatctta tgacccgact ttccaatacg aagtcgccgt catcgtacaa gacggtctgc
     2101 gccgtatgta tgccaataat gaagacgtgt tctactacat caccctgatg aacgagaact
     2161 acacccatcc ggatatgccc gaaggcgcag aacaagacat cttgaaaggt atgtacctgc
     2221 tgaaagccgg cggcaaaggc gataagaaag ttcaattgat gggctccggt accatcctgc
     2281 aagaagtcat tgccggtgcc gaattgctga aagccgactt cggcgtggaa gcagacattt
     2341 ggtcttgccc gtccttcaac ctgctgcacc gcgacgctgt cgaggtagaa cgcttcaacc
     2401 gcctgcatcc gctggaagcc gaaaaagtac ctttcgttac ttccaaattg caaggtcatg
     2461 acggtccggt tattgccgct accgactata tccgcagcta tgctgaccgt atccgcgcct
     2521 acatcccgaa cgactaccac gtcttgggta ctgacggctt cggccgctcc gacagccgcg
     2581 ccaacctgcg ccgcttcttt gaagtggatc gctacaacgt tgccgtggca gcattgagcg
     2641 cattggcgga acaaggcaaa gtcagcaaag aaaccgttca acaagccatt gagaaatacg
     2701 gcatcaaagc cgattcagct cctagctgga aacgctgatt gatgtttcag acggtctgtt
     2761 tgccccattc cgacatcagg ccgtctgaaa accgaatgcc cgaatggttt gagcagacaa
     2821 accgtaccga tgccgcctga agcagctttc agacggcatc caactgaaca agattaaagg
     2881 aactcaaatg agtatcgtag aaatcaaagt ccccgatatc ggcggtcacg aaaacgtcga
     2941 catcatcgcc gtagaagtta aagcgggcga caccatcgcc gttgacgaca ccctgattac
     3001 actggaaacc gacaaagcca cgatggatgt gcctgccgat gcggccggtg tcgtgaaaga
     3061 agtaaaagtc aaagtcggcg acaaaatctc cgaaggcggc gtaattttga ccgttgaaac
     3121 cggtgccgcc gctgccgaag ccgctcctgc tgctgccgaa gcacaacctg cacctgctgc
     3181 cgcacccgtt gccgcaggcg gtgcaaccgt tcaagtagcc gttcccgata tcggcggcca
     3241 taccgatgtg gatgtcatcg ccgttgaaat caaagtgggc gacaccgttg ccgaagacga
     3301 cacgctgatt actttggaaa ccgacaaagc gacaatggac gtaccttgta ccgctgccgg
     3361 tgtcgttaaa gccgtattct taaaagtcgg cgacaaagtg tccgaaggct ctgcaattat
     3421 cgaagtagaa accgccggct ctgccgcagc agcccctgcg cctgccgctc aagctgccgc
     3481 acccgcaccg gctgccgctc cggttccggc tgctgccgcc gcgcccgcac cttctgcacc
     3541 tgccgctgcc aaaatcgacg aggccgcttt cgccaaagca cacgccggtc cttccgcacg
     3601 caaactggcg cgcgaattgg gcgtggattt gggccaagtc aaaggcaccg gcttgaaagg
     3661 ccgtatcatg ggcgacgaca tcaaagcctt tgtgaaatcc gtgatgcagg gcggcgcggc
     3721 aaaacctgcc gcagccagcg catctttggg cggcggtctg gacttactgc cgtggcctaa
     3781 agtggacttc tccaaattcg gcaatgtcga agttaaagaa ttgtcccgca ttaagaaaat
     3841 ttccggtcaa aacctgtccc gcaactgggt tgtgattccc cacgttaccg tacacgaaga
     3901 agcggacatg accgagctgg aagaattccg caaacagctg aacaaagaat gggaacgcga
     3961 aggcgtgaaa ctgtccccgt tggcgttcat catcaaagcc tctgtttccg cgttgaaagc
     4021 attccccgaa ttcaacgcct cactggacgg cgacaacctg gtgctgaaaa actacttcaa
     4081 catcggtttc gcagccgata cgccgaacgg cttggttgtt cccgtcatca aagacgtgga
     4141 tcaaaaaggc ttgaaacaaa tcagccaaga attgaccgaa ttgtccaaaa aagcccgtga
     4201 aggcaagctc aaaccgcaag aaatgcaagg cgcgtgcttt accatttcca gcttaggcgg
     4261 catcggcggc acaggcttca cgccaattgt gaacgctccc gaagtcgcca tcttgggcgt
     4321 gtgcaaatcc caaatcaaac ctgtttggaa cggcaaagag tttgccccgc gcctgatgtg
     4381 cccgttgagc ctgtccttcg accaccgtgt catcgacggt gcggccggta tgcgcttcac
     4441 cgtattcttg gcgaagctgt tgaaagactt ccgccgcatt accctgtaac ccgatcggct
     4501 tcagacggca tagcggcctg tgccgtctga aaaggaagtt tgaacatcat tcagaaagat
     4561 gagacatgag cttagttgaa ttgaaagtgc ccgacattgg cggacacgaa aatgtagata
     4621 ttatcgcggt tgaagtgaat gtgggcgata ccatcgccgt tgacgacacc ctgattacct
     4681 tggaaaccga caaagcgacg atggacgtgc ctgccgaagt tgcgggcgtg gtcaaagaag
     4741 tgaaagtcaa agtcggcgac aaaatctccg aaggcggctt gattgtagtc gttgaagccg
     4801 aaggcgcggc tgcctctcct aaagccgaag cacctgttgc tgcccctgcg caagaagcac
     4861 ccaaagctgc cgctcccgct ccgcaagccg cgcaattcgg cggttctgcc gatgccgagt
     4921 acgacgtggt cgtattgggc ggcggtcccg gcggttactc cgctgcattt gctgctgccg
     4981 atgaaggctt gaaagtcgcc atcgtcgaac gttataaaac cttgggcggc gtttgcctga
     5041 acgtcggctg tatcccttcc aaagccctgt tgcacaatgc cgccgttatc gacgaagtgc
     5101 gccacttggc tgccaacggt atcaaatacc ccgagcctga actcgacatc gatatgctgc
     5161 gcgcctacaa aaacggcgtg gtttcccgcc tcaccggcgg tttggcaggt atggcgaaag
     5221 gccgtaaagt ggatgttatc caaggcgacg gccaattctt agattcgcac cacttggagg
     5281 tatcgctgac tgccggcgac gcgtacgaac tggcagcccc taccggcgag aaaaaaatcg
     5341 ttgccttcaa aaactgtatc attgcagcag gcagccgcgt taccaaactg cctttcattc
     5401 ctgaagatcc gcgcatcatc gattccagcg gcgcattggc tctgaaagaa gtaccgggca
     5461 aactgctgat tatcggcggc ggtattatcg gtctcgagat gggtacggtt tacagcacgc
     5521 tgggttcgcg tttggatgtg gttgaaatga tggacggcct gatgcaaggc gcagaccgcg
     5581 atttggtaaa agtatggcaa aaacaaaacg aataccgttt tgacaacatt atggtcaaca
     5641 ccaaaaccgt tgcagtcgag ccgaaagaag acggcgttta cgttaccttt gaaggtgcaa
     5701 atgcgcctaa agagccgcaa cgctacgatg ccgtattggt tgccgccggc cgcgcgccca
     5761 acggcaaact catcagcgcg gaaaaagcag gcgttgccgt aaccgatcgc ggcttcatcg
     5821 aagtggacaa acaaatgcgt accaatgtgc cgcacatcta cgccatcggc gacatcgtcg
     5881 gtcagccgat gttggcgcac aaagccgttc acgaaggcca cgttgccgcc gaaaactgcg
     5941 ccggccacaa agcctacttc gacgcgcgcg tgattccggg cgttgcctac acttcccccg
     6001 aagtggcgtg ggtgggcgaa accgagttgt ccgccaaagc atccggccgc aaaatcacca
     6061 aagccaactt cccgtgggcg gcttccggcc gtgcgattgc caacggttgc gacaacggct
     6121 ttaccaagct gattttcgat gccgaaaccg gccgcatcat cggcggcggc attgtcggtc
     6181 cgaacggtgg cgacatgatc ggcgaagtct gccttgccat cgaaatgggc tgcgacgcgg
     6241 cagacatcgg caaaaccatc cacccgcacc cgaccttggg cgaatccatc ggtatggctg
     6301 cggaagtggc attgggtact tgtaccgacc tgcctccgca aaagaaaaaa taaatccgac
     6361 tgaataaaca gccgataagg tttatttgag caaatgccgt ctgaaatgtt cagacggcat
     6421 tttctatttt acagcggatt aaaatatttc ttccgg
//
LOCUS       DAXIFS010000104         6421 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.104, whole genome shotgun sequence.
ACCESSION   DAXIFS010000104 DAXIFS010000000
VERSION     DAXIFS010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6421
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.104"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            176..1234
                     /gene="alr"
                     /locus_tag="ACFOCA_001388"
     CDS             176..1234
                     /gene="alr"
                     /locus_tag="ACFOCA_001388"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFC6988096.1"
                     /translation="MRPLNVQIRLGNLRHNYQILKEMHGGKLLAVVKADAYGHGAVRC
                     AFALADLADGFAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQ
                     WQLEALLIRHWKKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFS
                     CADEPESGMTEIQMEAFDLGTEGLEGEESLANSAAILNVPEARRDWGRAGLALYGISP
                     FGGSDDRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRR
                     APSNSPVAVDGKLTRVIGRVSMDMMTIELDASQEGLGHEVELWGDTVNINTVAEAAGT
                     IPYELMCNIKRAKFTYIE"
     gene            complement(1298..2653)
                     /locus_tag="ACFOCA_001389"
     CDS             complement(1298..2653)
                     /locus_tag="ACFOCA_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HFC6988097.1"
                     /translation="MSIQSGEILETVKMVADQNFDVRTITIGIDLHDCISTDIDVLNQ
                     NIYNKITTVGKDLVATAKYLSAKYGVPIVNQRISVTPIAQIAAASKADSYVSVAQTLD
                     KAAKAIGVSFIGGFSALVQKGMSPSDEVLIRSIPEAMKTTDIVCSSINVGSTRAGINM
                     DAVKLAGETIKRTAEITPEGFGCAKIVVFCNAVEDNPFMAGAFHGSGEADAVINVGVS
                     GPGVVKAALENSDATTLTEVAEVVKKTAFKITRVGELIGREASKMLNIPFGILDLSLA
                     PTPAVGDSVARILEEMGLSVCGTHGTTAALALLNDAVKKGGMMASSAVGGLSGAFIPV
                     SEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDMIAVPGDTPAHTISGIIADEAAIGMI
                     NSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKEGSCEVFVNRGGRIPAPVQSMK
                     N"
     gene            complement(2669..2941)
                     /locus_tag="ACFOCA_001390"
     CDS             complement(2669..2941)
                     /locus_tag="ACFOCA_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HFC6988098.1"
                     /translation="MNNSVITVIGKDRVGIVYDVSKILAENRINILNISQQLMDDFFT
                     MIILVDTSKCPKSRQEVLDLFAEESKKLALDIRMQNEEIFQAMHRI"
     gene            complement(3067..3804)
                     /locus_tag="ACFOCA_001391"
     CDS             complement(3067..3804)
                     /locus_tag="ACFOCA_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HFC6988099.1"
                     /translation="MKKLSRIVFSTVLLGFSAALPAQTYSVYFNQNGKLTATMSSAAY
                     IRQYSVAEGIAHAQDFYYPSMKKYSEPYIVASTQIKSFVPTLQNGMLILWHFNGQKKM
                     AGGFSKGKPDGEWVNWYPNGKKSAVMPYKNGLSEGTGYRYYRNGGKESEIQFKQNKAN
                     GVWKQWYADGNIKTEMVMVNDEPAKILTWDESGRLLSELSIRHHQRNGVVLEWYEDGS
                     KKSEAVYQDDKLVRKTQWDKDGYLIEP"
     gene            complement(4085..4984)
                     /gene="prmB"
                     /locus_tag="ACFOCA_001392"
     CDS             complement(4085..4984)
                     /gene="prmB"
                     /locus_tag="ACFOCA_001392"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6988100.1"
                     /translation="MFNQAAQELTTIRDILRFAVSRFNEAGLFFGHGTDNAHDEAAYL
                     ILHTLNLPLDMLAPYLDAKLLEAEKEEVLAVIERRAVEHIPAAYLTHQAWQGEFDFYV
                     DERVIIPRSFIYELLGNGLRPWIEYDELVHNALDLCTGSGCLAIQMAHHYPDAQIDAV
                     DVSLDALEVAGINVEDYGLEERIRLIHTDLFEGLEGTYDLIVSNPPYVDAESVELLPE
                     EYLHEPELALGSGADGLDATRQILLNAAKFLNPKGVLLVEIGHNRDVLEAAYPELPFT
                     WLETSGGDGFVFLLTREQLLGEE"
     gene            5129..5722
                     /locus_tag="ACFOCA_001393"
     CDS             5129..5722
                     /locus_tag="ACFOCA_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988101.1"
                     /translation="MADGMGNLIGWEKTGLVVGKQWITAKDDKVSDVCNANGEMGVIG
                     LYEPFSHGALTIPGHPNCRCEVVSVSGGELGEFAEKKELRKAAMQYARDNFIGKSYVN
                     ENSGHELKVTWQGVKHAASKANQAELSIMTKLDDLLRYAKYEGSYSDRKGHPNIIAAH
                     KYRAVAKVGNKSLNIGVIVREFPDDHKHYDHFILKDE"
     gene            5834..>6421
                     /locus_tag="ACFOCA_001394"
     CDS             5834..>6421
                     /locus_tag="ACFOCA_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HFC6988102.1"
                     /translation="MTKLYAEIAKMETQDDDTVKVWGYASSEEIDSDGEVIAAAAMKA
                     AIPDYMKFGAGREMHGSNAAGTAIEINVEDDGITFFGAHIIDPVVVSKVKTGVYKGFS
                     IGGSVTARDDLNKSQITGLKLTEISLVERPANPDAVSTCFKADKGAETVNNDTEHNAT
                     YFSHFPSKQKSTDGGRCPFLYRFPYFLSAGRAGFAG"
BASE COUNT         1719 a         1621 c         1502 g         1579 t
ORIGIN      
        1 atttgggaaa gcgattatat caggaaaagc aaaccgcctt cctacctgaa aactgctgct
       61 tcggcttgaa gacacaaggg tctttaatat tttaaaagcc ttgccgttgg attataattc
      121 cctaattgat ttcttaattt tgctaataaa cacttgtttg gtaaggaatg aatttatgcg
      181 tcctttgaac gtgcagatca ggttgggcaa ccttaggcac aattatcaga ttttaaagga
      241 aatgcacgga ggcaagctgt tggcggtagt gaaggccgac gcatacggac acggtgcggt
      301 cagatgtgct ttcgcgctgg cagacttggc agacggcttt gccgtggcga caatcgatga
      361 aggaatcagg ctgcgggaga gcggcattac ccatccgatt gtccttttgg aaggcgtatt
      421 tgaagcatca gagtacgaag cggtcgaaca atactcgctt tggccggcag tcggaaacca
      481 atggcagctt gaggctttgc tgatccgcca ttggaaaaaa cccgtcaaag tctggttgaa
      541 aatggattcg gggatgcacc gtaccggttt tttccctcat gattacgctt cggcatatgc
      601 ggcattgaaa cagtcggaat atgtggacag tattgtcaaa ttctcgcatt tctcctgtgc
      661 ggacgaaccc gaaagcggta tgacggaaat acagatggaa gcattcgatt tgggtacgga
      721 agggctggaa ggcgaagaaa gccttgccaa ttcggcggct attttgaatg ttcccgaagc
      781 acgcagggat tgggggcgcg cgggcttggc gttatacggc atttccccgt tcggaggcag
      841 cgatgacagg ctgaaacccg tgatgaggct ttcaacccgt atttttggcg aacgcgtttt
      901 acagccgcac tcccctatcg gttatggcgc aacattttat accagcaaat ctacgcgcgt
      961 cggtctgatt gcctgcggtt atgcggacgg ttatccgcgc cgcgccccaa gcaattcccc
     1021 cgtcgctgtc gacggcaaat tgacccgggt catcggcagg gtctctatgg atatgatgac
     1081 catcgagctg gacgcttcgc aagaaggttt gggacacgag gtcgaactgt ggggcgatac
     1141 ggtcaacatc aatactgttg ccgaagcggc cggaaccatc ccttacgaat tgatgtgcaa
     1201 tatcaaacgt gcaaaattca cttatatcga gtaatcaagt ccaaacaaaa atgccgtctg
     1261 aagcctttca gacggcattt ccccatcaaa accgcaatca gtttttcatc gattgaaccg
     1321 gtgcgggaat cctgccgccc cggttgacga acacttcgca tgagccttct tttaccggca
     1381 ttacaggcgc gtagcccaac aggccgccga actcgacgct gtcgccgacg gtttttccgg
     1441 ttaccggaat aatgcgcacg gcagtggttt tgctgttgat catgccgatg gcggcttcgt
     1501 cggcgatgat gccggaaatg gtgtgtgcgg gcgtatcgcc agggacggca atcatgtcca
     1561 gcccgaccga gcagacggcg gtcatcgctt cgagtttatc caacgtcagc acgcctgctt
     1621 cggcggcggc aatcatacct tcgtcttcgg aaacggggat aaacgcgcca ctcaaaccgc
     1681 caaccgcgct cgaagccatc atgccgccct ttttcacggc atcgttcagc aatgccaaag
     1741 ctgctgttgt gccgtgcgta ccgcagacgc tcaaacccat ttcttcaaga atgcgcgcca
     1801 ccgagtcgcc gacggcaggg gtcggtgcca gcgacaagtc gagaatacca aacgggatat
     1861 tcagcatttt tgaggcttcg cggccgatga gttcgcccac gcgggtaatt ttgaaggcgg
     1921 ttttcttcac aacttcggca acttcggtca atgtcgttgc atccgaattt tccaacgcgg
     1981 cttttacgac acctgggccg gatacgccga cattaatcac agcatccgct tcgcccgatc
     2041 cgtgaaacgc acccgccata aacggattgt cttccaccgc attgcagaac acgacgattt
     2101 tcgcgcagcc gaaaccttcg ggcgtaattt cagccgtgcg tttgatggtt tcgcctgcca
     2161 gcttgaccgc atccatattg ataccggcgc gcgtactgcc gacattgatg gagctgcaca
     2221 cgatgtcggt ggtcttcatc gcttcgggaa tggaacggat taacacctcg tctgaaggcg
     2281 acatgccttt ttgcaccaac gcggaaaagc cgccgataaa ggacacgccg atggctttgg
     2341 cagccttatc caaagtttgc gccacgctga cgtaagaatc ggctttgctc gccgccgcga
     2401 tttgggcaat cggcgtaacg gaaatgcgct gattcacaat cggcacgccg tatttggcag
     2461 acagatattt tgccgtcgcc accaagtctt tgccgaccgt ggtgattttg ttgtaaatgt
     2521 tttggtttaa cacgtcgatg tcggtgctga tgcagtcgtg caaatcaatg ccgatggtaa
     2581 tggtgcgcac gtcaaaattc tggtcggcca ccattttgac ggtttctaaa atctcgccgg
     2641 attgaatact catggctctc cctccgactt aaatacggtg catggcttgg aaaatttctt
     2701 cgttttgcat acggatatca agcgcgagtt ttttgctctc ttccgcaaac aaatccaaaa
     2761 cctcctgccg agatttgggg catttcgagg tatccaccaa gataatcatg gtaaaaaaat
     2821 cgtccatcag ctgttggctg atattaagga tgttgattcg gttttccgcc aaaattttgg
     2881 aaacatcgta cacgatgccg acgcggtctt tgccgatgac ggtgatgact gaattgttca
     2941 caggcttact ccttgcagat atccgttaaa gtccgaaatt ataccaccgt tggattttga
     3001 agaaatattg tcaacaatat atacatacaa aatgccgtct gaaactattt cagacagcat
     3061 caagattcag ggttcgatta aataaccatc cttatcccac tgggttttcc tgaccaactt
     3121 gtcatcctga taaacagcct cgctcttttt agaaccatct tcataccact ccaaaaccac
     3181 cccgttgcgt tgatggtggc ggatagacag ttccgagagt aatcggccgc tttcatccca
     3241 agtcagaatt ttggcaggct catcgttgac cataaccatt tccgttttga tattgccgtc
     3301 ggcataccat tgcttccata cgccgtttgc cttattctgt ttaaactgga tttcgctttc
     3361 cttgccgccg ttacggtaat agcggtaccc cgtaccttca ctcaaaccat ttttataagg
     3421 cataacggca gattttttac cgttcggata ccagttgacc cactccccgt ccggcttacc
     3481 cttgctgaag ccccccgcca tttttttctg accattaaaa tgccacaaaa tcaacatacc
     3541 gttttgcagg gtaggcacaa aagatttgat ttgcgttgaa gcaacgatat aaggttcgga
     3601 atatttcttc atcgacggat aataaaaatc ctgcgcgtgc gcaataccct ccgccacact
     3661 atattgcctg atataagcgg cagaagacat cgtcgccgtc agtttcccgt tctgattaaa
     3721 ataaacagaa taggtctgcg ccggcaaagc ggccgaaaaa cccaacagga cagttgaaaa
     3781 tacaatccga gataattttt tcattgcaat agcgatataa aaacaaggct gtgttttagt
     3841 aatcttttga tttcaattat ttgcaaggga aaagacaatt attttccggt taggaataaa
     3901 cctattctat tgaatatatt gaagccaagt acgcctatca acactatatt aaaacactgc
     3961 caaaaacaat taacttataa acaatatggt aaggatttct ctgccaagca tcaaacccga
     4021 gacaacgtat cgtaaaaatg ccgtctgaaa acaaatcgtc ttcagacggc atttcccctt
     4081 caactcactc ttcacccaat aactgctcgc gcgtcaagag gaaaacaaaa ccgtcgcccc
     4141 cgctggtttc caaccaagta aaaggcaact ccggatacgc tgcttccaat acatccctgt
     4201 tatgcccgat ttccaccagc aatacacctt tgggattcag aaactttgcc gcattcagaa
     4261 gaatctgcct ggtggcatcc aacccgtccg ccccgctgcc caatgccaat tccggttcgt
     4321 gcaaatactc ttcaggcaat aactcaaccg attccgcatc cacataaggc ggattggaaa
     4381 caatcaaatc ataagtgcct tccaatcctt caaacaaatc cgtatgaata agccggatgc
     4441 gttcttccaa accataatct tcgacattaa tccctgccac ttccaaagca tccaagctca
     4501 catcaaccgc atcaatttgg gcatcaggat aatgatgcgc catctgaatg gcaaggcaac
     4561 cgcttccggt gcaaagatcc aaagcattat gcaccagctc atcgtattct atccaaggac
     4621 gaagtccgtt acccaacaat tcataaataa aagaacgagg tatgattacg cgctcatcca
     4681 catagaaatc aaactctccc tgccatgcct ggtgtgtcaa ataagcggct ggaatgtgtt
     4741 cgacagcacg acgctcaata accgccagca cttcctcttt ttcagcttcc aagagttttg
     4801 catcaagata tggggcaagc atatccaaag gcaaattcaa agtatgcaga atcaaataag
     4861 ccgcttcatc atgcgcatta tctgttccat gaccaaaaaa gagccctgcc tcattaaaac
     4921 ggctgactgc aaaacgtaaa atatcgcgga tagtcgtcaa ttcttgtgct gcctgattaa
     4981 acataatatg aaccattctg cgtatagata cttttaatta taacagaaac aacaagcaaa
     5041 ccttttcata tcgccaaata accacccaat ctacccatac aactacataa atgcccgcgc
     5101 gaaaaccatc gcccgaacgg aaacgacaat ggccgacggt atgggcaatc tgattggctg
     5161 ggaaaaaacg gggcttgttg tcggtaagca gtggataacc gcaaaagacg acaaggtgtc
     5221 cgatgtctgc aatgccaacg gcgagatggg cgtaatcggg ctttacgagc ctttctcaca
     5281 cggcgcattg acgatacccg gtcatccgaa ctgccgatgc gaggttgttt ccgtatcggg
     5341 tggcgaattg ggggaatttg ccgaaaaaaa ggagcttcgt aaagcggcta tgcagtatgc
     5401 gcgggataac tttatcggca aaagctatgt caatgaaaac agcgggcatg aactgaaggt
     5461 aacttggcaa ggtgtgaaac acgctgcgtc aaaggcaaat caggcggaat tatccatcat
     5521 gacaaaactt gatgacttat tgcgctacgc aaaatatgag ggttcttatt cggataggaa
     5581 aggtcatcct aatattattg cagcacataa gtatcgtgcc gttgccaagg ttgggaataa
     5641 gtctttaaat atcggtgtga ttgtaaggga atttccagac gaccataaac attacgacca
     5701 tttcatcttg aaggatgaat aaagcccttt tgcagtgtcg ttctggagcg gatagcgtta
     5761 aggcaagtac acttccagcc ttgaaaaagg gctttaaatt cagcatgcca tttatacagg
     5821 caggagtaaa cccatgacaa agttatacgc agaaatcgcc aagatggaga cgcaggacga
     5881 cgacacggtc aaggtttggg gttacgcttc aagcgaggaa atcgattcgg acggcgaagt
     5941 catcgcggcg gcagctatga aggcggcgat tcccgattat atgaagtttg gcgcggggcg
     6001 cgagatgcac ggctcaaacg ctgcgggaac ggcaattgaa atcaacgttg aagacgacgg
     6061 cataaccttt ttcggtgctc atatcatcga ccccgttgtc gtgtcgaaag tcaaaacagg
     6121 cgtttacaaa ggcttttcca tcggcggcag cgttaccgcc cgcgatgatt tgaacaagtc
     6181 gcaaatcacg ggcttgaagc tgacggaaat cagccttgtc gagcgccctg ccaatcccga
     6241 tgcggtgtct acctgcttta aggcggacaa aggtgcggaa acggtaaaca acgatacaga
     6301 acataatgct acatatttta gccatttccc ttccaaacaa aaaagcaccg acggcggccg
     6361 atgccccttc ctttacaggt tcccctattt tttatccgcg ggcagagccg gttttgccgg
     6421 g
//
LOCUS       DAXIFS010000105         6397 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.105, whole genome shotgun sequence.
ACCESSION   DAXIFS010000105 DAXIFS010000000
VERSION     DAXIFS010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6397
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.105"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            109..1650
                     /locus_tag="ACFOCA_001395"
     CDS             109..1650
                     /locus_tag="ACFOCA_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6988103.1"
                     /translation="MDGRRWAVWGAFALLPSAFLAAMVVAPLWAVAAYDGLAWRAVLS
                     DAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV
                     AGVGVLALFGADGLLWRGWQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTAR
                     TLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL
                     VMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRRACSDKAVSPVMPSEPQSVGEYVLL
                     AFAAAVLSVCCLFPLLAIVVKAWSAGESWRVLMESETWQAVWNTLRFSAAAVFAAAVL
                     GVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPF
                     VAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEF
                     AATLFLSRPEWQTLTTLIYAYLGRAGEDNYARAMVLTLLLAAFALGIFLLLDGGEGGK
                     RTETL"
     gene            1679..2278
                     /locus_tag="ACFOCA_001396"
     CDS             1679..2278
                     /locus_tag="ACFOCA_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class carbonic anhydrase"
                     /protein_id="HFC6988104.1"
                     /translation="MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARII
                     GLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQ
                     GLNAEEFLGRVRESRIPEDRIETLRYAGIDLDGWLTGFDNVEDSVRHTVDLIRNHPLM
                     PRHIAVHGLVIHPVTGKLTLVVDGSVSDGMDLSEGMETS"
     gene            2275..2880
                     /gene="nadD"
                     /locus_tag="ACFOCA_001397"
     CDS             2275..2880
                     /gene="nadD"
                     /locus_tag="ACFOCA_001397"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HFC6988105.1"
                     /translation="MKKIGLFGGTFDPIHNGHLHIARAFADEIGLDAVVFLPAGGPYH
                     KDAASASAADRLAMVELATAEDARFAVSDCDIVREGATYTFDTVQIFRQQFPSAQLWW
                     LMGSDSLMKLHTWKKWQMLVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQDGSVRIL
                     SAPMHNVSSTEIRRNLASQGVSDGIPPAAARYIREHGLYEK"
     gene            2939..3325
                     /gene="rsfS"
                     /locus_tag="ACFOCA_001398"
     CDS             2939..3325
                     /gene="rsfS"
                     /locus_tag="ACFOCA_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFC6988106.1"
                     /translation="MNEQELQDLQKMVGVAVNALEDIKAKDISVLETQDKTSLFARMI
                     IASGDSTRQVKALANNVAVDLKEAGFEILSTEGDSGEWTLVDAGDLVVHVMLPAVRDF
                     YDIDTLWGGEKPSFHAGMQKPWHAAD"
     gene            3379..3849
                     /gene="rlmH"
                     /locus_tag="ACFOCA_001399"
     CDS             3379..3849
                     /gene="rlmH"
                     /locus_tag="ACFOCA_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFC6988107.1"
                     /translation="MNITVLAVGTKMPRWVDEAVAEYAKRFGRDVAYVLKEIKPEKRG
                     AGVNAAQGMAAEEKRILEAIPQGAFLVVLDERGKAPTSVELAEHLKTWQQNGEHVCFV
                     IGGADGMTDRLKQQARMMMRLSSLTLPHGMVRVLLTEQLYRAASILHNHPYHRE"
     gene            3924..4190
                     /locus_tag="ACFOCA_001400"
     CDS             3924..4190
                     /locus_tag="ACFOCA_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HFC6988108.1"
                     /translation="MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTR
                     HQTMLINENRLSLADPRAREYLAQQMEQYFFGDGADAVQGYVPQ"
     gene            4347..5030
                     /locus_tag="ACFOCA_001401"
     CDS             4347..5030
                     /locus_tag="ACFOCA_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HFC6988109.1"
                     /translation="MQHDVYDYTAHTVSKNTVLQKTYRLLGFSFIPAAAGAALAANAG
                     FNFYAAFGSRWIGFAVVLAFFYGMIHFIEKNRYSNTGVTLLMVFTFGMGVLIGPVLQY
                     ALHIADGAKIVGIAAAMTAAVFLTMSALARRTRLDMNALGRFLTVGAVILMVAVVANL
                     FLGIPALALTISAGFVLFSSLMIMWQVRTVIDGGEDSHISAALTLFISLYNIFSSLLN
                     ILLSLNGED"
     gene            5154..5666
                     /gene="coaD"
                     /locus_tag="ACFOCA_001402"
     CDS             5154..5666
                     /gene="coaD"
                     /locus_tag="ACFOCA_001402"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFC6988110.1"
                     /translation="MLPNTPRRAVYAGSFDPPTLGHLWMIRQAQSMFDELIVAIGINP
                     DKRSTYTVAERQDMLCDITKMFPNVRTDVFENRFLVHYAREVDAGFIVRGIRSASDYE
                     YERSMRHINSDLAPEISTVFLMPPREIAEVSSTMVKGLVGPEGWTETIHRYVPQAVYE
                     KILAEHQHEN"
     gene            5698..6351
                     /locus_tag="ACFOCA_001403"
     CDS             5698..6351
                     /locus_tag="ACFOCA_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HFC6988111.1"
                     /translation="MLEILFRHQDFVAINKPGGISVHQDSGETGLARTLAIQLGVERV
                     WLLHRLDKQTSGILLFALNRESASALSGQFAGKSIKKTYLALSDRKPSKKQGWIKGGM
                     EKSRRGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLGSPIL
                     GDSLYGGTESETMFLYAWKIQFAYQNRQIEIVAPLKNEWQTENISHALEEFYMAKAG"
BASE COUNT         1389 a         1700 c         1854 g         1454 t
ORIGIN      
        1 ttcagacggc gggaggaagg cggatacggt atgtagtcgg attgaaatat acggtatgtg
       61 gggcttttgg gtacaatcgc aacatcagtg tttcaagtgg ggaaggcgat ggatggacgg
      121 cgttgggcgg tatggggtgc ttttgccctg ctgccttcgg cttttttggc ggcaatggtc
      181 gttgcgcctt tgtgggcggt ggcggcgtat gacggtttgg cgtggcgcgc ggtgctgtcg
      241 gatgcctata tgctcaaacg tttggcgtgg acggtatttc aggcagcggc aacctgtgtg
      301 ctggtgctgc ctttgggcgt gcctgtcgcg tgggtgctgg cgcggctggc gtttccgggg
      361 cgggctttgg tgctgcgcct gctgatgctg ccgtttgtga tgcccacgtt ggtggcgggc
      421 gtgggcgtgc tggctctgtt cggggcggac ggtctgttgt ggcgcggctg gcaggatacg
      481 ccgtatctgt tgttgtacgg caatgtgttt tttaacctgc ccgtgctggt cagggcggcg
      541 tatcaggggt ttgtgcaagt gcctgcggca cggcttcaga cggcacggac gttgggcgcg
      601 ggggcgtggc ggcggttttg ggacattgaa atgcccgttt tgcgcccgtg gcttgccggc
      661 ggcgtgtgcc ttgtcttttt gtattgtttt tccgggttcg ggctggcatt gctgctgggc
      721 ggcagccgtt atgccacagt cgaagtggaa atttaccagt tggtcatgtt cgaactcgat
      781 atggcggttg cttcggtgct ggtgtggctg gtgttggggg taacggcggc ggcagggttg
      841 ctgtatgcgt ggttcggcag acgcgcgtgt tcggataagg cagtttctcc tgtgatgccg
      901 tctgaaccgc agtcggtcgg ggaatatgtg ctgctggcgt ttgcggcggc ggtgttgtct
      961 gtgtgctgcc tgtttccttt gttggcaatt gttgtgaaag cgtggtcggc cggcgaatcg
     1021 tggcgtgtgt taatggaaag tgaaacgtgg caggcggtgt ggaatacttt gcgcttctcg
     1081 gcggcggcgg tgtttgcggc ggcggttttg ggtgtggtgt atgcggcggc ggcgcggcgg
     1141 tcggcgtgga tgcgcgggct gatgtttttg ccgtttatgg tgtcgccggt ttgtgtttcg
     1201 gcgggcgtgc tgctgcttta tccgcagtgg acggcttcgt tgccgttgct gctggcgatg
     1261 tatgcgctgc tggcgtatcc gtttgtggca aaagatgttt tgtcggcttg ggacgcactg
     1321 ccgccggatt acggcagggc ggcggcgggt ttgggcgcaa acggctttca gacggcatgc
     1381 cgcatcacgt tccccctctt gaaaccagcg ttgcggcgtg gtctgacttt ggcggcggca
     1441 acctgcgtgg gcgaatttgc ggcaaccttg ttcctgtcgc gtcccgagtg gcagacgctg
     1501 acgactttga tttatgccta tttgggacgc gcgggtgagg ataattacgc gcgggcgatg
     1561 gtgctgacat tgctgttggc ggcgttcgcg ctgggtattt tcctgctgtt ggacggcggc
     1621 gaaggcggaa aacggacgga aacgttataa tgcgaaccct ttttcagagg acggcaaaat
     1681 gagcgagttg gataacatcc ttgcccataa tcggcagttt gtcgagtcgg gcgaatatga
     1741 aaaatacttt accgacaaat accccgaacg cgggctggca gttttgtcct gtatggatgc
     1801 gcggattatc gggctgctgc ccgacgcgtt gggtttgaaa aacggcgatg ccaagctgat
     1861 taaaaatgcc ggcgcgctgg ttacgcaccc gtggggttcg gtgatgcgga gccttttggt
     1921 tgccgtgttt gaactgaagg tcagagagat tatggtcatc gcccatcacg attgcggtat
     1981 gcaggggctg aatgccgaag aattcctcgg gcgcgtccgg gaaagccgga ttcccgaaga
     2041 ccgtatcgaa accctgcgtt atgccggtat cgacctcgac ggctggctga ccggtttcga
     2101 caacgtcgaa gacagcgtgc gccacacggt ggaccttatc cgtaaccatc cgctgatgcc
     2161 gcgccatatc gccgttcacg gattggtcat ccatcccgtt accggcaaac tgacgctggt
     2221 tgtggacggc agtgtttcag acggcatgga cttatcggaa ggaatggaaa catcatgaag
     2281 aaaatcggac tgttcggcgg cactttcgac ccgatacaca acgggcatct ccacatcgcc
     2341 cgcgcctttg ccgacgaaat cggcttggac gcggttgttt tcctgccggc aggcggcccg
     2401 tatcacaaag acgcagcctc cgcttccgcc gccgaccgcc ttgccatggt cgaactggcg
     2461 acggcagaag acgcgcgttt tgccgtcagc gattgcgaca tcgtccgaga aggtgcaacc
     2521 tatacttttg ataccgtcca aatcttccgc cagcagttcc catccgcgca actctggtgg
     2581 ctgatgggca gcgacagcct gatgaagctg cacacatgga aaaaatggca gatgctcgtg
     2641 cgcgaaacca atatcgccgt cgccatgagg cagggcgaca gcctgcacca aaccccgcgc
     2701 gaactgcacg cgtggctggg caagtccctt caggacggca gcgtccgcat cttgtccgcc
     2761 ccgatgcata atgtgtcgtc aacggaaatc cgccgcaacc ttgccagcca aggcgtttca
     2821 gacggcatcc cgcctgccgc cgcacgctac atccgcgaac acggtttgta tgaaaaataa
     2881 agtcaaatca gtaagaaacg gctataatgc cgtctgaaaa catcccgtta ggaaaataat
     2941 gaacgaacaa gaactgcaag acctgcaaaa aatggtcggg gtcgccgtca acgccctcga
     3001 agacatcaaa gccaaagaca tttccgttct cgaaacgcaa gacaaaactt cgctgtttgc
     3061 cagaatgatt atcgccagcg gcgacagtac gcgccaagtc aaagcactgg ccaacaacgt
     3121 tgccgtcgat ttgaaagaag ccggttttga aatcctcagc accgaaggcg acagcggcga
     3181 atggacgttg gttgatgcag gagacctcgt cgtccacgtt atgctccccg ccgtgcgcga
     3241 cttctatgat atcgacaccc tttggggcgg cgagaaaccg agtttccacg ccggaatgca
     3301 gaagccgtgg cacgcggcag actgattccc gatgccgtct gaatgttcag acggcatttt
     3361 cctgtaaggg agaaagcatt gaacatcacc gttttggcag tcggcaccaa aatgccgcgc
     3421 tgggttgatg aggccgtcgc cgaatacgcc aaacgcttcg gacgcgacgt cgcctacgta
     3481 ctcaaagaaa tcaaacccga aaaacgcggc gcgggcgtga atgccgccca aggaatggcg
     3541 gcggaagaaa aacgcatcct cgaagccata ccgcaaggcg cgttcctcgt cgtccttgac
     3601 gaacgcggca aagcaccgac ctccgtcgag ctggcggaac acctcaaaac ttggcagcaa
     3661 aacggcgaac acgtctgctt cgtcatcggc ggcgcggacg gcatgaccga ccgcctcaaa
     3721 cagcaggccc gcatgatgat gcgcctgtcc agcctgaccc tgccgcacgg gatggtgcgc
     3781 gtccttctga ccgaacaact ctaccgcgcc gcctccatcc tgcacaacca cccctaccat
     3841 cgggaataag aaggcttttg tccgcactcc caatcggtta aaatcccccc gttatttctg
     3901 aacacacagc aaaggaatcc gctatggcac gcatggtatt ctgcgtcaag ctcaacaaag
     3961 aagccgaagg catgaaattt ccgccgcttc ccaacgaatt gggcaagcgc atttttgaaa
     4021 acgtatcgca agaagcgtgg gcggcgtgga cgcgccacca aacgatgctg attaacgaaa
     4081 accgtttaag cctcgccgat ccgcgcgcgc gcgaatacct ggctcagcag atggagcagt
     4141 atttcttcgg cgacggcgcg gatgccgttc agggatacgt tccgcaataa cggttttccg
     4201 ttttgaacac aggctgtccg aaactgcttc agacggcctt taaaatacgc cggacaactt
     4261 tatcttcacg caaccggaca aattttgaca ttgggcaatg ttaaaatccc ccattattcc
     4321 caaccgcgct ttcaggagca gatgatatgc aacacgacgt ttacgactac accgcgcata
     4381 cggtttctaa aaacaccgtc ctgcagaaaa cctaccgcct gctcggattt tcattcattc
     4441 cggcagccgc aggcgcggca cttgccgcca atgccggttt caatttttac gccgccttcg
     4501 gttcgcgctg gatagggttt gccgtcgtgt tggcgttttt ctacggtatg atccacttca
     4561 tcgagaaaaa ccgttacagc aataccggcg ttaccctgct gatggtattc acattcggta
     4621 tgggcgtatt gatcggcccc gtgctgcaat acgcgctcca tattgccgac ggtgcgaaaa
     4681 tcgtcggcat tgccgccgcg atgaccgccg ccgtcttttt aacgatgtcc gccttggcgc
     4741 gccgaacccg gctcgatatg aacgcgctcg gacgcttcct gaccgtaggt gcggtcattc
     4801 tgatggtcgc cgtggttgcc aatctgtttt tgggtattcc cgcactcgcc ctgaccattt
     4861 ccgccggttt tgtcttgttc agttccttaa tgattatgtg gcaggtacgc accgtcatcg
     4921 acggcggcga agacagccac atcagcgcgg cactgacact gtttatctcg ctttacaaca
     4981 tcttcagcag cctgctgaac atcctgttgt ctttaaacgg cgaggattga tgccggtaaa
     5041 acgccgtccg gctatgccgt ctgaaaatgc ttcagacggc attttacttt gggcatacaa
     5101 tacggatgca cacgcaccaa cacacagccg gctatgaggc cgggaggaat caaatgttac
     5161 cgaatacacc gcgccgcgcc gtttatgccg gcagtttcga tccgcccaca ttggggcatc
     5221 tgtggatgat acggcaggcg caatctatgt ttgacgaact catcgtcgcc atcggcatta
     5281 accccgacaa acgcagcacc tataccgtcg ctgaaaggca ggatatgttg tgcgatatta
     5341 ctaaaatgtt tcccaacgtc agaaccgatg tatttgaaaa ccgatttctg gtgcattatg
     5401 cccgtgaggt agatgcagga ttcatcgtgc gcggcatccg ttctgcttcg gattacgaat
     5461 acgaacgttc catgcgccac atcaacagcg acctcgcccc cgaaatatcc accgtattcc
     5521 tcatgccgcc gcgcgaaatc gccgaagtgt cgtccactat ggtcaaagga ctggtcgggc
     5581 cggaaggctg gacggaaacg atccaccgct acgtgccgca agctgtgtac gaaaaaatcc
     5641 ttgccgaaca tcaacacgaa aattgaaccc ttctattttt gcaaggcata tatggatatg
     5701 ttggaaattt tgttccgcca tcaagacttc gtcgccatca acaaaccggg cggcatatcc
     5761 gtccaccaag acagcggcga gaccggactg gcccgaacac tcgccataca gttgggcgta
     5821 gagcgtgtgt ggctgctgca ccgattggac aaacagacca gcggcatttt actgtttgcc
     5881 ctcaacagag aaagcgcgtc cgcccttagc ggacagtttg ccggcaaaag catcaaaaaa
     5941 acctatttgg cactatccga ccgcaaaccg tccaaaaagc agggttggat taaaggcgga
     6001 atggaaaaat ccagacgcgg aatgtggaag ttgacgcgca atacagaaaa tatcgccgtt
     6061 acccgattcc acagcatcag tatcgccgaa aaactgcggc tgttcatcct ggaaccgcat
     6121 acgggcaaaa cgcaccaatt gagagtggcg atgaaaagtt tgggcagtcc gattctgggc
     6181 gacagcttat acggcggaac agaatccgaa accatgtttc tgtatgcatg gaaaatacaa
     6241 tttgcctacc aaaaccgaca aatcgaaatt gttgcaccct taaaaaacga atggcagact
     6301 gaaaatatct ctcatgcgct ggaagaattt tatatggcaa aagcaggtta ataaatataa
     6361 attaatttat aaacaatatg ataaatattt ttataaa
//
LOCUS       DAXIFS010000106         6312 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.106, whole genome shotgun sequence.
ACCESSION   DAXIFS010000106 DAXIFS010000000
VERSION     DAXIFS010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6312
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.106"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..833)
                     /locus_tag="ACFOCA_001404"
     CDS             complement(<1..833)
                     /locus_tag="ACFOCA_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6988112.1"
                     /translation="MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQT
                     AAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSE
                     ILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVPKLAILLLLPLT
                     VGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRHAPFSPAVLHRGLRYGIP
                     IALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFR
                     A"
     gene            complement(1028..2137)
                     /gene="ribD"
                     /locus_tag="ACFOCA_001405"
     CDS             complement(1028..2137)
                     /gene="ribD"
                     /locus_tag="ACFOCA_001405"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFC6988113.1"
                     /translation="MFSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQG
                     FHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAA
                     MRDPNPLVAGKGLALLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSL
                     DGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQP
                     ARIVLDSRLRLPLDSHLLTDGQSPTYIATLERDEDKLRPYREHAHIRILMPSETAGGK
                     IDLNHLMRLLADEGFGEIMVEAGSELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLP
                     ENRAALSAPPLWTPVSSEILGHDIKTVFRKNDNAF"
     gene            complement(2170..2634)
                     /locus_tag="ACFOCA_001406"
     CDS             complement(2170..2634)
                     /locus_tag="ACFOCA_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HFC6988114.1"
                     /translation="MKCPFCAHPDTRVADSRLMEERNAVRRRRHCPSCGKRFGTLETA
                     ELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTKHRLYTSGQRD
                     IPSAALADMVLKELLEHNTEAAVRFAALHKRFDNPADFASWLAQAVKTDRKA"
     gene            complement(2663..3505)
                     /locus_tag="ACFOCA_001407"
     CDS             complement(2663..3505)
                     /locus_tag="ACFOCA_001407"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HFC6988115.1"
                     /translation="MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGK
                     GVRLFHDDKPSANSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMWGGY
                     WLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAG
                     LTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTP
                     SDRVAVIATLPLTRDESWSQLAVDELVMFREGNIVRHDRPENPVYMSAEEGLEIARAA
                     GVSV"
     gene            complement(4272..5351)
                     /gene="aroB"
                     /locus_tag="ACFOCA_001408"
     CDS             complement(4272..5351)
                     /gene="aroB"
                     /locus_tag="ACFOCA_001408"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFC6988116.1"
                     /translation="MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANET
                     VAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIAL
                     GGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQP
                     QAVLADLDTLHTLPARELSAGMAEVIKYGALGDIGFFEWLEQHMPELMTLDREKLAQA
                     VYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAA
                     RLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGL
                     NRLGEANITEITDTDILRRTLQPYL"
     gene            complement(5431..5943)
                     /locus_tag="ACFOCA_001409"
     CDS             complement(5431..5943)
                     /locus_tag="ACFOCA_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFC6988117.1"
                     /translation="MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAAAA
                     GVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVV
                     YLHAPPEILLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRET
                     VQTLLKRLSR"
BASE COUNT         1312 a         1569 c         2031 g         1400 t
ORIGIN      
        1 attgcgcgga aaatatacgg tgtccagacc gttgaaaaga tgctttggaa caataatgcc
       61 gccccgccga acgaaatacc catcgaataa acgccgagct gttccagacc ggcatatttt
      121 ttcaggaaca aacggtcggc ggatgccagc ccccaatagg cgatgctgct cagtgcgatc
      181 ggtatgccgt agcgcagccc ccggtgcagg acggcgggcg aaaacggtgc gtgccggacg
      241 gccttcagac ggcatcggtt ttgaaacagc aaaaaggcgg cggcggcaag gtttgccagc
      301 gcgtaaacgg cggtcaggac ggcggtgttc gccggaaagt gcagcagccc gaccgtcagc
      361 ggcagcagca gcaggatggc gagcttgggc acgagttgcg cggacgaaaa ggcaagggcg
      421 cgcccttcca tacgcaaaac cagtaagaga aagcggatgg gcaggaagct cagttcaaac
      481 agcaccagcc cgatgccggc ggcggcatcg tcgagcgaaa acaggatttc agacggcagg
      541 gacgggcggg aaagcagcag ggcggctatc gcggcggcag acagcagcgg cggcaggaac
      601 agggttttga acaaggtgtc tttgtcggcg gcggcatagt attcgcggac gtatgcctga
      661 tccagcccga ggcacaatac cgacaccgtc agtcccgccg ccgtctgcat cagcacgatg
      721 cgcccgatgt cgtcggcggg gaaataccac gacagcagcg gcaggatgat gacggctaaa
      781 accgcgctgc cgatcgagcc tgccgcgtag ccgaggattt cttttgtgtc catttttgat
      841 gtccgggcgg cggcgggatg ctgcctgtgc cgtctgaagc ctttcttgat cggaatttga
      901 cggctttcag tccgttgcgg ctgccggcgg ggtgcggcag tccgggttgc gcttttccgg
      961 gcgggcggcg gtctgaacgg ggccgttttt tatcggcgtt attatatagt gaaacggcgc
     1021 aaacccttta aaaggcgtta tcgtttttcc ggaacacggt tttgatgtcg tgtccgagga
     1081 tttcgcttga aacgggtgtc cacaagggcg gtgcggaaag ggcggcgcgg ttttcgggca
     1141 gggaaagcag gtctttgccg ctgccgagga ttttgggcga acggtacagc acgatttcgt
     1201 ccgccagatc ttctgccaga aatgcggatg tgagttcgga gcctgcttcg accatgattt
     1261 ctccgaaacc ttcgtcggca aggaggcgca tcaggtggtt caggtcgatt ttgccgcctg
     1321 ccgtttcaga cggcatcagg atgcggatgt gtgcgtgttc ccgatagggg cggagtttat
     1381 cttcatcgcg ttccaaggtg gcgatgtagg ttggagattg tccgtcggtc agaaggtggc
     1441 tgtccaaggg caggcgcagg cggctgtcta acacgatgcg tgcgggttgg cgcaaagttg
     1501 gaaaagcgcg gacgttgagc cggggattgt ccgccaacac cgtgccgatg ccggtcagca
     1561 ccgcgcagct ttcggcacgc aaaacctgta cgtcggcacg cgcgtcttcg ccggtaatcc
     1621 aaaagctgct gccgtctgaa agggcggttt tgccgtccag cgaaacggcg catttgaggc
     1681 ggacgaaggg gcggcggcgt tcgatgcgcg acaggaagcc tcggttgagt tcccttgcct
     1741 gatgttcgag taaaccgcat tccgtcttga tgcctgctgc ttcgagcagg gcaagccctt
     1801 tgcctgcaac cagcgggttg gggtcgcgca tggcggcgac gacgcgtgtt acaccggaac
     1861 ggagcagagc ttcggcgcag ggcggtgtgc gtccgtaatg gctgcacggt tcgagggtaa
     1921 caaaggcggt cgcgccttgt gccatttcgc ccgcctgacg cagggcgtgg acttcggcgt
     1981 gcggttcgcc cgctttgacg tggaagcctt gcccgacaat ttggctgccg tgtgcgataa
     2041 cgcagccgac gcgcggattg ggcgaagtgg aaaaacgtcc caaagcggca agtcggaggg
     2101 cggtttccat catggatata tctgtgtccg aaaacatagg gataccgtat cagtatgggt
     2161 tggggagaat caggctttgc ggtctgtttt gacggcttgc gccagccacg aggcaaagtc
     2221 tgccggattg tcgaagcgtt tgtgcagggc ggcgaaacgg acggcggctt ccgtgttgtg
     2281 ctcaagcagc tcttttagca ccatgtcggc aagtgcggca gaggggatgt cgcgctgacc
     2341 cgaagtgtag agcctgtgtt tcgtcaggcg gacggtttcg tcgatctgtt cgggtgtcag
     2401 ggcggatttt cgggcggcgg cggtcaggtc gttgcggagg cgttgtgcat taaagggcga
     2461 acgttttttg tccggaccga tgacggcggg cattttgagt tcggcggttt cgagcgtgcc
     2521 gaagcgtttg ccgcagctgg ggcagtggcg gcggcggcgc acggcgttgc gttcttccat
     2581 caggcgcgaa tcggcgacgc gggtgtcggg gtgggcgcaa aacgggcatt tcatagcgtt
     2641 tcttcctgat gccgtctgaa cgtcaaaccg atacgccggc ggcgcgggcg atttccagac
     2701 cttcttcggc actcatatag acggggtttt cgggacggtc gtgtcggacg atgttgcctt
     2761 cgcggaacat gaccagttcg tccacggcaa gttgggacca tgattcgtcg cgggtcagtg
     2821 gcagggtggc gataacggcg acgcggtcgg agggcgtggt tacttcggca aaatcgacca
     2881 tcacgtcgtc gtcgagcagg cgcgccttgc cgaacggggc ttggcggacg atgtagtgca
     2941 gcagtgtgct ggcgtgggca aacagggcaa tgccgtctga aagcataaag ttaaacagcc
     3001 cgaacttgcg gatttcgtgc gtcagccccg caatcgcgtc aaacagcgtg tcgtcgtcgg
     3061 gacgggcggc aaagcgggtg cgcaggcggt tgaggatgtg gcagaacgcg cgttcggaat
     3121 cggttgtgcc gacggggtgg aaaaattcgc cctgttcggg gaaaaaatca atcaaatgtc
     3181 cgttgtgggc aaacagccag tagccgcccc acatttcgcg cataaaggga tgggtgttcg
     3241 ccagcgaggt ttgtccttgc gatgctttgc ggatatgtgc gatgacgttt tccgatttga
     3301 tttggtaggc acgcacgagg tcggcgacgg gggaatttgc gctcggcttg tcgtcgtgga
     3361 acaggcgcac gcctttgcct tcgaaaaagc cgatgccgaa accgtcggca tgatggtcgg
     3421 taatgccgcc gcgccggcgg aagccttcaa aggaaaacat aatatcggtc ggcgtattgc
     3481 agttcatgcc cagcagttga cacatagttt gtccaaatga ttcagatggt cgcaagtatt
     3541 cggattatac cccgaactga aaatgccgtc tgaaatacgg cttgttcccc attattccca
     3601 cgaaaacaga aaacaaagac ggaaacttaa gattccgtca ttcccgcgca ggcgggaatc
     3661 tggaatttca atgcctcaag aatttatcga aaaaaaccaa aacccttccg ccgtcattcc
     3721 cacgaaagtg ggaatctaga aatgaaaagc aacgggaatt tatcggaaac gaccgaaacc
     3781 gaacggaccg gattcccgct tttgcgggaa tgacgaggtt ttaagttgct gttttgggtt
     3841 tctgtttttt gtggaaataa cgagattcta gggttgcaga aacttctccg aaacaacaaa
     3901 aacctctccg ccgtcattcc cacgaaagtg ggaatctaga aatgaaaagc aacgggaatt
     3961 tatcggaaac gaccgaaacc gaacggactg gattcccgct tttgcgggaa tgacgaggtt
     4021 ttaagttgct gtttcgggtt tctgtttttt gtggaaataa cgagattcta gggttgcaga
     4081 aacttctccg aaacaacaaa aacctttcca ccgtcattcc tgcgaaagtg ggaatctaga
     4141 aatgaaaagc aacgggaact tatcggaaac gaccgaaacc gaacggactg gattcccgct
     4201 tttgcggaga aagatgatgg aaaatcatca tcgtgcgtca aacccgcgcg gcagcacatc
     4261 ggcagaggaa atcagagata cggttgcagg gtgcggcgga ggatgtccgt gtcggtaatt
     4321 tcggtgatgt tggcttcgcc cagccggttc agaccgataa agcgcatgat gccgccgctg
     4381 acttttttat cgtggctcat gtgttccagc catttttcaa aggcaaacac gggtggcgcg
     4441 gacggcagtc cggcggcttc gagcagggcg gcgagccgcg cggtatctgc ggcggaggtt
     4501 ttgcccagtt gttcggacaa acgcgccgcc aacacgcagc cggcggcgat ggcttctcca
     4561 tgcagccaag tgccgtaacc catctcggtt tcaatggcgt gtccgaaggt gtgtccgagg
     4621 ttgagccatg cgcgtatgcc ctgttcggtt tcgtcttggg cgacgatgtc tgccttcatt
     4681 tggcagcagc ggtacacggc ttgggcgagt ttttcccgat cgagcgtcat cagttcgggc
     4741 atatgctgtt ccagccattc aaaaaagccg atgtcgccga gcgcgccgta tttgatgact
     4801 tccgccatac cggcggacaa ttcgcgggcg ggcagggtgt gcagcgtgtc caagtcggca
     4861 agcaccgcct gcggctggta aaacgcgcca atcatatttt tgccgagcgg gtggttgatg
     4921 gcggttttgc cgcccaccga tgagtcgacc tgactcaaca gtgtggtcgg tatttgaacg
     4981 aacggtgcgc cgcgctggta ggtggcagcg gcaaagccga ccatgtcgcc gatcacgccg
     5041 ccgcccagtg cgattaatgt ggttttgcgt tcggcgcggt tttgcatcag cccgtcaaag
     5101 atgaggttga gcgtctgcca gtttttgtgc gcctcgccgt cgggcaggat gatgctgaaa
     5161 tgggatacgc ctgccgcatc caatgccgtc tgaagcgtgc cgaggtagag cggggcgacg
     5221 gtttcgttgg cgatgatggc ggcgcgtttg cccaaatgcg gtttgagcag gcttcctgcc
     5281 tgcggcagca gtccgttgcc gataaagatg gggtagctgt gggacggggt gtgtacggtc
     5341 agtgttttca ttgttgttcc ttaaagtttg aaccgccggc ccgccgggcg gggcgcggtt
     5401 tggttttctg ggcgcggcgc atatgccggt ttatcgggat aagcgtttga gcagggtttg
     5461 cacggtttcc cggcagtttg ccgattctac ggtaaagtcg gcggtttggc ggtaaacggg
     5521 gtcgcgtgcg gcgtagagtt cacgtaattt cgccaaagga tcggcaactt gcagcaaagg
     5581 acggctgttg tcgcagcgcg tgcgttcgag caggatttcg ggcggggcgt gcagatagac
     5641 gaccgtgccg cttttgcgga taagggcgcg gttttcttct tttaacaccg cgccgccgcc
     5701 ggtggacagg acgatatggg gcaggataac cagctttttg agtatggcgg tttcgcgcga
     5761 acggaatccc tgttcgcctt ccatttcaaa tatggtgggg atgggaacgc cggcggctgc
     5821 ggcgatttcg tgatcgctgt cgtaaaaacg gtaatccagc cgctgcgcca tttgccggcc
     5881 cagcgtggtt ttgcccgcgc ccatcagtcc gatgaggatg agtttgccgt taaagttttt
     5941 catcacaatt ccttaatgtt tgacaccccg cctttcgggg cgacagggtt cgggcttgtc
     6001 gggttacggc ggaattttat acgaaatcgg cagggcggcg gtacgtttgg aaaaataacc
     6061 cgaccatccc gaacctttct gattttaagg acaaataaaa gaaatcaggg aggtttttta
     6121 tttcaggctg tgttttgaca atccgttgat ttcacttatt tgtcaggaaa aggcaattat
     6181 ctttgcttag gtaaacaatt atccaattga atatattgaa gataatatgt ttatcaatac
     6241 tatagtggat taacaaaaac cagtacggcg ttgcctcgcc ttagctcaaa gagaacgatt
     6301 ctctaaggtg ct
//
LOCUS       DAXIFS010000107         6298 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.107, whole genome shotgun sequence.
ACCESSION   DAXIFS010000107 DAXIFS010000000
VERSION     DAXIFS010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6298
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.107"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(50..1342)
                     /locus_tag="ACFOCA_001410"
     CDS             complement(50..1342)
                     /locus_tag="ACFOCA_001410"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFC6988118.1"
                     /translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIALTERTERVRPQRV
                     EQNLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
                     HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
                     RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDSLYFHGQQ
                     VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGRVLQEKGGFNIEPLVYTR
                     ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
                     NGVETLYAHLSAFSQAQGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
                     PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
     gene            1419..2387
                     /locus_tag="ACFOCA_001411"
     CDS             1419..2387
                     /locus_tag="ACFOCA_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988119.1"
                     /translation="MKLTLALPSLNLDEDEIRIPLCLPAFNKILQYGSLHRQSCTASA
                     FYARYLWCGRLAERAAQSLNMPSETVALATPVWQKMGMHQANVLTAEYLNVGTDEAER
                     LCRDLSAFYGDIPWRFVPVLPELWLVSLPCAYRWGAKPVLDLGGLLGADDQPDGEDAL
                     EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDSLHGSSQGGTLFADTVWSRFH
                     PDRRALPDNFRAYEETAAYLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
                     LYEAVRIGKIKRLDIATDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
     gene            complement(2588..4054)
                     /locus_tag="ACFOCA_001412"
     CDS             complement(2588..4054)
                     /locus_tag="ACFOCA_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6988120.1"
                     /translation="MVIFYFCGKTFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
                     EFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYSAVVSNNIAGI
                     RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
                     ALFENRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
                     NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
                     NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
                     SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
                     GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
                     HFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF"
     gene            complement(4296..6298)
                     /locus_tag="ACFOCA_001413"
                     /pseudo
     CDS             complement(4296..6298)
                     /locus_tag="ACFOCA_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374912.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1310 a         1909 c         1617 g         1462 t
ORIGIN      
        1 cctgtttgca ggttttcaga cggcattgtt ttcgtcgccg gttcaaactt caatccgatt
       61 gcgacacggt aaccggtatg ccgcgcaagc gcgcaagcag cgcgtccgct ttctgtttct
      121 gcgcggcaaa cgccgccttg tccgcctgcg tcaattcggg tgtcggcaat gcgaccgaaa
      181 caggattaac gggctgccca ttgatgcgcg cctcgtaatg caggtgcggc cccgtcgaac
      241 gcccggtcga accgacaaaa ccgatgacct cgccgccgcg cacattgcct tgtgcctgcg
      301 aaaacgcgct caagtgcgcg tacagcgttt ccacaccgtt ggcgtggcgt atcatcaccg
      361 cgttgccgta tccgcccttc cggcctttaa aggtaatcac gccgtcggcg gaagccctga
      421 ccggcgttcc ctgcggtgcg gcataatcga tgcccgtgtg cagccgccaa gtgtgcagga
      481 tggggtgcat acggtagccg aacggcgaag aaatgcgcgt atagaccagc ggctcgatgt
      541 tgaagccgcc tttttcctgc aacaccctgc cgtcttcatc ataataattg ccgccccctc
      601 cgccttcctt gtccgaacgg taatagaacg cctgatgcct tgtgccgccc ttaacgactt
      661 cagccgccaa aatatcgccc gccgccacct gctgcccgtg gaaatacagg ctgtcgtaaa
      721 tcaggcgcac ggcatcgcct tccttcaaac cgtcaaggct gaagcggccg gcgaaaatcc
      781 cgcttaagga ttcgcggatt tcgacgggca cttccgcccg cgccagcgaa ccgcgcgccg
      841 acgttttgac cacgaccgaa cgcagcgtcg gcaaaacctt catatccgcc tcagaagccg
      901 accgccgcca tatgccgcct ttcttttcca aagcgaccag attgcgctcg ccgtcttcgt
      961 cggtaaaaaa ctgtacttcg cgcgcgccgc cgtcgccgcc gaccaaaaca tgaaccgact
     1021 ggtcggcacg caaatgccgc aaatcggctt cgccgccata tttttccgtg attcgggcaa
     1081 tctcgtcccg cgccataccc gaacgcgcca gcacgtccgc cagcgagtcg cccggctgca
     1141 ccgcctcctg cacccaatat gccgtctgaa cgccgctgcc gccccaagac agcggcggca
     1201 gattttgttc cacgcgctgc ggtctgacgc gttccgtcct ctctgtcaaa gcaatgtatg
     1261 ccgccgacac caaaataatc gaaacggcaa gcgcgcgcag cgcgtatttc cgatgttttg
     1321 ccgaaagtgg gaagacagcc atattgttcc tttttgacgg cgtttgcgcc gaatcctcta
     1381 taatatccgc ccgatccgca tttgtcagac atcaaacgat gaaactcacc ctcgccctcc
     1441 cctcgctcaa tttggatgaa gacgaaatcc gaatacctct atgcctgccc gccttcaaca
     1501 aaatcctgca atacggctcg ctgcaccgcc aaagctgcac ggcttcggca ttttacgcgc
     1561 gttatttgtg gtgcggcaga ctggcggaac gcgcggcgca aagcctgaat atgccgtctg
     1621 aaaccgtcgc gctcgccacg cccgtctggc aaaagatggg gatgcatcag gcaaatgtgc
     1681 taacggcgga atatctgaac gtcggtacgg atgaagcgga acggctctgc cgcgacctgt
     1741 cggcgtttta cggcgacatt ccatggcgtt tcgttcccgt cctgcccgaa ttatggctgg
     1801 tttcccttcc ttgcgcgtac cgctggggcg cgaagcccgt tttggacttg ggcggattgt
     1861 tgggcgcgga cgatcagccg gacggggaag acgcgttgga atggctgcgc gtccaaaccg
     1921 aaatccaaat gtggctggcg gcgcaccccg tcaaccataa ccgcaagaaa cgcgggctgc
     1981 ccgagttgaa cggcttatgg ctttgggaca gtctgcacgg aagcagtcaa ggcggcacgc
     2041 ttttcgccga tacggtttgg agccgtttcc accccgaccg ccgcgcattg cccgacaact
     2101 tccgcgccta tgaagaaacg gcggcatacc tacccgacac gcaccatatc ctgtttatgg
     2161 acgatttgcg cctgaccgcc ctgacagggg acagggagcg gtatgcggca atattgcagc
     2221 agtgggaaga acgctggttc gcaccgcttt acgaagccgt ccgcatcggc aaaatcaaac
     2281 ggctggacat cgccacggac ggacaacacg gcggtacgct gaccttcaaa cccgccgaca
     2341 ggtggaaatt ttggcgcggc gcgaaaacct ttgacggaat ctggtgaacc cgcccgccgc
     2401 aaccgcgaca atgccgtctg aagcccgaat cgggtttcag acggcatttt acctcgcatc
     2461 gccgttatgc cggaaaaacc ggaatgcgtt tccgcacacg cggcggcacg caaagcaccg
     2521 cccgaaagcc gccgatgccc gccgtgatac cgccgccggc agggtttcct ccgaaaagga
     2581 acagcaatca gaacgtttta ttaaactcga caaacgcccg atttttctcg tattcgttga
     2641 acacatcgtt actccgcgtt tcgcggtgcg acaacgtcag gcgcggcgtg atgcctttga
     2701 aatgcaatgc ccggtgccaa aggctcaagg atgtgttcaa ttctttatcc ctgcgccttt
     2761 cccctttaaa accgctgaaa aagccgggtt tttcataatg ccgtttcgcc gcgccgaggc
     2821 gcaacagcga agacaggccg ctgccgcccc attcctgccc ccaggcaaag cgcaggccgt
     2881 aacggttgaa attgtcgccc cggtcggcgg ggttgcgctc gcggtaaaaa tccaaaccgc
     2941 ccatccaata ttggcgcgca ttccggtaaa acaccagcga attggaaatt tgcaaatggg
     3001 tattgtcgga acgcgcccgg cgcgtattct tcaaacgccc ccactccgcc gaagacaacg
     3061 tttgccattt cggggtttgc caacggttga aataaaggcg tgcgccgttg gtgtaagaat
     3121 aagcgtcgtt gccgtaggtg cggcgttcgt ggaacactgc cagcccggca tctttgcgcc
     3181 ggtcggcaaa accgatgccg ccggaaacgc ctgccgtcat atcgttgaat ttcttattcc
     3241 ccggataaac cctgccggac acgtcgccgc cagccgtcgt gtaccagccg tttttcagcg
     3301 accatttttt ctccgcgccg agccggtaat tgaccgccgt gccgtccacc tgtttcggga
     3361 aagtccattt gccgtactgc tgccgtttcg gggcttggtt gatattgtgt tcgcgggtga
     3421 cgctgaagcc gccatttacc ttccacgcat cgcgttcgcg caatgccttg cggtacagct
     3481 cgacctgctc catcagctgc ggcggcaggt tttccgcctt caggcggtcg aactggtctg
     3541 ccgccgcctc gttctgcctg ttttcaaaca atgccgccgc caaacgcata cggacggcgg
     3601 gcgcgtcggg ttgggcggca atcaattccc ggtaatggga aatcgcctcc ttcaccctac
     3661 cgtctgcctg cgccaaaatc ccttgtgcat aaagtgccaa catcttatcc tgctgcgcct
     3721 gttgtaggta aatcggcaaa ataacgcgga taccggcaat attgtttgag accactgcgg
     3781 aatacatcgc gcgggacaac aattcgggat ttttcagcag ggtttctccg tcaatctgca
     3841 aaacttttcc tttttcccgc acctgccccg gtaccttctc cctgtcgatt ggtttgacct
     3901 ccgcttcatg aagcctgaac tcgggacggc ttctcaaatc cggttcgcgc ggtgtttctt
     3961 cggcatatgc cgcgcttgcc aataaaggca gcagcagcat ccatctgttt cgtgcaggca
     4021 taaatgtctt cccacaaaaa taaaaaataa ccattatcaa tcggcggatt gtatcagttt
     4081 tttatgccgc tgttccaaac cctgccgccc gatgccgcga caatgccgtc tgaagccaga
     4141 atcgggtttc aaacggcggc aaaaaaccgg cggttttccg ccggtttcat catgatgccc
     4201 cgcccttcgg ggcggcaggg ttcggattgg tttgcggggc ggcgcgcggg gccgtgccgg
     4261 tgtgccgcct gtgcgtcaaa acatttcccg acgcatcaaa acagccattt gagcgacaat
     4321 gcggcttctt tgtcgccgtc cgtccttttg ccgtatccga tgcgtgcgga catatggcct
     4381 ttccaaccgg cttcaatgcc gaaccgccct tcgagcgccg tcctgcctgc cagcgtctgt
     4441 ttttcgccgt ccatttccac gccgaaagat tttgacctgt gcaaaacatt aaaagcggcg
     4501 aaaggctgaa gattgacacc gttacgcaaa gcaaaacggg tttttgcccg aataccggcg
     4561 cggctttgcc actgaccgct gccgagcagt ccgaccgccg tcccctcgct gtcggtaaag
     4621 ccgccgttta cgcccaagta ggtaaactga gcctgcggtt gcaggtaaaa ccgcacatta
     4681 ttgccttttc cgacaacgcc ttccgccaca agcgcgttgt agccgccttc gacagaagcc
     4741 gtccaacctt tggttttgta gcgttccaca cggttttcat cattgatgcg gtgtttgaaa
     4801 cgttggtatt gcaaccagcc gtccaaatac gcacccgttt gtttatcgcg caactgatgc
     4861 cacgcagcat aaacaccccc gccataacca tgcaaataac tgcctgccgc accgcctttg
     4921 ccgttgactg atgcgtgctg gccggccctg ccgcccatca cgccgattgc cagccggctg
     4981 ccttcatttt gccgtacaaa cacctcgccg ccgatttgca cgcctttgcg ccgcccgtcc
     5041 gcagccgcgc cgccccgtat attttgatgc gaccgaccgc cgatgaagcg cagccacaat
     5101 ttttgacggg acggatcggc ggcatacacg tcgccgcccc tgtcggcggc acgcaaccca
     5161 aacaaagtat ttgccgcata agcctgttgg gcatataaaa ccgcttccgc ctcagggata
     5221 gccaaacgct gcacgcccaa gcaaaatccg ccttcgcatt gcttgagcaa taattcgtac
     5281 agtccctgcc ggtaattttg tttaaacgca aacgaattag ggtctgcctt ttccgccgca
     5341 atcagtttgc gcccgtcgag cgttttcaga ttttccggcc ggcgttccaa aaccacattg
     5401 gattttccgc tgacgttttg ttcaaaggtc agggcgggtt cgtccgactc ccgcacgtcg
     5461 tagccgaaca ggaaatccgc gccgccctga tacgctttat ggacggtcag tttttcatct
     5521 ttcgtgttta ggcggatgcg ggcattatcg gaagtttcca gcgtatggat gtcggaatgg
     5581 cggcgcggtt cccaaaggga atctttcagc gtcatcttgg tcagttccaa cacctgtccg
     5641 gcgacgtggg atttgttttc gattttgacg tgtaattttt tattgaagat gttgttgaga
     5701 ctagtctgtg atgtattact atgaggagtg agtacggaat cttctaccaa tttattaatt
     5761 aaatcggggt ttttctgttt gagtatacta aattttggtc caagctgttc tatatacgcc
     5821 tcctcagtcc gttttttatt ttcttcccaa gcttcgggtc ttgttttgta taaatcctgt
     5881 aattgcttct taaccgcatc ctttaaatta tccccgtaag tatctgtaat atatttctta
     5941 acaacgggca tattatcgac ggcgagtatg ccgctattgt agtttttacc ttggatattg
     6001 atttcgtcat acccatattc ggatgaattt tgatcggttt taccgctgga aaaataatgg
     6061 gaagtgccgg gtttcggctt gtctgaaaat gaaaaatcgg catcgtcgcc gattttggta
     6121 gaacgagtat ttgaaccaag ctgagctctg aacataccga agcaatcaaa agatatgctg
     6181 cacgggccgc gccaaacgtg ggaatttctg tcttccgccg cttctaaaat aaatttgttt
     6241 ttaatctcgg cttctttgac gggatcgtac gcatccgaac ctcaaacata tggcgtgc
//
LOCUS       DAXIFS010000108         6290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.108, whole genome shotgun sequence.
ACCESSION   DAXIFS010000108 DAXIFS010000000
VERSION     DAXIFS010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.108"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..2467
                     /gene="mfd"
                     /locus_tag="ACFOCA_001414"
     CDS             <1..2467
                     /gene="mfd"
                     /locus_tag="ACFOCA_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HFC6988121.1"
                     /translation="KSSLHPVANNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFSAAA
                     TKPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGW
                     GEGKAVAAQSAIAVITESDLYQYVARSRVHNRRKKHAAVSDGLLRDLAEINIGDPVVH
                     EEHGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALH
                     KLGSGAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEE
                     TEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTT
                     LLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGLADGTVDIVIGTHKLVQDN
                     IRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSL
                     ITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLL
                     PEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKF
                     GLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE
                     IRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSP
                     ALLPESYCPDIHERLVLYKRLAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLR
                     LMAKELGIDAIDAAGEAVTVTFGKNNNVDPTEIILLIQNDKKYRLAGADKLRFTAEME
                     NIEVRINTVKNVLKTLQNRCLPK"
     gene            2616..2999
                     /gene="panD"
                     /locus_tag="ACFOCA_001415"
     CDS             2616..2999
                     /gene="panD"
                     /locus_tag="ACFOCA_001415"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFC6988122.1"
                     /translation="MFRTMLGGKIHRATVTEADLNYVGSITVDQDLLDAAGIYPNEKV
                     AIVNNNNGERFETYTISGKRGSGVVCLNGAAARLVQKGDIVIIMSYVQLSEPEIAAHE
                     PKVVLVDGNNKIRDIISYEPPHTVL"
     gene            3021..3863
                     /gene="kdsA"
                     /locus_tag="ACFOCA_001416"
     CDS             3021..3863
                     /gene="kdsA"
                     /locus_tag="ACFOCA_001416"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFC6988123.1"
                     /translation="MDIKINGITVGNDAPFVLFGGINVLEDLDSTLQTCAHYVEVTRK
                     LGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPV
                     AEVCDVIQLPAFLARQTDLVAAMAETGNVINIKKPQFLSPSQMKNIVEKFREAGNGKL
                     ILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQA
                     LDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKALDDLIKSQPI
                     LTIE"
     gene            3878..4318
                     /locus_tag="ACFOCA_001417"
     CDS             3878..4318
                     /locus_tag="ACFOCA_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFC6988124.1"
                     /translation="MMQTFRKISLYAATLWLGMQIMAGYIVAPVLFKMLPKMQAGEIA
                     SVLFDILSWSGLAVWGAVLAAAFAALTRRQTALLLFLLSALAANRFLITPVIEALKYG
                     HENWLLSFVGGSFGMWHGISSIVFMATALLSAVLSWQLSGKEAV"
     gene            4366..5652
                     /gene="eno"
                     /locus_tag="ACFOCA_001418"
     CDS             4366..5652
                     /gene="eno"
                     /locus_tag="ACFOCA_001418"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFC6988125.1"
                     /translation="MSAIVDIFAREILDSRGNPTVECDVLLESGVMGRAAVPSGASTG
                     QKEALELRDGDKSRYSGKGVLKAVEHVNNQIAQALIGIDASEQSYIDQIMIELDGTEN
                     KGNLGANATLAVSMAVARAAAEDAGLPLYRYLGGAGPMSLPVPMMNVINGGEHANNSL
                     NIQEFMIMPVGAKSFREALRCGAEIFHALKKLCDSKGFPTTVGDEGGFAPNLNSHKEA
                     LQLMVEATEAAGYKAGEDVLFALDCASSEFYKDGKYHLEAEGRSYTNAEFAEYLESLV
                     NEFPIISIEDGMDENDWEGWKLLTEKLGGKVQLVGDDLFVTNPKILAEGIEKGVANAL
                     LVKVNQIGTLSETLKAVDLAKRNRYASVMSHRSGETEDSTIADLAVATNCMQIKTGSL
                     SRSDRMAKYNQLLRIEEELAEAADYPGKAAFYQLGK"
     gene            5666..5944
                     /gene="ftsB"
                     /locus_tag="ACFOCA_001419"
     CDS             5666..5944
                     /gene="ftsB"
                     /locus_tag="ACFOCA_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HFC6988126.1"
                     /translation="MKWVTVVLSFALVCCQYSLWFGKGSIGRNSSLREQIAVQEEKNQ
                     TLALRNHSLAAEVYDLENGQEAISEIARVELGYIQDGETFYRLIRHNR"
     gene            complement(5985..6275)
                     /gene="yfaE"
                     /locus_tag="ACFOCA_001420"
     CDS             complement(5985..6275)
                     /gene="yfaE"
                     /locus_tag="ACFOCA_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I ribonucleotide reductase maintenance
                     protein YfaE"
                     /protein_id="HFC6988127.1"
                     /translation="MARIGTNKGFFELLEGETLLEGLERTGHMVEYQCRSGYCGSCRV
                     KILEGSVTYRKPPLAFLGRDEILPCCCYVEGDVRLDCGLSGEDEGLSDSLLK"
BASE COUNT         1631 a         1912 c         1523 g         1224 t
ORIGIN      
        1 caaaagcagc ctgcatcccg tcgcaaataa tctgcacggg caaatccgac agcaacctac
       61 tccctccccc gtgggggagg gttggggaga gggcaaagca gttgccgctc aaaccgaatt
      121 ttccgcagcc gcaacaaaac ctctccctag ccctctccca caggagaggg aacaaagtgc
      181 agccgtcgtt tcagacagtc tgaaagcagc cgccgtttca accgaaagca gcctgccccc
      241 cggtaaaagt aatctgcacg ggcaaatcca acagcaacct gccccctccc ccgtggggga
      301 gggttgggga gagggcaaag cagttgccgc tcaaagtgcc atcgccgtca tcaccgaatc
      361 cgatctctac caatacgtcg cccgttcgcg cgtccacaac cgccgcaaga aacacgccgc
      421 cgtttcagac ggtctgttgc gcgaccttgc cgaaatcaac atcggcgacc ccgtcgttca
      481 cgaagaacac ggcatcgggc ggtatatggg cttgatcaca atggatttgg gcggcgaaac
      541 caacgaaatg atgttgcttg aatatgcagg cgaagcgcag ctttatgtgc ctgtttcgca
      601 actgcattta atcagccgct actccggtca ggcgcatgaa aacgtcgccc tgcacaagct
      661 cggcagcggc gcgtggaaca aagcgaaacg caaagccgcc gaaaaagcgc gcgataccgc
      721 cgccgagttg ctcaacctct acgcccaacg cgctgcccaa tcgggacaca agtttgaaat
      781 caacgagttg gactatcagg cgtttgccga cggtttcggc tacgaggaaa ccgaagacca
      841 ggccgccgcc atcgccgccg tgattaaaga cctgacacag gcgaagccga tggaccgact
      901 cgtgtgcggc gatgtcggct ttggcaaaac cgaagtcgcc ctgcgcgccg cgtttgtggc
      961 ggtgatgggc ggcaaacagg tcgccgtact cgccccaacc acgcttctag tcgagcagca
     1021 cgcgcaaaac tttgccgacc gtttcgccga tttccccgtg aaagtcgcca gcctttcgcg
     1081 tttcaacaac agcaaagcca ccaaagccgc actggaaggc ttggcggacg gcacggtcga
     1141 catcgttatc ggcacgcaca aattggtgca ggacaacatc agattcaaaa gcttaggttt
     1201 agtgattatc gatgaagaac accgcttcgg cgtgcgccag aaagaacagc tcaaacgcct
     1261 gcgcgccaat gtcgatatcc ttaccatgac cgccacgccg attccgcgca ccctcagcat
     1321 ggcactcgaa ggcctgcgcg acttctcgct gattaccacc gcgcccagcc gccgcctcgc
     1381 cgtgaaaacc tttgtcaaac cgttcagcga aggcagcgtg cgcgaagccg tgttgcgcga
     1441 actcaaacgc ggaggacagg tatttttcct gcacaatgaa gtagatacga ttgaaaatat
     1501 gcgcgagcgg ctggaaaccc tgctgcccga agcccgcatc ggcgtggcgc acggacaact
     1561 gcgcgagcgc gagctggaac aagtcatgcg cgacttttta cagcaacgat tcaacgtgtt
     1621 gctctgttcc accatcatcg aaaccggtat cgacattccc aacgccaaca ccatcatcat
     1681 caaccgcgcc gacaaattcg gactggcgca actgcaccag cttcgcgggc gcgtcggacg
     1741 cagccaccac caagcctacg cctacctgct cacgcccgaa tacatcacca aagacgcaga
     1801 aaaacgcctc gacgccatcg cggcagcaga cgaactcggc gcaggtttca ccctcgccat
     1861 gcaggatttg gaaatccgcg gcgcaggcga aatcctcggc gaagggcagt ccggcgaaat
     1921 gatacaggtc ggcttcacgc tctacaccga aatgctcaaa caagccgtgc gcgatctcaa
     1981 aaaaggccgc caacccgacc tcgacgcgcc gctgggcatc accaccgaaa tcaaactgca
     2041 cagccccgcc ctactgcccg aaagctactg ccccgacatc cacgagcgtc tcgtcctcta
     2101 caaacgcctc gccgtctgcg aaaccgtgca gcaaatcaac gccatacacg aagaactcgt
     2161 cgaccgcttc ggcctgcccg aacaacccgt caaaaccctt atcgaaagcc accacctgcg
     2221 gcttatggca aaagaattgg gtatcgatgc cattgatgcg gccggcgaag cggtaacggt
     2281 aaccttcggt aaaaacaata atgtcgatcc aaccgaaatc atcctgctga ttcagaacga
     2341 caaaaaatac cgccttgccg gcgccgataa gctgcggttt accgcagaga tggaaaatat
     2401 cgaggtcaga atcaacaccg taaaaaacgt tttaaaaacc ttgcaaaaca gatgcctgcc
     2461 caaataaagc cgacaccgca atgccgtctg aaacaccgtt ttccttgtcc gaaagccgcc
     2521 attatgaatt tgaaggaaac tccactataa tacggcattc agatctccag acggcatcgc
     2581 gcccgtcaga ccgcacacaa accaaaagga aatacatgtt ccgtactatg cttggcggaa
     2641 aaatccaccg cgccaccgtt accgaagccg atttgaacta cgtcggcagt attaccgtcg
     2701 atcaagacct gttagacgca gcaggcatct accccaacga aaaagtcgcc atcgtcaaca
     2761 acaacaacgg cgaacgtttt gaaacctata ccatttcagg caaacgcggc agcggcgtgg
     2821 tctgcctgaa cggggcggcg gccaggctgg tacagaaagg cgatatcgtc atcatcatgt
     2881 cttacgtcca actctccgaa cccgaaatcg ccgcacacga acccaaagtc gtcttggtag
     2941 acggaaacaa caaaatccgc gacatcatct cctacgagcc gccgcacacc gtgctgtaac
     3001 cctgaaaacg gacattgacc atggatatta aaatcaacgg cattaccgtc ggtaacgatg
     3061 ctcctttcgt actgttcggc ggcatcaacg ttttagaaga tttggattcc accctccaaa
     3121 cctgtgcgca ttacgtcgaa gttacccgaa aactcggtat tccctatatc tttaaagcct
     3181 ctttcgacaa ggcaaaccgt tcctccatcc attcttatcg cggcgtaggc ttggaagaag
     3241 gcttaaagat ttttgaaaaa gtcaaagcag agttcggcat ccccgtcatt accgacgtac
     3301 acgaacccca tcagtgccaa cccgtcgccg aagtgtgcga tgtcatccag cttcccgcct
     3361 ttcttgcgcg gcagaccgat ttggtggccg caatggcgga aacgggcaat gtcatcaaca
     3421 tcaaaaaacc ccagttcctc agcccttcgc aaatgaaaaa catcgtggaa aaattccgcg
     3481 aagccggcaa cgggaaactg attttatgcg aacgcggcag cagcttcggc tacgacaacc
     3541 tcgttgtcga tatgctcggt ttcggcgtga tgaaacaaac ctgcggcaac ctgccggtta
     3601 ttttcgacgt tacccattcc ctgcaaaccc gcgatgccgg ttctgccgca tccggcggtc
     3661 gtcgcgcaca ggctttggat ttggcacttg caggcatggc aacccgcctt gccggcctgt
     3721 tcctcgaatc gcaccccgat ccgaaactgg caaaatgcga cggccccagc gcgctgccgc
     3781 tgcacctttt agaagatttt ttaatccgca tcaaagcatt ggacgattta atcaaatcac
     3841 aaccgatttt aacaatcgag taacacggtt tcgccttatg atgcagactt tccgaaaaat
     3901 cagcctgtat gccgcaacct tgtggctcgg tatgcagatt atggcgggtt atatcgtcgc
     3961 gccggtgctg ttcaaaatgc tgcccaaaat gcaggcgggc gaaattgcca gcgtattgtt
     4021 cgacatcctc tcttggagcg ggcttgccgt ttggggcgcg gtactggctg ccgcctttgc
     4081 cgccctaacc cggcggcaaa ccgccctgct gcttttttta ttgtccgccc ttgccgccaa
     4141 ccgattcttg attacacccg ttatcgaggc gctgaaatac gggcatgaga attggctgtt
     4201 gtcgtttgta ggcggatcct tcggaatgtg gcacggcatt tccagtattg tttttatggc
     4261 aaccgcccta ctttcagcag ttttaagttg gcagctttcc ggcaaagagg ccgtctgaag
     4321 ccctcccatt ttttacctcc ctttcacttc acttggagaa cattcatgag cgcaatcgtt
     4381 gatattttcg cccgcgaaat tttggactca cgcggcaacc ccacagtcga gtgtgatgta
     4441 ttgctcgaat ctggcgtaat gggacgtgca gccgtaccga gcggtgcgtc caccggtcaa
     4501 aaagaggctt tggaactgcg cgacggcgac aaatcccgtt attcgggcaa gggcgtattg
     4561 aaggcggtcg aacacgtcaa caaccaaatc gcccaagccc tcattggtat cgatgccagc
     4621 gaacaatctt atatcgacca aatcatgatc gaattggacg gtactgaaaa caaaggtaac
     4681 ttgggtgcca acgcgacttt ggccgtttct atggccgtag cacgcgcagc cgctgaagat
     4741 gcagggctgc cgctttaccg ctacttgggc ggcgcaggtc cgatgtccct gcccgtaccg
     4801 atgatgaacg tcatcaacgg cggcgaacac gccaacaaca gcctgaacat ccaagagttt
     4861 atgattatgc ccgtcggcgc aaaatctttc cgcgaagcgt tgcgctgcgg tgcggaaatt
     4921 ttccacgcct tgaaaaaact gtgcgacagc aaaggcttcc cgaccacagt cggcgacgaa
     4981 ggcggtttcg cccccaacct gaacagccac aaagaagccc tgcaactgat ggtcgaggcg
     5041 accgaagccg ccggctacaa agcgggcgaa gacgtattat tcgcattgga ctgcgcctcc
     5101 agcgagttct acaaagacgg caaataccac ttggaagccg aaggccgctc ctacaccaac
     5161 gcggaatttg ccgaatatct ggaaagtctg gtcaacgagt tccccatcat ctccatcgaa
     5221 gacggcatgg atgaaaacga ctgggaaggc tggaaactgc tgaccgaaaa actgggcggc
     5281 aaagtccaac tcgttggcga cgacctcttc gttaccaacc cgaaaatcct tgccgaaggc
     5341 attgaaaaag gcgtggcaaa cgcactattg gtcaaagtca accaaatcgg tactttgagt
     5401 gaaaccctga aagccgtcga cttagccaaa cgcaaccgct acgccagcgt aatgagccac
     5461 cgctccggcg aaaccgaaga cagcaccatt gccgacttgg cagtcgccac caactgtatg
     5521 cagatcaaaa ccggttcttt gagccgttcc gaccgcatgg cgaaatacaa ccaactgctg
     5581 cgtatcgagg aagaattggc ggaagccgcc gactaccccg gcaaagccgc attctaccaa
     5641 ctgggcaaat aaaaaaggtt aaggtatgaa gtgggtaact gtcgttttat ccttcgcact
     5701 tgtctgttgc caatacagcc tctggttcgg caaaggcagc atcggacgca acagcagtct
     5761 gagagaacag attgccgttc aagaagaaaa aaaccagaca ctcgccctac gcaatcattc
     5821 ccttgccgcc gaagtctatg atttggaaaa cggtcaagaa gccatttcgg aaatcgcccg
     5881 ggtagaactg ggttatatcc aagacggtga aaccttttac cgactcatca ggcataaccg
     5941 gtaataccgt caaaaagccg tccgaaccaa tgttcggacg gcttttattt caacaaactg
     6001 tcagacagcc cctcatcctc ccccgacaaa ccgcaatcca gcctgacatc cccctcgacg
     6061 taacagcagc acggcagtat ctcgtcccgc cccaaaaaag ccaaaggcgg cttccgataa
     6121 gtaacgcttc cctccaaaat cttcacccgg cacgatccgc aatatccgct tcggcactga
     6181 tattccacca tatgccccgt ccgttccaag ccttccaaca gggtctcgcc ctccaagagc
     6241 tcaaaaaaac ccttattcgt accaatgcgc gccatttccg accaatcaaa
//
LOCUS       DAXIFS010000109         6204 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.109, whole genome shotgun sequence.
ACCESSION   DAXIFS010000109 DAXIFS010000000
VERSION     DAXIFS010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6204
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.109"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..1254
                     /locus_tag="ACFOCA_001421"
     CDS             205..1254
                     /locus_tag="ACFOCA_001421"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6988128.1"
                     /translation="MSKQPTSKRQWRDGAAPSAKKTAKPFKSKARPKGETRKTATQAY
                     GQKASDGIKPQNAPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKV
                     LAASGVGSRREMEEWITNGWITVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRI
                     ILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQ
                     RFAHPSFEVEREYAVRVLGGLTGEQMRVLTEEGVMLEDGLAKVERIREQGGEGANKWY
                     NVVIKEGRNREVRRIFESQGLTVSRLVRVGFGPIGLPNRLKRGQFYELNPAEVANILK
                     WAEMLLPGEYRRKKA"
     gene            complement(1323..2864)
                     /locus_tag="ACFOCA_001422"
     CDS             complement(1323..2864)
                     /locus_tag="ACFOCA_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HFC6988129.1"
                     /translation="MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPL
                     TKLIGITESAAGDWKLTTVGWIFSIALAMLGTSAALFGTWMERVGPRKAIFAAACCFS
                     LGFFVSAFGVRTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIM
                     GFGGGAMLASPLSVSLMNAFSNAASVGVAETFAVLGLLYLALMMFGAFTIRVPADGWK
                     PEGYTAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQEL
                     FSETSIGRQAAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLL
                     YFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAW
                     STAAVIGPVLVNYIRQSQIDSGIPAAQAYGVTMYIMACLLIIGLLCNLAVKSVHEKHH
                     EKDIKTAAHSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMVFVKA
                     LDLFS"
     gene            complement(3157..4512)
                     /gene="xseA"
                     /locus_tag="ACFOCA_001423"
     CDS             complement(3157..4512)
                     /gene="xseA"
                     /locus_tag="ACFOCA_001423"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFC6988130.1"
                     /translation="MSDFFHSDVLSVSELNAFAKSILENHLAGLWIAGEVSNLTRAAS
                     GHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVAGKISIYETRGEFQITVNEV
                     RLKGLGQLYEAYDRLKAQLQAEGAFAAERKKPLPARPQCIGIVTSLAAAALRDVVTTL
                     KRRAPEIPVIVYPTPVQGTGSELQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNE
                     EPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQ
                     AQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRASIGKLAQTLSYSMKQNLRA
                     HTARFERQTQALQHYRPDVSVCKNNIVRLQTALPAAFSQLLTHRRQSLTAQAALLEAV
                     SPQHILERGFSVVKDTRGQVIRNADVLKQGQKLHITFADGETDVRVSKEQGQQDLFDC
                     I"
     gene            4709..5530
                     /gene="nadE"
                     /locus_tag="ACFOCA_001424"
     CDS             4709..5530
                     /gene="nadE"
                     /locus_tag="ACFOCA_001424"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HFC6988131.1"
                     /translation="MMRIFSTGGKMDTQAVITHIARWLDEYAARANAKGFVVGVSGGI
                     DSAVVSALAARTGRPTLLLDMPIRQHPDQLERARLHIRNLQRQYANVSAQTVDLTDTF
                     QTFEQTVGIHQTAFDNQPLSLANARSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGF
                     FTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGAS
                     YPELEWAMGVYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG"
     gene            complement(5598..6071)
                     /gene="dnrN"
                     /locus_tag="ACFOCA_001425"
     CDS             complement(5598..6071)
                     /gene="dnrN"
                     /locus_tag="ACFOCA_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein DnrN"
                     /protein_id="HFC6988132.1"
                     /translation="MTDFSVWETAPFGATVDHILQRYHNVHRAQFEELVPLAQKVAQV
                     HADTFPAEIAGLLAYMQNELLMHMMKEERMLFPMINQGVGRGAAMPISVMMHEHEEHD
                     RAIARLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS"
BASE COUNT         1498 a         1755 c         1673 g         1278 t
ORIGIN      
        1 ttgaaagatt ctacccccgc acgcaaaccg atttcaaccg ttgcacaaac tttgcctcgc
       61 cacaagccgc agcgacgatt tcatccgcaa aaccgccgca tcaggtacaa tatcgaaccg
      121 tccgactgag gacggcattt tatcaacccg tcctgccgca tacgccgcag aagaaccgct
      181 ttatcaagcg agttaggaaa aatgatgtcc aaacagccca ccagcaaacg ccaatggcgc
      241 gacggcgcag ccccgtctgc caagaaaacc gccaaacctt tcaaaagcaa agcccgtccc
      301 aaaggcgaaa cgcgcaaaac cgccacccaa gcttacggac aaaaagcttc agacggcatc
      361 aagccgcaaa acgcccccaa acagcgcgcc gccaaagcca aaaaactcgt cgtccgcaat
      421 cccaaccaaa aaattatgga acacgcgcgc gatttgaaag aacgccgcag cgacctgtcg
      481 cgcatggaac ccgaacgcct gcaaaaagtg cttgccgcgt ccggcgtcgg ctcgcgccgc
      541 gaaatggaag aatggattac caacggctgg ataacggtca acggcaaaac cgcgcaactg
      601 ggcgacaaag ttacccccga cgaccacgtt accgtcaaag gcagcatcat caagctcaaa
      661 tgggcggacc gcctgccgcg catcatcctg tattacaaac aagaaggcga aatcgtttcc
      721 cgtgacgacc cgcaaggccg cgtcagcata ttcgaccgcc tgccgcaggc cgccagcagc
      781 cgctgggtcg ccatcggacg cttggacatc aacaccagcg gacttctgat tcttaccacc
      841 tccggcgaac tcgtccaacg tttcgcccac cccagcttcg aagtcgaacg cgaatacgcc
      901 gtgcgcgtct tgggcgggct gaccggcgaa caaatgcgcg tcctcaccga agaaggcgtg
      961 atgctcgaag acggcttggc aaaagtcgaa cgcatccgcg aacaaggcgg cgaaggcgcg
     1021 aacaaatggt acaacgtcgt gattaaagaa ggccgcaacc gcgaagtgcg ccgcattttt
     1081 gaaagccaag gactcaccgt cagccgcctc gtgcgcgtcg gcttcggtcc catcggactg
     1141 cccaaccgcc tcaaacgcgg gcagttctac gaactcaacc ccgccgaagt cgccaacatc
     1201 ctcaaatggg cggaaatgct gctgccgggc gaataccgcc gcaaaaaagc ctaaacccgc
     1261 caaaacacaa aaatgccgtc tgaaacatct gctgtttcag acggcatttt attcgggcgt
     1321 tttcaggaga aaaggtcgag tgctttgaca aagaccatca ccacgccgta ggcgagtggt
     1381 atgacggcca atgcccaacg ccaccagacc gatatgccgc cgccggaaac tttttcgccc
     1441 acaaggtaag cgtcggatat ggcggtttcg tcgtcggggt tgccgctgtg tgcggcggtt
     1501 ttgatgtctt tttcgtggtg tttttcgtgt acggatttga cggcgaggtt gcacaacaaa
     1561 ccgataatca gcaggcacgc catgatgtac atggttacgc cgtatgcctg tgccgccggt
     1621 atgccgctgt cgatttggct ttggcgtatg taattgacca gtaccgggcc gatgacggcg
     1681 gcggttgacc aggccagcag gatgcgcccg tgaatcgcgc cgacctgata ggtgccgaac
     1741 aggtctttca ggtaggcggg aatggcggca aatccgccgc cgtacatgga aataatcacg
     1801 caaaagccga tgatgaacag ggctttgctg ccgccctcgc cgatggaggg aacggcgaaa
     1861 tacagcagcg agccgagtac gaagaagatg gtgtaggtgt ttttgcgtcc gattttgtcg
     1921 gaaacgctcg accacaaaaa gcgtccgccc atgttaaaca ggctcaggag gctgacgaag
     1981 cctgccgccg cacctgcgcc gactgctgcc tgcctgccta tggaggtttc ggaaaagagt
     2041 tcctgaatca tcacggatgc ctgacccaat acgccgatgc cggcggttac gttcaggcac
     2101 aatacccaga acaacagcca aaactgcggc gttttcatgg cttgggacac gttgacatga
     2161 ttactgctga ccagcttgtt ttgcgttttc ggcgcggtat agccttcagg tttccagccg
     2221 tcggcaggta cgcggatggt aaacgcgccg aacatcatca gtgcgaggta aagcaggccc
     2281 aatacggcaa aggtttcggc aaccccgacc gaagcggcgt ttgaaaaggc gttcatcagt
     2341 gatacggaaa gcggagaggc cagcattgcg ccgccgccga aacccataat cgccaaaccg
     2401 gtcgccatac ccggcttgtc gggaaaccat ttcatcagtg tggaaaccgg cccgatgtag
     2461 cctaagccta agcctacgcc gccgatgacg ccgttgccca aatagagcag gaagaggttg
     2521 tgcgtacgca cgccgaatgc ggatacgaag aagcccaggc tgaaacagca ggcggcggca
     2581 aatatggctt tgcgcggacc tacccgttcc atccatgtgc cgaacagggc agccgacgtg
     2641 cccagcatcg cgagtgcgat actaaaaatc caacctacgg tcgtcagctt ccaatctccg
     2701 gccgccgatt cggttatgcc gataagtttg gtcagcggcg cgttgaatac ggaataggcg
     2761 taaatctgcc cgatggcaag gtgcaccgcc aatgctgcgg gcggtacgag ccaacggttg
     2821 aaacccggct tggcaatgct tgcctcacgg tctaaaaact tcataacatc ctctttctgt
     2881 cagttgaaaa ataaaatttc atttgcccaa tggaaactta ttgaaaatta taaaaaaata
     2941 tcggatcggt tttttatccg ccccaagatg ccccgtctga aacatttcgg gtgtacggaa
     3001 aggtttctgt tttttccgac aaattcctgc ggcttttcgc ttccggattc ccgctttttc
     3061 aggaatgacg aattaaagat tatcttaagg tcaagggact ggattcccgc tttcgcggga
     3121 atgacggcgg agggggagcg gtttttccga ttgggtttaa atgcaatcga acaaatcctg
     3181 ctgcccttgt tctttgctta cgcgcacgtc ggtttcgccg tcggcgaagg taatgtgcag
     3241 cttctgcccc tgcttcaaaa catcggcgtt gcggatgact tgtccgcgtg tatctttgac
     3301 gacggaaaag ccgcgttcca aaatgtgctg cggcgaaacg gcttcgagca atgcggcttg
     3361 ggcggtcagg ctttggcggc ggtgggtaag cagttggctg aaggcggcgg gcaatgccgt
     3421 ctgaaggcgg acgatgttgt ttttgcaaac ggaaacatca ggacggtaat gttgcagggc
     3481 ttgggtttgg cgttcaaaac gggcggtgtg ggcacggagg ttttgcttca tagagtaaga
     3541 cagcgtttgc gccagcttgc cgattgaagc gcgctgctca tcaagttttt ggcgcggatg
     3601 acggatttgc cgcgcaagcc agtcgagttt ttggctggca tcgaaatagc gttgttccaa
     3661 aacggttttc agacggcctt gcgcctgagc gagacgatgt agcgattctt ggcggttggg
     3721 gctgaccagc tccgccgcac cggtcggcgt gggcgcgcgc acgtcggcga caaaatcggc
     3781 aagcgtgaaa tcggtttcgt gtcccacgcc actgacgacg ggaaccgtgc aggcttcgat
     3841 tgcgcgcacg accggttctt cgttaaacgc ccacaagtct tcaatgctgc cgccgccgcg
     3901 acagacaatc aacacgtcgc attcggcgcg ttgcgaggcg gttttaatcg cttgtgcgat
     3961 ttgtaactcg ctgcctgtgc cttgaacagg tgtcggataa acgataacgg ggatttcggg
     4021 tgcgcggcgt ttcaaggtag taacgacatc gcgcaaagcc gccgccgcca gactggttac
     4081 gatgccgata cattgcggtc gggcgggcaa aggtttcttg cgttccgccg caaacgcgcc
     4141 ttccgcctgc aactgcgcct tcaaccgatc gtaggcttcg taaagctgcc ccaagccctt
     4201 gagccgcact tcgttcacgg taatctgaaa ttcgccccgc gtttcataaa tactgatttt
     4261 gcccgccact tcgatatggt cgccttcttt caaaggtttc gccaaacgcg ccgccgcacc
     4321 cttgaacatc gcgcaacgca cctgcgcgcg gctgtctttg agcgagaaat aataatgccc
     4381 gctggcggca cgggtcaggt tggacacttc gcccgcaatc cacagaccgg caaggtggtt
     4441 ttccaaaata cttttggcaa atgcgttcaa ctcggaaacg gacaacacgt cagaatggaa
     4501 aaaatcagac atcgaatcaa tcaaatagta aaaaatatga atatgttttg aagcccaagg
     4561 cggcatagag ccgcctaaat tgtcaacaat attataacac gcgccatctt gccgcccgcc
     4621 ttttcccata tgactttttt aagcggggaa tgggaaaaat attcatcaac ctgcctgcaa
     4681 tctattcaaa ttgaaccgcc gacaagctat gatgcggata ttttcgacag gaggaaaaat
     4741 ggatacgcag gcagttatca cacatatcgc ccgatggttg gacgaatacg ccgcacgggc
     4801 aaatgcaaaa gggtttgtcg tgggcgtttc cggcggcatc gattccgccg tcgtctccgc
     4861 actcgccgcc cgcaccggcc gccccacgct gcttctggat atgccgatac gccaacaccc
     4921 cgaccagctt gagcgggcaa ggctgcacat ccgcaatctg caacggcaat atgccaatgt
     4981 aagcgcgcaa acggtcgacc tgaccgacac cttccagacc tttgaacaaa ccgtcggcat
     5041 tcatcagacg gcatttgaca atcagccgct ttccctcgcc aacgccagaa gccgcctgcg
     5101 tatgctgacc ctgtactact acgggcagat acacggactg ctggttacgg ggacaggtaa
     5161 taagattgaa gatttcggcg tgggcttttt tactaaatac ggcgacggcg gcgtagacat
     5221 cagcccgatt gccgacctga ccaaaacgca ggtttaccgg cttgccgaag cattgggcgt
     5281 ggacgaggcg attcaaaaag ccccgccgac cgacggcctg tgggatacgg aacgcaccga
     5341 cgaagaacag atgggcgcaa gctatcccga actggagtgg gcaatgggcg tgtacggcac
     5401 gcgcaaaccc gaagattttg aagggcggca gcgcgaagtt ctggaaatct atacgcggct
     5461 tcaccgcgcc atgcagcaca aaatcaaccc gattcccgtg tgccgcatcc cgcccgaatt
     5521 gttgggctga acgtgaaaat gccgtctgaa gcggaaaacc gtgtttcaga cggcatggaa
     5581 atatccggac gcgctcctta agaatcgagt acgcgggcaa acagaatatc gttttccaaa
     5641 tgaatgtggt cgttcaaatc ctccaccatt tctttcgcca gcgcgtaaag ccgcgtccag
     5701 cttccgcaag ccccttctgg cggttggaaa ttgtcggtca gctctttgag ccgtgcgatg
     5761 gcgcggtcgt gttcttcgtg ttcgtgcatc atcacgctga tgggcattgc cgcaccgcgt
     5821 ccgacaccct gattaatcat cggaaacagc atcctttcct ctttcatcat atgcatcagc
     5881 agttcgttct gcatataggc aagcagcccg gcaatttccg ccggaaaggt atcggcatgg
     5941 acttgggcca ctttctgagc cagcggcacc aattcttcaa attgtgcgcg gtggacattg
     6001 tggtagcgtt gcaggatatg atcgacggtt gcaccaaagg gggcggtctc ccaaacggaa
     6061 aaatcagtca tcgcagtgtt ccttttacag ggtttcgggt ttggttttga acattcatac
     6121 tttaagaatc aattcaaacg gagcatacac cgcccgcgcg cttctgtaca gcctcaaacg
     6181 tattccttac attttgataa taaa
//
LOCUS       DAXIFS010000110         6138 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.110, whole genome shotgun sequence.
ACCESSION   DAXIFS010000110 DAXIFS010000000
VERSION     DAXIFS010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6138
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.110"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(265..3024)
                     /locus_tag="ACFOCA_001426"
     CDS             complement(265..3024)
                     /locus_tag="ACFOCA_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HFC6988133.1"
                     /translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
                     IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQV
                     EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPN
                     GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
                     YFRPDIGEILVDNQEVHDQVAEFMSYVMPGNVGRLKLYQDHTPLFSRFQIEHQIESAF
                     SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGSDIEDTAFKTNMEAAEEVARQMRLR
                     DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
                     LGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEAMKDNTGEVHAQVPVDVATFLLN
                     EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRIDDVEEDGEPSYKRVAEPEEDE
                     SAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWWDSFKAWLKRIFGGSETQA
                     APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
                     RNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSE
                     RGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
                     QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
                     ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAE
                     QARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQV
                     ETRQG"
     gene            3517..4509
                     /locus_tag="ACFOCA_001427"
     CDS             3517..4509
                     /locus_tag="ACFOCA_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6988134.1"
                     /translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
                     IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDA
                     LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSA
                     LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAH
                     TVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
                     ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPLDLAQFAVMLENGTKM"
     gene            4575..5729
                     /gene="lpxB"
                     /locus_tag="ACFOCA_001428"
     CDS             4575..5729
                     /gene="lpxB"
                     /locus_tag="ACFOCA_001428"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFC6988135.1"
                     /translation="MVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARFVGIGGE
                     LMKAEGFESLYDQERLAVRGFAEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDF
                     NLGVAERLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGR
                     AEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALL
                     LLERYPAARFLLPAATEATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAADAVLVTS
                     GTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQSEAK
                     PEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
     gene            5737..5895
                     /locus_tag="ACFOCA_001429"
     CDS             5737..5895
                     /locus_tag="ACFOCA_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988136.1"
                     /translation="MDYFPEAARITKKGGEIVINGTSNNKYLRGIPNETELARMGLRL
                     KYNGQLTD"
     gene            complement(5939..>6138)
                     /locus_tag="ACFOCA_001430"
     CDS             complement(5939..>6138)
                     /locus_tag="ACFOCA_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6988137.1"
                     /translation="ILTGSPKTQVDELRRIWPDMEEMLLYFPDNPWFYVEHFWWGATC
                     PIELTQLPKIEIYEEQMKQGK"
BASE COUNT         1190 a         1504 c         1904 g         1540 t
ORIGIN      
        1 gaaaggttgt gggaatctag acctttgggc ggcggcaata ttcaaaaatt atctgaaagt
       61 ttagaggttc tagattcccg ttttcacggg aatgacggaa tgttgcggga atcatgggaa
      121 tgacggaatg ttgcgggaat catgggaatg gaggaatgtt tcggtaatca cgggaatggc
      181 gaagtttcag acggcattgc aggtatccga acccatgtaa aaaagaggtt ctgcggaaca
      241 gaacctcttt ttgccgccgt cggttcagcc ttgccgggtt tcgacttgga tcatttcttc
      301 ggcagggacg gttgcgactt cagacggctt gggctgttcg gaacggcgca aaccgcgtcc
      361 ggcttggact tcgggttgtg ccgcccatgc cttcaatgcg gcagggtcgg tttcgatcag
      421 gacgagtccg ccggtttgtg cggtttcccg tgcctgttcc gccgcagccg taaaggttgc
      481 ggtttcagac ggcatttcct gtgcttcggc tttcggtgtc gcgccttcgg gcaggatggc
      541 ggcggtggca cggcggattt tttccgccgc atcataaacc ggtgcgtcgc cgtttgaaac
      601 ggcgggagat gctgtcggaa gatccctttc tgcaaccgga tcggcaatgc tgacggtaat
      661 cggcgcgttt gcgtcggttt cgccgaaaac gtgcgcggcg gcggaacgga ctttgtcggc
      721 ggtgtcgtga atattcaggt actgctcgat tttggcggca gacggaatat tgcgtttttt
      781 gccgttttga cggcggtcgc gctgattgtt gcgctcgcgg cgttctttgg catctcggct
      841 gtcgcgttcg cggcggttgc gttcggattt gggcttgctg cctttgtctt ctgcggtatg
      901 cggttcggac ggcgtgtttt ccgctgtctg aacggttgtt tcggcaacgg tggcggtttc
      961 cggcgcggtt tggccgcgtt cgctgcggct gccgttgcgg cggcgttttc cggtttgcac
     1021 ttcggtttcg gacggtgcgg catctgcaac ggttgcggca ggctgtatgt tgcggtcttg
     1081 gatttccgct tcgtcggcgc gtccggcggc acggtcgccg cgttcgttgc ggcggcggtt
     1141 gccgttgttg cgcgtttcgg ctttgtcggc gcgcgcttcc tgtccggcag ttttgcctgc
     1201 cacttcgcgg acttctactt tgctgccttc gcgtttgctg cggcgcgggt tttggcggcg
     1261 gttgttggcg cggctgccgc tgcggtttgc cgtgctgcgt ttttcggagg tttcggcagc
     1321 gggcgcggct tgggtttcgc tgccgccgaa aatgcgtttc aaccaagctt tgaagctgtc
     1381 ccaccaagag gcttttttct caggggcgac agtcggtgca ggctgggtat ggcgtacgcc
     1441 tttgacagct ggctcaggac gggaagcttt ggctttttcg ctgccgaaag gtttggcgga
     1501 ttcgtcttct tccggctcgg caacgcgttt gtagctcggt tcgccgtctt cttctacgtc
     1561 atcaatgcgg atgcggttga tttcgtagtg cggattttcc aagtggatgt ttggaatcag
     1621 gacgacgttg acatccaaac gctcttccat cgcaaacagc tcggcgcgtt tttcgttcag
     1681 caggaaggtg gcgacatcga cgggcacttg tgcatgcact tcgccggtgt tgtccttcat
     1741 cgcttcttcc tgaaccatac gcaaaacgtg cagggcggtg gattcgatgc cgcggatgac
     1801 gcctgtgccg gcgcagcgcg gacaggcgac gtggctgctt tcgcccaaag ccggtttcag
     1861 acgttggcgg ctcaattcca aaaggccgaa acgcgaaagt ttgcccattt gcacgcgggc
     1921 gcggtctttt ttgagcgcat cgcgcaggac gttttcaaca tcgcgctgat gtttcggatt
     1981 ttccatgtcg atgaagtcga tgacgaccaa accacccaag tcgcgcaggc gcatttgacg
     2041 ggcaacctct tcggcggctt ccatattggt tttgaacgcg gtgtcttcaa tgtcagagcc
     2101 gcgtgtggcg cgggcagagt tgacgtcgat ggaaaccagg gcttcggtgt ggtcgatcac
     2161 aatcgcgccg ccggaaggca gactgacgct gcgtgagaac gcgctttcaa tttggtgttc
     2221 gatttggaaa cgggagaaca gcggcgtgtg gtcttgatag agtttcagac ggcctacatt
     2281 gcccggcatg acgtagctca tgaactcggc aacttggtcg tgaacttctt gattgtccac
     2341 caaaatctca ccgatatcgg gacggaaata gtctcgaatc gcacggatca gcagtgagct
     2401 ttccataaag agcaggtaag ggtcatggtg tgctttgcct gcttcttcaa tggcttgcca
     2461 gagttgtttg aggtagttca agtcccattc caactcttcc gcactgcggc cgatgccggc
     2521 agtacgggca atgatgctca tgccgtttgg aatgtcgagt tcggccatgg cggctttcaa
     2581 ctcttgacgc tcttcgcctt cgatacggcg ggatacgccg ccgccgcgcg ggttgttcgg
     2641 catcaatacc aaatagcggc cggccaggct gatgaaagtg gtcagcgccg cgcctttgtt
     2701 gccgcgttcg tctttttcga cttggacaat gacttccatg ccctctttga gcacgtcctg
     2761 aatacgcgcc ctgccgcctt cgtagtcgcg gaaatatgaa cgcgatactt ccttaaacgg
     2821 caaaaagccg tggcggtcgg ttccgtaatc gacgaaacat gcttccagcg acggctcgat
     2881 gcgggtaatg atacctttgt agatattgcc tttacgctgt tctttgccca gcgtttcgat
     2941 gtccaagtcc aaaaggtttt ggccatcgac gatggcaacg cgcagctctt cggcctgcgt
     3001 tgcgttgaat aacattcttt tcatgatcac ctcgtggacg ggcggcattc gggcgcgccg
     3061 gtccggttcg gcattccgta aggctgggtt ttccgatgtc ttcggataaa accggtaatc
     3121 agtttttgag ttgaaaatcc gcagggatgc acgttccgga gaaccgtgtg cggaagggtc
     3181 ggatacagaa ggctataaag atcgatgcgg cggtctgtct gccgcgttcc gagcggtatg
     3241 gtcggaaaaa tgggtgccgg cttcttcttg ttatcgtgat gcctgtgttt tcgggcggtt
     3301 tgcgtttggg gcttgggccc ggctgccgtc ttacttccgc gccgaaacgg caaaatcaat
     3361 tcaaacttga ctacgttctg cgcctgccgg ctgggaacag gcgcagggaa aatgctttgc
     3421 ggagtgcgtt tttaatataa aattccgttt taaagtaaac cgtttcagga ggcgcggcgg
     3481 gcgcgctttt tgctgaaacg gatgttcgga ttatagatga aaacgcacga aataagcaaa
     3541 gattcggtca gcttgatagg ggtcgccgaa catgaggcgg ggcaacgcct tgataactat
     3601 ctgataaaaa tcctcaaggg cgtgcccaag agccatatcc accgcattat ccgcgccggc
     3661 gaggtgcggt tgaacaagaa acgctgcaaa cccgacagcc gtattgcgga gggggatacg
     3721 gtgcggattc cgcctgtgcg cgtggcggag aaggaaatgc cgtctgaaag gcgtgccgcc
     3781 gtaccggcgc gtgcgtttga cgttgtttac gaagacgatg cgcttttggt catcgacaaa
     3841 ccgtccggcg ttgccgtcca cggcggcagc ggcgtgagtt tcggcgttat cgaacagttg
     3901 cgccgcgccc gtccggaggc gaagtatttg gagttggttc atcgtttgga caaggatacg
     3961 agcggcttgt tgatggtggc gaagaaacgc agcgcgctcg tcaaacttca cgaagccatc
     4021 cgtaacgacc accccaaaaa aatctacctt gcgctggggg tgggcaaact gccggacgac
     4081 aatttccatg tcaaactgcc cctgttcaaa tataccggcg cacaaggcga aaagatggtg
     4141 cgcgtcagtg cggacgggca gtcggcgcat acggtgttcc gtgtgttaag ccgtttttca
     4201 gacggcattt tgcacggtgt cgggctgtcg cacctgactt tggtgcgggc gacgttgaaa
     4261 acggggcgca cgcaccaaat ccgcgtccac ctgcaatctc aaggctgtcc gattgcgggc
     4321 gacgaacgct acggcgatta tcaggcgaac cgtcgtttgc agaagttggg tttgaagcgg
     4381 atgtttttgc acgcgtccga gctgcacttg aaccatccgc tcacgggcga gccgctggtg
     4441 ttgaaggcgg agctgccgct ggatttggca cagtttgcgg tgatgttgga aaacgggacg
     4501 aaaatgtgaa ccccgatgcc gtctgaagcc ttcagacggc atcgggacgt gaaagtatgt
     4561 gaagaagaac gaatatggtt gataaaaaaa gccctttgat tgctgtcagt gtcggcgaag
     4621 cgtcgggcga cctgttgggg gcgcacctga tacgcgccat ccgcaagcgt tgcccgcagg
     4681 cgcgttttgt cggtatcggc ggcgaactga tgaaggcgga aggtttcgag agcctttatg
     4741 atcaggagcg actggcggtg cgcggctttg ccgaagtggt caggcggctg ccggaaattt
     4801 tacggatacg cagggggctg gtacgggatt tgctgtcgtt gaaacctgat gtctttgtcg
     4861 gcatcgatgc gcccgatttt aatctgggtg tggcggagcg gctcaaacgg tcggggattc
     4921 cgaccgtgca ttatgtcagt ccgtcggttt gggcgtggcg gcgggaacgc gtgggcaaaa
     4981 tcgtgcatca ggtcaaccgc gtgctgtgcc tgttcccgat ggagccgcag ctttatcttg
     5041 atgcgggcgg acgtgcggag tttgtcggtc atccgatggc gcagcttatg cccttggaag
     5101 acgaccgtga aacggcgcgg aaaactttgg gcgtggatgc cggcatcccc gtattcgccc
     5161 tgctgcccgg cagccgcgtc agcgaaatcg actatatggc gccggtgttt tttcagacgg
     5221 cattattgtt gttggaacgc tatcccgccg cacgcttcct gctgcctgcc gcaacggagg
     5281 cgacgaagcg gcgtttggcg gaagttttgc agcggccgga gtttgccgga ttgccgctga
     5341 cggtaatcga cagacagtct gaaacagtgt gcagggcggc ggatgcggtg ctggtaacga
     5401 gcggtacggc aactttggag gtggcgttgt gtaagcgtcc gatggtcatc agctacaaga
     5461 tttcgccgct gacctatgct tatgtgaaac gcaaaatcaa agtgccgcat gtcggcctgc
     5521 cgaatatcct gttgggtaag gaggctgtgc cggaattatt gcaatctgaa gcaaaaccgg
     5581 aaaaactggc ggcggcgttg gcggactggt acgaacaccc cgataaggtt gccgcgctgc
     5641 aacaggattt cagggcgttg cacctgctgt tgaaaaaaga tacggcggat ttggccgcgc
     5701 gcgcggtttt ggaagaggcg ggatgttgag cggttaatgg attattttcc cgaagcagca
     5761 cgtattacaa aaaaaggggg agaaattgtg attaatggca catcaaacaa taagtattta
     5821 agaggaattc caaatgaaac agaactggcc cgaatgggat taaggttaaa atataatggt
     5881 cagttaactg attaattttg ttatatatga tttatgatta tagcttatac taatacgctt
     5941 acttaccttg tttcatttgt tcttcgtaaa tttctatttt aggcaattgt gtcagttcaa
     6001 tagggcaagt tgctccccac caaaaatgtt ctacataaaa ccaaggatta tctggaaaat
     6061 atagcaacat ctcttccata tccggccaaa ttcttcttaa ttcatctacc tgtgtttttg
     6121 gcgaaccagt taatattt
//
LOCUS       DAXIFS010000111         6137 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.111, whole genome shotgun sequence.
ACCESSION   DAXIFS010000111 DAXIFS010000000
VERSION     DAXIFS010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6137
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.111"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1407
                     /locus_tag="ACFOCA_001431"
     CDS             52..1407
                     /locus_tag="ACFOCA_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC45 family MFS transporter"
                     /protein_id="HFC6988138.1"
                     /translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
                     IFQTLGADPHNLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLFYGTLIAV
                     IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKSY
                     AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLIITSAF
                     TIFKVKEYDPETYARYHGIDVAANQEKANWFELLKTAPKAFWTVTLVQFFCWFAFQYM
                     WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
                     GYFGCLALGALGFFSVFFIGNQYALVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGT
                     YLGLFNGSICMPQIVASLLSFVLFPMMGGLQATMFLVGGVVLLLGAFSVFLIKETHGG
                     V"
     gene            1411..2439
                     /locus_tag="ACFOCA_001432"
     CDS             1411..2439
                     /locus_tag="ACFOCA_001432"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HFC6988139.1"
                     /translation="MSDTPATPATPATRDFGLIDGRAVTGYVLSNRRGTRVCVLDLGG
                     IVQEFSVLADGVRENLVVSFDDAASYADNPFQINKQIGRVAGRIRGAAFDINGRTYRV
                     EANEGRNALHGGSHGLAVTRFNAVAADGRSVVLRSRLQQSADGYPNDLDLDISYRLDE
                     DNRLTVSYRATALGDTVFDPTLHIYWRLDAGLHDAVLHIPQGGHIPADAEKLPVSTVS
                     DDLEVFDFSRPKPLDAAVAALRRETGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIY
                     SDRNGLVIFTAAPQDFARHDAGVYDALATEAQTLPDSLNWPEFGNIRLNKGDTREATI
                     AYGIESLS"
     gene            2673..4931
                     /locus_tag="ACFOCA_001433"
     CDS             2673..4931
                     /locus_tag="ACFOCA_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HFC6988140.1"
                     /translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
                     ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVKIFVDGQEVDL
                     AKNDVAGFSVELDMQHGVLRRSFTVFGVRFDVCKFLSVAQKELALIRWEAVSIDGKTH
                     QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDDRSYIATQTVTNPFGVEQFIVNAEQ
                     TFAGSFKALGGSQTDWQVSNSFEAEVGGTPKTFEKRVIVTTSRDYQGLEAVKAAGRAL
                     SEKVAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
                     LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
                     QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDEGYLAKEGLE
                     VLVEVSRFWADRVHFSKRNGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
                     AKYPRPDLNVRAAELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
                     PLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFNIDEKRRNFDFYEPMTVHESSLSPC
                     IHSILAAELGKEEKAVEMYRRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
                     TWGGKLSFAPFLPSAWTGYAFHINYRGRLIKVAVGKENVVFTLLKGEPLDLQVYGKDI
                     TLNGSHTAALEK"
     gene            4944..5609
                     /gene="pgmB"
                     /locus_tag="ACFOCA_001434"
     CDS             4944..5609
                     /gene="pgmB"
                     /locus_tag="ACFOCA_001434"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008801 - beta-phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HFC6988141.1"
                     /translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGISIDRKFNEQL
                     KGVSRDDSLKRILAHGGKTVSEAEFAELTRRKNDNYVEMIQAVKPEDVYPGILPLLET
                     LKANGKKIALASASKNGPFLLERMGLTHFFDTVADPAAVAHSKPAPDIFLAAAEGVGA
                     DIRRCIGIEDAAAGVAAIKASGALPIGVGKAEDLGSDIPLVSGTAELTYAYLQNVWAQ
                     SGR"
     gene            complement(5819..>6137)
                     /locus_tag="ACFOCA_001435"
     CDS             complement(5819..>6137)
                     /locus_tag="ACFOCA_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988142.1"
                     /translation="TTVYADKGYDSAENRQHLEEHQLQDGIMRKACRNRPLTETQTKR
                     NRYLSKTRYVVEQSFGTLHRKFRYARSTYFGLIKVSAQSHLKAMCLNLLKAANRLSAP
                     AAA"
BASE COUNT         1373 a         1773 c         1650 g         1341 t
ORIGIN      
        1 ctggtttttg ttaatccact atacttttca aatcaaaaaa ggatttacct tatgtcggaa
       61 tatacgcctc aaacagcaaa acaaggtttg cccgcgctgg caaaaagcac gatttggatg
      121 ctcagtttcg gctttctcgg cgttcagacg gcctttaccc tgcaaagctc gcaaatgagc
      181 cgcatttttc aaacgctagg cgcagacccg cacaatttgg gctggttttt catcctgccg
      241 ccgctggcgg ggatgctggt gcagccgatt gtcggccatt actccgaccg cacttggaag
      301 ccgcgtttag gcggccgccg tctgccgtat ctgttttatg gcacgctgat tgcggttatt
      361 gtgatgattt tgatgccgaa ctcgggcagc ttcggtttcg gctatgcgtc gctggcggct
      421 ttgtcgttcg gcgcgctgat gattgcgctg ttggacgtgt cgtcgaatat ggcgatgcag
      481 ccgtttaaga tgatggtcgg cgatatggtc aacgaggagc agaaaagcta cgcctacggg
      541 attcaaagtt tcttagcgaa tacgggcgcg gtcgtggcgg cgattctgcc gtttgtgttc
      601 gcgtatatcg gtttggcgaa caccgccgag aaaggcgttg tgccacaaac cgtggtcgta
      661 gcattctatg tgggcgcggc attactgatt attaccagtg cgttcacaat cttcaaagtc
      721 aaagaatacg acccggaaac ctatgcccgt taccacggca tcgatgtcgc cgcgaatcag
      781 gaaaaagcca actggttcga acttttaaaa acggcaccta aagcgttttg gacggttact
      841 ctggtacagt ttttctgctg gttcgccttc caatatatgt ggacttactc ggcaggcgcg
      901 attgcggaaa acgtctggca caccactgat gcgtcttccg taggttatca ggaggcgggc
      961 aactggtacg gcgttttggc ggcggtgcag tcggttgcgg cggtgatttg ttcgtttgta
     1021 ttggcgaaag tgccgaataa ataccataag gcgggttatt tcggctgttt ggctttgggc
     1081 gcgctcggct ttttctccgt tttcttcatc ggcaaccaat acgcgctggt gttgtcttat
     1141 accttaatcg gcatcgcttg ggcgggcatt atcacttatc cgctgacgat tgtgaccaac
     1201 gccttgtcgg gcaagcatat gggcacttac ttgggcctgt ttaacggctc tatctgtatg
     1261 ccgcaaatcg tcgcttcgct gttgagtttc gtgcttttcc cgatgatggg cggcttgcag
     1321 gccactatgt tcttggtagg gggcgtcgtc ctgctgctgg gcgcgttttc cgtgttcctg
     1381 attaaagaaa cacacggcgg ggtttgagcg atgagcgata cccccgctac ccccgctacc
     1441 cccgctaccc gcgatttcgg cctgatcgac gggcgtgccg taaccggcta tgtgctgtcc
     1501 aatcggcgtg gtacgcgtgt ctgcgtgctg gacttgggcg ggattgtgca ggaattttcc
     1561 gttttggcag acggcgtgcg cgaaaacctc gtggtgtcgt tcgacgatgc ggcttcctat
     1621 gcggacaatc cgtttcagat taacaagcag atagggcgcg tggccggacg catccgcggt
     1681 gcggcgttcg acatcaacgg caggacttac cgcgtggagg ccaacgaagg caggaacgcg
     1741 ctgcacggcg gttcgcacgg gctggccgtt acccgtttca acgcggtggc ggcagacggc
     1801 cgttcggtgg tgctgcgcag ccgcctgcaa cagtcggccg acggttatcc caacgatttg
     1861 gatttggata tttcctaccg cttggacgag gacaaccggc ttaccgttag ctatcgcgcc
     1921 accgcgctcg gcgacacggt gttcgacccg acgctgcaca tttactggcg gctggacgcg
     1981 ggcctgcacg atgcggttct gcatattccg cagggcggac atattccggc cgatgccgaa
     2041 aaactgcccg tctcaacggt ttcagacgac ctcgaagtat ttgatttcag ccggcccaag
     2101 ccgctggatg ccgccgttgc cgccctgcgc cgcgaaacgg gtcgggccgg ttttgacgac
     2161 gcttaccgcg tgccgtccga tataggccgt cccgccgctg tgttgcaagc cggacgccgc
     2221 cgtcgtatca gcatatacag cgaccgcaac ggcttggtca tctttaccgc cgccccgcag
     2281 gatttcgcgc ggcacgatgc gggcgtttac gacgcgctgg cgaccgaggc gcagacgctg
     2341 cccgacagcc tgaattggcc cgagttcggc aatattcgtc tgaacaaggg tgataccagg
     2401 gaggcgacga ttgcttacgg catcgaatcc ctttcttagg agcttcctaa caccggttgc
     2461 agacggcctt tttatagtgg attaacaaaa accggtacgg cgttgcctcg gcttagctca
     2521 aagagaacga ttctctaagg tgctgaagca ccaagtgaat cggttccgta ctatttgtac
     2581 tgtttgcggc ttcgtcgcct tgtcctgatt tttgttaatc cactataaga tttcaccatt
     2641 ccctcaaatc aatccaaaca ggagcttcat aaatgtacac aagaattatg gaaatcagcc
     2701 cttggacgct gcgttcggca aagctggaaa aagaacacaa acggctgcaa gagagcctga
     2761 ccagtttggg caacggctat atgggtatgc gcggcagctt tgaggaaacc tactccgccg
     2821 acagccactt gggcacctac atcgccggcg tgtggttccc cgacaaaacc cgcgtcggct
     2881 ggtggaaaaa cggctatccc aaatatttcg gcaaagccat caacgcgctc aatttcagca
     2941 aagtcaaaat ctttgtcgat ggtcaagagg tggacttggc gaaaaacgat gttgccggct
     3001 tctccgtcga actcgatatg cagcacggcg tgttgcgccg ctcgttcacc gtattcggcg
     3061 tgcgtttcga tgtgtgcaaa ttcctgtccg tcgcacaaaa agagctggct ctcatccgct
     3121 gggaagccgt atctatcgac ggcaaaaccc accaagtccg catcgattcc atcatcgatg
     3181 ccgacgtgaa aaacgaagat tccaactacg aagaaaaatt ctggcaagta ttggacaaag
     3241 gcgtttcaga cgaccgctcc tacattgcca cccaaaccgt caccaatccc ttcggcgtgg
     3301 aacaatttat cgtcaacgcc gagcaaactt tcgccggcag cttcaaagcc ctcggcggca
     3361 gccaaaccga ctggcaggtc tccaattctt tcgaggccga agtcggcggc acgcccaaaa
     3421 cctttgaaaa acgggttatt gttaccacca gccgcgatta tcagggcttg gaagcagtga
     3481 aagccgcagg ccgtgccttg tcggaaaaag tcgcaggcgt tgcgtttgaa accttgctgg
     3541 acgcgcacaa agcaggctgg ctgcaccgtt gggaaatcgc cgacgtggtc atcgaaggca
     3601 gcgacgaagc gcagcaaggc atccgtttca atctgttcca actgttctcc acctactacg
     3661 gcgaagatgc gcgcctgaac atcggcccca aaggctttac cggcgaaaaa tacggcggcg
     3721 cgacctattg ggataccgaa gcctatgccg taccgctcta cctcgcactg gcggaacccg
     3781 aagttacccg caacctgctg caataccgcc gcaaccaact gccgcaggcg cagcacaacg
     3841 cgcgcgaaca gggcttggcg ggcgcactct atccgatggt aacgtttacg ggtatcgagt
     3901 gccacaacga atgggaaatc accttcgagg aaatccaccg caacggcgcg attccttacg
     3961 ccatctacaa ctacaccaac tacaccggcg acgagggcta tcttgccaaa gaaggcttgg
     4021 aagtcttggt cgaagtgtcc cgcttctggg cggaccgcgt ccacttctcc aaacgcaacg
     4081 gcaaatacat gattcacggc gtaaccggcc cgaacgaata cgaaaacaac atcaacaaca
     4141 actggtacac caacaccctc gccgcatggg tattggacta cacccgcgaa gccttggcga
     4201 aatacccgcg tccggatttg aacgtgcgtg ccgccgagtt ggaaaaatgg gcggacatca
     4261 gcgcgaatat gtaccgtccg catgacgaag aactcggcgt attcgtgcaa cacgacggct
     4321 tcctcgacaa agacatccgc cccgtgtccg cgctttcgcc cgacgatttg ccgctcaacc
     4381 agaaatggtc gtgggacaaa atcctgcgtt cgccctttat caaacaggcg gacgtattgc
     4441 aaggcatcta tttcttcggc gaccgtttca atatcgacga aaaacgccgc aatttcgact
     4501 tctacgaacc gatgaccgtg cacgaaagct cgttgtcgcc gtgtatccac tctattctcg
     4561 ccgccgaact gggcaaagaa gaaaaagccg tggaaatgta ccggcgcacc gcacgcctgg
     4621 acttggacaa ctacaacaac gacaccgaag acggcctgca cattacttct atgaccggct
     4681 cgtggctcgc catcgtccaa ggtttcgccc aaatgaaaac ttggggcggt aaactcagct
     4741 tcgcaccgtt cctgccgagc gcatggacag gctacgcctt ccatatcaac taccgaggcc
     4801 gtctgattaa agtcgccgtc ggcaaagaaa acgtcgtctt caccctgctc aaaggcgagc
     4861 cgctcgattt gcaggtgtac ggcaaagaca tcacactcaa cggcagccat accgccgcgt
     4921 tggaaaaata aggagggcgc aaaatgacgt ttaccgcagt gctcttcgat ctcgacggcg
     4981 tcatcaccga caccgccgaa taccactacc gcgcgtggaa aaaactcgcc gaagaactgg
     5041 gcatcagcat cgaccgcaag tttaacgagc agctcaaagg cgtgtcgcgc gacgattcgc
     5101 tcaaacgcat cctcgcgcac ggcggcaaaa ccgtcagcga agccgagttc gccgaactga
     5161 cccgccgtaa aaacgacaac tacgtcgaga tgattcaggc agtcaaaccc gaagacgtgt
     5221 atcccggcat tttgcccctg ctggaaacat tgaaagcaaa cggcaaaaaa atcgccctcg
     5281 cgtccgccag taaaaacggc ccgttcctgc tcgaacgcat ggggctgacc cacttcttcg
     5341 acaccgtcgc cgaccctgcc gccgtcgcgc attccaaacc cgcccccgac atcttcctcg
     5401 ccgccgccga gggcgtgggc gcggacatcc gccgctgcat cggcattgaa gacgctgccg
     5461 caggtgtcgc cgccatcaaa gcctccggcg ccttacccat cggtgtgggc aaagccgaag
     5521 acttgggtag cgacatcccg ctggtgtccg gcaccgccga gctgacctac gcctacctgc
     5581 aaaacgtgtg ggcacagtcg ggcaggtaaa acgcgtcaga taaagtgtta aggaagtaaa
     5641 aggccgtctg aacagtgttt cagacggcct gagacctttg caaaattcct gtccctcccg
     5701 acagccgaaa cccaaacaca ggatttcggc tgttttcgta ccaaatacct cctaatttta
     5761 cccaaatatc cccttaatcc tgcccggata cccgataatc aggcatccgg gctgcctttt
     5821 aggcggcagc gggcgcactt aacctgttgg ccgctttcaa caggttcaaa cacatcgctt
     5881 tcaggtggct ttgcgcactc actttaatca gtccgaaata ggttgaccgc gcatagcgga
     5941 atttacggtg cagcgtaccg aagctctgtt cgaccacata acgggtcttc gacaaatacc
     6001 ggttgcgttt ggtttgcgtt tccgtcagcg gacggttgcg gcaggctttg cgcataatgc
     6061 cgtcctgcaa ctgatgttct tccagatgtt gccggttttc cgcactgtca tagcctttgt
     6121 cggcatagac ggtcgta
//
LOCUS       DAXIFS010000112         6115 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.112, whole genome shotgun sequence.
ACCESSION   DAXIFS010000112 DAXIFS010000000
VERSION     DAXIFS010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6115
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.112"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(131..718)
                     /locus_tag="ACFOCA_001436"
     CDS             complement(131..718)
                     /locus_tag="ACFOCA_001436"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HFC6988143.1"
                     /translation="MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIK
                     GTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTPKGQGKPVGELAAAIDAKWG
                     SFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
                     HAYYIDYRNSCPNYLKGFWEIVNWDEVAKRFAALS"
     gene            881..2287
                     /gene="dnaB"
                     /locus_tag="ACFOCA_001437"
     CDS             881..2287
                     /gene="dnaB"
                     /locus_tag="ACFOCA_001437"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFC6988144.1"
                     /translation="MNDYTAMPSEDREIGALSLPPHSMEAEQSVLGGLMLENPAWDRI
                     ADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITL
                     AQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQ
                     IAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPG
                     DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQS
                     VLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLI
                     VIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPM
                     MSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQ
                     FTKFDNAAYIPEEAKIED"
     gene            2596..3264
                     /locus_tag="ACFOCA_001438"
     CDS             2596..3264
                     /locus_tag="ACFOCA_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HFC6988145.1"
                     /translation="MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASH
                     AERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPNNKCDSGKKGQGMLAFGDKNGNK
                     GYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
                     NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTV
                     CQYK"
     gene            3294..3914
                     /gene="pilV"
                     /locus_tag="ACFOCA_001439"
     CDS             3294..3914
                     /gene="pilV"
                     /locus_tag="ACFOCA_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HFC6988146.1"
                     /translation="MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVA
                     SVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNYTLPHTLSAVDGDFA
                     IDAMKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLSGNAFSSNCDN
                     KANGDTLIKVLWVNDSAGDSDIARTNLETNGDNIVYTYQARVGGRE"
     gene            3911..4909
                     /locus_tag="ACFOCA_001440"
     CDS             3911..4909
                     /locus_tag="ACFOCA_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HFC6988147.1"
                     /translation="MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYLT
                     SRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFGCFNMSEHTKNDIIVDPSKQTQH
                     VPVKPGAKQENPLFSLEWANTNNTNNNTAKLIPIAESTDIKYPGFAQARPALIFQYGI
                     DDLDASAETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYA
                     VGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIRHMKVWYIYVSDCPEDDDAGKEETFRY
                     TDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL"
     gene            4888..5481
                     /locus_tag="ACFOCA_001441"
     CDS             4888..5481
                     /locus_tag="ACFOCA_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX N-terminal domain-containing pilus assembly
                     protein"
                     /protein_id="HFC6988148.1"
                     /translation="MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNT
                     EQRISANESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGKGLCTAVNVRT
                     NNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMVYGKGTQSVSKPPRYIIE
                     YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE"
     gene            5486..5959
                     /locus_tag="ACFOCA_001442"
     CDS             5486..5959
                     /locus_tag="ACFOCA_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX family type IV pilin"
                     /protein_id="HFC6988149.1"
                     /translation="MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTE
                     MVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKMNPKIAKKYSVSVRFVDKEKSRA
                     YRLVGVPKAGTGYTLSVWMNSVGDGYKCRDKASAEAYSETLFADAGCEAFSNRKK"
BASE COUNT         1680 a         1357 c         1572 g         1506 t
ORIGIN      
        1 cgtagcaact gaaccgtcat tcccacggaa gtgggaatct agaaataaaa agcagcaggc
       61 atttatcgga aataactgaa attcaatacc gcaaaaatct acccgaaatg atatagcgga
      121 ttaacaaaaa tcaggacaag gcggcaaaac gtttggcgac ttcgtcccag ttgacgattt
      181 cccagaaacc tttcaggtag ttgggacagc tgttgcggta gtcgatgtaa taggcgtgtt
      241 cccacacgtc gcaggtcagc agcggcgtgt tttcagtggt cagcggcgta gcggcgttgg
      301 aagtggaaac caaatccaat ccgccggcag gggtttttac cagccacgcc caaccggagc
      361 cgaaagtacc ggcagcgcag gcattgaacg cttcttggaa tttctcgaag ctgccccatt
      421 tcgcgtcgat ggcggcggcc agttcgccga caggtttgcc ttgacctttg ggcgtgaaac
      481 ccagccagta gaaggtgtgg ttccaagttt gtgccgcgtt gttgaacacg ccgcccgaag
      541 attttttcac aatctcttcc aaaggcaggt tttcaaattc ggtgcctttg atttgattgt
      601 tcaggttggt gatgtaggtt tgatggtgtt tgccgtagtg gaattccaaa gtctctttgc
      661 tcagatgcgg ggacaatgcg tccagttcat aaggcagttg cggcagctta tgttccattt
      721 tgtgctccta atattgtttt aaatgttgta ttttggcagt gttgctgcaa atagctcagc
      781 agcgcacata ttttacctgt tttgagggat ggaaaccaat taaacctgct ttacgctata
      841 atagaagatt gcaatttcgg cacgacagat aggatgtacc atgaacgatt acacagccat
      901 gccgtctgaa gaccgtgaga tcggcgcatt gtcgctgcct ccacattcga tggaggcgga
      961 acaatccgtt ttgggcgggt tgatgctgga aaatccggct tgggacagga ttgccgatgt
     1021 ggtttcggga gaggacttct accgccacga acaccgcctg attttccgat ccattgccaa
     1081 attaatcaat gagagccgtc ccgccgatgt gattacggtt caggaagatt tgcagcggaa
     1141 cgaagagctg gaagcggcgg ggggattcga atacctgatt acgctggcgc aaaacacccc
     1201 gtctgccgcc aacatccgcc gctacgccga aatcgtgcgc gagcgttcca ttatgcgcca
     1261 actcgccgaa gtgggaacgg aaatcgcacg cagcgcctac aatccgcaag gcagggacgc
     1321 ggggcagctt ttggacgagg cggaaaacaa agtgtttcaa atcgccgaaa gcaccgccaa
     1381 atccaagcag ggctttttgg agatgcccga tttgctgaaa gaagtcgtac agcgcatcga
     1441 tatgctctac tcgcgcgaca atcccgatga agttaccggc gtgccgacag ggttcatcga
     1501 cctcgacaaa aaaacctcgg gtctgcaacc cggcgacctg attatcgttg ccggtcgtcc
     1561 gtctatgggt aagaccgcct tttctatcaa tatcgccgaa cacgttgccg tagaaggcaa
     1621 gctgccggtt gccgtcttct caatggagat gggcggtgcg caactggtca tgcgtatgct
     1681 cggctcggtc ggacgcttgg atcaaagcgt cctgaaaacc ggcaggctcg aagacgaaca
     1741 ctggggtcgc ctgaacgaag cagtcgtcaa actctccgac gcgcccgtgt acatcgacga
     1801 gaccccgggt ttgactgcgc tcgaactgcg cgcccgtgcc cgccgtctcg cccgtcaatt
     1861 taacaataag cttggattga ttgtcatcga ctacctgcaa ctgatggcag gatccggccg
     1921 ttccgacaac cgagcttcgg agctgggaga gatttcacgt tcgctcaaag cgttggcgaa
     1981 agaattgcaa gtccccatca tcgccctgtc gcaattgagc cgcacggtcg aatcgcgtac
     2041 cgacaaacgc ccaatgatgt ccgaccttcg cgagtccggc gcaatcgagc aggatgccga
     2101 cctgattatg ttcatgtacc gcgacgaata ctacaaccag gactcaccca tgaaaggcct
     2161 tgccgaatgt atcatcggca aacaccgcaa cggtcccgtc ggtaaaatct tcctcacatg
     2221 gacgggacaa ttcaccaaat tcgacaatgc tgcctatatt cccgaggagg caaagataga
     2281 ggattaaatg gctatataaa aatttattag gcgaaatcag gcaaaatcgt ttaaaatcat
     2341 gctgagagat tgccctaaaa aataaaacgc ggtcttgagg catttttgca ttcagcccgc
     2401 atataattga aaatatagtg gattaacaaa aatcaggaca aggcaacgaa gccgcagacc
     2461 gtacaaatag tacggaaccg attcacttgg tgcttgagca ccttagagaa tcgttctctt
     2521 tgagctaagg cgaggcaacg ccgtactggt ttgaatttaa tccactatac attaccagtt
     2581 aacgttctat tgcttatgtg tacacgaaaa caacaaggtt tcacgctaac agagctgctc
     2641 atcgtgatgg tcattgcagc cattatggcg atgatagccc tccccaatat gagccaatgg
     2701 attgcatccc gccgcattgc cagtcacgcg gagcggattg ccaacctttt gcgtttctcc
     2761 aggggcgaag ccgtccggct caatctccct gtctatatct gtcctgttca agttaaaaaa
     2821 gacggtacgc ccaacaataa atgtgactcc ggcaagaagg ggcagggaat gttggctttc
     2881 ggcgacaaaa acggcaataa gggatatgac aatgatacgg cggatgttct tctccgcagt
     2941 gtggtattga atgatgatat caatgataag cggattaatt atgccttcaa ccatatcgct
     3001 ttcggtcaga ctcagccgac cgctgaccgt gtagtttgga cattcaatca aaacgggacg
     3061 ttcggttatt ctaccaatca ggatctcacg aatacttcca aatttgttta ctccgacggt
     3121 tatatccaaa tcgtgctgac agatgcgaga gcagtttcag atgccgataa gaaattccgt
     3181 tcggcggtgg ttttgattga cagcagcggc agggttgagg tttgtcctag aaacgatagg
     3241 cgtaccgtat gccaatataa atgattgttt tagtcggttt gggaaataaa aaaatgaaga
     3301 ataatgattg cttccgcctg aaaaaccccc agtccggtat ggcgctgata gaagtcttgg
     3361 tcgctatgct cgttctgacc atcggtattt tggcactatt gtctgttcag ttgcggacag
     3421 tcgcttccgt cagggaggcg gagacgcaaa ccatcgtcag ccaaatcacg caaaacctga
     3481 tggagggaat gttgatgaat ccgaccattg attcggacag caacaagaaa aactataatc
     3541 tttacatggg aaactataca ctaccgcata cactatcagc tgtggatggc gattttgcga
     3601 ttgatgccat gaaaactaag acgcagttgg cagaggcaca attgaagaga tttagttatg
     3661 agctgaaaaa tgccttgccg gatgcggcag ccatccatta cgccgtctgc aaggattcgt
     3721 cgggtaacgc gccgacattg tccggcaatg ctttttcttc aaattgcgac aataaggcaa
     3781 acggggatac tttaattaaa gtattgtggg taaatgattc ggcaggggat tcggatatcg
     3841 cccgtacgaa tcttgagacg aacggcgaca atatcgtata tacctatcag gcaagggtcg
     3901 gaggtcggga atgagacgta aaatgctaaa cgtaccaaaa ggcaattatg atggtatgaa
     3961 gggttttacc attattgaat ttttggttgc gggcatgctc agtatgattg tcctgatggc
     4021 ggtcggatcg agttacttga catcccggaa attaaatgat gcggcaaacg agcgtctttc
     4081 cgcgcaacag gatttgcgga atgcggcaac attgattgtc cgcgatgcaa gaatggcagg
     4141 gggcttcggt tgtttcaata tgtccgagca tactaaaaat gatattattg ttgatccaag
     4201 taagcaaact caacatgtcc ctgtaaaacc cggtgccaaa caagaaaatc cccttttttc
     4261 tttagagtgg gctaatacta ataatactaa taataataca gctaaattga ttcctattgc
     4321 tgaatccaca gatattaaat atccgggttt tgcccaggct cgtccggcat tgattttcca
     4381 atacggcatc gatgatcttg atgcgagtgc tgagactgtt gtagtcagca gctgttccaa
     4441 aatagcaaaa ccgggtaaga aaatatctac cttgcaagaa gcaaagagtg cattacagat
     4501 tactaatgat gataaacaaa atggaaatat cacccgtcaa aggcatgtgg tcaatgccta
     4561 tgcggtcggc aggattgccg gtgaggaagg tttgttccgc ttccaattgg atgataaggg
     4621 caagtggggt aatcctcagt tgctcgcgaa aaagattaga catatgaaag tgtggtatat
     4681 ctatgtttcc gactgtcctg aagatgacga tgccggcaaa gaggaaacat tcagatatac
     4741 ggataaattc aacagcgccc aagatgctgt tacgcccgcc ggggtggagg ttttattgag
     4801 tagcggtact gataccaaga ttgccgcttc ttcagacaat catatttatg cttaccgtat
     4861 cgatgcgaca atacgcgggg gaaatgtatg cgcaaacaga acactttgac gggaatcccg
     4921 acttctgacg gacagagggg gtttgcactg tttatcgtgc tgatggtgat gatcgtcgtg
     4981 gcttttttgg ttgtaactgc cgcgcagtct tacaataccg agcagcggat cagtgccaac
     5041 gaatcagaca ggaaattggc tttgtctttg gccgaggcgg ctttgcggga aggcgaactt
     5101 caggttttgg atttggaata tgatacggac agtaaggtta catttagcga aaactgtgga
     5161 aaaggtctgt gtaccgcagt gaatgtgcgg acaaataatg ataatgaaga ggcttttgac
     5221 aatatcgtgg tgcaaggcaa gcccaccgtt gaggcggtga agcgttcttg cactgcaaaa
     5281 tctacaggcc tgtgcattga caataaaggg atggtatatg ggaaaggcac gcaaagtgtc
     5341 agcaaaccgc cgcgttatat tatcgaatat ttgggcgtga agaacggaga aaatgtttat
     5401 cgggttactg ccaaggcttg gggtaagaat gccaataccg tggtcgtcct tcaatcttat
     5461 gtaagcaata atgatgagta ataaaatgga acaaaaaggg tttacattga ttgagatgat
     5521 gatagtcgtc gcgatactcg gcattatcag cgtcattgcc ataccttctt atcaaagtta
     5581 tattgaaaaa ggctatcagt cccagcttta tacggagatg gtcggtatca acaatatttc
     5641 caaacagttt attttgaaaa atcccctgga cgataatcag accatcaaga gcaaactgga
     5701 aatatttgtc tcaggctata agatgaatcc gaaaattgcc aaaaaatata gtgtttcggt
     5761 aaggtttgtc gataaggaaa aatcaagggc atacaggttg gtcggcgttc cgaaggcggg
     5821 gacgggttat actctgtcgg tatggatgaa cagcgtgggc gacggataca aatgccgtga
     5881 taaggcttct gccgaagcct attcggagac cttgttcgca gatgccggct gtgaagcctt
     5941 ctctaatcgt aaaaaatagg gctgttttgc caatgccgtc tgaaaatcaa tgttcagacg
     6001 gcatttttat gggtatagtg gattaacaaa aatcgggaca aggcgacgaa gccgcagaca
     6061 gtacggatag tacggaaccg attcacttgg tgcttcagca ccttagagaa tcgtt
//
LOCUS       DAXIFS010000113         5985 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.113, whole genome shotgun sequence.
ACCESSION   DAXIFS010000113 DAXIFS010000000
VERSION     DAXIFS010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5985
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.113"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            425..1648
                     /locus_tag="ACFOCA_001443"
     CDS             425..1648
                     /locus_tag="ACFOCA_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HFC6988150.1"
                     /translation="MSAQSQNNHTSPLVVLTTLFFMMGFITCMNDILIPHLKEIFDLS
                     YVQAMLIQFCFFTAYAVMSIPMGAFVGKVGYKNGVIGGFLLTAVGCLLFYPAAGSHSY
                     AVFLGALFILASGVTLLQVAGNPYVTLLAKPGKESATLTLVQAFNALGTTIAPQIGAF
                     LILADATQTVSKAEQISSVQIPYLGLAGLLIILAVFVKMIRLPDARKIAAEESAHNHD
                     GKTGVWQYKHLVFGTAGIFCYVGAEVSIGSLMVNVLGYLKGLDHASAAHYLSFYWGGA
                     MVGRFLGSAVMAKFAPNRYLAFNASAAVVLLAIAMATGSGNADVAMWSLLAIGFFNSI
                     MFPTIFSLATKGLGKFTNAASGVLCTAIVGGAVVPVVQGWVADTYTLMSSFVVSVICY
                     LYIVFFAVYGYRADK"
     gene            1939..3318
                     /gene="nhaC"
                     /locus_tag="ACFOCA_001444"
     CDS             1939..3318
                     /gene="nhaC"
                     /locus_tag="ACFOCA_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HFC6988151.1"
                     /translation="MFAFKSLLDMPRGEALAVVVALIAAMGYTIISLEWLPHMSIIAA
                     IVVLILYGLARGLKYNDMQQGMIGALNQGMGAIYLFFFIGLMVSALMMSGAIPTLMYY
                     GFGLISPTYFYFSAFALCSVIGVSIGSSLTTCATVGVAFMGMAAAFQADMAMTAGAIV
                     SGAFFGDKMSPLSDTTGISASIVGIDLFEHIKNMMYTTIPAWLISAALMLWLLPNVAA
                     QDLNSVESFRSQLEATGLVHGYSLIPFALLVILALMRINAVVAMLFTVMVAVAVTYLH
                     STPDLRQLGAWFYGGYKLEGEAFKDVVKLISRGGLESMFFTQTIVILGMSLGGLLFAL
                     GVIPSLLEAIRTFLTNAGRATFSVAMTSVGVNFLIGEQYLSILLSGETFKPVYDRLGL
                     HSRNLSRTLEDAGTVINPLVPWSVCGVFISHALGVPVWEYLPYAFFCYLSLALTLLFG
                     WTGLTLSKK"
     gene            complement(3447..4271)
                     /locus_tag="ACFOCA_001445"
     CDS             complement(3447..4271)
                     /locus_tag="ACFOCA_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HFC6988152.1"
                     /translation="MDGTQSKPKFFERLISRLAGEPDSAEDVLTLLRQAHEQEVFDAD
                     TLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD
                     EVLGILHAKDLLKYMFNPEQFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMAIVID
                     EYGGTSGLVTFEDIIEQIVGEIEDEFDEDDSADNIHAVSSERWRIHAATEIEDINTFF
                     GTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRVK"
     gene            complement(4273..4788)
                     /gene="ybeY"
                     /locus_tag="ACFOCA_001446"
     CDS             complement(4273..4788)
                     /gene="ybeY"
                     /locus_tag="ACFOCA_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFC6988153.1"
                     /translation="MKRTKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWAWSAL
                     KNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDL
                     IICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAA
                     GFPNPYQEDEY"
     gene            4907..5842
                     /gene="hemC"
                     /locus_tag="ACFOCA_001447"
     CDS             4907..5842
                     /gene="hemC"
                     /locus_tag="ACFOCA_001447"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFC6988154.1"
                     /translation="MNPKKLVIASRESLLAMWQAKHIQGRLKALYPDCEVEILGMTTR
                     GDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERA
                     NPFDAFVSNQYARLEEMPKGAVVGTSSLRREAQLRARYPHLLIKPLRGNVQTRLSKLD
                     NGEYDAIILAAAGLQRLKLDGRIRMILSESDSLPAAGQGALGIEIAAHREDLYEVLKP
                     LNHDTTHACVTAERALARALGGSCQVPLAAYCTEENGLLTLRGLVGHPDGSVVLQADA
                     QAPAEYADALGRAVAKKLADDGARELIGAVLNTEN"
BASE COUNT         1244 a         1447 c         1634 g         1660 t
ORIGIN      
        1 cgtcgccttg tcctgatttt tgttaatcca ctatattttc acgcccccgc cgaagggcgg
       61 aggacggtgc aaaaaatacg gcacagccgt atgccccttt tttgtcgggc atacgacatt
      121 ctttccgctc cggttttgat gccacgatgc ggcatttccg aattttccgg atacggcggc
      181 ggattttcat tttattggga acggtttttg caagtccgcc ggaatttttt aaaatctatt
      241 aaaatctatg caagcaactg taaaatatta atttctgctg cttgaatttc agatcggcgc
      301 attgcctgca tccgataaag tttgcaaaat gttcaaatat cagtatgatt tgcattgccg
      361 ttaagaaatg tcaatttcta ttttcttgaa acgggtaata ttccgacacc acgaaaggca
      421 aatcatgtct gcgcaatcac aaaacaatca tacgtcccca ttggtcgtct tgaccacgct
      481 gttcttcatg atgggtttta ttacctgcat gaacgacatc cttatccctc atttgaaaga
      541 aattttcgac ctgtcttacg ttcaggcgat gctgatccaa ttctgtttct ttaccgccta
      601 tgcggtgatg tccatcccga tgggggcttt tgtcggcaaa gtcggctaca aaaacggcgt
      661 tatcggcggc tttctgctga cggcggtcgg atgcctgctg ttttatcctg ctgcgggcag
      721 ccattcttac gcggtatttt tgggcgcgtt gtttattttg gcttccggcg taacgctgct
      781 tcaggttgcc ggtaatcctt atgttaccct gctggcgaaa cccggcaagg aatcggcaac
      841 actgacgctg gttcaggcgt ttaacgcttt gggtacgacc attgcgccgc aaatcggcgc
      901 gttcctgatt ttggcggacg caacccaaac cgtcagcaag gcggaacaga tttcttccgt
      961 acagattccc tatttgggac tggcggggct gctgattatc cttgccgttt tcgtgaaaat
     1021 gatccggctg cccgacgcgc gcaaaattgc cgccgaggaa agcgcgcaca accacgacgg
     1081 caaaaccggc gtatggcaat acaaacatct cgtgttcggt acggcaggca ttttctgcta
     1141 tgtcggcgcg gaggtgtcta tcggttcgtt gatggtcaac gtattgggtt atctgaaagg
     1201 gctggatcat gcttctgccg cgcattacct gtcgttctat tggggcggcg cgatggtcgg
     1261 acgtttcctc ggttcggcgg tgatggcgaa attcgcgccc aaccgttatt tggcgtttaa
     1321 cgcatcggct gcggtcgtac tgcttgccat cgcgatggcg acgggtagcg gcaatgcgga
     1381 tgtggcgatg tggtcgctgc ttgccatcgg ttttttcaac tcgattatgt tcccgacgat
     1441 tttctctttg gcaaccaaag gattgggaaa atttaccaac gcggcttccg gtgtactgtg
     1501 taccgcgatt gtcggcggtg cggtcgttcc tgtcgtgcag ggctgggtgg cagatactta
     1561 caccctgatg tcttcgtttg tcgtttccgt catctgttat ctgtatatcg tgttttttgc
     1621 ggtgtacgga tatagggcgg acaaataatc tttttcttga gaaatgtcgt ctgaacatct
     1681 ttcagacggc atttttgcgt accggtgttt gcggcgtgtg tgccgaggtt ttaatatttc
     1741 aatccataaa agtcttatat gccaacaaac aaaaaaataa aaaattatat ttcaaaaaaa
     1801 ttaatttaaa ttgagaaaat tgccgttttg tttctgtccg gcttttgtaa aacgctaaaa
     1861 tgccgtctga aaacgtcggg cggattcggt atagtgtgtt agaatccgtt aactttatat
     1921 caaatcgggc aaagaatcat gtttgctttc aaatccttac tcgatatgcc gcgcggtgag
     1981 gcacttgccg tcgtcgtcgc tctgattgcc gcgatgggct ataccatcat ttcattggag
     2041 tggctgccgc atatgtccat tattgccgcc atcgtcgtgc tgattttgta cggcttggcg
     2101 cgcggtttga aatacaacga tatgcagcag ggcatgatag gcgcgttgaa tcagggtatg
     2161 ggcgcgattt acctgttttt cttcatcggg ctgatggtca gcgcactgat gatgagcggt
     2221 gcgattccga cgctgatgta ttacggtttc gggctgattt ctccgactta tttttatttt
     2281 tccgccttcg cgctgtgttc cgtcatcggc gtgtccatcg gcagcagcct gaccacctgc
     2341 gccactgtcg gcgttgcctt tatggggatg gcggcggcgt ttcaggccga tatggcgatg
     2401 acggcgggcg cgattgtttc gggcgcattt tttggcgaca aaatgtcccc gctttcggat
     2461 acgacgggta tttccgcgtc catcgtcggc atcgacttgt ttgagcacat caaaaatatg
     2521 atgtacacca ccatccccgc gtggctcatt agtgcggcac tgatgctttg gcttttgccg
     2581 aatgtcgccg cgcaggattt gaacagcgtc gaatccttcc gcagccagct tgaagccacg
     2641 ggattggtgc acggctattc gctgattccg tttgcgctgt tggtcatttt ggcattgatg
     2701 cgcatcaacg ccgtcgtcgc catgctcttt accgtcatgg ttgccgttgc tgtaacgtat
     2761 ctgcacagca cgcccgatct gcgtcagctc ggtgcgtggt tttacggcgg ctacaaactc
     2821 gaaggcgaag cgtttaaaga tgttgtcaaa ctgatttcgc gcggcggttt ggaaagtatg
     2881 tttttcacgc aaaccatcgt gattctcggg atgagtttgg gcggactgtt gtttgcgctc
     2941 ggtgtgattc cttccctgtt ggaggccatc cgtaccttct tgacgaatgc cggacgcgcg
     3001 acgttcagcg ttgccatgac ttcggtcggg gttaatttcc tgattggcga acaatatttg
     3061 agcatcctgc tttctggaga aacgtttaaa cccgtttacg acaggctcgg actacattcc
     3121 cgcaatctgt cgcggacgct ggaagatgcg gggacggtga ttaacccgct cgtaccgtgg
     3181 agcgtatgcg gcgtgttcat cagccacgcg ctgggcgtgc cggtttggga atatctgccg
     3241 tatgcctttt tctgctattt gagtttggct ttgaccctgt tattcggttg gacggggctg
     3301 actttgagca aaaaataagc ggataagcga aatgccgtct gaaacttgca acggtttcag
     3361 acggcatttt tatgtttggc ggatggggcg gattgaaaca gaaaacgccc gtaccgtcat
     3421 cctaaactgt gcagaaacgg cggtgcttac ttcacgcggg tcgccatcag cgtatgcagg
     3481 cggcggttgt cggcgcgtgc gacggtgaac tgcaaaccgc cgataaggac tttttcgccg
     3541 cgcacgggca gatgtcccaa ctcttgaatg accaggccgc caatggtgtc ggcttcttcg
     3601 ctgctgtatt ccgtgccgaa gaaggtgttg atgtcttcga tttcggtagc tgcatggatg
     3661 cgccagcgtt cggaagaaac ggcgtggata ttgtcggcgc tatcgtcttc gtcaaactcg
     3721 tcttcgattt cgccgacgat ttgctcgatg atgtcttcaa aggtgaccaa acccgacgtg
     3781 ccgccgtatt cgtcgatgac gatcgccata tggttgcgct gttcgcggaa ctcttttaaa
     3841 agggcggtca gcgatttgcc ttcggggacg aagacggcag ggcgcaatat cgatttgagg
     3901 tggaactgct cggggttgaa catatatttg agcaggtctt tggcgtgcaa aatacccaaa
     3961 acttcgtctt tgtcttcacc gatgacgggg aagcgcgaat gggcggtatc gataacgtag
     4021 gcggtgatgc gttcgatgct gtcgttttct tttaaaacgt tcatacggct gcgcgtaatc
     4081 atcgcgtcgc gcacttccaa atcggaaaaa tcgaggactt tttccaacct taaaagcgta
     4141 tccgcatcaa aaacttcctg ctcgtgcgct tggcgcagca gggtcaatac gtcttcggcg
     4201 gagtcgggct cgccggcaag tcgggagatc aggcgttcga aaaacttggg tttcgactgc
     4261 gtaccgtcca ttttaatatt cgtcctcttg gtaggggttg gggaagcctg ccgccagcat
     4321 caggcggatt tcttcggctt ccattatttc ggcttcatcg tcttcgatgt ggtcgtagcc
     4381 catcaggtgc aaaacgccgt gtatggtcag gtgggcaaaa tgccgttcgg gcgttttgcc
     4441 ctgttcggcg gcttctttca aaaccacttg cgggcagata atcaaatcgc cgtacagttt
     4501 ttccgaaact tggcagggca ggatttcgcc ttcgttgagc gcgaaactca atacattggt
     4561 ggcgtaatct ttgccgcggt agtcgcggtt gtaggctcgg gcttcttctt cgtccagaag
     4621 aatcaggctg atgtcggcgc ggcggtattc atttttcaag gcagaccacg cccagcggta
     4681 gaaatcgcgt tcggctggga tgccggcggc ggaagaggcg ttttcaaagt tcaaatggaa
     4741 acgttgccgc tgcaacgtta agaaagggta ttttttggtg cgtttcattg tggcgggttt
     4801 cgtgttttgt gggtgtaaat ataacataga cctgacggtg ccgtctgaag aaacgttcaa
     4861 aatatgatag acttcacgcc gtttccattc tttgaacgca ttgaacatga acccgaaaaa
     4921 actcgtcatc gccagccgcg aaagcctgct tgctatgtgg caggcaaagc atatccaagg
     4981 ccgtctgaag gctctgtatc ccgattgcga agtcgagatt ttgggcatga ccacgcgcgg
     5041 cgatcagatt ttggacaaaa ctttgtcaaa agtcggcggt aaaggcttgt ttgtcaaaga
     5101 gttggaacag gctttatatg acgggcgcgc cgatttggcg gtgcattcga ttaaggacgt
     5161 gccgatggat ttgcctgaag gtttcgcgct tgccgccatc ggcgaacgcg ccaatccgtt
     5221 tgacgcgttt gtgtccaacc aatacgcgcg tttggaagaa atgcccaaag gcgctgtcgt
     5281 cggtacatcc agcctgcgcc gcgaagccca gttgcgcgcg cgctatccgc atttgcttat
     5341 caaacctttg cgcggcaatg tgcaaacccg tttgtccaaa ctcgataacg gcgaatacga
     5401 cgcaattatt ttggccgccg ccggtttgca gcgtctgaaa ttggacggac gcatccgcat
     5461 gattttgtcg gaatccgaca gcctgcctgc cgccggacaa ggcgcattgg gtatcgaaat
     5521 tgccgcgcac cgcgaagatt tgtatgaggt tttaaaaccg ctaaaccacg ataccacaca
     5581 cgcctgcgtt acggccgaac gagctttggc gcgcgctttg ggcggaagct gccaagtgcc
     5641 gctggccgca tattgcacgg aagaaaacgg cttgctgacc ttgcgcggac tggtcggaca
     5701 ccccgacggt tcggttgtgt tgcaggcgga cgcgcaagcc cctgccgaat atgccgacgc
     5761 gctcggacgc gctgtcgcta agaaattggc ggacgacggt gcgcgggaat tgattggagc
     5821 agtattgaat acggaaaatt gattttatcg aaaatttaaa taaaataata taagttattg
     5881 tttttaatca atttgtttca tcagttttac tcgccttatt tcgtcattcc cgcgcaggtg
     5941 ggaatccagt ttgctcggtt tcagttgttt ctaatcaatt cttgc
//
LOCUS       DAXIFS010000114         5933 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.114, whole genome shotgun sequence.
ACCESSION   DAXIFS010000114 DAXIFS010000000
VERSION     DAXIFS010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5933
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.114"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            55..1593
                     /gene="murJ"
                     /locus_tag="ACFOCA_001448"
     CDS             55..1593
                     /gene="murJ"
                     /locus_tag="ACFOCA_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFC6988155.1"
                     /translation="MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVA
                     FKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALG
                     ILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIP
                     AFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPK
                     LNFKDAAVNRVMKQMAPAILGVSVAQISLVINTIFASYLQSGSVSWMYYADRMMELPS
                     GVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVA
                     TLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLASGFYARQNIKTPVKIAIFTLI
                     CTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKMLL
                     SLAVMGGGLWAAQACLPFEWVRAGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFK
                     RVES"
     gene            1726..2682
                     /locus_tag="ACFOCA_001449"
     CDS             1726..2682
                     /locus_tag="ACFOCA_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HFC6988156.1"
                     /translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPAYRRELLPDSTGKT
                     KVAYDFSDGISPDAPLVVLFHGLEGSSGSHYAVELMLAVRDRGWNGAVVHFRSCGGIA
                     NTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGERGENALPQAAA
                     VISAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKARSLHGFQTAFAAGCKTLGEFDD
                     RFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAV
                     TLFQPAHGGHAGFVGSTGGRLHLQWLPQTVLSYFDSFRTNRR"
     gene            2733..3515
                     /gene="trpC"
                     /locus_tag="ACFOCA_001450"
     CDS             2733..3515
                     /gene="trpC"
                     /locus_tag="ACFOCA_001450"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFC6988157.1"
                     /translation="MTDILNKILTAKAQEVAAQKAAVNAEHIRALAAEAAPVRSFIGS
                     IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQG
                     SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVA
                     HELGMTVLLELHDESELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
                     TESGITGKADVEFMQSRGVHTFLIGETFMRADNIEAEVGKLF"
     gene            3581..5881
                     /gene="recQ"
                     /locus_tag="ACFOCA_001451"
     CDS             3581..5881
                     /gene="recQ"
                     /locus_tag="ACFOCA_001451"
                     /EC_number="5.6.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HFC6988158.1"
                     /translation="MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGG
                     GKSLCYQIPALMREGVAVVVSPLIALMNDQVASLHVAGIEAAAVNSGTSADEAREIAD
                     KLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGM
                     LAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFISSFDRPNIYYQVIEKNNGKK
                     QLLEFIRKEMAGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRF
                     THEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCY
                     GLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLSVCETAACRRVLLLKHFGEESEPCG
                     HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNLLRGKSDDWIRGNRHEQLS
                     TFGIGAELSDKEWRSVIRQCISLGYLTVNIARYQALQLTEAAKKVLKGETEVMLRPLK
                     RGKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
                     QNLNGLHDIYGLGEAKTERFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWR
                     YEQARAENCALHAVLSDESLADMLADTPETETDLEGVHGLGSVRAAKYGRDILAVCRP
                     FSDGIDETAKHKRRLMRALIQWCNETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
                     AVYGVGEEKAARYGAAVLAVLERNAV"
BASE COUNT         1295 a         1761 c         1619 g         1258 t
ORIGIN      
        1 aaagtctgat cctgccgccc taaagggcgg ggtttcaacc gaaaaggaaa tacgatgaat
       61 atgctgggag ctttggcaaa agtcggcagc ctgacgatgg tgtcgcgcgt tttgggattt
      121 gtgcgcgata cggtcattgc gcgcgcattc ggcgcgggta tggcgacgga tgcgtttttt
      181 gtcgcattca aactgcccaa cctgctgcgc cgcgtgtttg cggaaggggc gtttgcccaa
      241 gcgtttgtgc cgattttggc ggaatataag gaaacgcgtt cgaaagaggc gacggaggct
      301 tttatccgcc atgtggcggg gatgctgtcg tttgtgctgg tcatcgttac cgcgctgggc
      361 atacttgccg cgccttgggt gatttatgtt tccgcacccg gttttgccaa agatgccgac
      421 aaatttcagc tctccatcga tttgctgcgg attacgttcc cctatatctt attgatttca
      481 ctttcctctt ttgtcggctc ggtactcaat tcctatcata aattcagcat tccggcgttt
      541 acgcccacgt ttctgaacgt gtcgtttatc gtattcgcgc tgtttttcgt gccatatttc
      601 gatcctcccg ttaccgcact ggcatgggcg gtttttgtcg gcggcatttt acaactcggc
      661 ttccaactgc cctggctggc gaaactgggt tttttgaaac tgcccaaact gaatttcaaa
      721 gatgcggcgg tcaaccgcgt catgaaacaa atggcacctg cgattttggg cgtgagcgtg
      781 gcgcagattt ctttggtgat caacacgatt ttcgcgtctt atctgcaatc gggcagcgtt
      841 tcatggatgt attacgccga ccgcatgatg gagctgccca gcggcgtgct gggggcggca
      901 ctcggtacga ttttgctgcc gactttgtcc aaacactcgg caaaccaaga tacggaacag
      961 ttttccgccc tgctcgactg gggtttgcgc ctgtgtatgc tgctgacgct gccggcggcg
     1021 gtcggactgg cggtgttgtc gttcccgctg gtggcaacct tgttcatgta ccgcgaattc
     1081 acgctgtttg acgcgcagat gacgcaacat gcgctgattg cctattcttt cggtttaatc
     1141 ggtttgatca tgattaaagt gttggcatcc ggcttttatg cgcggcaaaa catcaaaacg
     1201 cccgtcaaaa tcgccatctt cacgctcatc tgcacgcagt tgatgaacct tgcctttatc
     1261 ggcccactga aacacgtcgg actttcgctt gccatcggtc tgggcgcgtg tatcaatgcc
     1321 ggattgttgt tttacctgtt gcgcagacac ggtatttacc aacctggcaa gggttgggcg
     1381 gcgttcttag caaaaatgct gctctcgctc gccgtaatgg gcggcggact gtgggcggcg
     1441 caggcttgcc tgccgtttga atgggtacgc gccggcggaa tgcggaaagc ggggcagctc
     1501 tgcatcctga ttgccgtcgg cggcggactg tatttcgcat ctctggcggc tttgggcttc
     1561 cgtccgcgcc atttcaaacg ggtggaaagc tgaccgatgc cgatatcctt tttcggaaaa
     1621 cgctttttcc gcgcctatat tcgggcgcgc atcccccacg tccgcaccag ccggacgggc
     1681 tgccgcatca tcaatgccgt ctgaaaacaa gaaaaccgat accttatgat tttaacaccg
     1741 ccggacacgc cctttttcct ccgcaacggc aatgccgaca cgattgccgc caaattcctg
     1801 caacgccccg cacctgcata ccgccgcgag ctgcttccag acagcacggg taaaaccaaa
     1861 gtcgcctacg acttttcaga cggcatttcg cccgacgcac cgctggtcgt gctgtttcac
     1921 ggtttggaag gaagcagtgg cagccattac gcggtcgaac tgatgctcgc ggtacgcgat
     1981 cgcggttgga acggcgcagt cgtccatttc cgcagctgcg gcggcattgc caacaccgct
     2041 ccggtgttct accacttggg cgataccgcc gaaatcgcct ttactttgga cacgcttgcc
     2101 gcgcgttacc gtgaaatata cgccgtcggc gtatcgctgg gcggcaacgc gctggcaaaa
     2161 tatttgggcg aacggggcga aaacgcgctg ccgcaagccg ctgccgtcat ctccgcaccc
     2221 gtcgatgcag aggcggcagg cagacgcttc gacagcggca tcacgcggct gctctacacg
     2281 cgctacttcc tccgcaccct gatacccaaa gcacggtcgc tccacggttt tcagacggca
     2341 tttgccgcag ggtgcaaaac actgggcgag tttgacgacc gcttcaccgc accgctgcac
     2401 ggctttgccg accggcacga ctactaccgc caaacttcct gcaaaccgct gctcaaacac
     2461 gttgccaaac cgctgctcct gctcaatgcc gccaacgacc ccttcctgcc gcccgaagcg
     2521 ctgccgacac cggacgaagt gtccgaagcc gttaccctgt tccagccggc acacggcgga
     2581 cacgccggct ttgtcggcag caccggcggc aggctgcacc tgcaatggct gccgcagacc
     2641 gtcctgtcct atttcgacag cttccgcaca aacaggcggt aacggtttga tgctaatatt
     2701 ccccctttcc ccggacaaat acggaacacg acatgaccga catcctcaat aaaatcctta
     2761 ccgccaaggc acaggaagtt gccgctcaaa aagccgccgt caacgccgaa cacatccgcg
     2821 cacttgccgc agaagccgcg cccgtccgca gcttcatcgg ttcgatacgc ggcaaacacc
     2881 gcctaaacct gcccgccgtc attgccgaaa tcaaaaaggc aagcccgagc aaaggcctga
     2941 tccgtccgga cttccgaccg gccgagattg cacgcgccta tgaaaacgcc ggggcggcgt
     3001 gtttgtccgt actgaccgac gaaccctatt tccaaggttc gcccgaatac ctcaaacagg
     3061 cgcgcgaagc cgtatcgctg cccgtgctgc gcaaagactt catcatcgac gaatatcagg
     3121 tttatcaggc gcgcgcatgg ggggcggatg ccgtcctgct gattgccgca gcactggaac
     3181 aggaacaatt ggaacgcttt gaagcggtgg cgcacgaatt gggcatgacc gtcctgctcg
     3241 agctgcacga tgaaagcgaa ttggaaaaat gccgcaacct gaccacgccg ttgtggggtg
     3301 taaacaaccg caacctgagg acttttgaag tctccctcga ccaaaccctg tcgctgctgc
     3361 ccgcgctgga aggcaaaacc gtcgttaccg aaagcggcat tacaggcaag gcggatgtgg
     3421 aatttatgca atcgcgcggc gtgcatacct tcctgatcgg cgaaacgttt atgcgtgccg
     3481 acaatattga ggcggaagta ggcaaactct tctaaatccc gatttcagac ggcattccct
     3541 ttctttaacc gacacaccct ttaccggaca cggaaccatc atgcaccgac cgaccgccaa
     3601 acagattctg cacgaagtat ttggttatcc cgaatttcgc ggcaggcagg aggctgtcat
     3661 caatactttg gcaggcggcg ggagtttgac ggtgctgatg ccgacgggcg ggggcaagtc
     3721 tttgtgttac cagattcccg cgctgatgcg cgaaggcgtg gcggttgtcg tatcgccgct
     3781 gattgcgctg atgaacgacc aagtggccag cctgcatgtg gccgggattg aagcagcggc
     3841 agtcaacagc ggcacatcgg cagatgaggc gcgcgagatt gccgacaagc ttgcccaagg
     3901 ccgtctgaaa ctgctttatg tcgcgccgga acgcttggtt accgatcgct ttttgcgttt
     3961 tctcgaccaa caaaccgtca gcctgtttgc cattgatgag gcgcattgcg tcagccagtg
     4021 gggacacgat ttccgccccg aataccaaca gctcggcatg cttgccgaac gctatccgaa
     4081 cgtcccgcgc atcgccctga ccgccaccgc cgatgccgcc acgcgcgccg acatcaagca
     4141 ttatctgcac ttggacgatg cgcccgaatt tatttccagc ttcgaccgcc cgaatattta
     4201 ttatcaggtt atcgaaaaaa acaacggcaa aaaacaactg cttgaattta tccgcaaaga
     4261 aatggcgggg caaagcggca ttgtgtattg cctaagccgc aaaaaggttg aagatgtggc
     4321 gcagtttttg cgtgaaaacg gattaaacgc gattccgtat catgctggtt tgagcatgga
     4381 cgtgcgcgag gaaaaccaac gccgctttac gcatgaagac aatattatcg tggtggcgac
     4441 cgtggcgttc ggcatgggca tagacaaacc cgacgtgcgc tttgtcgccc atctcgatat
     4501 gccccagagt gtcgaacatt tctatcagga atcggggcgt gccggcaggg acgggctgcc
     4561 tgccgcgagc tggctgtgtt acggcttgaa cgattgggtg ttgctgcgcg aacggattgc
     4621 cgaaggcaac agcgatgagg tgcaaaagca aatcgaaatg caaaaactcg atgccatgct
     4681 ttccgtctgc gaaaccgccg cctgccgccg cgtactgttg ctcaaacatt ttggcgaaga
     4741 atccgaaccc tgcggccatt gcgacaactg cctgcatccg cctgtgcggt ttgacggcac
     4801 ggtgttggta caaaaattac tcagctgcgt gtaccgcgcc ggacaacgtt ttgccgccgg
     4861 ttacatcacc aaccttttgc gcggtaaaag cgacgattgg atacgcggca accggcacga
     4921 acaactgtct accttcggca tcggtgcgga gttgtccgac aaagaatggc gcagcgtcat
     4981 ccgccagtgc atcagcctcg gctacctcac cgtcaacatt gcccgatatc aggcattgca
     5041 actgaccgaa gccgccaaaa aagtcctcaa aggcgaaacc gaagtgatgc tgcgtccgct
     5101 caagcgcggc aagcccgccg cccgcaccct caaagacaac tggctgcgta ccgaacgcga
     5161 agaacgcctg tggcaggcat tgcgcgtttg gcgtatgaaa caggcagaag ccgaaggcat
     5221 ccccgcctat atgattttcg gcgacaaaac cctgcgcgac cttgtcgaaa aaatgccgca
     5281 aaacctcaac gggctgcacg acatctacgg cttgggcgaa gccaaaaccg aacgtttcgg
     5341 acacggcata ctcgaagtct gccgcaacgc cgccggcttc agccgcgacg cggtcatccg
     5401 tccgcaaacc gaacgcgaac aacaactgcg tcaaaaactc gaggcctggc ggtatgaaca
     5461 ggcaagggcg gaaaactgcg ccctgcatgc cgtcctctcc gacgaaagcc ttgccgatat
     5521 gcttgccgat acgcccgaaa ccgaaaccga cctcgaaggc gtacacggct tgggcagcgt
     5581 acgcgccgcc aaatacggac gggacatcct cgccgtctgc cgtccgtttt cagacggcat
     5641 cgatgaaacc gccaaacaca aacgccgcct gatgcgcgcc ctgatccaat ggtgcaacga
     5701 aacggcaaaa cacgaacagt ccgaacccta ccgcattctc agcaaagccg ccctacgcgc
     5761 cattgccgcc aaacagccgg aaggtttggc ggagcttgcc gccgtatatg gcgtaggcga
     5821 agaaaaagcc gcacgttacg gtgcggcggt gttggcggta ttggaacgaa atgccgtctg
     5881 aaaaccgtta ccaagtttca gacggcattg cctctattta aaaattcctg ttt
//
LOCUS       DAXIFS010000115         5850 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.115, whole genome shotgun sequence.
ACCESSION   DAXIFS010000115 DAXIFS010000000
VERSION     DAXIFS010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5850
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.115"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..333
                     /locus_tag="ACFOCA_001452"
     CDS             <1..333
                     /locus_tag="ACFOCA_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988159.1"
                     /translation="IIGIAFGFILRNRVLSIVKNKQKFLSDMFPLEMPFFSRVYKIPI
                     LARFLNRGMKWLYLQNFFCLVMICFSISLILNEERGWMPYFICYWFGLCYPANTYYVF
                     LSRDYKHI"
     gene            469..735
                     /locus_tag="ACFOCA_001453"
                     /pseudo
     CDS             469..735
                     /locus_tag="ACFOCA_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
     gene            complement(757..1434)
                     /locus_tag="ACFOCA_001454"
     CDS             complement(757..1434)
                     /locus_tag="ACFOCA_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISNme3 family transposase"
                     /protein_id="HFC6988160.1"
                     /translation="MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRG
                     INPIFLKIRHRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGILKR
                     NGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSN
                     EFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKETEFRFNHRHEDLGKILMK
                     MLRNNPI"
     gene            1482..2054
                     /locus_tag="ACFOCA_001455"
     CDS             1482..2054
                     /locus_tag="ACFOCA_001455"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6988161.1"
                     /translation="MLLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAG
                     YDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVNPT
                     EGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRL
                     PTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            complement(2425..3465)
                     /gene="queA"
                     /locus_tag="ACFOCA_001456"
     CDS             complement(2425..3465)
                     /gene="queA"
                     /locus_tag="ACFOCA_001456"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFC6988162.1"
                     /translation="MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGD
                     LPDYVEAGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKP
                     GMGLVFEGGIRAVTVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDS
                     RYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVDKIE
                     EHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTD
                     IFITPGYRFNVVDRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGD
                     AMVLGWNEGVVR"
     gene            3582..3839
                     /locus_tag="ACFOCA_001457"
     CDS             3582..3839
                     /locus_tag="ACFOCA_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HFC6988163.1"
                     /translation="MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTV
                     SEHHSARFAPLPQAGCFLKNQRNNPPKHRQPLKEQKWICAN"
     gene            3821..4276
                     /gene="accB"
                     /locus_tag="ACFOCA_001458"
     CDS             3821..4276
                     /gene="accB"
                     /locus_tag="ACFOCA_001458"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFC6988164.1"
                     /translation="MDLRKLKKLIDLVEESGIAEIEVTEGEEKVRITRTIAAAPVYAA
                     PVPAAAPAVTPAAAPVAASAPAAAPAARDLSDAQKSPMVGTFYRAPGPNAAPFVEVGQ
                     QVKVGDTLCIIEAMKLMNEIEAEKSGTVKEILVENGTPVEFGEPLFIIG"
     gene            4388..5749
                     /gene="accC"
                     /locus_tag="ACFOCA_001459"
     CDS             4388..5749
                     /gene="accC"
                     /locus_tag="ACFOCA_001459"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFC6988165.1"
                     /translation="MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKL
                     ADESVCIGPAASAQSYLNVPAIIAAAEVSCADAVHPGYGFLAENADFAEQVEQSGFTF
                     IGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDDGEEILKIADKVGYPVIIKA
                     SGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADE
                     HGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIGYRGAGTFE
                     FLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRIASGLPLQYKQKDIKIEGHA
                     FECRINAEDPYNFIPSPGPIESCHLPGGFGIRVDSHIYQGYRIPPYYDSLIGKICVHG
                     KTREQAMAKMRVALAELAVTGIKTNTPLHRDLFNDPGFQKGGVSIHYLEHWLEDRKAK
                     QDK"
BASE COUNT         1539 a         1560 c         1341 g         1410 t
ORIGIN      
        1 ataattggca ttgcatttgg atttatcttg agaaataggg ttctatctat agtaaaaaat
       61 aaacaaaagt ttttatctga tatgtttccc ttggaaatgc ctttcttttc tagagtatac
      121 aaaataccta tcttggccag attcttgaat aggggaatga aatggcttta tctccaaaat
      181 tttttctgtt tagttatgat ttgtttctcg atatctctta tccttaatga agaaaggggg
      241 tggatgcctt attttatctg ctattggttt ggactttgtt atccagcaaa cacttattac
      301 gtttttttat ccagagatta taaacatatc taaactatta tgcgtggcgg tacttccaaa
      361 ggtaaatttt aacctaatca atttactcaa accatccaaa aattaccaag cagcaatata
      421 aacacagatt tatttgagcc aacctgatca aaacaaggaa ctaaatagat gaaaaagacc
      481 atttttaaca ttaccaaaat ggactgcccg tccgaagaac agctcattcg catgcgttta
      541 aaagatgtgt ctgatattta tgaattacag tttgatattg ctgggcggtg cttaaccgtc
      601 tatcacgata atcaagatac aacgatttta caagtacttg aaccgcttaa ttttgatagt
      661 catatcattt ccaccgaagt gattgttgat aagatagtgt ttaacaagcc tgatgagcac
      721 ttagaaaaaa gattaggggc ttaggaagca aaaatattaa attgggttat ttcgaagcat
      781 cttcattaat attttaccta aatcttcatg ccggtggtta aacctaaact ccgtttcttt
      841 gagatgcaga taaaacatct ctttggaaat accatgaaat ttagccaaac gccccttagt
      901 ataactccaa aaagattcaa taccattgat atgttgcttt cctcgagcaa actcattgga
      961 accatgatgg acacggtaat gcttctcata gcccatatcg acaagaccgt catatgcttt
     1021 ccagccgtca gtattgattt cactgtcagc agatatgtga ccacgtatga ccttgattag
     1081 tgaggctttc gaagcgtcgg gaacgatttc cgtatagacc acgccattgc gtttcagtat
     1141 gccaaatacg atggttttac ctgacgctcc gcgaccgcgc ttacccctga tacgtcgcgc
     1201 accaaagtaa gattcatcta attcgaccac accggacagt ggtgagcttt gttcgcacag
     1261 agcagcaatc ctgtgtctga ttttcaggaa aataggattg ataccgcgta cactaatgcc
     1321 ggtcatttta gcagtatcgg aagcggtcaa atcaagagcg aaacagcgga ttatttctct
     1381 aaacttttgc tctgaaattt tgctgaactt ttgatactta ttttttagtt tcatattagg
     1441 agcttatcag gttttttgat gattttgctt cctaagcccc tattttatta ttagacggcg
     1501 gcaaggcgtt cggacattct cacggcgggt taaaccgcac gcttcacaaa aaagcgaaag
     1561 aagttttgac cgcgctcgga cacaatgttc aagaaaccgt gattgatgcc ggctatgatg
     1621 ttgaggcaga aatcgaaaaa ttcgtttgga tggatgccgt gatttggcag atgccgggct
     1681 ggtggatgca cgagccttgg acagtgaaaa aatacataga cgaagtatta accgctggac
     1741 acggcaaact ctaccaaagc gacggcagac accgcgtcaa tccgactgag ggctacggca
     1801 caggcggctt gttgcaaggc aaaaaacata tgctttcact gacttggaat gcgccgattg
     1861 aggcgtttac ccgcgaaggc gatttctttg aaggcaaagg cgttgatgtt ttgtatatgc
     1921 acttccacaa agccaacgag tttttgggta tgacccgcct gccgacattc ttatgtaacg
     1981 atgtggttaa aaatccgcaa gtggaaaaat acttggcaga ttatcaggca cacttggaaa
     2041 aagtgttcgg ctaaaaattt atcttataaa caaacaaagg cagcctgaaa gattgaatgg
     2101 tctgcacccc taaggttgga ctaaccaacc gactaaggtg cagattattt tttgttgctt
     2161 tttcagcttt tcgttgggtt agatattctt gcccactgtt ttcaggcagc cttgaataca
     2221 aaaaatggcg tatgtaatat gtttatacga ccaaaacgga atgaatttta acgtattgcg
     2281 cgtcatcaac aatgactgag tttctcgcct ctcgcgcctg aatctatgtc atatacagtt
     2341 cctttcattc aaatcaacaa aagaatgccg tccgaacgtc cgttcagacg gcacttgtct
     2401 tcccgcaata gacttggggc tgttctaacg taccacccct tcgttccacc ccaaaaccat
     2461 cgcatcgccg tagctgaaga aacggtattc gcgttcgacc gcataacgat acgcggcgcg
     2521 gatatgaccc atacccgaaa acgcgctgac aagcatcagc agcgtcgatt tcggcaaatg
     2581 aaaattggta accagcctgt cgacaacatt aaaacggtag cccggcgtga tgaaaatatc
     2641 ggtgtcgccc tgccccgctt tcagacgacc cgtcgcacgc gcggcagatt cgagggcgcg
     2701 catggaagtc gtgccgactg cccagacttt gttcccccgg gcttttgccg cctcaacggc
     2761 ggcggcggtt tcagacggca cttcaaacca ttcgctgtgc attttatgct cttcgatttt
     2821 gtccacacgc acgggttgga atgtccccgc accgacgtgt agggttactt ctgcggttac
     2881 tgcgcctttg tctttcaggc ggcgcaaaag ttcttccgta aaatgcagac ccgccgtcgg
     2941 cgcggcgacc gcgccctgat atttggcata aacggtttga taacggctgt cgtcatccgc
     3001 atcggcggcg cgttcgatat aaggcggcag gggcaggtgt ccgttctgtt ccaaaagttc
     3061 gtaaacggtt tgaccgcctt caaaacgcag gcagaacagt tcgccctcac gcccgaccgt
     3121 cacggcgcgg atgccgcctt caaacaccag ccccataccg ggcttgggcg atttggacga
     3181 acggatgtgc gccagtgcgg tatggttgtc caacacgcgc tcaatcaggg cttcgatcct
     3241 gccgccgctg tctttctgcc caaacagccg cgccttcatg actttggtgt tgttgaacac
     3301 caaaacgtcg cccgcctcaa cataatccgg caaatcgccg aacacccggt cttgcagcgg
     3361 catatcgggc aacgcaacca aaaggcggct gctgccgcgc acttcgggcg gatgctgggc
     3421 aatcagcttt tcgggcaggg taaaatcaaa atctgaaata tccattttta cactctcgtt
     3481 cgggcaagcc gccattatac gcactttagc cctttttcag acggcatctt tgtccgaaaa
     3541 accaacagat tagaataaac actcttaacc cggggcatct tgtgcgcaaa atcaaacttc
     3601 ctgcacattt cccccaaaaa ccgccgtttt ttgatatttt actggacatt taccgacaac
     3661 ttcgggaaaa taaacacatt ctcacggtcg ttttccacca caggaaaacc gtatccgaac
     3721 accattccgc ccggtttgcg ccgttgccgc aagccggctg ttttctgaaa aaccaacgca
     3781 acaacccgcc gaaacaccgg cagcctttaa aggaacagaa atggatttgc gcaaattaaa
     3841 aaaactgatt gatttggttg aagaatcggg tatcgccgaa atcgaagtaa ccgaaggcga
     3901 ggaaaaagtc cgcatcaccc gaaccatcgc cgccgcaccc gtttacgccg cgcccgtacc
     3961 tgccgccgcg ccggccgtaa cgcctgccgc cgcacccgtt gcggcatccg cgcctgccgc
     4021 cgcacctgcc gcccgcgatt tgtccgacgc gcaaaaatca cctatggtcg gcacgttcta
     4081 ccgcgcaccc ggcccgaatg ccgcgccttt tgtcgaagtc ggccaacagg ttaaagtcgg
     4141 cgacacgctg tgcatcatcg aagcgatgaa gctgatgaac gaaatcgaag ccgaaaaatc
     4201 cggcacggtc aaagaaattt tggtcgaaaa cggtacgccc gtcgaattcg gcgaaccgct
     4261 cttcatcatc ggataatcct gttttcagac ggcataaact tccgatgccg tctgaaatgc
     4321 tttccccctt cagcgttccc gcaccctttt ttacggacgg gttgccggaa ccgcaggaaa
     4381 ggtcatcatg ctgaaaaaag ttttaatcgc caaccgaggc gaaatcgcat tacgcgtact
     4441 ccgtgcctgc cgcgaaatgg gcattgccac cgtcgccgtg cattccgagg ccgacaaaga
     4501 cagcctgcac gtcaaactcg ccgacgaatc cgtgtgcatc ggccctgccg cttccgcgca
     4561 aagctacctc aacgtccccg ccattatcgc cgccgccgaa gtaagctgcg cggacgctgt
     4621 ccacccgggc tacggtttcc ttgccgaaaa cgccgatttc gccgaacagg tcgagcagtc
     4681 cggctttacc tttatcggcc cgaaacccga caccatccgc ctgatgggcg acaaagtatc
     4741 cgccaaacac gccatgatcg aagcgggcgt gccttgtgtt cccggctctg acggcgcatt
     4801 gcccgacgac ggcgaagaaa tcctcaaaat cgccgataaa gtcggttatc ctgtcattat
     4861 caaagcctct ggcggcggcg gcggtcgcgg tatgcgcgtg gtcgagaaaa aagaagacct
     4921 cctccaatct gtcgaaatga ccaaggcaga agcaggcgcg gcattcggca acccgatggt
     4981 ttacatggaa cgctatttgc aacgtccgcg ccacgtcgaa atccaagtga ttgccgacga
     5041 acacggcaac gccgtctacc ttgccgaacg cgactgttcg ctacaacgcc gccaccaaaa
     5101 agtcatcgag gaagcaccgg ctccgttcat cactgaaaaa gaacgcgcca aaatcggcaa
     5161 cgcctgtgcc gacgcctgca aacgcatcgg ctatcgtggc gcaggtacgt ttgaattcct
     5221 gtacgaagac ggcgaatttt tctttatcga gatgaatacg cgcgttcagg ttgagcatcc
     5281 ggttaccgag ctcatcaccg gcgtggacat tgtgcaggag caactccgca tcgcatccgg
     5341 cctgccgctg caatacaagc agaaagacat caaaatcgaa ggccacgcgt ttgagtgccg
     5401 tatcaacgcc gaagacccat acaacttcat ccccagcccg ggcccgattg aaagctgcca
     5461 cctgcccggc ggcttcggta tccgcgtcga cagccacatt taccaaggct accgcatccc
     5521 gccttactac gacagcctga tcggcaaaat ctgcgtacac ggcaaaacgc gtgaacaggc
     5581 aatggcgaaa atgcgcgtcg cactcgccga gctggcggta accggcatca aaaccaatac
     5641 gccgcttcac cgcgacttgt tcaacgaccc aggtttccaa aaaggcggcg tcagcatcca
     5701 ctatttggaa cactggctgg aagatcgcaa agccaaacag gacaaataag ccgccgccga
     5761 tatgccgtct gaaacagttt gtccgttttc agacggcatt tcccttgccc cgcgccgtct
     5821 gaaaccgatt tcgatatagt ggattaactt
//
LOCUS       DAXIFS010000116         5828 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.116, whole genome shotgun sequence.
ACCESSION   DAXIFS010000116 DAXIFS010000000
VERSION     DAXIFS010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5828
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.116"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(18..239)
                     /locus_tag="ACFOCA_001460"
                     /pseudo
     CDS             complement(18..239)
                     /locus_tag="ACFOCA_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="taurine catabolism dioxygenase TauD"
     gene            complement(238..345)
                     /locus_tag="ACFOCA_001461"
                     /pseudo
     CDS             complement(238..345)
                     /locus_tag="ACFOCA_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(391..1119)
                     /gene="pdxJ"
                     /locus_tag="ACFOCA_001462"
     CDS             complement(391..1119)
                     /gene="pdxJ"
                     /locus_tag="ACFOCA_001462"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFC6988166.1"
                     /translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
                     EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
                     GLDVLAQQEKIAGFTKILTDAGIRVSLFIDADDRQIQAAYDVGAPVVELHTGAYADAR
                     SHAEQLKQFERLQNGAHFAGDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLIAQ
                     ALFLGLPEAVRQMKEAMFRARLLP"
     gene            complement(1143..1934)
                     /gene="recO"
                     /locus_tag="ACFOCA_001463"
     CDS             complement(1143..1934)
                     /gene="recO"
                     /locus_tag="ACFOCA_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HFC6988167.1"
                     /translation="MSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSAR
                     KRQSELRGVLVPFVPVSASWYGSQELKTLHRAEWIGGWPQPQGRALFSGLYVNELMLK
                     LTVREDPLPELYDALAEVMEAVCCKAAYIDDLRRFEWRLLNLLGVAPDLHADGTGGDI
                     LADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKIT
                     RLFIRHLLPEGLKSRQVLEQIRQFDRKETAQETVPTSDGTASNAV"
     gene            complement(1968..3095)
                     /gene="pheA"
                     /locus_tag="ACFOCA_001464"
     CDS             complement(1968..3095)
                     /gene="pheA"
                     /locus_tag="ACFOCA_001464"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFC6988168.1"
                     /translation="MLECTINYCSGEIMSQTIDELLLPHRNAIDTIDAEILRLLNERA
                     QHAHAIGELKGTGAVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERP
                     LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDNCFKQVETRQADYLVAPVENSTEG
                     SVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGR
                     HLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTR
                     FLVMGHHETGASGSDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWE
                     YLFFIDIEGHRRDAQIQTALERLGERASFVKVIGSYPTAVL"
     gene            complement(3134..4366)
                     /locus_tag="ACFOCA_001465"
     CDS             complement(3134..4366)
                     /locus_tag="ACFOCA_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFC6988169.1"
                     /translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLN
                     ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLAVYCLAVAAIVFASSAE
                     QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
                     QGLGGWQAIFVFLAAYSLVLLGLVQYFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
                     MGYLFFQAFSFGSMFAFLTESSFVYQQLYHVTPHQYAWAFALNIITMMFFNRITAWRL
                     KTGAHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
                     ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHDGSATVMAATMTASTSCGIAL
                     LWLCSHRAWKENEQSEYL"
     gene            complement(4886..5740)
                     /locus_tag="ACFOCA_001466"
     CDS             complement(4886..5740)
                     /locus_tag="ACFOCA_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6988170.1"
                     /translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
                     ACRRHVGKIPREEWKPLLIVSFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
                     GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
                     PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWSVGMVLSLLYLGVGCGW
                     YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
                     AGRLSHQK"
BASE COUNT         1364 a         1691 c         1579 g         1194 t
ORIGIN      
        1 acataatcat cgcctcaata tttaatatcc caaaatatag atttaaaacc atcgcctttg
       61 tggtttgtca gcattcctaa ttgagataga aagtcaaata atttcttgtt tctccggctg
      121 ccatcaagat ggtttagatt aagacctcga acaatacaat acccaatact ctgtactgta
      181 ttgtgaattt cttctatcaa actattattg tttgcagata aaatatactt ttgattcata
      241 tagtgaatta aatttaaacc agtacggcgt tggcttgcct tgccgtacta tttgtactgt
      301 ctgcggcttc gccgccttgt cctgatttaa atttaatcca ctataacata tccctgtcgt
      361 gaaatgctgt ctgaaagggt ttgcctgccc ttacggcagc agccttgccc tgaacatcgc
      421 ctccttcatt tggcgcacgg cttcgggcag tccgaggaag agggcttggg caatcagcga
      481 atgcccgatg ttcagttcgc ggatggcgag gatttgggcg atgggggtaa cgttgtgtat
      541 ggtcagtccg tgtccggcgt tgacgaccaa gcccaaatcg ccggcaaaat gcgcgccgtt
      601 ttgcagacgc tcgaattgct tgagttgttc ggcgtggctg cgcgcgtcgg catacgcgcc
      661 tgtgtgcagc tcgacaacgg gcgcgccgac atcataggcg gcttggattt gcctgtcgtc
      721 ggcatcgata aagagagaga ctcggatgcc tgcgtcggtc aggattttgg tgaacccggc
      781 gattttttcc tgttgcgcca atacgtccaa gccgccttcg gtcgtgattt cctgacgttt
      841 ttcaggcacg atgcacacgt cttccggcat cactttaagc gcgttttcga gcatttcttc
      901 cgtcaacgcc atttcaaggt tcaggcgcgt gcggatggcg tttttgacgg caaacacatc
      961 cgcgtctttg atgtggcggc ggtcttcgcg caggtgcatg gtaatcaaat ccgcaccgtg
     1021 cgtttcggca accagtgccg cctccacggg gctgggataa gtcgtgccgc gcgcattgcg
     1081 gacggtagcg atgtggtcga tgttgacacc taaaagcata atctttcctt ttatttctgc
     1141 cttcagacgg catttgaagc cgtgccgtcc gaagtcggga cggtttcctg ggcggtttct
     1201 ttgcggtcaa actgccgtat ctgttccaac acctgccgcg atttcagccc ctcgggcaac
     1261 aggtggcgga taaaaagccg tgtgattttc aatgcctgtt gcaggctttc ggcggtgcgg
     1321 aaactgcctt cgcgcaaatc gatcaggctt tgcccttcga caattgcgcc ggcttcgtgc
     1381 gaaagcgcgt ctgcgtcctc gcatacgggc atgaccgcct cttcgggcat cagccggtag
     1441 gttttgtccg ccaaaatatc gccgcccgtg ccgtcggcgt gcaaatcggg ggcaacgccc
     1501 aacaggttca gcagccgcca ctcgaaacgg cgcaagtcgt cgatataagc ggctttgcag
     1561 cacaccgcct ccatcacttc cgccaacgcg tcgtataact cgggcaacgg atcttcgcgg
     1621 acggtcaact tcagcatcaa ctcgttcaca tacaatccgc tgaacaaagc cctaccctgc
     1681 ggctgcggcc acccgcctat ccattcggcg cgatgtaggg tcttcaactc ttgcgaacca
     1741 taccaagacg cactcaccgg cacaaacggc accaacacgc cgcgcaattc gctctgccgt
     1801 ttgcgcgcgc ttcttgccaa aagtgccaca cgcccgtaac ggcggctgaa cgcttcgacc
     1861 cgcaggctgc tttcgcgcca gggcgaggaa gccaacagga agacgggttc gtggttgact
     1921 cggtgttcgg acatcatgcc tgaaatgccg tctgaacgct gccgccgcta caaaacggcg
     1981 gtcgggtacg aaccgatgac tttgacgaac gaagcgcgtt cgcccaagcg ttccaatgcc
     2041 gtctgaatct gcgcgtcccg gcggtgtcct tcgatgtcga tgaagaacag gtattcccac
     2101 aaaacggatt tactcggacg gctctcaaac ttggtcatgg aaatacccga ctcagtcagc
     2161 ggttgcagca gcgaggcaac cgcgcctgcc cggttgggcg cggaaacggc cagcgaagtc
     2221 ttgtcgctgc cgcttgcacc ggtttcgtga tgtcccatca ccaagaagcg cgtggtgttg
     2281 ttcggttcgt cttcgatgca ctcggcaacc atatcgagtc cgtagatttc cgccgccgtg
     2341 cgtccggcga tggcggcaac cgtaccgtcg tccgattcgg caaccagcct tgcggcttcg
     2401 gcattgctgg acacggcaat ccgttcggcg ttgggcaggt gtctgcccaa ccagtcgttg
     2461 cactgcgcca acgcctgcgc gtgggaaaag actttggcaa tgccttcggt gctgccgttg
     2521 tttttacgca aaaggttgtg gtggatgcgc aaaacgactt cgccgcacgc ctgcaacgcg
     2581 gtaacggcaa gcaaatccaa cgtgcgcccg accgagcctt cggtcgagtt ttccacgggc
     2641 gcgaccagat aatccgcctg acgggtttca acctgcttga agcagttgtc tatggtcgga
     2701 cacgccatgg tgtgcgcggc gtgtccgaaa tgcttgatcg ccgcctgctg ggtaaacgtg
     2761 ccctgcggcc ccagataggc gatggtcagc gggcgttcga cggcgaggca ctcgctcatc
     2821 acttcccgaa acaggcgtgc taccgattcg tcgggcagcg ggcctttgtt caaatcctga
     2881 atgcggcgca acacggcgac ttcgcgttcg gggcggtaca ctgcgcccgt gcctttcagc
     2941 tcgccgatgg cgtgggcgtg ttgcgcacgt tcgttgagca ggcgcaggat ttcggcatcg
     3001 atggtgtcga tggcgttgcg gtggggaagg aggagttcgt cgatagtttg ggacataatt
     3061 tcgcctgaac agtaatttat cgtgcattct aacatcaaat gccgtctgaa acggtttcag
     3121 acggcatttt ccgttaaagg tattcgctct gttcgttttc cttccacgcc cggtgcgaac
     3181 acagccacag aagcgcaatg ccgcaagagg tggacgcggt catcgttgcc gccatcacgg
     3241 ttgccgaacc gtcgtgcaag aaggtcgccg ccatacccac ccccgcgccg attaaggact
     3301 ggaacacgcc caacacggcg ttcgcgctgc cgccctcttc tttgaaataa gacataaagc
     3361 atgcctgcgt gttcgcgccg accaagccct gcgtaccgac ggaaaacatc acgcacgcaa
     3421 ccagcagcca aaacgggggc aacccgaaaa acagcacggc ggcgagttgg gacaggttgg
     3481 cggcaaattg gacgacaatc ccccacagca ggatgctttg cggatgcgcg ccggttttga
     3541 gccgccacgc ggtaatacgg ttgaaaaaca tcatcgtgat gatgttgagc gcaaacgccc
     3601 aagcgtactg gtgcggcgta acgtggtaga gctgctggta cacgaaggaa gattcggtca
     3661 gaaaggcgaa catcgaaccg aagctgaatg cctgaaaaaa cagataaccc atcgcggcac
     3721 gggttttcaa tacgcgcttg aaccgccccg ccaccagccc gaacacgtcc ctgccgattt
     3781 tgccgccgac ggcgggcttg ggcaggaaat actgtaccaa accgagcagc accagcgaat
     3841 acgccgccag aaaaacaaaa atcgcctgcc agccacccaa gccctgcaac aatgcgccga
     3901 ccatgggtgc gaccagcggc acaaccatca aaatgatgcc gataagggca aacatctggg
     3961 cggctttgcg tccggaataa taatcgcgca ccattgcgcc gacgatgacc acagtcatgc
     4021 ccgcaccgaa tgcctgcacg acgcgcaggt tgaggagctg ttcggcactc gaagcaaata
     4081 cgatggcggc aacggcaagg cagtagacgg ccagtccggt cagcgcgacg ggtttgcgcc
     4141 ctttgatgtc ggacaccgaa ccgccgacca cctgtccgaa cgccgtgccg aacataaaca
     4201 aactcaggct ctgttcgatg cggtggacat ccgcgttcag cgactgcgcc atttcgggaa
     4261 tcgcgggcag gtaggcatcg atggaaaacg gcatcagcgt aaccagcatc gccatcaaaa
     4321 ccgccatcag tttttcgctc atttcaggat aatgggcaga aggcataaat tctcgtccga
     4381 ttcgcaaaca aaccgcccgg cggcggaaaa cacaatacgc ggaaacggaa aattttaaca
     4441 caccggcaca aacaggcggc aacaaaagcc ccggcaaaac cggacgaacc ggaacgatat
     4501 agtggattaa caaaaaccag tacagcgttg ccttgcctta gctcaaagag aacgattctc
     4561 taaggtgctt aagcacccag tgaatcggtt ccgtactatc tgtactgtct gcggcttcgt
     4621 cgtcttgtcc tgatttttgt taatccgcta taaaatcccg tcattcccgc gcaggcggga
     4681 atccggacat ccaacgctgc agcaatttgt cggaaataac cgaaactcaa aaaaccggat
     4741 gcccgcctgc gcgggaatga cgatgcaaag atggtcgtta tttcggataa atatccgtct
     4801 tttcgttccg gatacccgct ttcgcaggaa tggagatgga aagatttcag cctattcggc
     4861 aatcatcaaa taccgcttcc caactttatt tttgatgcga cagccggccg gcaaccaagg
     4921 tggcggcgat gacgacaaac acgcccaagg cggacacggg cgacaggtgt tcgcccaaaa
     4981 tcaaaaccgc cagcagcacg ccgacgacgg gttcgagcga aatcaacagt cccgacacgt
     5041 tggcaggaac acggctcatc cccttgttcc acagccaata ggcgtaccag ccgcacccca
     5101 cgcccaaata cagcagcgac aataccattc cgacgctcca gtccacggta taactttgcg
     5161 ccaaagcaag cgaaaacggc aggcacatca acgatgcggc ggcaatggaa acagatgtga
     5221 atgccggtgc gccgatgcgt gcaatcagcc tttgcgtcgg acgcatagcg gcacaaaagc
     5281 ccgcgcccgc caacaacacc agcaggcagc cgaaccagcc gacttcgccg ccctcttccg
     5341 caccgcccgc catcagcagc gcgacaccgg caaatgccgc cgcgccgcat atccagtggt
     5401 aggcacgcgc tttgtcgttg aagaaaaagt gtccgacaaa caccatcagc agcggctcga
     5461 gtccgacaat gaccgatgcg ctggcggcgg aagtgtattt caacccgaca aactgaagca
     5521 gcagggtcag cacatagttg acgaacgaca caatcagcaa cggcttccat tcctcacgcg
     5581 gaatcttgcc gacatgacgg cggcaggcgg gcagtgcagg cagcgcagca atcagcaggc
     5641 gcacgccgac catcaatgcg ggatcgatgc cgccatagac atatttggcg gcaataaacg
     5701 agctgctcca gataatcagg gcaaggattt ggtaaaacat agtgagtgat aaagtcagat
     5761 ggtcatacaa aagtatagcg gattaacaaa aatcaggaca aggcgacgaa gccgcagaca
     5821 gtacaaat
//
LOCUS       DAXIFS010000117         5794 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.117, whole genome shotgun sequence.
ACCESSION   DAXIFS010000117 DAXIFS010000000
VERSION     DAXIFS010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.117"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(286..1275)
                     /gene="pdxA"
                     /locus_tag="ACFOCA_001467"
     CDS             complement(286..1275)
                     /gene="pdxA"
                     /locus_tag="ACFOCA_001467"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HFC6988171.1"
                     /translation="MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKHLLRA
                     RAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTAL
                     AGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRV
                     ALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFCIKNPKILVAGLNPHAGEGGHL
                     GHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYH
                     SFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL"
     gene            1435..2862
                     /locus_tag="ACFOCA_001468"
     CDS             1435..2862
                     /locus_tag="ACFOCA_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6988172.1"
                     /translation="MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQF
                     RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
                     WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
                     IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVV
                     PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
                     GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
                     DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
                     VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
                     KMGKDPEFKLSEHPGLKRRIKSDVW"
     gene            3137..5032
                     /gene="mnmG"
                     /locus_tag="ACFOCA_001469"
     CDS             3137..5032
                     /gene="mnmG"
                     /locus_tag="ACFOCA_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFC6988173.1"
                     /translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIET
                     LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
                     DRILYKATIREMLENQENLDLFQQAVEDVTLDGERISGVVTAMGVEFKARAVVLTAGT
                     FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQL
                     TEQPGDTPVPVMSVRGSADMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVG
                     PRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGL
                     ENAHILRPGYAIEYDYFDPRNLKASLETKTIQGLFFAGQINGTTGYEEAAAQGLLAGA
                     NAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
                     LTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSR
                     EANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSR
                     RDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLK
                     RGFKDAK"
     gene            5100..5684
                     /gene="rnhB"
                     /locus_tag="ACFOCA_001470"
     CDS             5100..5684
                     /gene="rnhB"
                     /locus_tag="ACFOCA_001470"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFC6988174.1"
                     /translation="MHILTAGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSE
                     KKRDALAEMIKNQAVAWHVAAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDG
                     NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
                     TKQHLEALEKYGVLPEHRRDFAPVRNLFAQQALF"
BASE COUNT         1352 a         1716 c         1553 g         1173 t
ORIGIN      
        1 ctggattccc gcctgcgcgg gaatgacggt ttagaagttg cccgaaacct caaaaaaaac
       61 cgaaaccgaa caagccggat tcccgcaacc tttcgtcatt cccgtgaaaa cgggaatcta
      121 gaacctcaaa ctttcagata atctttgaat attgccgtcg cccgaaggtc tggattcccg
      181 cctgcgcggg aatgacgatt tggaaattac ccgaaaccca aaaacaactg aaaccgaaca
      241 gaccggattc ccgcctgcgc ggaaatgacg ggtcttttat catctttaaa ggctgccgcg
      301 cgccatctcg acggcggtct ccacggcagt tatcaggctg ccggaatccg ccctgccggt
      361 tgccgccaaa tcgagcgcgg tgccgtgatc gacggaggtg cggataaagg gcagccccag
      421 tgtgatgttc acgccctgcc cgaaactgtg gtatttcaac acgggcagcc cttggtcgtg
      481 gtacatcgcc aatacggcat ccgcaccttc gagcataaac ggttggaaca aggtatccgc
      541 cggatacggg ccggcgaggt ttatcccttc gcggcgcagg ttttcgagcg cggggataat
      601 ggtgtcggtt tcttcgtgtc cgaggtgtcc gccctcaccg gcgtgggggt tgagtccggc
      661 gactaggatt ttgggatttt tgatgcagaa tttgtgtttt aagtcgtgat gcaaaatgcg
      721 tgcgacgctt tcaatcagcg gttgcgtgat ggcggcggca acgtctttca gcggcaggtg
      781 ggtcgttacg agggcgacgc gcaggccttt gccggcaagc atcatcacga cctgccccgt
      841 gccgcttttt tccgccagat attcggtgtg tccgctgaaa aaacctgtgc ttgcgcgcgc
      901 gtcgttgatg atgcctttgt gcagcggcgc ggtaacgatg ccgtcgaaaa tgccgtctga
      961 aatgcctgcg agcgcggtgt ccaaaagttg cagcacatag gcggcgttgg cgggattgag
     1021 tttgcccgcc tcaaccgctt cgacggcagg gatgtgcagc acttccagct cgccgtatgc
     1081 cgcgccgcct gattctggat cgaagtcgcg caggacgacg cttttgccca aggcttcggc
     1141 gcgcgcgcgc aacaggtgtt tgtcgcccaa taccgcgcag cggcagggca ggcgtgcaaa
     1201 cgccaagtcc aaacaaatat cggggccgat gccggcaggc tcgccggaag taacggcaaa
     1261 aacaggctgt ttcatcgtgt ttgctccaaa caaaatgcga ttctaacgcc gcagccgcgc
     1321 ggcgatgtaa atttttctga ttttgttgac aatctgctag aatgggcgtt tacaaaattt
     1381 aaaccctgct tgcataccgc caatatgtgc gagtttcaac tttaaggaag cgatatgaac
     1441 gagaacttta ccgaatggct gcacggctgg gtcggcgcca tcaacgatcc gatgtggtca
     1501 tacttggttt atatgctttt gggtacgggg cttttcttca ccgtaaccac gggctttgtc
     1561 caattccgcc tgttcgggcg cagcatcaaa gaaatgctcg gcggccgcaa acagggggac
     1621 gaccctcacg gcatcacgcc gtttcaggca tttgtaaccg gccttgccag ccgcgtgggc
     1681 gtgggcaata tcgcgggcgt ggcaatcgcc atcaaagtcg gcgggccggg cgcggtgttt
     1741 tggatgtggg taaccgcctt aatcggtatg agttcggcgt ttgtcgaatc ttcgctggcg
     1801 cagctcttta aagtccgcga ctacgacaac caccatttcc ggggcggccc tgcctactac
     1861 atcactcaag ggctggggca gaaatggctg ggcgtgttgt tcgccctgag cctgattttc
     1921 tgtttcggct ttgtgtttga agcggttcag accaatacca ttgccgatac cgtcaaagcg
     1981 gcgtggggtt gggagcctca ttatgtcggc gtcgccctgg tgattttaac cgcgccgatt
     2041 atcttcggcg gcatcaggcg catatctaaa gcggcggaaa tcgtcgtccc cctgatggcg
     2101 gttttgtacc tctttatcgc gcttttcatc attttgacca atattccgat gattccggac
     2161 gtgttcggtc agattttttc gggcgcgttc aaattcgacg cggcagcagg cggcttactc
     2221 ggcggtctga tttcgcaaac gatgatgatg ggcatcaaac gcggcctgta ttccaacgag
     2281 gcgggtatgg gttccgcgcc gaacgccgcc gccgccgccg aagtgaaaca ccctgtttcg
     2341 caaggtatga ttcaaatgct gggcgtgttt gtcgatacca tcatcgtttg ttcttgcacc
     2401 gccttcatca tcttgattta ccaacagcct tacggcgatt tgagcggtgc ggcgctgacg
     2461 caggcggcga ttgtcagcca agtggggcaa tggggcgcgg gcttcctcgc cgtcatcctg
     2521 tttatgtttg ccttttccac cgttatcggc aactatgcct atgccgagtc caacgtccaa
     2581 ttcatcaaaa gccattggct gattaccgcc gttttccgta tgctggtttt ggcgtgggtc
     2641 tatttcggcg cggttgccaa tgtgcctttg gtctgggata tggcggatat ggcgatgggc
     2701 attatggcgt ggatcaacct tgtcgccatc ctgctgctct cgcccttggc gtttatgctg
     2761 ctgcgcgatt acaccgccaa gctgaaaatg ggcaaagacc ccgagttcaa actttccgaa
     2821 catccgggcc tgaaacgccg tatcaaatcc gacgtttggt aaatcccgcc cttaccggag
     2881 ccgcttcccc gcgaagcggc ttttcccttt ccgcacactg taaaaacagg gcgaacaagc
     2941 gtacaatccc aaccctttac ttttgaatcc atttcgtttt tcagacggca tattgaatat
     3001 agtggttcaa caaaaatcag gacaaggcga cgaagccgca gacagtacaa gcagtacgac
     3061 aaggcgaggc aacgctgtac tggtttttgt taatccacta taaatgccgt ctgaaacacc
     3121 gtcaggcaat acacacatga cccacatgat ttaccccaaa acctacgacg ttatcgtcgt
     3181 cggcggcgga cacgcaggca cggaagccgc gctcgccgcc gcccgtatgg gcgcgcagac
     3241 gcttttgctc acacacaata tcgaaacgct cggacaaatg tcgtgcaacc cctctatcgg
     3301 cggcatcggc aaagggcatt tggtacgcga actcgacgcg ctcggcggcg cgatggcgtt
     3361 ggccaccgac aaatcaggca tccagttccg ccgcctaaac gccagcaaag gcgcggcagt
     3421 gcgagccacg cgcgcgcagg ccgaccgtat cctgtacaaa gccaccatcc gcgaaatgtt
     3481 ggaaaaccaa gaaaacctcg accttttcca acaagccgtc gaagacgtaa cgctcgacgg
     3541 cgaacgcatc agcggcgtgg ttaccgcgat gggcgtggag tttaaagcac gcgccgtcgt
     3601 gctaactgct ggcacgtttt tgtccggcaa aatccacatc ggtttggaaa actacgaagg
     3661 cggccgcgct ggcgaccccg ccgccaaatc gctgggcggc cgtttgcgcg aattgaacct
     3721 gccgcaaggc cgtctgaaaa ccggcacgcc gccgcgtatt gacgggcgca cgattgactt
     3781 ctcccaactg accgaacagc ccggcgacac gcccgttccc gtaatgtccg tacgcggcag
     3841 cgccgatatg caccctcgcc aagtgtcctg ctggattacg cataccaaca cgcaaaccca
     3901 cgacatcatc cgttcaggct tcgaccgcag ccccatgttt actggcaaaa tcgaaggtgt
     3961 gggtccgcgt tattgtccgt ctatcgaaga caaaatcaac cgcttcgccg acaaagacag
     4021 ccaccagatt ttcctcgagc ccgaaggcct gaccacgcac gaatactatc caaacggtat
     4081 ctccactagc ctgccgttcg acatccaaat cgcgctcgtg cgcagcatga aaggccttga
     4141 aaacgcccat atcctgcgcc ctggctacgc catcgaatac gactacttcg acccgcgcaa
     4201 cctcaaagcc agcctcgaaa ccaaaaccat ccaaggcctc ttcttcgccg gacaaatcaa
     4261 cggcacaacg ggctacgaag aagccgccgc gcaaggactg ctggcaggcg cgaacgccgt
     4321 gcaatacgtc cgcgaacaag acccgctcct gctgcgccgc gaacaagcct atctcggcgt
     4381 attggtggac gacctcatca ccaaaggcgt gaacgaaccc taccgaatgt tcaccagccg
     4441 tgccgaatac cgcctgcaac tcagggaaga caacgccgat atgcgcctga ccgaagacgg
     4501 ctacaaaatc ggcttggtgg gtgaagcgca atggcgcatg ttcaacgaaa aacgcgaagc
     4561 catcgaacgc gaaatccaac gtttgaaaac aacgtggtac acgccgcaaa aactcgccga
     4621 agacgaacaa atccgcgtat tcgggcaaaa gctcagccgc gaagccaacc tgcacgacct
     4681 cctgcgccgc ccgaacctcg actacgccgc gctgatgacg ctcgaaggcg cgatgccgtc
     4741 tgaacgcctc tccgccgaag tggtcgaaca agtcgaaatc caagtcaaat accaaggcta
     4801 tatcgaccgc caaaacgaag aaatcgacag ccgccgcgac atcgaaacct taaaactgcc
     4861 cgacggcatc gattacggca aagtcaaagg cttgtcggca gaagtgcagc aaaagctcaa
     4921 ccagcacaaa cctgaaaccg tcgggcaggc aagccgcatt tccggcgtaa cgcctgcggc
     4981 agtggcattg ctgatggtgc atttgaagcg cgggtttaaa gacgcgaaat aaacacatcg
     5041 gcgcgatgcc gtctgaaaca ccgttcagac ggcatcgtgc catcccgaca ggaaacatca
     5101 tgcacatact gaccgccggc gtggacgagg cagggcgcgg gcctttagtc ggcagcgtgt
     5161 ttgccgccgc cgtcatcctt ccggaaatat tcgacctgcc cggactgacc gactccaaaa
     5221 aactcagcga gaaaaaacgc gacgcgcttg ccgaaatgat aaaaaatcag gcggttgcgt
     5281 ggcacgtcgc cgccgccggg cccgaagaaa tcgccagcct caacatcctg cacgccacca
     5341 tgctcgcgat gaaacgcgcc gttgacggtt tggctgtgcg tcccgaaaaa atattcatcg
     5401 acggcaaccg cattcccgaa catttgaaca tccctgccga agccgtcgtc aaaggcgaca
     5461 gcaaaatcat cgaaatatcc gccgcatccg ttttggcaaa gaccgcccgc gatgcggaaa
     5521 tgtacgcact ggcgcaacgc catccccaat acggtttcga caaacacaaa ggttacggca
     5581 cgaagcagca tttggaagcc ctcgaaaaat acggcgtgct gcccgaacac cgccgcgact
     5641 tcgcccccgt cagaaacctg ttcgcgcagc aggccttgtt ttaaaccggc acaaaaatgc
     5701 cgtctgaagc cttcagacgg catttccggc atcgcaactc caaagagaaa gaacccaaac
     5761 cgtcattcct gcgaaaaata gaaaatcaaa aaaa
//
LOCUS       DAXIFS010000118         5678 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.118, whole genome shotgun sequence.
ACCESSION   DAXIFS010000118 DAXIFS010000000
VERSION     DAXIFS010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5678
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.118"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(84..845)
                     /locus_tag="ACFOCA_001471"
     CDS             complement(84..845)
                     /locus_tag="ACFOCA_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988175.1"
                     /translation="MDANKEPNWEKRLENLRQTRRMKVVPTYAPLSRPSETGTDASVP
                     KLDDASRNRVLKAYLKKWQEEHNAAVADCGEEIETDPMIVLQENWLNAQASLQMSVSE
                     KHIESRRRIRFDTKKDSVEFETGQIEGGENADEAESGTNEPAVSENGENDAEETLMPV
                     QLNILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQL
                     QQMLHEQAGAVVEDVLEHDVRKILNDIKYELKYKR"
     gene            945..1196
                     /locus_tag="ACFOCA_001472"
     CDS             945..1196
                     /locus_tag="ACFOCA_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988176.1"
                     /translation="MGSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPADTAEVA
                     LESIQLAFEDALAELSYEDSPHTDLFHDVTYAFFREKER"
     gene            1248..2054
                     /locus_tag="ACFOCA_001473"
     CDS             1248..2054
                     /locus_tag="ACFOCA_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6988177.1"
                     /translation="MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASN
                     AEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMS
                     GVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSDDLKNMNKVGVVTGYTGDFSVS
                     KLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTLPDF
                     TTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYFAKEDEQAAK"
     gene            2361..3884
                     /locus_tag="ACFOCA_001474"
     CDS             2361..3884
                     /locus_tag="ACFOCA_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HFC6988178.1"
                     /translation="MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAA
                     KDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAY
                     TWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGGKVEVTCAAKGGGSENKSKLA
                     MLNPSDNIVDWVLKSIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQ
                     EKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAM
                     IPNCAATRHVEFELDGSGPVELTPPRVEDWPDLTYSPDNGKRVDVDKLTKEEVASWKT
                     GDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAG
                     PTTATRMDKFTRQMLEQTGLLGMIGKSERGVATCEAIADNKAVYLMAVGGAAYLVAKA
                     IKSSKVLAFPELGMEAIYEFEVKDMPVTVAVDSKGESIHATAPRKWQAKIGIIPVES"
     gene            3982..5394
                     /gene="trkA"
                     /locus_tag="ACFOCA_001475"
     CDS             3982..5394
                     /gene="trkA"
                     /locus_tag="ACFOCA_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HFC6988179.1"
                     /translation="MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRL
                     DVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRS
                     SEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRV
                     RMVIIQARRGGLLVGRSIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEIL
                     FAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAE
                     WIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRV
                     IGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVV
                     AHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVS
                     RRRILNELEKLIQVKMGFFG"
BASE COUNT         1426 a         1712 c         1383 g         1157 t
ORIGIN      
        1 atattttgcg cctgttccat gaggctttca agtcggatga gaatgcaaat gccgtctgaa
       61 acggctttca gacggcatgg caatcagcgt ttgtatttta actcgtactt gatgtcgttg
      121 aggattttgc ggacatcgtg ttccaacacg tcttcgacta ccgcccccgc ctgctcgtgc
      181 agcatctgct ggagctgata ggtgaaaacc gccatctgct tttgcaccgc cgttcggatg
      241 atgccgttga cggtatcggt cagatggggg cgcaggcgtt tgatcagccg ttcggtcagc
      301 tcctgttcgg acaggcagaa cacttcgcgc cggttgacgg ctttcgggtt caggatattg
      361 agttggacgg gcatcaacgt ttcttccgca tcgttttccc cgttttccga aaccgccggc
      421 tcattcgtgc cggattctgc ctcgtcggcg ttttccccgc cttcaatctg tccggtttca
      481 aattcgacac tgtctttttt ggtatcaaac cggattctcc gccgcgattc gatgtgtttt
      541 tccgaaaccg acatttgcag ggaagcctgc gcgttgagcc agttttcctg aaggacgatc
      601 atcgggtcgg tttcgatttc ttccccgcaa tcggcaacgg cggcattgtg ctcctcctgc
      661 catttcttca gatacgcctt taacacacgg tttcggcttg catcgtccag tttcggcaca
      721 gacgcgtccg ttccggtttc agaagggcgg gacagcggcg cgtaagtcgg cactaccttc
      781 atacggcgcg tctgacgcag gttttccaaa cgtttttccc aattcggctc tttattcgca
      841 tccattttcg gcttccggtc cttaatcttt gcaagcagac aaacccgcgc ccaaagcgcg
      901 gtttgatata atggcgcatt ttaacagatt cgcgaggata catcatgggc agcatcgaac
      961 agcgtttgga atatctggaa gaggcgaacg acgtgctgcg tatgcagaac cacgtcctgt
     1021 ccaccgcctt caaagcctta atccgcgccc ttcccgccga caccgccgaa gtcgcgctcg
     1081 agtccatcca gcttgctttt gaggacgcct tggcagaatt gagctatgag gacagcccgc
     1141 atacggattt gttccacgac gttacttatg cgtttttccg tgaaaaagaa cgttaatttt
     1201 atgttaaact gattttttag gctttttgat taccgaaagg aattttgatg aatatgaaaa
     1261 aatggattgc cgccgccctt gcctgttccg cactcgcgct gtctgcctgc ggcggtcagg
     1321 gcaaagatgc cgccgcgccc gccgcaaacc ccgacaaagt gtaccgcgtg gcttccaacg
     1381 ccgagtttgc cccctttgaa tctttagact cgaaaggcaa tgtcgaaggt ttcgatgtgg
     1441 atttgatgaa cgcgatggcg aaggcgggca attttaaaat cgaattcaaa caccagccgt
     1501 gggacagcct tttccccgcc ttgaacaacg gcgatgcgga cgttgtgatg tcgggcgtaa
     1561 ccattaccga cgaccgcaaa cagtctatgg acttcagcga cccgtatttt gaaatcaccc
     1621 aagtcgtcct cgttccgaaa ggcaaaaaaa tatcttcttc cgacgatttg aaaaacatga
     1681 acaaagtcgg cgtggtaacc ggctacacgg gcgatttctc cgtatccaaa ctcttgggca
     1741 acgacaatcc gaaaatcgcg cgctttgaaa acgttcccct gattatcaaa gaactggaaa
     1801 acggcggctt ggattccgtg gtcagcgaca gcgcggtcat cgccaattat gtgaaaaaca
     1861 atccgaccaa agggatggac ttcgttaccc tgcccgactt caccaccgaa cactacggca
     1921 tcgcggtacg caaaggcgac gaagcaaccg tcaaaatgct gaacgatgcg ttggaaaaag
     1981 tacgcgaaag cggcgaatac gacaagattt acgccaaata ttttgcaaaa gaagacgaac
     2041 aggccgcaaa ataagcccgc ccatccgaac acaatgccgt ctgaagccct ttcagacggc
     2101 attgttcatc aatcggccta caatgaactg cctgctgatt tctccctacc gcaaagcaac
     2161 aggcaaagat tacaaatatc aaaatccgag taaaacagta ttttattaaa acaaattgat
     2221 aatcaagaga ttagaattat gtattgtctt taccgtacaa acgctggcac tatttcaacc
     2281 tgataaaaaa cagccttcaa aaaggttgct taaaacagca gcagacactt accgccacaa
     2341 ccttgaaaag gaacacaatc atgaccgtca tcaaacagga agactttatc caaagcattt
     2401 gcgatgcctt ccaattcatc agctactacc atccgaaaga ctacatcgac gcgctttata
     2461 aggcgtggca gaaggaagaa aaccccgccg ccaaagacgc gatgacgcag attttggtca
     2521 acagccgcat gtgtgccgaa aacaaccgcc ccatctgcca agataccggt atcgcgaccg
     2581 tcttcctcaa agtcggtatg gatgtgcagt gggatgcgga catgagcgtc gaagaaatgg
     2641 ttaacgaagg cgtgcgccgc gcctacactt gggaaggcaa caccctgcgc gcctctgtcc
     2701 tcgccgatcc ggccggcaaa cgtcaaaaca ccaaagacaa cacccccgcc gtcatccata
     2761 tgagcatcgt gccgggcggt aaagtcgaag taacctgcgc ggcaaaaggc ggcggctctg
     2821 aaaacaaatc caaactcgcc atgctcaatc cttccgacaa catcgtcgat tgggtattga
     2881 aaagcatccc aaccatgggc gcaggctggt gtcctcccgg catcttgggc atcggcatcg
     2941 gcggcacgcc cgaaaaagcc gtgctgatgg caaaagagtc cctgatgagc cacatcgaca
     3001 ttcaagagtt gcaggaaaaa gcagcgtcag gtgcagaatt gtccaccacc gaagccctgc
     3061 gcctcgaact ctttgaaaaa gtcaacgcgc taggcatcgg cgcgcaaggc ttgggcggtc
     3121 tgaccaccgt gttggacgtg aaaatcctcg attacccgac ccacgccgcc tccaaaccga
     3181 ttgccatgat tccgaactgc gccgccaccc gccacgtcga atttgaattg gacggctcag
     3241 gccctgtcga actcacgccg ccgcgcgtcg aagactggcc cgatttgact tacagccccg
     3301 acaacggcaa acgcgtcgat gtcgacaagc tgaccaaaga agaagtggca agctggaaaa
     3361 ccggcgacgt attgctgttg aacggcaaaa tcctcaccgg ccgcgatgcc gcacacaaac
     3421 gcctcgtcga tatgctcaac aaaggcgaag aattgcccgt cgatttcacc aaccgcctga
     3481 tttactacgt cggccccgtc gatccggtcg gcgatgaagt cgtcggtccg gcaggtccga
     3541 ccacagccac ccgcatggac aaattcaccc gccaaatgct cgaacaaacc ggcctcttgg
     3601 gcatgatcgg caaatccgag cgcggcgtgg ccacctgcga agccatcgcc gacaacaaag
     3661 ccgtgtacct catggcagtc ggcggcgcgg cgtatctcgt ggcaaaagcc atcaaatctt
     3721 ccaaagtctt ggcgttcccc gaattgggca tggaagccat ttacgaattt gaagtcaaag
     3781 acatgcccgt aaccgtcgcc gtagatagca aaggcgaatc catccacgcc accgccccgc
     3841 gcaaatggca ggcgaaaatc ggcatcatcc ccgtcgaatc ttgaggcgcc atgccgtctg
     3901 aacacaaaat ctgccttcag acggcatttc cgcccccggt tgcggtacaa tccaccattt
     3961 catcactcgg cgacccacac cgtgaaaatc ctcattttag gcaacggaca ggtaggttct
     4021 accgtcgcac aaaaccttgc cgccataccc aacaacgacg taaccgttat cgacatcgac
     4081 gaaaaagcat tgcaggaaac aggcagccgc ctcgatgtcc aaaccgtttt cggcaacggc
     4141 gcatccccct tcacattaga acgcgccggc gcggaagatg ccgacttgct gctcgcgctc
     4201 tcccgcagcg acgaaaccaa catcgtcgcc tgcaaagttg ccgccgacct gttcaacatc
     4261 cccggccgca tcgcgcgcgt ccgttccagc gaatacctcg aatacctcag ccccaagctc
     4321 gaaaacaacg aaaacggcag cctttccata ttcggcataa ccgaaaccat cagccccgaa
     4381 cagctcgtta ccgaacagct tgccggcctg atagactgcc cgggcgcatt gcaggtttta
     4441 cgttttgcag acgaccgcgt gcggatggtc atcatacagg cgcggcgcgg cggactgctt
     4501 gtcggacgca gcattgccga catcgcccaa gatttgcccg acggggccga ctgccaaatc
     4561 tgcgccgttt accgcaacaa ccgcctcatc gtccccgcgc cgcaaaccgt catcatcgaa
     4621 ggcgacgaaa tcctatttgc cgccgccgcc gaaaacatcg gcgcggtcat acccgaattg
     4681 cgccccaaag aaaccagcac ccgccgcatc atgattgccg gcggcggcaa catcggctac
     4741 cgtctcgcca agcagctcga acacgcatac aacgtcaaaa tcatcgaatg ccggccgcgc
     4801 cgtgccgaat ggatagccga aaacctcgac aacaccctcg tcctgcaagg ttcggcaacc
     4861 gacgaaaccc tgctcgacaa cgaatacatc gacgaaatcg acgtattctg cgccctgacc
     4921 aacgacgacg aaagcaacat tatgtccgcc cttttggcga aaaacctcgg cgcgaagcgc
     4981 gtcatcggca tcgtcaaccg ctcaagctac gtcgatttgc tcgaaggcaa caaaatcgac
     5041 atcgtcgtct ccccccacct catcaccatc ggctcgatac tcgcccacat ccggcgcggc
     5101 gacatcgttg ccgtccaccc catccggcgc ggcacggcgg aagccatcga agtcgtcgca
     5161 cacggcgaca aaaaaacttc cgccatcatc ggcaggcgca tcagcggcat caaatggccc
     5221 gaaggctgcc acattgccgc cgtcgtccgc gccggaaccg gcgaaaccat tatgggacac
     5281 cataccgaaa ccgtcatcca agacggcgac cacatcatct ttttcgtctc gcgccggcgc
     5341 atcctgaacg aactggaaaa actcatccag gtcaaaatgg gctttttcgg ataaaccgcc
     5401 ccattccgga catattgccg ccaagcggta tggaagcgga ataatggtag gtgggcttca
     5461 gacggcatcc gccctccccg tcattcccgc gtaagcggga atccagacct tgggatagcg
     5521 gcaatattca aaggttataa aagacccgtc attcccgcgc aggcgggaat ccagaccttg
     5581 ggatagcggc aatattcaaa ggttagctga agctttagag attctagatt cccgtttcca
     5641 cgggaatgac gaaaggttgc gggaatccaa accattgg
//
LOCUS       DAXIFS010000119         5678 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.119, whole genome shotgun sequence.
ACCESSION   DAXIFS010000119 DAXIFS010000000
VERSION     DAXIFS010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5678
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.119"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(430..2226)
                     /locus_tag="ACFOCA_001476"
     CDS             complement(430..2226)
                     /locus_tag="ACFOCA_001476"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFC6988180.1"
                     /translation="MNTVSNYLSALREAMRAQGLDALVIPSADPHLSEYLPAHWQARR
                     ELSGFTGSVGTFVVTADEAGVWVDSRYWEQAAKQLAGSGIELQKSGQVPPYNEWLAAN
                     LPENAAVGIPSDMVSLTGKRTLAQSLTAKNIRIEHPNDLLDQVWTSRPAIPAETVFIH
                     DPAYVSETAAEKLARVRAVMAEKGADYHLVSSLDDIAWLTNLRGSDVPFNPVFVSFLL
                     IGKDNAVLFTDRCRLNAEAAAALQTAGITVEPYAQVADKLAQIGGALLIEPNKTAVST
                     LVRLPESVRLIEGINPSTLFKSCKSEADIARIREAMEHDGAALCGFFAEFEDIIGNGG
                     SLTEIDVDTMLYRHRSVRPGFISLSFDTIAGFNANGALPHYSATPESHSTISGNGLLL
                     IDSGAQYKGGTTDITRVVPVGTPTAEQKRDNTLVLKAHIALAEAVFPENIPSPLIDAI
                     CRKPLWQAQCDYGHGTGHGVGYFLNVHEGPQRIAFAAPTTPETAMKKGMVTSIEPGLY
                     RPGKWGIRIENLAANQAVAAPQETEFGSFLCFETLTLCPIDTRLMDTALMTDGEIDWV
                     NRYHAEVRRRLEPLTEGAAKAWLIKRTEPLAR"
     gene            2282..2623
                     /locus_tag="ACFOCA_001477"
     CDS             2282..2623
                     /locus_tag="ACFOCA_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988181.1"
                     /translation="MPSEKHNHLIKSPACCKTDGLIGWCVFARKKRCKVVCCKILGIK
                     CRFMPFFGSNMENIVKFEHEVLIVCVGRYLDYVTIRAFIKISLPGGILFLKTVGFGFV
                     WGQSRPNWSNR"
     gene            2684..3937
                     /locus_tag="ACFOCA_001478"
     CDS             2684..3937
                     /locus_tag="ACFOCA_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6988182.1"
                     /translation="MSEQHISTWKSKINALGPGIMMASAAVGGSHLIASTQAGALYGW
                     QIALIIILTNLFKYPFFRFSAHYTLDTGKSLIEGYAEKSRVYLWVFLILCILSATINA
                     GAVAIVTAAIVKMAIPSLMFDVGTVAALIMASCLIILVSGRYRALDRVSKIIIVTLSI
                     ATLAAAGIAMSRGMQMQPDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEK
                     QRINPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIGQLINM
                     YAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRGKDKTGNAEFFAWN
                     IWVAGSGLAVIFWFDGVMANLLKFAMIAAFVSAPVFAWLNYRLVKGDEKHKLTSGMNA
                     LALAGLIYLTGFTVLFLLNLAGMFK"
     gene            4092..5603
                     /gene="lysS"
                     /locus_tag="ACFOCA_001479"
     CDS             4092..5603
                     /gene="lysS"
                     /locus_tag="ACFOCA_001479"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFC6988183.1"
                     /translation="MSEQNHPQTEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDS
                     FAADLHAQYGEIGKEELDPQGIPVKVAGRMMLKRQMGKASFATIQDVSGQIQLYLNNK
                     GVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS
                     DQETKYRQRYVDLIANGESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGAT
                     AKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTM
                     IEFYEAFSDYERMMQMAEDIIRNASRTVNGTAKISYNGKEVDLESPFERLTILEAIKK
                     YNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIVDY
                     PVEVSPLARASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKAQVAQKDAGD
                     DEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDSQTIRDVILFPQMRPE"
BASE COUNT         1231 a         1437 c         1651 g         1359 t
ORIGIN      
        1 attgtcattc ccacgcaggt gggaatctag tctgttcggt ttcagttatt tccgataaat
       61 tcctgctgct ttttatttct agattcccac tttcgtggga atgacgaaaa gttgcgggaa
      121 tgacggttcg ggcattcctt aaatcacccg tgtatcgctg taaatcttag agatgacgga
      181 atatagcgga ttaacaaaaa ccagtacggc gttgcctcgc cttagctcaa agagaacgat
      241 tctctaaggt gctgaagcac cgagtgaatc ggttccgtac tattcgtact gtctgcggct
      301 tcgtcgcctt gtcctgattt ttgttaatcc actatatttg cttgcggcaa gatgaaaacg
      361 gtgcgggatg ttttgggaaa ccaatgccgt ctgaagggct ttcagacggc attttttgcg
      421 ccgtgctgtt taacgcgcca gcggttcggt gcgtttgatc agccacgctt ttgccgcgcc
      481 ttcggtcagc ggctcgaggc ggcggcggac ttcggcgtgg tagcggttga cccagtcgat
      541 ttcgccgtcg gtcatgaggg cggtgtccat caggcgggtg tcgatggggc agagggtcag
      601 ggtttcaaaa cagaggaagc tgccgaattc ggtttcttga ggggcggcga cggcttggtt
      661 ggcggcaagg ttttcaatgc ggatgcccca ttttcccggg cggtagagtc cgggttcgat
      721 ggaggtaacc atgccttttt tcatggcggt ttcgggcgtg gtgggggcgg cgaaggcgat
      781 gcgctgcggg ccttcgtgga cgttgaggaa atagcctacg ccgtgtccgg tgccgtggcc
      841 gtagtcgcat tgcgcctgcc acaggggttt gcggcaaatc gcatcaatca gcggcgaggg
      901 gatgttttcg gggaacacgg cttcggcaag cgcgatatgg gctttgagaa cgagggtgtt
      961 gtcgcgtttt tgttcggcgg tgggtgtgcc gacagggacg acgcgggtga tgtcggtcgt
     1021 gccgcctttg tattgcgcgc cggagtcgat gagcaaaagc ccgttgccgc tgatggtgct
     1081 gtggctttcg ggtgtcgcgc tgtaatgcgg cagtgcgccg ttggcgttga agcctgcgat
     1141 ggtgtcgaaa ctcaatgaaa tgaagcctgg gcgcacgctg cggtggcgat aaagcatggt
     1201 gtccacgtcg atttcggtca ggctgccgcc gttgccgatg atgtcttcaa actcggcgaa
     1261 gaaaccgcac aacgccgcgc cgtcgtgttc catcgcttcg cggatgcggg cgatgtcggc
     1321 ttcggatttg caggatttga acagcgtgga cgggttgatt ccctcgataa ggcgcacgct
     1381 ttcgggcagg cgcacaagcg tgctgacggc ggttttgttc ggttcgataa gcaacgcgcc
     1441 gccgatttgc gcgagtttgt cggcaacttg ggcgtaaggc tcgaccgtga tgcctgcggt
     1501 ttgcagcgcg gcggcggctt cggcgttcag acggcatcgg tcggtaaaca ggacggcgtt
     1561 gtctttgcca atcagcagga aggacacgaa aacggggttg aaaggcacgt cgctgccgcg
     1621 caggttggtc agccaggcga tgtcgtcaag cgaggaaacc aagtggtaat ccgcgccttt
     1681 ttccgccatg acggcgcgca cgcgggcgag tttttcggcg gcggtttcgg agacgtaggc
     1741 ggggtcgtgg atgaacacgg tttcggcggg gatagcggga cggcttgtcc acacttggtc
     1801 aagcagatcg tttgggtgtt cgatgcggat gtttttggcg gtcagggatt gcgccaaagt
     1861 gcgtttgccg gtgagcgaga ccatatcgga agggatgccg acggcggcgt tttcgggcag
     1921 gtttgccgcg agccattcgt tatacggcgg cacttgcccg cttttttgca gttcgatgcc
     1981 gctgcccgca agctgcttgg cggcttgttc ccaatagcgg ctgtccaccc atacgcccgc
     2041 ttcatcggcg gtaacgacga atgtgccgac cgagccggta aagcccgaca attcgcggcg
     2101 cgcctgccag tgtgcgggca ggtattcgga caggtggggg tcggcggaag ggatgacgag
     2161 tgcgtccaag ccttgcgccc tcatggcttc gcgcaatgcg gacaggtaat tcgatacggt
     2221 attcataata gttcctccaa tcgggttttg cggcttcaga cggcatggac ggaaatctga
     2281 aatgccgtct gaaaaacata accatcttat caaatcgcca gcctgctgca aaacggacgg
     2341 gctgatcgga tggtgcgtgt ttgcgcgaaa aaagcgatgt aaggttgttt gttgtaaaat
     2401 tttaggcata aaatgtcgtt tcatgccttt ttttggaagt aatatggaaa atatagtcaa
     2461 gtttgagcat gaagttctaa tagtgtgtgt tggcaggtat ttggattacg ttacaatacg
     2521 cgctttcatc aaaatttccc taccgggcgg tatcctgttt ttgaagacgg taggatttgg
     2581 gtttgtttgg gggcaatccc gcccaaattg gagcaataga tagggctgtg tccgaatatg
     2641 cggctctgtg tgttgaaaca cggttaaaaa tacggaagac tttatgtccg aacaacatat
     2701 ttcgacttgg aaaagtaaaa tcaacgcatt gggtccgggg atcatgatgg cttcggcggc
     2761 ggtcggcggt tcgcacctga ttgcctcgac gcaggcgggc gcgctttacg gctggcagat
     2821 cgcgctcatc atcatcctga ccaacctctt caaatacccg tttttccgct tcagcgcgca
     2881 ttacacgctg gacacgggca agagcctgat tgaaggttat gccgagaaaa gccgcgttta
     2941 tttgtgggta ttcctgattt tgtgcatcct ctccgccacg attaacgcgg gcgcggtcgc
     3001 cattgtaacc gccgccatcg tcaaaatggc gattccctcg ctgatgtttg atgtcggcac
     3061 ggttgccgcc ttgattatgg catcctgcct gattattttg gtgagcggac gttaccgcgc
     3121 tttggatcgc gtttccaaaa tcatcatcgt tactttgagt atcgccacgc ttgctgccgc
     3181 cggcatcgct atgtcgcgcg gtatgcagat gcagcccgat tttatcgagc cgacaccgtg
     3241 gacgcttgcc ggtttgggct tcctgatcgc gctgatgggc tggatgcccg cgccgattga
     3301 aatttccgcc atcaattctt tgtgggtaac cgaaaaacaa cgcatcaatc cttccgaata
     3361 ccgcgacggg atttttgatt tcaacgtcgg ttatatcgcc agtgcggttt tggctttggt
     3421 tttccttgca ctgggtgcgt ttgtgcaata cggcaacggc gaagcagtgc agatggcggg
     3481 cggcaaatat atcgggcaat tgatcaatat gtacgccgtt accatcggcg gctggtcgcg
     3541 cccgctggtg gcgtttatcg cgtttgcctg tatgtacggc acgacgatta ccgtcgtgga
     3601 cggctatgcc cgtgccattg ccgaacccgt gcgcctgctg cgcggaaaag acaaaacggg
     3661 caacgccgaa ttctttgcct ggaatatttg ggtggcgggc agcggtttgg cggtgatttt
     3721 ttggtttgac ggcgtaatgg cgaatctgct caaatttgcg atgattgctg cttttgtgtc
     3781 cgcccctgtg tttgcctggc tgaattaccg tttggtcaaa ggtgatgaaa aacacaaact
     3841 cacatcaggt atgaatgccc ttgcattggc aggcttgatt tatctgaccg gttttaccgt
     3901 tttgttctta ttgaatttgg cgggaatgtt caaatgataa cgatgccgtc tgaaaccgca
     3961 aaccgctttc agacggcatt gtcgcgttta tggaaaaaaa tgccgacatc gcgtaaaata
     4021 tgcgcaaatt ttgtgattcg gtcaggtcgt ctgaaacaga ttgcgcctga tttatttttt
     4081 cggaaaaccc tatgagcgaa caaaaccatc cgcaaaccga gccgcagttg gacgaaaacc
     4141 aaatcatcgc cctgcgccgc gaaaaactgc acaacatccg ccaacagcgc aacgcctatc
     4201 ccaacgactt caaacgcgac agcttcgccg ccgatttgca cgcccaatac ggcgaaatcg
     4261 gcaaagaaga actcgatccg caaggcattc ccgtcaaagt ggccggccgc atgatgctga
     4321 agcgtcaaat gggcaaggcg agctttgcca ccattcaaga cgtgtccggg caaatccagc
     4381 tttatctgaa caacaaaggc gtgagccaag aagttttgga cgacttcaac cattgggatt
     4441 tgggcgacat cgtcggcgcg gaaggcactt tgttcaaaac caaccacggc gaactgaccg
     4501 tacgcgtgtc cgacatccgc ctgttgtcca aatccttgcg tccgctgccg gacaaacaca
     4561 aaggcttgag cgatcaggaa accaaatacc gccaacgcta tgttgatttg attgccaacg
     4621 gagaatcgcg caataccttc atcaaacgca gccaaatcat ccaatccgtg cgtaatttta
     4681 tggtgggcga gcattatctc gaagtcgaaa ccccgatgat gcacccgatt cccggcggcg
     4741 cgacggcaaa acccttcgtt acccaccaca atgccttgga cattccgctc tacctgcgca
     4801 tcgcccccga gctgtatctg aaacgcttgg ttgtcggtgg tttggaacgc gtgtttgaaa
     4861 tcaaccgcag cttccgcaac gaaggtatgt ctgtgcgcca caatcccgaa tttacgatga
     4921 ttgaatttta cgaagccttc tccgactacg aacgcatgat gcaaatggcg gaagacatca
     4981 tccgcaacgc atcgcgcacg gtaaacggca cggcaaaaat cagctacaac ggcaaagaag
     5041 tcgatttgga aagcccgttt gaacgcctga ccattctcga agccatcaaa aaatacaatc
     5101 cgcactacac cgacgagcag ttgaacgatg cggaatggct gaaaaaagaa atcgtcaaac
     5161 acggcgaaag cctgccgccg tccccgggca tcggcagcct gcaactcgcg ctgtttgaag
     5221 gttgcgccga aggcaaactg tggaacccga ccttcatcgt cgattatccg gtcgaagttt
     5281 ccccgttggc acgtgcttcc gataccaaac aaggtctgac cgaacgattc gagcttttcg
     5341 ttgtcggccg cgaactggca aacggctatt ccgagttgaa cgaccccgaa gaccaagccg
     5401 aacgcttcaa agcgcaagtg gcgcaaaaag acgcgggcga cgacgaagcc atgcactacg
     5461 atgccgacta catccgcgcg atggaattcg gtctgccgcc gacaggcggc tgcggcatcg
     5521 gtatcgaccg cttagtgatg ctgctgaccg attcgcaaac catccgcgat gtgattctgt
     5581 ttccgcagat gcgtcccgag taatcataaa aacagttgaa atagaaatgc cgtctgaacc
     5641 cgattggatt cagacggcat tttgtatggc aggattga
//
LOCUS       DAXIFS010000120         5493 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.120, whole genome shotgun sequence.
ACCESSION   DAXIFS010000120 DAXIFS010000000
VERSION     DAXIFS010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5493
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.120"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(30..467)
                     /locus_tag="ACFOCA_001480"
     CDS             complement(30..467)
                     /locus_tag="ACFOCA_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988184.1"
                     /translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
                     GLDFVAVFDHEGQRIGFYSSGDNEYEVRRNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
                     YAELLHGDVNIINWCEKFEPTDEDNERAVKELFKSFKNIINKL"
     gene            complement(467..1768)
                     /gene="nuoF"
                     /locus_tag="ACFOCA_001481"
     CDS             complement(467..1768)
                     /gene="nuoF"
                     /locus_tag="ACFOCA_001481"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HFC6988185.1"
                     /translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
                     QTDVIDEIKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
                     MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
                     DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
                     FSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
                     MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
                     ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
                     ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
     gene            complement(2158..2631)
                     /gene="nuoE"
                     /locus_tag="ACFOCA_001482"
     CDS             complement(2158..2631)
                     /gene="nuoE"
                     /locus_tag="ACFOCA_001482"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HFC6988186.1"
                     /translation="MLSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPET
                     IAFVADYIGITPAQAYEVATFYNMYDLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
                     LGIGYGETTPDGKFTLVEGECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELE"
     gene            complement(2631..3887)
                     /gene="nuoD"
                     /locus_tag="ACFOCA_001483"
     CDS             complement(2631..3887)
                     /gene="nuoD"
                     /locus_tag="ACFOCA_001483"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFC6988187.1"
                     /translation="MANKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLL
                     HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMF
                     AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
                     YRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
                     RIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
                     GDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
                     HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
                     MAKGHMLADVVAIIGTQDIVFGEVDR"
     gene            complement(3877..4470)
                     /locus_tag="ACFOCA_001484"
     CDS             complement(3877..4470)
                     /locus_tag="ACFOCA_001484"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFC6988188.1"
                     /translation="MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTA
                     LRDHEELHFELLVDLCGVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDD
                     FPVVESVVDIYNSADWYEREAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
                     VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
     gene            complement(4483..4965)
                     /locus_tag="ACFOCA_001485"
     CDS             complement(4483..4965)
                     /locus_tag="ACFOCA_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFC6988189.1"
                     /translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
                     AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
                     ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
                     "
     gene            complement(4956..5312)
                     /locus_tag="ACFOCA_001486"
     CDS             complement(4956..5312)
                     /locus_tag="ACFOCA_001486"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HFC6988190.1"
                     /translation="MLSAYFPVFVFILVGLAASVLFILLGTILGPKRHYAEKDAPYEC
                     GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
                     TVGFVYEWKKGALEWE"
BASE COUNT         1342 a         1383 c         1390 g         1378 t
ORIGIN      
        1 gcttttaacc aatataaaac caactaaaac tataacttat ttattatatt tttaaatgac
       61 ttaaataact ctttaacagc acgctcattg tcttcatctg taggctcaaa cttttcacac
      121 caattaatta tatttacatc gccatgcaat aactctgcat aacatcctac tgcatcgcaa
      181 ctaccacccc gtgtccttga cgtgccaaaa ataaaatcac aattatgcga ataaagtttg
      241 tataaatttc tcctaacctc gtattcatta tcaccagatg aataaaaacc aatcctctga
      301 ccttcatgat caaatactgc aacaaaatct aagccgtttc catgtctttc aaaaaagact
      361 agaaatttag aaaatttccg acaaatctga ttaaaaagcg tattgagtgt cgtactctta
      421 cctttgttgg ctgcaccgta tagaataaaa attttagctt ccaccattac caccctcccc
      481 acttatgctc tttcatcggt ccgccgtgtt cgatgtaatg cacaaactca tcacggaaat
      541 gcttggtaaa gcttcggacg gggaagacgg cggcatcggc aagggcgcag atggtgcggc
      601 ctgccatttg gttgccgaca gaatccagca aatccaaatc ttccatttta cctttgcctt
      661 ctacgatgcg gtggacgatg cggtaaagcc agccggtgcc ttctcggcaa ggcgtacatt
      721 ggccgcaaga ctcgtcgtag tagaagtagc tcaggcgctc aagggctttc accatgcaca
      781 cgtcttcgtc catgacgata atcgcgccag aacccagcat cgagcctgct ttggaaatcg
      841 agtcgtagtc catatttgtc tgcatcatga tgtcggcagg caatacgggc gcggacgaac
      901 cgccgggaat gacggctttg agttttttgc cgccgcgcat accgcctgcc attttcaaga
      961 cttcggcaaa cggtgtgccc aatggcactt catagttgcc cggacgctcg acatggccgg
     1021 aaatacagaa taatttggta ccgcctgcat tcggaatacc tttatcggca aatgcctgtc
     1081 cgccgtcacg gataatgaat gaaacggagg agaaagtttc ggtattgttg atggtagtcg
     1141 gtttgccgta caggccgaac gaagcaggga atggcggttt aaagcgcggc tggccttttt
     1201 tgccttccag cgattcaagc aatgcggttt cttcgccgca gatgtatgca ccgtagccgt
     1261 ggtgggcgaa gagttcgaat tcaaaatccg aacccaaaat atttttaccc aaaaagcctg
     1321 cggcacgcgc ctgctccaaa gcggcctcaa agcgttggta gccttcaaaa atttcgccgt
     1381 ggatatagtt gtaaccggct ttcgcgccca tcgcgtaacc ggcgataatc atgccttcaa
     1441 tcagggcatg ggggttgaac ataataatgt cgcggtcttt aaatgtaccc ggctcgcctt
     1501 cgtcggtgtt gcaaacgacg tacttttcgc cggggaaaga acggggcata aagctccatt
     1561 tcaaaccggt cgggaagccc gcaccgccac gaccgcgcaa gccggaggtt ttgatttcgt
     1621 caatcacatc ggtttgcgag atgttttcgg acaggatttt acgcagggcg gtataaccgc
     1681 cacgtttgac gtattcgtcc aatgtccagc aatcgggatt ggcggtatcc acttggtcaa
     1741 aaatcacgcc tgattggtaa atagccattt ttggtgtgcc tgtttgtttt cgtatcggtt
     1801 gcggccgctg ttgcagacga ccttaagatg tctttgtgta ccggcttgta acgtcgtctg
     1861 aaataaaatc tagtttatca aatcgatatt ttcagacgac ctttaatcgt ttttgttgga
     1921 tctcgaccac ttgcttgtct gtcgtcattc ccgcgcaggc gagaatccat cctcaatggt
     1981 aagcaatgtc ttattaaatt cagaaaccga atcttaccgg tggattcccg cctgcgcggg
     2041 aatgacggca tttcggtatt tcagtagggc ggattcttaa atccgacatt ttgccttttt
     2101 acccactctg tcggatacaa gtatccgacc tacgtttaaa tcgtcgtttc agacgaccta
     2161 ctccaactcc gccagtttct tctcaatcgc ttcttcggtc ataaagctgc acatgctgtg
     2221 gttgttgacc agcataacgg gggcatcacc gcatgcgccc atgcattcgc cttcgacaag
     2281 ggtaaacttg ccgtcagggg tagtttcgcc gtagccgata ccgagttttt gtttgaggta
     2341 ttcgccggta gccataccgc cgcgcagggc gcagggcagg ttggtacaaa cggtcagttt
     2401 gtatttgccg acaggctcaa ggtcgtacat attgtagaaa gtggcgactt cgtaggcttg
     2461 tgcaggcgtg atgccgatat agtcggcaac aaaagcgatg gtttcggggg cgagccagcc
     2521 tttttcggtt tgggcgatac gcaacgcacc catgatggcg gaacggcgtt ggtcggcggg
     2581 atatttcgcc agttctgtgt cgatttgttt taaggactct gcggataaca ttatcggtca
     2641 acctccccga atacgatgtc ctgcgtaccg atgatggcaa cgacgtcggc gagcatgtgg
     2701 ccttttgcca tttcgtccat gccttgcaga tgggcgaagc cgggtgcgcg gattttcagg
     2761 cggtagggtt tgtttgcgcc gtctgaaatg atgtaaacgc cgaactcgcc tttcggatgt
     2821 tcgacagcgg tgtaggtctc gccctcggga acgtgcatac cctcggtaaa gagtttgaaa
     2881 tggtgaatca ggtcttccat acctgttttc atttcggtac gtttgggcgg agcgaatttg
     2941 tggtttgtgg taatgaccgg acccggattg acacgcaacc actcggaaca ttgtttgatg
     3001 atgcgtacgg attgacgcat ttcttccata cggcagaggt agcggtcgta gcagtcgccg
     3061 ttcacgccga cagggatgtc gaaatccatt ttgtcgtaca cttcgtaagg ctgtgtctta
     3121 cgcacgtccc attccacgcc cgaaccgcgc aacatcacgc cggtaaagcc tttttgcatg
     3181 gcacgttcgg gggagacgac gccgatgccg acggtacgct gtttccaaat acggttgtcg
     3241 gtcaagaggg tttcgagtgt gtcgatgttt ttcgggaaac gctcgcagaa ggcgtcgata
     3301 aagtcgagca tagtgccttc acgggattcg ttgagctgct tcaatacttt ggcattgcgg
     3361 aatttgctgc tctcgtattt gggcatgaag tcgggcaggt cgcggtaaac gccgccggga
     3421 cggaagtagg ctgcgtgcat acgtgcgccg gacacggctt cgtacaagtc catcagctct
     3481 tcgcggtcgc ggaaggcgta aaggatggcg gtcatcgcgc cgatgtcgaa ggcgtgcgaa
     3541 ccgatgccca tcaagtgatt gaggatgcgc gttacttcgg caaacatcac gcggatatat
     3601 tgggcgcgga taggtacatc gataccggca agtttttcta ctgccaagca atacgcctgc
     3661 tcgttgacca tcatggaaac atagtccaag cgatccatat agggcagggc ttgcagatag
     3721 gttttggttt ccgccagttt ttcagtacct cggtgcagga ggccgatgtg cggatcggca
     3781 cggacgatgg tttcgccctc caactccaaa atcatacgca atacgccgtg cgccgcaggg
     3841 tgttgcgggc cgaagttgat ggtgtagttt cttaatttat tggccaccgt agttctcctc
     3901 acggacgata cgcggcgtga tctcgcgcgg ctcgatggta acgggttggt aaatcacgcg
     3961 tttttgctct tcgtcgtaac gcatttccac atagccggaa atcgggaagt ctttgcggaa
     4021 cggatgtccg acaaagccgt aatcggtcag gatgcggcgc aagtccgggt ggttgttgaa
     4081 catgatgccg tacaaatcga aggcttcgcg ttcgtaccaa tccgcgctgt tgtaaatatc
     4141 gactacggat tcaactacgg ggaagtcgtc gtctgaaacc cagacgcgta cgcggatgcg
     4201 ttgattgttt ttaacggaaa gcagctgact gacgacggca aagcgtttgc cctgccatgc
     4261 ttcgtttttg taagtgctgt aatcgacacc gcacaaatcg accagaagct cgaaatgcag
     4321 ctcttcatga tcgcgcaatg cggtcatgac tgaaatatag tgttcgggca gacactcgac
     4381 ggtaatctcg cccaaagctg aaatgacttt gcctgcctga ttgcccaaaa cgcggctgac
     4441 ggtttcgtat aagttttgaa tgcttgccat atcttcctcc tcttactcgt cacgcgcgat
     4501 ggtggaagtg cgcttgattt tttgttggag ctgaatcagg ccgtaaatca gggcttccgc
     4561 agtcggcgga caacccggca cataaacgtc taccggcacg acgcggtcgg caccgcgcac
     4621 aacggaataa gaatagtgat aatagccgcc gccgttggca cacgagccca tagacaatac
     4681 ccagcgcggc tcggcgagct ggtcatacac gcggcgcagg gcgggtgcca ttttgttggt
     4741 cagcgtaccc gccacaatca tcaggtcggc ctgacgtggg gacggacgga aaatgatgcc
     4801 gaaacggtca aggtcataac gcgccatacc cgcgtgcatc atttccacgg cgcagcaggc
     4861 caagccgaaa gtaaccggcc acaacgaacc ggtacgcata tagttcaaca ccgtatccgc
     4921 gctggtggtg atgaaacctt ttttcaaaac gccttctatt cccattccag cgcacctttt
     4981 ttccattcgt aaacaaagcc taccgtcaga acgacgataa acaccagcat agaccagaag
     5041 ccgtacgcgc ccaaatcttt gaacacgact gcccacggca acatgaacgc gacctccaaa
     5101 tcaaacaaga taaagaggat ggcgacgagg taatagcgca cgtcgaactt catcctggcg
     5161 ttttcaaagg cttcaaaacc gcattcgtaa ggcgcgtctt tttcggcgta gtggcgtttc
     5221 gggcctaaaa tcgtgccgag caggataaac agcacgctgg ccgcgaggcc gacgaggata
     5281 aagacaaaga cgggaaagta agcggacaac atggttacac ccaaatccgt taacaaaatt
     5341 tctacaataa tttcgtattt tagcgaattt caaaaaccat taaaaggtaa atatcggcaa
     5401 aacgcccaaa aaaacccaat aaatacaatc atgttatgat aacgattctt atttgatttt
     5461 ataaggtcat ataaattttt acaccgtaat tcg
//
LOCUS       DAXIFS010000121         5492 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.121, whole genome shotgun sequence.
ACCESSION   DAXIFS010000121 DAXIFS010000000
VERSION     DAXIFS010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5492
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.121"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..242)
                     /locus_tag="ACFOCA_001487"
     CDS             complement(<1..242)
                     /locus_tag="ACFOCA_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
                     /protein_id="HFC6988191.1"
                     /translation="MEDKQGMKKAVAGVMTDASSDGRKPATASNLPPLSNRGGTETET
                     AGRVQEVFECYEKYITDGKGNLLGVPLRRGVSDSAF"
     gene            344..654
                     /locus_tag="ACFOCA_001488"
                     /pseudo
     CDS             344..654
                     /locus_tag="ACFOCA_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684347.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(711..1769)
                     /gene="trpD"
                     /locus_tag="ACFOCA_001489"
     CDS             complement(711..1769)
                     /gene="trpD"
                     /locus_tag="ACFOCA_001489"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFC6988192.1"
                     /translation="MITPQQAIERLISNNELFYDEMTDLMRQIMRGQVLPEQIAAILT
                     GLRIKVETVSEITAAAAVMREFATKVPLENAEGLVDIVGTGGDGAKTFNISTTSMFVA
                     AAAGAKVAKHGGRSVSSSSGAADVVEQMGANLNLTPEQVAQSIRQTGIGFMFAPNHHS
                     AMRHVAPVRRSLGFRSIFNILGPLTNPAGAPNQLLGVFHTDLCGILSRVLQQLGSKHV
                     LVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRRNLDEIKVANTQESL
                     LKMNEVLEGREGAARDIVLLNTAAALYAGNVAASLSDGISAAREAIDSGRAKSKKEEF
                     VGFQPQQRCHFLGKMELG"
     gene            complement(1834..2424)
                     /locus_tag="ACFOCA_001490"
     CDS             complement(1834..2424)
                     /locus_tag="ACFOCA_001490"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFC6988193.1"
                     /translation="MLLFIDNYDSFTYNIVQYFTELGQEVAVRRNDDITLEEIEALNP
                     QYLVIGPGPCSPKEAGISVAAMRHFAGRLPIMGVCLGHQTIGEAFGGRIVRAKTLMHG
                     KVSPVYHSGKGMFKGLPNPVTCTRYHSLVIERGTLPECLEITAWTEDGEIMGVRHKEY
                     AVEGVQFHPEALLTEYGHDMLNNFFIEFQNFKPQKI"
     gene            2846..5122
                     /gene="znuD"
                     /locus_tag="ACFOCA_001491"
                     /gene_synonym="tdfJ"
     CDS             2846..5122
                     /gene="znuD"
                     /locus_tag="ACFOCA_001491"
                     /gene_synonym="tdfJ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_118820519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc receptor ZnuD"
                     /protein_id="HFC6988194.1"
                     /translation="MAQTTLKPIVLSILLINTPLLAQAHETEQSVDLETVSVVGKSRP
                     RATSGLLHTSTASDKILSGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTG
                     RRIKVLNHHGETGDMADFSPDHAIMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVAD
                     GKIPEKMPENGVSGELGLRLSSGNLEKLTSGGINIGLGKNFVLHTEGLYRKSGDYAVP
                     RYRNLKRLPDSHADSQTVSIGLSWVGEKGFIGVAYSDRRDQYGLPAHSHEYDDCHADI
                     IWQKSLINKRYLQLYPHLLTEEDIDYDNPGLSCGFHDDDDAHAHTHSGRPWIDLRNKR
                     YELRAEWKQPFPGFEALRVHLNRNDYRHDEKAGDAVENFFNNQTQNARIELRHQPIGR
                     LKGSWGVQYLQQKSSALSAISEAVKQPMLLDNKVQHYSFFGVEQANWDNFTLEGGVRV
                     EKQKASIRYDKALIDRENYYNHPLPDLGAHRQTARSFALSGNWYFTPQHKLSLTASHQ
                     ERLPSTQELYAHGKHVATNTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNRF
                     GNYIYAQTLNDGRGPKSIEDDSEMKLVRYNQSGADFYGAEGEIYFKPTPRYRIGVSGD
                     YVRGRLKNLPSLPGREDAYGNRPFIAQDDQNAPRVPAARLGVHLKASLTDRIDANLDY
                     YRVFAQNKLARYETRTPGHHMLNLGANYRRNTRYGEWNWYVKADNLLNQSVYAHSSFL
                     SDTPQMGRSFTGGVNVKF"
BASE COUNT         1405 a         1545 c         1256 g         1286 t
ORIGIN      
        1 atgaacgccg aatcagatac accgcgacga agcggaacgc ctaaaaggtt tcctttgccg
       61 tctgttatgt acttttcata acactcgaag acttcttgaa ccctgcccgc cgtttcggtt
      121 tctgtacccc ccctgttaga taagggggga agatttgaag cggttgccgg cttcctgccg
      181 tccgatgacg cgtccgtcat cacgccggca accgcctttt tcatcccttg cttatcttcc
      241 atggtgcgaa tcctcaaaaa cgggcaaaaa aaagccctgt tacttgtaga aagtaaagga
      301 cgttaatttt tgttaatcgt cccttcttag ggacgcaata tataaggttt ataccgtcgt
      361 tgttcctaat gcgcaatcag cgacattgtt gccaattatc cgaaagaaag ttaagcctga
      421 tggcattgta tacacggata cctttcgtag ttatgatgtg cttgatatta gtgaatttag
      481 ccatttacgt aagtttaacg gcattcccaa agagcatttg gggctgcatt taaagaaatg
      541 ccaatggcat tttaaataga atctcaaatt cagattttaa gacaattagt taatgggaat
      601 ttggtctggt tatctagtac agccccaagt ttttatataa aaacagtttg gtaagttctc
      661 ttcgtgaagt gcttatgttt tgccacaaaa gttccataat catggcggca tcacccaagc
      721 tccatctttc caagaaaatg gcatctttgt tgtggttgaa aaccgacaaa ctcctctttt
      781 ttcgatttgg ccctgcctga atcgatggct tcccgtgcgg cagatatgcc gtctgaaagc
      841 gaagcagcga catttccggc atacagggcg gcggcggtgt tgagcaatac gatatcgcgc
      901 gcagcccctt ctcttccttc cagcacctca ttcattttca acaaagattc ctgagtattg
      961 gcaactttga tttcatccaa attgcggcgg gtttcgatac cgaaatcttc tgggcggatg
     1021 tcgtattcgc tgatttttcc gtctttgagc tcggcaacgc gtgttttgcc cgtcagtgta
     1081 atttcatcca aaccgccctc cccgcaaaca accaaaacgt gttttgaacc aagttgttgc
     1141 aagacccgcg acaaaatgcc acacaaatcg gtgtggaaca cgcccaaaag ctggttcggc
     1201 gcgcccgcag gattcgttaa cggacccaat atgttgaaaa tacttcggaa accgagcgaa
     1261 cggcgtacag gggcgacatg gcgcatggca ctgtggtgat tgggcgcgaa cataaacccg
     1321 atgccggtct gcctgatact ttgggcaacc tgttcgggag tcaggttgag gtttgcgccc
     1381 atctgctcca ccacgtcagc cgcaccgctg gaggaagaga ccgaccggcc tccgtgtttg
     1441 gcaaccttcg cgcctgccgc tgcggcaaca aacatcgaag tcgtcgaaat attgaaggtt
     1501 ttcgcgccat ccccgcccgt accgacgata tcgaccagcc cctctgcatt ctccagcggc
     1561 acttttgtcg caaactcacg catgacggct gcagctgcgg taatttcgga aacggtttca
     1621 accttgatac gcaatcctgt caaaatggcc gctatctgct ccggcagaac ctgtcctctc
     1681 ataatctgac gcatcaagtc ggtcatttca tcgtaaaaca actcgttatt gctgattaat
     1741 cgttcgatgg cctgttgcgg tgtaatcatt tttttgtcct ccgttcaata ttcggacgaa
     1801 aatgccgtct gaagggcttc agacggcatc acgtcagatt ttttgcggtt tgaagttttg
     1861 aaattcgata aaaaaattgt tcaacatatc atgtccgtat tcggtcagca gagcttcagg
     1921 gtggaattgt accccctcaa cggcatattc cttatggcgc acgcccataa tctcgccgtc
     1981 ttccgtccat gccgtgattt ccaaacattc gggcagcgtg ccgcgttcga taacgaggct
     2041 gtgataacgc gtacaggtaa ccggattggg caaaccctta aacataccct tgcccgaatg
     2101 gtacacgggc gacaccttgc cgtgcatcag cgttttggcg cggactatcc tgccgccgaa
     2161 cgcctcgcct atcgtctgat gcccgaggca cacgcccata atcggcagcc tgccggcaaa
     2221 atggcgcatc gccgccacgg aaatccccgc ttctttgggc gaacacggac cggggccgat
     2281 aacgagatat tgcggattca atgcctcgat ttcctccaac gtaatatcat cgttgcggcg
     2341 cacggcaact tcctgcccca attcagtgaa atactggacg atgttgtaag taaaactgtc
     2401 gtaattgtcg ataaacaaaa gcattttgtg attaacctat tgatttataa tttgtttgtt
     2461 attaactgca tttccgatac ccccatccat accctcttat atcttagcgt gcccgatgcg
     2521 ccctcgtgaa cctggcgcag agcctcgcgt tctgacaagt acgccatttt gccacctttt
     2581 cgaccgttcg ggaacgtgcc gtttttatgc actcataaat tttggttatc ccgcagccga
     2641 acataatggg caaacacagc ggaatctgcg tcaacatcaa ccgcgccccc gaaggacggc
     2701 ggatacaaat ggacaccgcc cgatgccgca accgtttcat ttgaaaaact tttgcctatg
     2761 ccctctgagt gttctcaaaa tcttatgata taaggaatgc aatgttatat aataacaaac
     2821 ttttgaaatg cgacgagaag ccaaaatggc acaaactaca ctcaaaccca ttgttttatc
     2881 aattctttta atcaacacac ccctcctcgc ccaagcgcat gaaactgagc aatcggtgga
     2941 tttggaaacg gtcagcgtcg tcggcaaaag ccgtccgcgc gccacatccg ggctgttgca
     3001 cacttcgacc gcttccgaca aaatcctctc cggcgatacc ttgcgccaaa aagccgtcaa
     3061 cttgggcgat gctttggacg gcgtgccggg cattcacgcc tcgcaatacg gcggcggcgc
     3121 gtccgctccc gttattcgcg gtcaaacagg caggcggatt aaagtgttga accatcacgg
     3181 cgaaacgggc gatatggcgg atttttcgcc cgatcacgcc attatggtag ataccgcctt
     3241 gtcgcaacag gtcgaaatcc tgcgcgggcc ggttacgctc ttgtacagct cgggcaatgt
     3301 ggcggggctg gtcgatgttg ccgatggcaa aatccccgaa aaaatgcctg aaaacggcgt
     3361 atcgggcgaa ctcggattgc gtttgagcag cggcaatctg gaaaaactca cgtccggcgg
     3421 catcaatatc ggtttgggca aaaactttgt attgcacacg gaagggctgt accgcaaatc
     3481 gggggattac gccgtaccgc gttaccgcaa tctgaaacgc ctgcccgaca gccacgccga
     3541 ttcgcaaacg gtcagcatcg ggctgtcttg ggttggcgaa aaaggtttta tcggcgtagc
     3601 gtacagcgac cgtcgcgacc aatatggtct gcctgcccac agccacgaat acgatgattg
     3661 ccacgccgac atcatctggc aaaagagctt gattaacaaa cgctatttac agctttatcc
     3721 gcacctgttg accgaagaag acatcgatta cgacaatccg ggcttgagct gcggcttcca
     3781 cgacgacgat gatgcacacg cacacaccca cagcggcaga ccgtggatag acctgcgcaa
     3841 caaacgctac gaactccgtg ccgaatggaa gcaaccgttc cccggttttg aagccctgcg
     3901 cgtacacctg aaccgcaacg actaccgcca cgacgaaaaa gcaggcgatg cagtcgaaaa
     3961 cttttttaac aaccaaacgc aaaacgcccg catcgagttg cgccaccaac ccataggtcg
     4021 tctgaaaggc agctggggcg tgcaatattt acaacaaaaa tccagtgctt tatctgccat
     4081 atccgaagcg gttaaacaac cgatgctgct tgacaacaaa gtgcaacatt acagcttttt
     4141 cggtgtagaa caggcaaact gggacaactt cacgcttgaa ggcggcgtac gcgtggaaaa
     4201 acaaaaagcc tccatccgct acgacaaagc attgattgat cgggaaaact actacaacca
     4261 tcccctgccc gacctcggcg cgcaccgcca aaccgcccgc tcattcgcac tttcgggcaa
     4321 ctggtatttc acgccacaac acaaactcag cctgaccgcc tcccatcagg aacgcctgcc
     4381 gtcaacgcaa gagctgtacg cacacggcaa acacgtcgcc accaacacct ttgaagtcgg
     4441 caacaaacac ctcaacaaag agcgttccaa caatatcgaa ctcgcgctgg gctacgaagg
     4501 cgaccgctgg caatacaatc tggcactcta ccgcaaccgc ttcggcaact acatttacgc
     4561 ccaaacctta aacgacggac gcggccccaa atccatcgaa gacgacagcg aaatgaagct
     4621 cgtgcgctac aaccaatccg gtgcggactt ctacggcgca gaaggcgaaa tctacttcaa
     4681 accgacaccg cgctaccgca tcggcgtttc cggcgactat gtacgaggcc gtctgaaaaa
     4741 cctgccgtcc ctacccggca gggaagatgc ctacggcaac cgtcctttca tcgcacagga
     4801 cgaccaaaat gcccctcgcg ttccggctgc gcgcctcggc gtccacctga aagcctcgct
     4861 gaccgaccgc atcgatgcca atttagacta ctaccgcgtg ttcgcccaaa acaaactcgc
     4921 ccgctacgaa acacgcacgc ccggacacca tatgctcaac ctcggcgcaa actaccgccg
     4981 caatacgcgc tatggcgagt ggaattggta cgtcaaagcc gacaacctgc tcaaccaatc
     5041 cgtttacgcc cacagcagct ttctctctga tacgccgcaa atgggccgca gctttaccgg
     5101 cggcgtgaac gtgaagtttt aaaatcggac aggcaaacaa aaaaggtttt cagacggcat
     5161 tctgaaaacc ttttttcttt ttaatcaatt tgttaggaaa tatggcaaag acaaagaaca
     5221 aaccactatg ccatcattcc cattttcttt gtttcatcat tcttgctttc acgccgtcat
     5281 tctcgcaaaa gcagaaaaat caaaagcaga aacccatcat tcccgcgcag gcgagaatcc
     5341 aattcattcg gtttcagccg tttccgataa atcgccttag catttgggtt ttagattccc
     5401 actttcgtgg gaatgacggc gtaaaggttt ctgtttttta agttttaggt aactaataag
     5461 tcgtcattcc cgcgcaggcg ggaatccaat tc
//
LOCUS       DAXIFS010000122         5410 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.122, whole genome shotgun sequence.
ACCESSION   DAXIFS010000122 DAXIFS010000000
VERSION     DAXIFS010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.122"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(120..2954)
                     /gene="lbpA"
                     /locus_tag="ACFOCA_001492"
                     /gene_synonym="tbpA"
     CDS             complement(120..2954)
                     /gene="lbpA"
                     /locus_tag="ACFOCA_001492"
                     /gene_synonym="tbpA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin-binding protein LbpA"
                     /protein_id="HFC6988195.1"
                     /translation="MNKKHGFPLTLTALAIATAFPAYAAQAGGATPDAAQTQSLKEVT
                     VRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYS
                     IRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAG
                     SSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSKDGW
                     EGLLIRTERQGRETRPHGDIADGVAYGINRLDAFRQTYDIQSKDTPGQFFSVEGERES
                     KPVAKLAGNGNYLKNQLNRWVEERKKNNQPLNAEEEAMVREAQARHENLSAQAYTGGG
                     RILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDESKKF
                     SDKSGVYDGNDFRDGLYFRPNIEEWKGDTNLVKGIGLKYSRTKFIDEHHRRRRMGLLY
                     RYENEAYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSS
                     DRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAISRPEQLSHNAARISEST
                     GFDDKNQDKYLLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYF
                     DFSLGGRYDRQNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSVSYRASSGFRTPSFQ
                     ELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVAD
                     QKTKLPDSTGRLTEIDIRDYYNAQNMSLQGVNILGKIDWNGVYGKLPEGLYTTLAYNR
                     IKPKSVSNRPGLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELA
                     YLAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAE
                     STANRHGGDSNYGRYAAPGRNFSLALEMKF"
     gene            complement(2951..5134)
                     /locus_tag="ACFOCA_001493"
     CDS             complement(2951..5134)
                     /locus_tag="ACFOCA_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6988196.1"
                     /translation="MCKPNYGGIVLLPLLLASCIGGNFGVQPVVESTPTAYPVTFKSK
                     DVPTPPPAKPSIETTPVNRPAVGAAMRLLRRNIATSDKDGNDFPNSKQAEEKLSFKEE
                     DILFLYGSKKDQRQQLEDKIHQLNPNVQIRTSKNENKKYGYKFVDAGYVYTKDGKDEI
                     EWTSNYKQSTNRFGYDGFVYYSGEHPSQSLPSAGTVKYSGNWQYMTDAIRHRTGKAGD
                     PSEDLGYIVYYGQNVGATSYAATADDREGKHPAEYTVNFDQKTLNGKLIKNQYVQKRD
                     DPKKPLTIYDITAKLDGNRFTGSAKVNTEVKTNHADKEYLFFHTDADQRLEGGFFGDN
                     GEELAGRFISNDNSVFGVFAGKQKTEAANAADTKPALPSEKHTKILDSLKISVDEAAD
                     KNARPFAVSPMPDFGHPDKLLVEGREISLVKDTQTIDLADGRKMTVSACCDFLTYVKL
                     GRIKTDRPAAKPKAQDEEEDEEDTGVDNGEEGEDEIGDEEGTEDEAVEDEGDEDEVSE
                     EEADEAEEESPAEEGGGGSDGIPPVPEASRGRDIDLFLKGIRTAEADIPKTGTAHYTG
                     TWEARIGKPIQWDNHADKAAKAEFDVDFGKKSISGTLTEKNGVQPAFHIKNGKIEGNG
                     FYATARTRENGINLSGNGSTNPKTFQASDLRVEGGFYGPQAAELGGTIFNKDGKSLDI
                     TENIENEVEIEADAEADAGEQLKPEVKPQFGVVFGAKKDMQEVEK"
BASE COUNT         1154 a         1444 c         1261 g         1551 t
ORIGIN      
        1 tgcgcgggaa tgacggcgga aatcttgttt atatcgaatc aaaaaaacct gcaccttaat
       61 cagttggcgg tttagtccga cttttggggt gcagatcaag ctttcagacg gtatttcctt
      121 taaaacttca tttcgagcgc gagactgaag ttcctgcccg gtgcggcata ccttccatag
      181 ttgctgtcgc cgccgtgccg gtttgccgtg ctttccgcgg tctggcgcaa ggattcccaa
      241 gtaacgtagc ggtagttgcc gatattgtag atagccgccc tcaaggtcag ccgttttttc
      301 agattcagat aggcggaaac gtctgccgtc gaccaagaag acgacgctct ttttgtcgaa
      361 tatcgttttt gatcgcctgc cagataagca agctcgtcag ggtttttccc tttggaatag
      421 gtcagcataa tgtttgcgcc ccatttcccc tcgggctggt cgtatccgaa ccccaaaaca
      481 taacgcgacg gctgtaccgc atccaaagca tagctgcgga gagacagtcc cggccggttg
      541 gataccgatt tcggtttgat acggttgtac gccaaagtcg tgtacaaacc ttcgggcagt
      601 ttgccgtaca caccgttcca gtcgattttt cccaatatat taacgccttg gagcgacata
      661 ttttgggcat tgtaataatc gcgtatatca atctctgtca atcgtcctgt tgaatccggc
      721 aatttggttt tttgatcggc aacggcaatc atatcggtat agcggttgcg gaagctgctg
      781 atttccaaaa agccgaaatc gcccttccac tgcaaaccga tttcgcggtt ggctgccttt
      841 tccgatttca gggcgggacg ctgccagcct ttcggataat cgtgataaat gtctatcccg
      901 aaaagttctt ggaatgaggg cgttctgaag ccgctggagg cgcggtaaga cacggaaaaa
      961 tgccggttcg gtttgaacac gatgccgctg ttccacgaac ggtcaacata ccgcccgctg
     1021 cggacgagtt cttccgacgt ggtgaagttt tgccggtcgt acctgccgcc caagctgaaa
     1081 tcaaaatatt tgccgattga aaaacggtcg ttcaaagaaa tgtggatatt gctgccgttg
     1141 atttttcttg gcacgcattt gcgggaacgc aaagtttcga tgtagccgca gaccgaccct
     1201 tcgacgactt cgggcttacc caaaagatac ttatcttgat ttttatcatc gaatcccgtg
     1261 gattccgaaa tccttgccgc attgtgagaa agctgttcgg ggcgggagat cgctttggaa
     1321 gcatcgtaac cgaagcccaa agtcagatgg tgtttcgtcc atttgttttt cagcgacttc
     1381 tcaaacgagg cattcaaaac attgtgctgt tcgcggtagt ggaaacggtc gctgctgtcg
     1441 taggaatacg gtttgtccgc cgacgcgcgg caggatttgt ccacagcagg atacacggcg
     1501 caattcagct tcagtgtgtt gttgtcggtt gccacgccct gtttgtcaaa cgacaacacc
     1561 gccttatccg cccaattgtc agaatacgct tcgttttcat aacggtacag caaacccata
     1621 cggcggcggc ggtgatgttc gtcaataaat ttggtgcggg aatatttcaa acctatgccc
     1681 ttgaccaaat ttgtatcgcc cttccactct tctatattcg gcctaaaata caagccgtcg
     1741 cggaaatcgt tgccgtcgta caccccgctc ttgtcgctaa actttttcga ctcgtccgta
     1801 ccgtaatact gtttttccgt catatcgcgg atgtcgtaac gctgtttggt atcctcaaac
     1861 acgccgccga cataatgcct gccgccgaag cggtagccca gcttggcaag ccacgaaccg
     1921 ctgcggtaat ccatcggatc gggcaatatc ctgccgccgc ccgtgtaagc ttgggcggac
     1981 aggttttcgt ggcgcgcctg cgcctcccgc accatcgctt cttcttcagc atttaaaggc
     2041 tgattgtttt tcttacgttc ttccacccaa cggttgagct ggtttttcaa atagtttccg
     2101 ttgcccgcca attttgccac gggcttggat tcacgctcgc cctctactga gaaaaattgc
     2161 cctggtgtat ctttgctttg aatatcgtat gtctggcgga acgcgtccaa acggtttatg
     2221 ccgtatgcca ccccgtccgc aatatcgccg tgcgggcgcg tttcccgccc ttggcgttcg
     2281 gttcggatta gcagcccttc ccaaccgtct ttgctgaacc ccgcgccgag cgacttcata
     2341 aattggcggt ttttactgcc gtaggcagtt tttgcctgta tcccccagct tttgccgtct
     2401 gaaatcaggt ctgccgcctc tttggtgcgg aaagcgaccg cgccgccgag tgcgccgctg
     2461 ccgtgatcgg acgaaccggc acctttgtcg atttccaccg tgctgatgtt ttcatattcg
     2521 atttcgttga ttgcaccgct gccgccgcgt ccgccgtatc cgctcaacga tccctgcacg
     2581 gtaaacgcct gtatttgggc aacgccgtca accgaaaccg ccacacggtt tttatccacg
     2641 ccgcgtatcg agtagccgcc gctcgcaccg ttgccctgtt cgacaaccgc cacgcccgga
     2701 tcgtagcgcg tcaggtcgcg gataccgagt acctgttctt tgttcaacgt ttccgacgtt
     2761 ttgacgattt tgcccaaacc ggtcgcctct ttcgatcgcc gtcccacttt ggcggcacgg
     2821 acggtaacct ctttcaggga ttgggtctgc gcggcatcag gtgtcgcccc ccccgcttgg
     2881 gcagcataag ccggaaaagc ggttgcaatg gccaaggcgg tcaaagtcag cggaaaaccg
     2941 tgtttcttat tcatttttcc acctcctgca tatctttttt cgcaccgaat accacgccga
     3001 attgaggttt aacttcaggt tttaactgtt cgccagcatc agcttcagca tcagcttcaa
     3061 tttcaacttc attttcaata ttttcagtta tatcaagaga tttcccatcc ttattgaaaa
     3121 tagtgccgcc taattctgcc gcctgcgggc cgtaaaatcc tccttctaca cgaagatcac
     3181 tagcttggaa ggttttgggg ttggtcgaac catttcccga aagattgatg ccgttctccc
     3241 gagtgcgtgc tgttgcgtag aaaccgttgc cctcaatctt gccgttttta atatggaaag
     3301 caggttgtac accgtttttc tccgtcagcg ttccggaaat cgatttcttg ccgaaatcaa
     3361 catcaaactc tgcttttgcc gctttatccg catgattgtc ccattgaatg ggtttgccga
     3421 tacgcgcctc ccaagtgccg gtataatgcg ccgttccggt ttttggaatg tcggcttccg
     3481 ccgtgcggat gccttttaaa aataggtcga tgtccctgcc tctagaggct tccgggacag
     3541 gcgggatgcc gtctgaaccg ccgccgcctt cttctgccgg cgattcttct tcggcttcat
     3601 cagcttcttc ttcggaaact tcgtcttcgt cgccttcatc ttctacggct tcatcttccg
     3661 tgccttcttc atcgccgatt tcgtcttcgc cttcttcacc gttatcaacg cctgtatcct
     3721 cttcgtcctc ctcttcatcc tgcgccttcg gtttggcggc cgggcggtcg gtttttatcc
     3781 gtccgagttt cacatacgtc agaaaatcgc aacaagcact gacggtcatt ttcctgccgt
     3841 cggcaagatc gatggtttga gtatctttga ccaaggagat ttcacgccct tcgacaagga
     3901 gtttgtcagg atgaccaaaa tcgggcatag gggaaaccgc aaacgggcgc gcatttttat
     3961 ccgccgcctc gtcaacggaa attttcagag aatccaagat tttggtgtgt ttttcagacg
     4021 gcagtgcggg ttttgtatct gctgcgtttg ccgcctctgt tttttgtttg ccggcgaata
     4081 cgccgaatac gctgttgtcg ttgctgataa accgtccggc aagctcttct ccgttatcgc
     4141 cgaaaaaacc gccctcaagc cgctgatcgg catcggtatg gaaaaacaaa tattctttat
     4201 cagcgtgatt cgtcttcacc tctgtgttaa ctttggcact gccggtaaag cggttgccgt
     4261 ccaattttgc agtaatgtcg taaatggtca gtggtttttt aggatcatct ctcttttgca
     4321 catactgatt tttaatcagc ttgccattca gagttttttg gtcgaaatta accgtatatt
     4381 cggcaggatg ttttccctcc cggtcgtcgg cagtcgcagc ataagaagtt gctccgacat
     4441 tttgaccgta ataaacgata taacccaaat cttcgctagg atctcctgct tttcctgttc
     4501 gatgacgtat ggcatcggtc atatattgcc agttgccgga atatttcacc gttcccgcgc
     4561 tcggtaaaga ttgcgaagga tgttctccgg aataatatac aaaaccgtca taaccaaacc
     4621 ggttggtaga ctgcttgtaa tttgaagtcc actcaatttc atcttttccg tctttagtat
     4681 atacataacc tgcatctaca aatttataac catatttttt attttcattt tttgatgtcc
     4741 taatttgtac attaggattg agttgatgaa ttttatcttc aagctgctga cgttgatctt
     4801 ttttggaacc gtataaaaac aggatatctt cctctttaaa cgacagcttt tcttctgctt
     4861 gtttgctatt tggaaaatca ttgccatcct tatcagaagt tgcgatattc cgcctcaaca
     4921 gccgcattgc cgcaccgacg gcgggccggt tgaccggcgt ggtttctata gaaggtttgg
     4981 cagggggcgg agtgggaacg tccttagact tgaaagtgac ggggtacgcg gtcggcgttg
     5041 attcgacaac aggctgcacg ccgaaattgc cgccgataca agatgccaaa agtaagggca
     5101 acaagacaat gccgccataa ttcggtttac acatccctac ttttcctcct atttgattaa
     5161 taataattat cattatatta atatgtacag ataatatcaa cccgttttta tagtgaatta
     5221 acaaaaatca ggacaaggcg acgagccgca gacagtacag atacattccg tcattcccac
     5281 gaacctacat tccgtcattc ccacgaacct gcaccacgtc attcccacga aagtgggaat
     5341 ccagttcgtt cggtttcgct tgttttaagt ttcgggtaac ttctacttcg tcattcccac
     5401 gaacctgcat
//
LOCUS       DAXIFS010000123         5392 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.123, whole genome shotgun sequence.
ACCESSION   DAXIFS010000123 DAXIFS010000000
VERSION     DAXIFS010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.123"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(117..272)
                     /gene="rpmG"
                     /locus_tag="ACFOCA_001494"
     CDS             complement(117..272)
                     /gene="rpmG"
                     /locus_tag="ACFOCA_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009766925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFC6988197.1"
                     /translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
                     YKETKLK"
     gene            complement(304..537)
                     /gene="rpmB"
                     /locus_tag="ACFOCA_001495"
     CDS             complement(304..537)
                     /gene="rpmB"
                     /locus_tag="ACFOCA_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFC6988198.1"
                     /translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
                     RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
     gene            complement(787..2313)
                     /gene="farB"
                     /locus_tag="ACFOCA_001496"
     CDS             complement(787..2313)
                     /gene="farB"
                     /locus_tag="ACFOCA_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     permease subunit FarB"
                     /protein_id="HFC6988199.1"
                     /translation="MDYPPLKGAALAWVTLSLGLAVFMEVLDTTIANVAVPVIAGNLG
                     AATTQGTWVITSFAVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
                     SLVVFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
                     SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
                     LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
                     SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
                     LVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGAGVAMFFLPLTTITLSHMKGGQ
                     IAAAGSLSNFLRVLMGGVGVSVVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
                     HGVSDIQTLGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHNGGGGGH
                     "
     gene            complement(2337..3509)
                     /gene="farA"
                     /locus_tag="ACFOCA_001497"
     CDS             complement(2337..3509)
                     /gene="farA"
                     /locus_tag="ACFOCA_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     adaptor subunit FarA"
                     /protein_id="HFC6988200.1"
                     /translation="MATHGDEVKIQNRQEADSAKAKRKRCLTALTLLFALAAAAAGSA
                     FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVL
                     AYERAKNELIQAVRQNRRQNAATSQAGAQVALRRADLARAQDDLRRRSALAESGAVSA
                     EELAHARAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQ
                     RTQIRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPA
                     ELVSDLYGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDV
                     DRHPLRIGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
     regulatory      3738..3782
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            3786..4259
                     /gene="queF"
                     /locus_tag="ACFOCA_001498"
     CDS             3786..4259
                     /gene="queF"
                     /locus_tag="ACFOCA_001498"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFC6988201.1"
                     /translation="MSRNTEELQGISLLGNQKTRYPTGYAPEILEAFDNKHPDNDYFV
                     KFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
                     IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFETLARKRLFEHDSQ"
     gene            4334..5020
                     /locus_tag="ACFOCA_001499"
     CDS             4334..5020
                     /locus_tag="ACFOCA_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HFC6988202.1"
                     /translation="MYAFTAAQQQKALFWLVLFHILIIAASNYLVQFPFQIFGIHTTW
                     GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALS
                     EFNTFVGRIALASFAAYALGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
                     VAFYASSDEFMAANWQGIAFVDYLFKLTVCGLFFLPAYGVILNLLTKKLTTLQTKQAQ
                     DRPAPSLQNP"
BASE COUNT         1314 a         1541 c         1281 g         1256 t
ORIGIN      
        1 tccttggcag acggtttgca gcagattcgc atacagcaga tgtttcaagc ggaaaagaaa
       61 cacgataaaa ataaaaaagc ctccgaacag tcggaggctt tgctttcaaa ctgaaattat
      121 ttcagtttgg tttctttgta cactacgtgt ttgcgggcaa ccggatcgaa ttttttgatt
      181 tccagtttgc cgggcatagt gcgtttgttt ttggtagtgg tgtagaagtg accagtacct
      241 gcactggatt ccagtttgat tttatcgcgc attgcagtaa tccttaatta aatagtgttt
      301 aaattaagct tcgccgcgag cacgcaaatc agccaatacg acatcaatgc ctactttgtc
      361 gatggtacgc agtgcagcgt tggaaacgcg caggcgaacc cagcggtttt cactttctac
      421 ccaaaaacga cgtgattgca agttgggcaa aaaacggcgt ttggttttgt tgttggcgtg
      481 cgatacgttg ttgccggaca tcgggcgttt gccggtcact ttgcaaactc gtgccataat
      541 cagtctccaa acttctaaaa tagtaaaacg cgatttatac cacgaaaaac agtgttagtt
      601 caagtgtttt agagaaaaac ggctgttttg cgcggataat ccttccgatt gtcgcatctg
      661 tggaacgttt gcaggtgcga aacagatggg gcgcgattat agcggatttc gggaactgct
      721 gcattcaaaa tgccgtccga acatatttcc agtattttca gacggcattt caagttttca
      781 aatccctcaa tgtccaccgc cgccgccgtt gtggaacggc ggttttgcca gccatatgac
      841 gggtatcatg ataatgaata acaagctgcc cgccataaag atttcgttcg agccgataat
      901 aaaaccctgc tgggtaatgg tattgttgat gatgcctagg gtttgaatgt cggaaacgcc
      961 gtgctgggac aaatgagcgg ccgtttcgtg caatgttgcg gaatagggcg tgatgtgttc
     1021 ggcaaagcgt gtatggtgca acgcttcgcg ccgttcccac agggtgctga cgacggatac
     1081 gccgacaccg cccatcagca cgcgcaagaa attcgacagg ctgcctgcgg cggcaatctg
     1141 tccgcccttc atgtgcgaca gtgtgatggt ggtcagcggc aggaagaaca tggcaacgcc
     1201 tgccccctgc caaaactgcg gccagatgac gttgccgata tccatgtcgg cataaaaatc
     1261 ggtgcgccaa tagaaagtaa aggcaaaggt caggaagctg gcggttacga gcaggcgcat
     1321 atcgatttta ttgccgaacc tgccgattaa cggagacagg aagacgggca ggatgccgac
     1381 gggtgcggcg gcaagccccg cccacgtgga ggtatagccc aggttggtct gcaacactaa
     1441 cggcagcaag gtcagcgtcc ccatatacac cataaaaccc aatgatgtgg caattacgcc
     1501 gacggtaaaa ttccgatctt taaacagcga taaatcgaca atcggatatt tttctcccaa
     1561 ttcccaaaca ataaaatacg acaaacacac cagtgcgact acgcccaagg taatgatttc
     1621 tccagaggcg aaccagtcga gttccttacc cctgtccagc atcatctgta acgcgccgat
     1681 accgactacc atcaatgtaa gcccgacata gtcggtcggc attttaacgg tttccgtttc
     1741 ccgatatttc aaatgtttcc atgtaatcca tgccgatatg ataccgatag ggatattaat
     1801 gaagaaaatc caaccccaat gccagtttcc ggaaatccaa ccgccgagta tcggcccgag
     1861 aacaggggcg acaacgacgg tcattgccca caatgccagt gccagcgtcc gttttgcggg
     1921 cggataggat gccattaaca ggctttgcga caggggaatc agcggcccgg cgataaagcc
     1981 ctgcaagatg cggaaaacaa ccagcgactg aaggttgggg gcaataccgc acagccacga
     2041 tgtgatgacg aaaccgacag cggcggcggt aaacaatttg acctcgccga tacgttttgc
     2101 caaaaagccc gttaacggca cggaaacggc gtttgccaca gcaaaagaag taatgaccca
     2161 cgtcccctgc gtggttgccg caccgaggtt gccggcgatg acgggaacgg cgacattggc
     2221 gatagtcgta tctaaaactt ccataaatac ggcaagcccc aaagacagcg taacccacgc
     2281 caatgccgca cccttaagcg gtggataatc cattgtgtcc tccgtttcag acggcatcag
     2341 ggcgcggatt gcccgaggat ttcatcgacc gtccgatcga cttccgacca gtcggtactt
     2401 tccatttccg gcaatgccgc acccggcgtt tttgaaacag gcgcgcctgc ggcggaagta
     2461 tccactttaa ccgtcatcga caaaccgata cgcaacggat gcctgtccac atcttcgcgg
     2521 ttcagcacga tacggacggg gacgcgctgc accactttaa tccagttgcc cgttgcgttt
     2581 tgcgccggaa tcagcgaaaa cgcgctgccc gtacctgccg aaaaacctgc caccctgccg
     2641 cgataaacaa tttgtttgcc gtacaaatcg gacaccagct cggcaggctg tccgattttc
     2701 atatgccgca actgcgtctc tttaaaatta gcatccaccc acacatccga cagcggcacc
     2761 accgccatca gcggcgcgcc tgccgccacc tgctgcccga cctgcaccga acgcttcgcc
     2821 acctgaccgt ccgccggcgc gcggatttgc gtccgctgaa ggttcaacca cgcatctttc
     2881 aacctgccga ttgccgtctg aaccgccggc tgttcgcgca aagaaacctg accgcccaaa
     2941 gccgcacgcg ccgaagattc ttccgccaaa gccgccttaa ctgccgcctg agcctgagac
     3001 actgccgcac gggcatgtgc cagctcttcg gcggacaccg cgcccgattc cgccaaagca
     3061 gaccggcggc gcaaatcatc ctgcgcgcgt gccaaatccg cccggcgcaa ggcaacctgc
     3121 gcccccgcct gcgaagtggc ggcattttgc cggcggtttt gccgcaccgc ctgaatcagc
     3181 tcgttttttg cccgctcgta agccagcaca tcattatcgt cgtccaatac cgccagcacg
     3241 tcgccttttt tcacggcatc cgtatcgtcg tgcaaaacct tccgcaccgt accgcccttt
     3301 tgcggcgtaa cctgaaccac gcgtccggca acataagcgt cttccgtttc ctcttcgtgc
     3361 tgccaccata aaaaaaacgc cgacccggcg gctgcggcgg caagcgcgaa cagcagcgtc
     3421 aatgccgtca ggcagcgttt gcgtttggct tttgcgctat cggcttcttg tctgttttga
     3481 attttcactt cgtctccgtg tgttgccatt attccaattc cgaatatttt taatacgata
     3541 taaataaagc cgatcaaagg cagctcggat tctataccct ggcaataacc caatcaagtt
     3601 aatgatttag aatgaatatt caaataaacc gccacacccg cgttccgcaa aattaattta
     3661 tgttcaaaaa taatcggata agcgcgccgt accgggcggg gacgctacac agataccgcc
     3721 gcttatatta caatcgtcgc cccgtggttc gaaaacctcc cacactaaaa aactaaggaa
     3781 accctatgtc ccgcaatacc gaagagctgc aaggcatctc gcttttgggt aatcaaaaaa
     3841 cccgatatcc gaccggctac gcgcctgaaa ttctcgaagc attcgacaac aaacatcccg
     3901 acaacgacta tttcgtcaaa ttcgtctgcc cagagttcac cagcctctgc cccatgaccg
     3961 ggcagcccga cttcgccacc atctacatcc gctacattcc gcacatcaaa atggtggaaa
     4021 gcaaatccct gaaactctac ctcttcagct tccgcaacca cggcgatttt catgaagact
     4081 gcgtcaacat catcatgaaa gacctcattg ccctgatgga tccgaaatac atcgaagtat
     4141 tcggcgagtt cacaccgcgc ggcggcatcg ccattcatcc tttcgccaat tacggcaaag
     4201 caggcaccga gttcgaaaca ttggcgcgta aacgcttgtt cgaacacgac agccaataaa
     4261 ccatccttcc catatttcag acggcattcc ttcgatacga tatgccgtct gaacgccttt
     4321 ccgaaagatt tttatgtacg catttactgc cgcacagcaa cagaaggcac tcttctggct
     4381 ggtgcttttc catatcctca tcatcgccgc cagcaactat ctggtgcagt tccccttcca
     4441 aattttcggc atccacacca cttggggtgc gttttccttt cccttcatct tcctcgccac
     4501 cgacctgacc gtccgcattt tcggttcgca cttggcacgg cggattatct tttgggtgat
     4561 gttccccgcc cttttgcttt cctacgtctt ttccgttttg ttccacaacg gcagttggac
     4621 aggcttgggc gcactatccg aattcaacac ctttgtcgga cgcatcgcct tggccagctt
     4681 tgccgcctac gcgctcggac aaatccttga tatttttgtg ttcaacaaat tacgtcgtct
     4741 gaaagcgtgg tggattgcac cgaccgcatc aaccgtcatc ggcaatgcac tggacacgtt
     4801 agtgtttttt gccgttgcct tttacgccag cagcgatgaa tttatggcgg caaactggca
     4861 gggcatcgct tttgtcgatt acctgttcaa acttaccgtc tgcggtctgt ttttcctgcc
     4921 cgcctacggc gtgattctga atctgctgac gaaaaaactg acaaccctgc aaaccaaaca
     4981 ggcgcaagac cgccccgcgc cctcgctgca aaatccgtaa aacagccctg ccgggaatcg
     5041 ggacggttgg gttttctttt atttgcaaac actgtcggaa cggataaatc cggattcccg
     5101 cccacttcgt cattcccgcg aaagcgggaa tccggtacgt tgggtttcag tcatttccga
     5161 taaactccta ccgcattgta tttctagatt cccgctttcg cgggaatgac ggcggatggg
     5221 tttccgtgcc gtggtgtccg gattcccgac ggtacgggaa tgacggcagt gcttccttaa
     5281 cttagtttta ttttaatcga ctgtatggtg gattaacaaa aatcaggaca aagcgacgaa
     5341 gccgcagaca gtacaaatag tacgaaaccg attcacttgg tgcttcagca tc
//
LOCUS       DAXIFS010000124         5360 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.124, whole genome shotgun sequence.
ACCESSION   DAXIFS010000124 DAXIFS010000000
VERSION     DAXIFS010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5360
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.124"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(363..608)
                     /locus_tag="ACFOCA_001500"
     CDS             complement(363..608)
                     /locus_tag="ACFOCA_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988203.1"
                     /translation="MLKSIELNSHIRNRLAAYLKGRGMDFQTAMREEKGNKEIASIVH
                     SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
     gene            720..1148
                     /locus_tag="ACFOCA_001501"
     CDS             720..1148
                     /locus_tag="ACFOCA_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HFC6988204.1"
                     /translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDAPRGNPEYV
                     RLSGMAVRLYRFMSPLGFGAVVFGSAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
                     LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
     gene            1160..1636
                     /locus_tag="ACFOCA_001502"
     CDS             1160..1636
                     /locus_tag="ACFOCA_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HFC6988205.1"
                     /translation="MPIEIERRFLIGNDNWRQYADEPLLLKQAYLSVEKERTVRVRIV
                     GQQAWLTLKGYISELSRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
                     VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
     gene            complement(1986..2474)
                     /locus_tag="ACFOCA_001503"
     CDS             complement(1986..2474)
                     /locus_tag="ACFOCA_001503"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HFC6988206.1"
                     /translation="MLKLTLIAACAENLCIGAGNAMPWHIPEDFAFFKAYTLGKPVIM
                     GRKTWESLHVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
                     IYGQAMPLATDLRITEVDLSVEGDAFFPAIDRTHWKEAERTERRVSSKGTSYAFVHYL
                     RY"
     gene            complement(2542..3597)
                     /gene="aroG"
                     /locus_tag="ACFOCA_001504"
     CDS             complement(2542..3597)
                     /gene="aroG"
                     /locus_tag="ACFOCA_001504"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HFC6988207.1"
                     /translation="MTHHYPTDDIKIKEVKELLPPIAHLYELPISKEASGLVHRTRQE
                     ISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRT
                     TVGWKGLINDPHLDGTFDINFGLRQARSLLLSLNNMGMPASTEFLDMITPQYYADLIS
                     WGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAG
                     HSAIVHTGGNPDCHVILRGGKEPNYDAGHVSEAAEQLRAAGVTDKLMIDCSHANSRKD
                     YTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEE
                     LLALLAGANKKRMARAG"
     gene            complement(3759..3986)
                     /locus_tag="ACFOCA_001505"
     CDS             complement(3759..3986)
                     /locus_tag="ACFOCA_001505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988208.1"
                     /translation="MGNTRIPIKSFFKQLVLFVFNIFLAYEILPDVQAESAAGCSVPD
                     CRGNGKTDVPCGFVRMNGGYCFYQSVSFSLE"
     gene            4213..4521
                     /locus_tag="ACFOCA_001506"
     CDS             4213..4521
                     /locus_tag="ACFOCA_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988209.1"
                     /translation="MTPWADAYADLRGKTKVMTTQMCASRDVSKSAKGWSVGIGLNVG
                     KQLTDSVGLEFDPYYRHKTICKPREIVLDGDKTKMGRSKSNEYGFRVTATFYSQLKSK
                     "
     gene            complement(4570..4674)
                     /locus_tag="ACFOCA_001507"
                     /pseudo
     CDS             complement(4570..4674)
                     /locus_tag="ACFOCA_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            5275..5360
                     /locus_tag="ACFOCA_001508"
                     /pseudo
     CDS             5275..5360
                     /locus_tag="ACFOCA_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
BASE COUNT         1318 a         1388 c         1203 g         1451 t
ORIGIN      
        1 ataacgggat tttggatgat gtgcattttc gggaaaacta aaaaccctcc gccgtcattc
       61 ccgcgaaagt gggaatctag aattttaatg cggcaaaaat ttatcggaaa aaaccgaagt
      121 ttaaagacct agattcccgc ctgcgcggga atgacggttt agaaatcacc cgaaacgaga
      181 aaaagaaccg aaaccgaaca agccggatta ccgcctgcgc gggaatgacg gctcaaaagt
      241 tacgaaacga aaaataaccg aaaccaaaca agtcggattc ccgcgcgggc gggaatgacg
      301 ataagcataa tttcaatctg ccatattgtc ttttcacttg cctgaaaaca gatttcagcc
      361 gcctatccct gcatccggcg gctgatgtag tcggcaatca aatcccgctt ttcccaaaaa
      421 aacttctgca ttttttgttc ggaatacagt ttgcggacca gagtgggcag accgctgtgg
      481 acgatggagg cgatttcttt gttgcctttt tcctcccgca tcgccgtctg aaaatccata
      541 cccctgcctt tcagatatgc tgcaaggcgg ttgcggatgt gggaattgag ttcgatggat
      601 ttgagcattt tgcctccgtt ttgcggtaag gatttatttg atttgtttat ccgcctgatt
      661 ttatcacgtt tcccaagcgg tttgcctgta caataccgct tttcggcagg gtgtgggcga
      721 tgatgttttc ttggttcaag ctgtttcact tgttttttgt catttcgtgg tttgcagggc
      781 tgttttacct gccgaggatt ttcgtcaata tggcgatgat tgatgcgccg cgcggcaatc
      841 ccgagtatgt gcgcctgtcg ggtatggcgg tgcggctgta ccgttttatg tcgccgttgg
      901 gcttcggcgc ggtcgtgttc ggctcggcga taccgtttgc cgccggttgg tggggcagcg
      961 gttgggtaca tgtcaaactg tgtttggggt tgatgctctt ggcttaccag ttgtattgcg
     1021 gcgtgctgct gcgccgtttt caggattaca gcaatgcttt ttcacaccgc tggtaccgcg
     1081 tgttcaacga aatccccgtg ctgctgatgg ttgccgcgct gtatctggtc gtgttcaaac
     1141 cgttttgacg gagcatctta tgccgataga aatcgaacgc cgttttttga ttggaaacga
     1201 caactggcgg caatacgccg acgaaccgct gctcttgaaa caggcttatc tttctgtcga
     1261 gaaagaacgt accgtccgtg tccgtattgt cggacaacag gcgtggctga cactgaaagg
     1321 ctatatttca gaactcagcc gcagtgagtt tgaatacgaa atcccgcttg ccgatgcgga
     1381 aaagatgatg gaaacgatgt gtccgtttaa gatggaaaaa tggcgttatc cggtcagatg
     1441 gggcggcagc ctgtttgaaa tcgatgtttt tcttggcgat aatgcgcctt tggtcgtcgc
     1501 ggaaatcgag ttgcccgacg agaatgccga ttttgaccgt ccggactggc tgggacggga
     1561 aatcactgcc gacggtatgt ttaccaatgc ctatttgagc aggcatccgt tctcaagctg
     1621 gaaaaatgcc gtctgaaacg gcttcagacg gcattctccg acaaccatcg caaatccaaa
     1681 gacagcctct atatccttat ttctgctttc tttgttccat tattcccaat aaatccccat
     1741 aacctaaaat ctcgtcattc ccgcgcaggc gggaatccgg ttctttaaac ttcggttttt
     1801 tccgataaat tgctttagct tttcgtttcc ggattcccgc ttttgcggga atgacgatgg
     1861 aagattgttg ttatttcgga taaattaccc taactttaaa atcccggatt cccatcttcg
     1921 ggggaataac aatattttct atttcagccc atcatttgcg ggggatttta tagagagttt
     1981 atatttcaat atctcaaata atgcacaaaa gcatagctcg tgcctttgct gctgacacgg
     2041 cgttccgtcc gctctgcttc tttccaatgc gtccggtcta ttgcggggaa aaatgcatct
     2101 ccttccacag acaaatccac ttcggttatc cgcaaatcgg tcgccaatgg catcgcttgt
     2161 ccgtatatct gcgcgccgcc cataatgacg gcttcttccg cgcctgcgca caatgccaat
     2221 gccgcctcca aacttgccgc cgtttccgcg cctgccgcgc aataatccgc ctgccggctg
     2281 atgacgatgt tcctccgtcc gggcaggggt ttgacgtgca gggattccca cgttttccgc
     2341 cccataatga cgggtttgcc caaggtatag gctttgaaaa atgcgaaatc ttcggggatg
     2401 tgccaaggca tcgcattgcc cgccccgatg cacaggtttt ccgcacacgc cgcaattagg
     2461 gttaatttga gcatatttcc tccacaaaaa tgccgtctga acgcttcaga cggcatttta
     2521 tgacattccg tgtcaaaaat ctcaaccggc gcgcgccata cgttttttgt ttgcacctgc
     2581 caacaatgcc aacagttctt cagtcgcgcc ccaaccgata cacgcatcgg taatgctttt
     2641 gccgtacact tccggcttgt cctgcctgcc ttcgaccaaa tggctttcca ccatcacgcc
     2701 catgatattg ccgccgtcct gttccaattg ggcggcaata tcttgtgcca cttccatctg
     2761 ccgggtgtaa tccttgcggc tgttggcgtg gctgcaatct atcatcagct tgtcggttac
     2821 ccctgccgca cgcagttgtt ccgccgcctc gctgacgtgt cccgcatcat aattcggctc
     2881 ttttccgccg cgcaaaatga catgacagtc aggattgccg ccggtatgga caatggcgga
     2941 atgcccggcc ttggttacag acaggaaatg atgcgaatgg ctcgccgcac cgattgcgtc
     3001 gatggcaatc ttcaaattgc cgtccgtacc gtttttaaag ccgacggggc aggacagccc
     3061 gcttgccaat tcgcggtgaa cttggctttc ggtcgtccgc gcaccgattg ccccccaaga
     3121 aatcaagtcc gcataatatt gcggcgtaat catatccaaa aactcggtag aggcaggcat
     3181 acccatattg ttcagcgaca acaacaggct gcgcgcctga cgcaaaccga aattgatgtc
     3241 aaacgtaccg tccaaatgcg ggtcgttaat caaacctttc caacccaccg tcgtcctcgg
     3301 cttctcgaaa taaacgcgca tcacaatcaa aagctcgttt tcatactgct tgcggagttt
     3361 caacaaacgc tccgcatatt ccaacgccgc tttcggatcg tgaatcgaac acggcccgat
     3421 aataaccaac agccgcttgt ccctgccgtg aaccaaatcg gaaatttcct gacgggtgcg
     3481 gtgaaccaag cccgaagcct ctttggaaat cggcagctcg taaagatggg caatcggcgg
     3541 caacaactct ttaacttctt taatcttaat atcgtctgtg gggtaatggt gtgtcatctt
     3601 gcatctttcc tgatggtttt ttatacgcgg cttaggttac atcgtttacc ttgcacaaac
     3661 aagtgcaaca tattactaca aagctatttt atttcaaaat aactgatata tcttttttca
     3721 tagattttaa atttcatatt tttaatattt taggaatttt attccaaaga aaaagaaaca
     3781 gattgataaa aacaataccc gccattcatt cggacaaaac cgcacggaac atccgttttc
     3841 ccatttccac gacaatccgg tacagaacac cccgctgccg attccgcctg cacatccggc
     3901 aaaatttcat acgcaaggaa aatgttgaaa acaaaaagaa ctaattgctt gaaaaaagat
     3961 ttaattggaa tgcgggtatt tcccacactt tctccattta ttcatcctca ttataggaag
     4021 aaaaacatga aaaaaccctg cttgcactct cacttgcagc cgtgtccgcc gttacggtag
     4081 ccgatattcc tgagtctaac ggcaagggca aagccatcat cggcgataag gaaaaacacc
     4141 gttaccaagc atgaaaacct tgttttgaaa gtctatggcg aaatccgcca agatttgggg
     4201 gacggatgat ccctgacccc ttgggcggat gcatatgcag atttgcgcgg caaaaccaaa
     4261 gtgatgacga cccagatgtg tgcttcccgc gatgtcagca aaagcgccaa aggttggagt
     4321 gtcggtatcg gtctgaatgt aggcaaacag ttgaccgaca gcgtcggtct cgagtttgat
     4381 ccatactacc gtcacaaaac aatctgcaaa ccccgtgaga ttgttttgga cggcgacaaa
     4441 accaaaatgg gccgctccaa atccaacgag tacggcttcc gcgtaaccgc aacgttctat
     4501 agtcaattaa aatcaaagta ggacagtagt gcatcgtcaa atcgggcgta atcagacaaa
     4561 acggtttgca gatgcagaac gggcggtaac ttccagtaca aaaaacggag cagttctttc
     4621 tgtacttttt tctttaattt gcagtgtgtt atcttcatat ttcgagggta acatatctgc
     4681 taatctagta cagcccctag tttaaagctt tgtttcttaa gtccgcagag tatgccatgg
     4741 ttagaccttc aaagttgagt attgtactat tttgttttta attaactata aaacgcttgt
     4801 gtgaatagga agactgcaga atattgctgc cttttcctgt ttgctttaaa taaacagaaa
     4861 atgccgtctg aaaccgattt tcagacggca tttgtccctt aaaacacgtt ttttcaagcg
     4921 cgaccatacc aaacacccac aggttgcctt ccacccttcg tacaaccttt gctccatcaa
     4981 acatccactt cctaaatact gatgtctgct taggttgaat cggcattcgt acgattacgg
     5041 cacaccgcct aatctgtacc tgcgtctgtt gcgcccaata ccaaagacta cctgaaaatc
     5101 tcccaaactt ttcaggtagc cttatcacgt tttcgactgt taccacacgc ccaaagaccg
     5161 cctgaaaccc tttttcagac gttccgctcc gatacccccc caacaaaacg ccgcccgaac
     5221 gcatgttcag acggcatttt ctttgcgtcg attcattccc cgatatagcg caggtctttt
     5281 tccagccatt tcccttccaa acaaaaaagc accgacggcg gccgatgccc cttcctttac
     5341 aggttcccct attttttagc
//
LOCUS       DAXIFS010000125         5335 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.125, whole genome shotgun sequence.
ACCESSION   DAXIFS010000125 DAXIFS010000000
VERSION     DAXIFS010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5335
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.125"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(592..3318)
                     /locus_tag="ACFOCA_001509"
     CDS             complement(592..3318)
                     /locus_tag="ACFOCA_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HFC6988210.1"
                     /translation="MQQQHLFRLNILCLSLMTALPVYAENVQAEQAQEKQLDTIQVKA
                     KKQKTRRDNEVTGLGKLVKSSDTLSKEQVLNIRDLTRYDPGIAVVEQGRGASSGYSIR
                     GMDKNRVSLTVDGVSQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSS
                     EYGNGALAGSVAFQTKTAADIIGEGKQWGIQSKTAYSGKDHALTQSLALAGRSGGAEA
                     LLIYTKRRGREIHAHKDAGKGVQSFNRLVLDEDKKEGGSQYRYFIVEEECHNGYAACK
                     NKLKEDASVKDERKTVSTQDYTGSNRLLANPLEYGSQSWLFRPGWHLDNRHYVGAVLE
                     RTQQTFDTRDMTVPAYFTSEDYVPGSLKGLGKYSGDNKAERLFVQGEGSTLQGIGYGT
                     GVFYDERHTKNRYGVEYVYHNADKDTWADYARLSYDRQGIDLDNRLQQTHCSHDGSDK
                     NCRPDGNKPYSFYKSDRMIYEESRNLFQAVFKKAFDTAKIRHNLSINLGYDRFKSQLS
                     HSDYYLQNAVQAYDLITPKKPPFPNGSKDNPYRVSIGKTTVNTSPICRFGNNTYTDCT
                     PRNIGGNGYYAAVQDNVRLGRWADVGAGIRYDYRSTHSEDKSVSTGTHRNLSWNAGVV
                     LKPFTWMDLTYRASTGFRLPSFAEMYGWRAGESLKTLDLKPEKSFNREAGIVFKGDFG
                     NLEASYFNNAYRDLIAFGYETRTQNGQTSASGDPGYRNAQNARIAGINILGKIDWHGV
                     WGGLPDGLYSTLAYNRIKVKDADIRADRTFVTSYLFDAVQPSRYVLGLGYDHPDGIWG
                     INTMFTYSKAKSVDELLGSQALLNGNANAKKAASRRTRPWYVTDVSGYYNIKKHLTLR
                     AGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMKF"
     gene            complement(3405..5204)
                     /locus_tag="ACFOCA_001510"
     CDS             complement(3405..5204)
                     /locus_tag="ACFOCA_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6988211.1"
                     /translation="MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVETVQDMHSKPK
                     YEDEKSQPESQQDVSENSGAAYGFAVKLPRRNAHFNPKYKEKHKPLGSMDWKKLQRGE
                     PNSFSERDELEKKRGSSELIESKWEDGQSRVVGYTNFTYVRSGYVYLNKNNIDIKNNI
                     VLFGPDGYLYYKGKEPSKELPSEKITYKGTWDYVTDAMEKQRFEGLGSAAGGDKSGAL
                     SALEEGVLRNQAEASSGHTDFGMTSEFEVDFSDKTIKGTLYRNNRITQNNSENKQIKT
                     TRYTIQATLHGNRFKGKALAADKGATNGSHPFISDSDSLEGGFYGPKGEELAGKFLSN
                     DNKVAAVFGAKQKDKKDGENAAGPATETVIDAYRITGEEFKKEQIDSFGDVKKLLVDG
                     VELSLLPSEGNKAAFQHEIEQNGVKATVCCSNLDYMSFGKLSKENKDDMFLQGVRTPV
                     SDVAARTEANAKYRGTWYGYIANGTSWSGEASNQEGGNRAEFDVDFSTKKISGTLTAK
                     DRTSPAFTITAMIKDNGFSGVAKTGENGFALDPQNTGNSHYTHIEATVSGGFYGKNAI
                     EMGGSFSFPGNAPEGKQEKASVVFGAKRQQLVQ"
BASE COUNT         1249 a         1354 c         1179 g         1553 t
ORIGIN      
        1 tcaccgcatc aaaggttttt gggaatacgg cggtttcggt tttcggtggg aatgggcgga
       61 atggataaca ttgacggagt tgggggaata ggtggaaacg gtgggattgg tgggctgaag
      121 cccaccctac agccagccct atgtccacgc tgcacatcct acgcccgcct tgcgtttctt
      181 ataagcagca ttttacgcaa tactttgcgt ccgctgaaaa aatttcaaac ggtctttttt
      241 atcaaatgcg aaaaatataa cgtcattccc gcgcaggcgg gaatctagtc tgtcggtgcg
      301 gaaacttatc ggataaaacg gtttctttag attttacgcc ctagattccc gcctgcgcgg
      361 gaatgacggg atttgaggtt tctgtttttg attttccgcc ttcgcgggaa tgacggttta
      421 gaagttaccc gaaacctcaa aaaaaaccga aaccgaacgg tctggattcc cgcctgcgcg
      481 ggaatgacgg gtttcgagat tacggtgtat cggggatgat gggaaacggt gggaattgtg
      541 taaaaaatgc cgtctgaagc ctttcagacg gcatttgcgg cgtttggacg tttaaaactt
      601 catttccaag ctaaatgtgt agtttcggcc gggggcggca tatcggttgt aaacgccgac
      661 atttttgtgt tggttgactg cgccgccggc agtttgccgc acattttccc aagtaacata
      721 gcggtagttg aggaggttgt acacacctgc gcgcagggtc aggtgtttct tgatattgta
      781 atatccggaa acatccgtaa cataccaagg ccgcgtccgc cgtgatgctg cttttttagc
      841 attggcatta ccgttcaaca gcgcctggct gccgagcagt tcgtcaacag attttgcctt
      901 ggaataagta aacatcgtat tgatgcccca tattccgtca ggatggtcgt aacccaaacc
      961 caatacatat cgtgaaggtt ggacggcatc aaagagatat gaagttacaa acgtcctgtc
     1021 ggcgcgtata tcggcatctt tgaccttgat acggttatag gcaagcgtgg aatacaaccc
     1081 gtccggcaac ccgccccata cgccgtgcca atcgatttta cccaaaatat tgataccggc
     1141 tatccgtgca ttttgggcat ttcggtatcc ggggtcgcca gaagccgaag tttgcccgtt
     1201 ttgagttcgg gtttcataac cgaatgcaat caggtcgcga taggcattgt tgaaatagct
     1261 ggcttccaaa ttgccgaagt cccctttaaa tacaatacct gcctctctat taaaggattt
     1321 ttccggtttc agatccaacg ttttcaaaga ctccccggct ctccagccat acatttcggc
     1381 aaacgacggc agacggaagc ccgtagaagc gcgataagtc aaatccatcc aggtgaaagg
     1441 tttgaggact acgcccgcgt tccaagaaag gttgcggtga gtgccggtag agacactctt
     1501 atcttccgaa tgcgtgctgc ggtaatcgta acgtatgcct gctccgacat ccgcccacct
     1561 gcccaaacgg acattgtctt gaacggctgc ataataaccg ttgccgccga tattcctcgg
     1621 tgtgcagtct gtataggtgt tattgccgaa acggcatatc ggcgatgtat tgaccgtggt
     1681 cttgccgata gacaccctat acgggttgtc tttgcttccg ttgggaaacg gaggcttttt
     1741 cggggttatc aaatcatatg cctgaactgc gttttgaaga taataatcgc tgtgggacaa
     1801 ttgcgactta aagcggtcgt accctagatt gatactcaaa ttgtgacgga ttttggccgt
     1861 atcaaatgcc tttttaaata ctgcttggaa caggtttcgg ctttcttcat aaatcatccg
     1921 gtcggattta tagaaagaat acggtttatt gccgtcggga cggcaatttt tatccgaacc
     1981 gtcgtgagag caatgcgtct gctgcaaacg gttgtccaaa tctatacctt gccggtcata
     2041 agaaagtcgg gcgtaatcgg cccaggtatc cttatcagca ttatggtaaa catattcgac
     2101 cccgtagcgg tttttagtat ggcgttcatc ataaaacacg ccggtaccgt aaccgatacc
     2161 ctgcaatgta ctgccctctc cctgaacaaa cagcctttct gccttattat cgcccgaata
     2221 tttgccaaga cctttcagcg aaccgggtac ataatcttca ctggtaaaat aggcaggaac
     2281 agtcatatcc cgtgtatcaa aggtctgctg cgtacgttcg agaacggctc cgacataatg
     2341 gcggttgtcc aaatgccaac ccggtcggaa cagccatgat tggctgccat actcaagcgg
     2401 gttcgcaagt aagcggttgg agccggtata atcctgcgtg ctgacggttt tgcgctcatc
     2461 tttgaccgag gcatcttctt tcagcttgtt tttacaggcc gcatatccat tgtggcattc
     2521 ttcttcgaca atgaaatatc tgtactgact gccaccctcc ttcttgtcct cgtccaacac
     2581 cagccggttg aagctctgca cacccttgcc ggcatcttta tgcgcatgga tttcccgacc
     2641 ccgccgttta gtataaataa ggagggcttc cgcgccgccg ctgcgtccgg caagcgcaag
     2701 ggattgcgtc agggcatggt cttttcccga ataggcagtt ttactctgaa tgccccactg
     2761 ttttccctct ccgataatgt cggctgcggt tttggtttga aatgcgaccg aacctgccaa
     2821 tgcgccgttt ccgtattctg atgaattcga acccttgctg atttcaacgg ccttgacgtt
     2881 ttcatactcg atttcattga ttgcgccgct gctacccgcc gtcctcgtcc cacccaatgc
     2941 cgcctgcgcg gtgtaggact gtatttgcga aacgccgtct accgttaagg aaacgcggtt
     3001 tttatccatg ccgcgtattg aatagccgga acttgcgccc cgaccctgtt cgaccacggc
     3061 aatacccgga tcataacggg tcaggtctcg gatattcaaa acctgttctt tacttagcgt
     3121 atcggaagac ttgaccaact tgcccagccc ggttacttcg ttatcgcggc gggttttctg
     3181 ttttttggct tttacctgta tggtatccaa ctgtttttcc tgtgcttgtt cggcttgcac
     3241 attttctgca taaacgggca gcgcggtcat taaagacagg cataaaatat ttaatcggaa
     3301 caaatgttgc tgttgcatag tgtttcccta atcttcgctt tcagacggca tcggaaggaa
     3361 cggtgccgtc tgaagcctta ttctcgattg ttcggcagcc gtgcttattg cacaagctgt
     3421 tggcgtttcg caccgaatac caccgatgct ttttcttgtt ttccctctgg tgcatttccc
     3481 ggaaatgaga acgatccgcc catctcgatg gcgtttttgc cgtagaaacc gccggataca
     3541 gtggcttcaa tatgcgtata gtgggaattt ccggtatttt gcggatccag cgcaaagccg
     3601 ttttcaccgg ttttcgccac acctgaaaaa ccgttgtcct taatcatggc agtaatagta
     3661 aacgcaggag acgtacggtc ttttgccgtc agtgtgccac tgattttttt agtggaaaaa
     3721 tccacgtcaa actctgccct attaccacct tcctgattgg aggcttcgcc gctccagctt
     3781 gtgccgttgg caatatatcc gtaccaagta ccgcgatatt tggcgtttgc ctccgtcctt
     3841 gccgccacat cggatactgg agtgcggaca ccttgcagga acatatcgtc tttattttct
     3901 tttgacagct tcccaaaact catgtaatcc aagttggaac aacacaccgt tgccttcacg
     3961 ccgttttgct caatctcgtg ctgaaatgcc gccttattgc cctcagacgg cagcagtgaa
     4021 agctccactc cgtcaaccag cagctttttc acatctccaa aactgtctat ttgctctttc
     4081 ttaaactcct cgccggtaat acggtatgca tctatcacgg tttccgttgc aggccctgcc
     4141 gcgttttccc catccttctt atctttctgc ttcgcaccaa acaccgctgc aactttgttg
     4201 tcgttgctca agaatttacc ggcaagttcc tcgcctttcg gcccgtaaaa tccgccttcc
     4261 aaactgtcgg agtcggaaat aaagggatga cttccatttg ttgcaccttt atctgccgcc
     4321 aacgccttac ctttgaaacg gttgccgtga agagttgctt gaatggtgta acgcgtagtt
     4381 tttatttgtt tgttttcact attattttga gtaatacggt tgttacgata aagtgtgccc
     4441 tttattgttt tatcagaaaa atcaacctca aactcactag tcataccaaa atcggtatga
     4501 ccggatgatg cctctgcctg attacgcaat accccttctt ctaatgcaga caacgccccc
     4561 gatttatctc ctcctgctgc actacccaat ccttcaaacc tttgtttttc catagcatca
     4621 gtaacataat cccaagtacc tttataagtt atcttttccg atggcagctc cttggaaggt
     4681 tctttccctt tatagtaaag atatccgtca ggtccaaaaa gaactatatt attcttaata
     4741 tcaatattat ttttattaag gtaaacatat cccgaacgga cataagtgaa atttgtataa
     4801 ccaactacac gactttgccc atcttcccat tttgattcaa taagttcaga actaccccgt
     4861 tttttttcca attcatccct ctcactaaaa ctatttggtt ctcctctttg cagttttttc
     4921 caatccattg aacccaatgg tttgtgcttt tccttatatt taggattaaa atgtgcattc
     4981 cggcgaggta gttttactgc aaagccataa gccgcgccgc tgttttccga tacatcctgt
     5041 tggctttcag gctggctttt ttcatcctca tacttaggtt tggagtgcat atcttgcacg
     5101 gtttccacgc tgtccaaatc gaaactgccg ccgccaccca gacaagcact caacaaaaac
     5161 acaggcagca ccatagcagc ctgatttacc aatggattgt tcatataaac ccaattcaat
     5221 taaagaatga taaggattat tattttattt atttttaaca aatttgcaaa tactttttta
     5281 tttttttagg gaatacacca aaatcccgtc attcccgcgc agtcgtgaat ccgaa
//
LOCUS       DAXIFS010000126         5321 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.126, whole genome shotgun sequence.
ACCESSION   DAXIFS010000126 DAXIFS010000000
VERSION     DAXIFS010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5321
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.126"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            295..1728
                     /locus_tag="ACFOCA_001511"
     CDS             295..1728
                     /locus_tag="ACFOCA_001511"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HFC6988212.1"
                     /translation="MNEYSQLIKHPDISLSPISDSIGIGNPATGEILAYVRNTGSDKL
                     KNLIQKAAAAQKLWAAKTALERADILWRWYFLVKENKEALARLMTMEQGKSLTEARGE
                     IDYAASFVRWFAEEARRIDGDVLTSVKASQKLVVLKQPVGVTAAITPWNFPSAMIARK
                     AAPALAVGCAMIVKPASLTPLSAYALASLAYEAGIPQDLLPVVSGSASEIGHEFATNP
                     IIRKISFTGSTEVGAKIFADSAADIKKLSLELGGNAPFIVFDDADLDKAVEGALASKF
                     RNSGQTCVCTNRVYAQSAIYDEFCRKLSEKAAALKLGNGLEDGVNQGPLIEEKAVEKV
                     EQHIADALAKGASCLTGGKRSALGGTFFEPTVLSGVTAQMAVAREETFGPLCPVFRFE
                     TEAEVIEAANNTEYGLAAYLFTADTARQWRVGEALEYGMVGINTGLISNEAAPFGGVK
                     RSGLGREGSKYGADEYLELKYLCMDVG"
     gene            1837..2625
                     /locus_tag="ACFOCA_001512"
     CDS             1837..2625
                     /locus_tag="ACFOCA_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimb protein"
                     /protein_id="HFC6988213.1"
                     /translation="MMENGKTVPRWRFALKSAGWHLLISLSVAGLAALLVFKVWYPYP
                     YAELTGGLSLYQLVVAVDIVCGPLLTLILASPKKKTKARMVDFSMVGIIQLAALVYGL
                     HSVSLARPVVEAFEQDRMTIVTAAEVVVEDLHKAPEGLQSLSWFGIRRIALKEPEDAD
                     EKNKTLDLSLKGIEPSMRPDQWLPYSDKEAEEIRKHLKPLKVLADARKTTVADILKQA
                     GLAEGEELYYLPFTSSRQKEWIVITDKEGNTKGYAPIDGFIITP"
     gene            2993..4549
                     /locus_tag="ACFOCA_001513"
     CDS             2993..4549
                     /locus_tag="ACFOCA_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HFC6988214.1"
                     /translation="MDFSWLAEPHTWIGFATLLVLEVVLGIDNLVFVAILANKVQPAR
                     RDRARIIGLGLAVVIRIIMLAFMAHIITLTEPLFQIGGLAVSGKDMIMLAGGIFLLYK
                     ATTELHERLEGHNRFTVADNQKKHAPFWGVVAQILIPDAVFSIDSVITAVAMVDHIVV
                     AMGAVVVAMAVMISASKLLTEFVDRHPTVVMLCLGFLLMIGFSLIAEAFHFHIPKGYL
                     YAAIGFSILIELFNQISQRNSRKNDYIGSSWRKRTAENVLGMMGIRESVLADAGGESG
                     DDAHFEENEKSMIRSVLTLAERPIMGVMIPRRDIERLDISQSREEQCAQLQNTPYSRL
                     LVVGKAGVDEPLGYINKKDLLSQLLETGGLDIQTALRQPLVLPDSTTALGAIELFRQS
                     SADYALVVDEFGAVLGMVTMKDLLETIAGEFPEEFEREEEPAVQGNPDESLTVEGALE
                     YVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE
                     RVKITKLPEE"
     gene            4566..5312
                     /gene="surE"
                     /locus_tag="ACFOCA_001514"
     CDS             4566..5312
                     /gene="surE"
                     /locus_tag="ACFOCA_001514"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFC6988215.1"
                     /translation="MNVLISNDDGYLSEGIAVLARVTAEFANVRVVAPERDRSGVSNS
                     LTLERPLQLKQAQNGFYYVNGTPTDCIHIGQSVFSDFQADFVFSGINRGANMGDDTLY
                     SGTVAAATEAYLMGIPAVAFSLNDASGRYWATAEKALWTLLAHFFKNPPQSPILWNIN
                     IPAVEPEDVRGIKIARLGRRHHGQNVIPARNPRGEQIYWIGPVGRVSDKEEGTDFGEC
                     GAGFITVTPLQIDLTAYPDMAETAAFWHAD"
BASE COUNT         1248 a         1343 c         1515 g         1215 t
ORIGIN      
        1 gtttggattt ttgccatact ctaccacacg ttgcaactgc aatctttgtt ccttatatat
       61 tatcaaaggg ctgcattact tttctttcta aattaccatt gtataaaaag tatttttctt
      121 aaacgacagg gattgcgccc gcgccatatt cagacaccgc ccggatgttg cactgcccga
      181 tcggatgctt cagacggcat cggaagggtt tgcagttttg gaatatgaag atgataatgt
      241 ccgcgagatt gacggcattt gaaagcggtt attccgcata ccggaggata cgaaatgaac
      301 gaatattccc aattaatcaa gcatcccgat atttcccttt ccccgatttc agacagcatc
      361 gggatcggca atccggcgac gggtgaaatt ttggcgtatg tccgcaacac gggttcggac
      421 aaactgaaaa acctgattca aaaggcggcg gcagcgcaaa aattatgggc ggcgaaaact
      481 gctttggaac gcgccgacat attgtggcgt tggtattttt tagttaaaga aaacaaagaa
      541 gcactggcgc gcctgatgac gatggagcag ggcaaaagcc tgaccgaggc gcgcggcgag
      601 attgattatg cggcttcgtt tgtgcgctgg tttgcggaag aggcgcggcg gattgacggc
      661 gatgtgttaa cgagtgtaaa agcgtcgcaa aaactggttg tgttgaaaca gcctgtcggc
      721 gttaccgccg cgattacgcc gtggaacttc ccatctgcga tgattgcgcg caaggccgcg
      781 cctgctttgg cggtgggttg cgcgatgatc gtcaaacccg catcgctcac gcctttgagt
      841 gcgtatgcct tggcttcgtt ggcttacgaa gcgggcatac cgcaggattt gttgcctgtt
      901 gtcagcggca gtgcttcgga aatcggccat gaatttgcta cgaacccgat tatccgcaaa
      961 atcagcttca ccggctcgac cgaagtcggc gcaaaaattt ttgccgacag cgcggcggac
     1021 attaaaaaac tcagtttgga gctgggcggc aacgcgccgt ttatcgtgtt tgacgatgcc
     1081 gatttggaca aagccgtcga aggcgcgctc gccagcaagt tccgtaacag cggtcagacc
     1141 tgcgtctgca ccaaccgcgt ttacgctcaa tccgccattt acgacgaatt ttgccgcaaa
     1201 ttgagtgaaa aagcagccgc gctcaaattg ggcaacggct tggaggatgg tgtgaaccaa
     1261 gggccgctga ttgaggaaaa agcggtggag aaagtcgagc agcacatcgc cgacgcgctt
     1321 gctaaaggtg caagctgcct gaccggcggc aaacgcagcg cgttgggcgg aacgtttttc
     1381 gaaccgactg ttttaagcgg cgtaacggcg caaatggcgg tggcacgcga agaaaccttc
     1441 gggccgttgt gtccggtatt ccgttttgaa accgaagccg aggtcatcga ggctgcgaac
     1501 aatacggaat acggtttggc agcttacctt ttcaccgccg acaccgcccg ccaatggcgc
     1561 gtcggcgaag ccttggaata cggtatggtc ggcatcaata cgggcttaat cagcaatgaa
     1621 gcggcaccgt tcggcggcgt gaaacgtagc ggtttgggac gtgaaggcag caaatacggt
     1681 gcggacgaat atctagaatt gaaatatctg tgtatggatg tcgggtgacg gatgccgtct
     1741 gaacggcagg atttcagacg gcgccgcatt ttaagcagtc tctatctgtt gtacaatgcg
     1801 ccctgttttt acggttattt ttgatttgaa caagatatga tggaaaacgg aaaaacagtc
     1861 ccgagatggc gttttgcctt gaaaagtgcg ggctggcacc tcttaatcag cctgtcggtt
     1921 gcagggctgg cggcattgct ggtttttaag gtttggtatc cttatcctta tgccgagctg
     1981 acgggagggc tgtcgcttta tcagctggtg gtggctgtcg atattgtatg tggtccgctg
     2041 ctgactttaa ttttggcaag cccgaagaaa aagacaaagg cacgcatggt cgatttttcc
     2101 atggtcggca tcatccagct ggcggctttg gtgtacggtc tgcacagcgt ttcgctggcg
     2161 cgtcctgtgg tggaagcgtt tgaacaggat cgtatgacca ttgttacggc ggcggaagtc
     2221 gtggtcgaag atttgcacaa agcccccgaa gggctgcaaa gcctgtcgtg gttcggcatc
     2281 cgccgcattg cattgaaaga acctgaggat gcggatgaga agaacaagac gctggatttg
     2341 tccctgaaag gtatcgagcc gagtatgcgt cccgaccagt ggctgccgta ttccgacaag
     2401 gaagcagaag aaatccgcaa acatctgaaa ccgctgaaag tcttggcgga tgcgagaaaa
     2461 acgacggttg cggacattct gaaacaggca ggtctcgccg aaggggagga gctgtattac
     2521 ctgccgttta ccagcagcag gcagaaagag tggatagtca ttaccgataa agagggcaac
     2581 accaaaggct acgcgccgat agacggcttc atcatcaccc cttaagcgtt gggactccgt
     2641 ccgcactcga acatccgttc ttcgcggcgg tagaatcaga ctgtatttga gaggggcgca
     2701 acccctcaat cagggcaaca cataggggaa ggctttatgt gccgtccgtg tgttgaaaca
     2761 tttcaaaata agctcatgcc gtccgaacat cctttcagac ggtatggcat tttgccattg
     2821 ccccgataag ctgttaaact atttaaatta tttcgaccga aggtacacgc acatgcaaga
     2881 ccccgagcag agcagcaagc ccgcccgccg ttttttgtgc gtaccgtctg ttcaggcagc
     2941 ttgagcgctt caggctgcct tttcgcgttt gaacttgagg aatacgaaaa tcatggattt
     3001 cagttggttg gcagaaccgc atacctggat aggttttgcc acgcttttgg tgttggaagt
     3061 tgtattgggg atagacaatc ttgtctttgt ggcgattttg gcaaacaagg tccagcccgc
     3121 acggcgcgac cgcgcacgga ttatcgggct ggggctggca gtcgtcatcc gcatcattat
     3181 gcttgctttt atggcgcaca tcatcacgct gaccgagccg ctgttccaaa tcggcggcct
     3241 cgccgtttcc ggcaaggaca tgattatgct cgcgggcggt attttcctgc tttacaaagc
     3301 caccaccgaa ctgcatgaac gcctcgaagg gcacaaccgt tttaccgttg ccgacaacca
     3361 aaaaaaacac gcgccgtttt ggggcgtggt cgcgcaaatc ctgataccgg atgccgtgtt
     3421 ttccatcgat tcggtcatta ctgcggtggc gatggtcgat catatcgtcg tggcgatggg
     3481 tgcggtcgtc gtcgcgatgg ctgtaatgat ttctgccagc aaactcttga ccgaatttgt
     3541 cgacagacac cctaccgtcg tgatgctctg ccttggtttt ttgttgatga tcggtttcag
     3601 cctgattgcc gaagccttcc atttccacat tcccaaaggc tacctctacg ccgccatcgg
     3661 cttctcgatt ttaatcgaat tgtttaacca gatttcgcag cgcaacagcc gcaaaaacga
     3721 ctacatcggc agctcgtggc gcaagcgcac cgccgaaaac gtcttgggta tgatgggtat
     3781 acgcgaaagc gtgcttgccg acgcgggcgg cgaatccggg gacgacgcgc attttgaaga
     3841 aaacgaaaaa tcgatgatac gcagcgtgct gacgcttgcc gaacgcccga ttatgggggt
     3901 gatgatccca cgccgcgaca tcgaacggct ggacatttcc caaagccgcg aagaacagtg
     3961 tgcccaactg caaaacacgc cttacagccg cctgctcgtt gtcggtaagg cgggcgtgga
     4021 cgaacctttg ggctacatca acaaaaaaga cctgctgtcc caactgctgg aaacaggcgg
     4081 tctcgacatt cagacggcat tgcgccagcc actcgtcctg cccgacagca ccaccgcgct
     4141 gggcgcaatc gaactcttcc gccaaagcag cgcggattat gctttggtgg tggacgagtt
     4201 cggcgcggta ttgggcatgg taaccatgaa agacctgctc gaaaccatcg caggcgagtt
     4261 ccccgaagaa tttgagcgcg aagaagaacc agccgttcag gggaatcccg atgaaagcct
     4321 gacggtggaa ggcgcgttgg aatatgtgga actcgcaccg caactcaacc tgccgcagca
     4381 ggaggaagat gccgatttcc atacggttgc cgggctgatt atggaagaat tgcaaaccat
     4441 ccccgatgtc ggcgattttg ccgatttcca cggctggcgg tttgaagtgg tcgaaaaaga
     4501 agggcagcgc atcgagcggg tcaaaatcac caaattgccc gaagaataag cattcaggat
     4561 agaaaatgaa cgttttgatt tccaacgacg acggctacct ctccgaaggt attgccgttt
     4621 tggcgcgcgt tacggcggaa tttgccaacg tcagggtggt tgcgcccgaa cgcgacagga
     4681 gcggggtcag caattcgctg acgctggaac gccctttgca gttgaaacag gcgcaaaacg
     4741 ggttctacta tgtcaacggc acgccgaccg actgtatcca catcgggcag tctgtatttt
     4801 cggattttca ggccgatttt gtcttttcgg gcatcaaccg gggcgcgaat atgggggacg
     4861 acacgcttta ttcggggacg gttgcggcgg caaccgaagc ctaccttatg ggcatacccg
     4921 ctgtggcgtt ttccttaaac gacgcttccg gacgctattg ggcaaccgca gaaaaggcac
     4981 tgtggacatt gttggcgcat tttttcaaaa accccccgca gtcccctatt ttgtggaaca
     5041 tcaatatccc cgccgtcgag ccggaagatg tgcggggcat taaaatcgcc cgtttgggca
     5101 ggaggcatca cggtcagaac gtcatccccg cgcgcaatcc gcgcggcgaa cagatttatt
     5161 ggataggccc ggtaggcagg gtttccgaca aagaagaggg aacggatttc ggtgaatgcg
     5221 gcgcaggttt cattaccgta acgccgctgc aaatcgacct gaccgcctat ccggacatgg
     5281 cggaaacagc ggcgttctgg catgcggact gaccgtttca t
//
LOCUS       DAXIFS010000127         5309 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.127, whole genome shotgun sequence.
ACCESSION   DAXIFS010000127 DAXIFS010000000
VERSION     DAXIFS010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.127"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            556..5262
                     /gene="iga"
                     /locus_tag="ACFOCA_001515"
     CDS             556..5262
                     /gene="iga"
                     /locus_tag="ACFOCA_001515"
                     /EC_number="3.4.21.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgA-specific serine endopeptidase
                     autotransporter"
                     /protein_id="HFC6988216.1"
                     /translation="MKTKRFKINAISLSIFLAYALTPYSEAALVRDDVDYQIFRDFAE
                     NKGKFFVGATDLSVKNKQGQNIGNALSNVPMIDFSVADVNRRTLTVIDPQYAVSVKHV
                     KGDEISYYGHHNGHLDVSNDENEYRSVAQNDYEPNKNWHHGNQGRLEDYNMARLNKFV
                     TEVAPIAPTSAGGGVETYKDKNRFSEFVRVGAGTQFEYNSRYNMTELSRAYRYAIAGT
                     PYQDVNVTSNLNQEGLIGFGDNSKHHSPEKLKEVLSQNALTNYAVLGDSGSPLFAYDK
                     QEKRWVFLGAYDYWAGYQKNSWQEWNIYKKEFADKIKQRDNAGTIKGNGEHHWNITFG
                     TNSKIGSTAVRLAGNEKDANNGQNVTFEDNGTLVLDQNINQGAGGLFFKGDYTVKGIN
                     NDITWLGAGIDVTDGKKVVWQVKNPNGDRLAKIGKGTLEINGTGVNQGQLKVGDGTVI
                     LNQQADADKKVQAFSQVGIVSGRGTLVLNSSNQINPDNLYFGFRGGRLDANGNDLTFE
                     HIRNVDEGARIVNHNTSHASTITLTGKSLITNPNSLSVHSIQNDYDEDDYSYYYRPRR
                     PIPQGKDLYYKNYRYYALKSGGSVNAPMPENGVTENNDWVFMGYTQEEAKKNAMNHKN
                     NQRISGFSGFFGEENGKGHNGALNLNFNGKSAQNRFLLTGGTNLNGKISVTQGNVLLS
                     GRPTPHARDFVNKSSARKDAHFSKNNEVVFEDDWINRTFKAAEIAVNQSASFSSGRNV
                     SNITANITATDNAKVNLGYKNGDEVCVRSDYTGYVTCNTGNLSDKALNSFGATQINGN
                     VNLNQNAALVLGKAALWGQIQGQGNSRVSLNQHSKWHLTGDSQVHNLSLADSHIHLNN
                     ASDAQSANQYHTLKINHLSGNGHFHYLTHLAENLGDKVLVKESASGHYQLHVQDKTGE
                     PNQEGLNLFDASSVQDRSRLSVSLANNHVDLGALRYTIKTENGITRLYNPYAENRRRV
                     KPVPSPATNTASQAQTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAE
                     AERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEKEREAAELSAKQKVEA
                     EREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQKA
                     EAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA
                     SDYEEIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVSLQPRAAQPRAQAAAQPQ
                     AQAAAQPQAQAVAQADAVSTNTNSALSDAMASTQSILLDTGASLTRHIAQKSRADAEK
                     NSVWMSNIGYGRDYASAQYRRFSSKRTQTQIGIDRSLSENMQIGGVLTYSDSQHTFDQ
                     ASGKNTFVQANLYGKYYLNDAWYVAGDIGAGSLRSRLQTQQKANFNRTSIQTGLTLGN
                     TLKINQFEIVPSAGIRYSRLSSADYKLGNDSVKVSSMSVKTLTAGLDFAYRFKVGNLT
                     VKPLLSAAYFANYGKGGVNVGGNSFAYKADNQQKYSAGAALLYRNVTLNVNGSITKGK
                     QLEKQKSGQIKIQIRF"
BASE COUNT         1789 a         1247 c         1147 g         1126 t
ORIGIN      
        1 cattcctaca aaaacagaaa accaaaatca gaaacctaaa atcccgtcat tcccacgaaa
       61 gtgggaatcc agaatctcgg actttcagat aatctttgaa tattgctgtt gttctaaggt
      121 ctggattccc gcctgcgcgg gaatgacgaa tccatccgta cggaaacctg caccgcgtca
      181 ttcccacgaa cccacatccc gtcattacca cgaaagcggg aatctaggac gcagggttaa
      241 gaaaacctac atcccgtcat tccctcaaaa acagaaaacc aaaatcagaa acctaaaatc
      301 ccgtcattcc cgcaaaagcg ggaatccaaa aacaaaaagc cgcagaaatt taacggaaga
      361 accgaacccc gaaaatcggc ttcccgcctt cgcttgaata acagaacaaa ggaagcggaa
      421 ataaaaacat cgggattctt tttttaaatt ggcaataaaa caccaaaatt aatgattcac
      481 acaacaaaaa atagtcaaca ccgccaaacc ggcgtaaaat acaaaacatt atcaccctta
      541 aaacggtaaa accttatgaa aaccaaacgt tttaaaatta acgccatatc cttatccatc
      601 tttcttgcct atgcccttac gccatactca gaagcggcat tggtcagaga cgatgtcgat
      661 tatcaaatat tccgtgactt tgcagaaaac aaaggcaaat tttttgtcgg cgcaaccgat
      721 ttatcagtga aaaacaaaca aggtcaaaac atcggcaacg cattatccaa cgtaccgatg
      781 attgatttta gcgttgcaga tgtcaacaga cgtacattaa ccgtcatcga tccccagtat
      841 gccgtcagcg tcaaacatgt aaaaggagac gaaatctctt attacgggca tcacaatggg
      901 cacttagatg ttagcaatga tgaaaacgaa tatcgttcag ttgcacaaaa tgactacgaa
      961 ccaaataaaa attggcatca cggtaatcaa ggtcgtcttg aagactacaa catggcacgc
     1021 cttaataaat tcgtaacaga agtcgcacct attgcaccaa ccagtgcagg cggcggcgtt
     1081 gaaacctata aagataaaaa ccgtttttct gagtttgtgc gagttggagc aggtacgcaa
     1141 tttgaatata acagccgcta caatatgaca gagctttcac gagcttatcg ttatgccatt
     1201 gcaggtacgc cttatcaaga cgtgaatgtc acatcgaatc taaatcaaga aggcttgatt
     1261 ggcttcggtg ataattcaaa acatcattcc ccagaaaaac tcaaagaagt tttatctcaa
     1321 aacgcattga ctaactatgc tgtgttaggc gatagcggtt caccattatt tgcttatgat
     1381 aaacaagaaa aacgctgggt ctttttaggt gcttacgatt attgggcagg ctatcaaaaa
     1441 aactcttggc aagaatggaa tatctataaa aaagaatttg cagataaaat caaacaacgc
     1501 gataacgccg gcaccatcaa aggtaatgga gaacatcatt ggaacattac ttttggcaca
     1561 aacagcaaga ttggttctac agcggtaagg cttgccggca atgaaaagga tgcaaacaac
     1621 ggacagaatg ttacctttga agacaacggc actttggtat tggatcaaaa catcaaccaa
     1681 ggcgcgggcg gtctgttttt caaaggcgat tacacagtca aaggtataaa taatgacatc
     1741 acttggctag gtgcggggat tgatgttacc gacggcaaaa aagtcgtttg gcaagtcaaa
     1801 aatccgaatg gcgacagatt ggcaaaaatc ggcaaaggca cattagaaat aaacggcaca
     1861 ggcgttaacc aagggcaatt aaaagtcggc gacggtacgg ttattctgaa tcaacaagcc
     1921 gatgccgaca aaaaagtcca ggctttctcc caagtcggca ttgtcagcgg acgcggtaca
     1981 ttggtattaa atagttcaaa tcagattaat cccgataacc tatatttcgg tttccgtggc
     2041 ggtcgtttgg atgccaatgg caatgacttg acttttgaac acatccgcaa cgtggatgaa
     2101 ggcgcgcgca ttgtcaacca caacacaagc cacgcctcca caatcacgct aacgggtaaa
     2161 tctttaatta ccaatccgaa cagcctttcg gtacatagca tacaaaatga ctatgacgaa
     2221 gatgattata gttattacta ccgaccaagg cgcccgattc cgcaaggcaa agacctttat
     2281 tacaaaaact atcgttatta cgccctaaaa tccggcggca gcgtgaacgc accgatgccc
     2341 gagaacggtg taacagaaaa taacgactgg gtctttatgg gatatacgca agaagaagcc
     2401 aagaaaaacg cgatgaacca caaaaacaat cagcgtatta gcggttttag cggtttcttt
     2461 ggcgaagaaa acggaaaagg acataacggt gcattaaacc ttaatttcaa cggcaaaagc
     2521 gcgcaaaacc gtttcttgtt aacaggcggc actaatttaa acggaaaaat aagcgtaact
     2581 caaggcaatg tcttgttatc aggtcgtcca acaccacacg caagagattt tgtgaacaaa
     2641 tcttcagccc gaaaagacgc acatttctcc aaaaacaatg aagtcgtatt tgaagacgac
     2701 tggataaacc gcacattcaa agccgcagaa attgcggtta atcaatccgc atcattctct
     2761 tccggtagaa atgtatccaa cattaccgcc aacatcaccg cgacagacaa cgccaaagta
     2821 aatttgggtt acaaaaacgg cgatgaggtt tgcgtgcgct cggactatac cggttatgtt
     2881 acctgcaaca caggcaactt atccgataag gctttaaaca gctttggagc gacacagatt
     2941 aacggcaatg tgaatctgaa ccagaatgcg gcattggtct tgggcaaggc tgcattatgg
     3001 gggcaaattc aagggcaagg aaacagccgt gtcagcctaa accaacatag caaatggcat
     3061 ttgactggcg acagccaagt acacaatctg tcattggcgg atagccatat tcatttgaac
     3121 aatgcctccg atgcgcaaag tgcaaatcaa taccacacgc tcaaaatcaa tcatttatcc
     3181 ggtaacgggc attttcatta tctgacgcac ttggcggaaa atcttgggga taaagtgctt
     3241 gtgaaggaat ccgcatccgg tcattatcag ctccatgttc aagataaaac aggcgaaccc
     3301 aatcaggaag ggctgaatct ctttgatgca tcatccgtac aagaccgctc ccgcctttct
     3361 gtttccttgg cgaataacca tgtagattta ggcgcattgc gttatacaat caaaacagaa
     3421 aacggtatta cccgattgta caatccttat gccgagaacc gccgccgagt caaaccggtc
     3481 ccgtctcctg ccacaaacac ggcttctcaa gcacaaacgg acagtgcaca aattgccaag
     3541 cctcaaaata tcgtcgtcgc accgcctagc ccgcaggcaa atcaagccga agaagcaaaa
     3601 cgccaacaag caaaagcgga gcaagtgaag cgtcagcaag cagaagcaga gcgtaaatcg
     3661 gcagagttag caaaacaaaa agcagaagcc gaacgcgaag caagagagct ggcgacccgc
     3721 caaaaagcag aacaagaacg cagcagcgcc gaacttgcac gtcgacatga aaaagaacgc
     3781 gaagcggcag agttgtcggc aaaacaaaaa gtcgaagccg aacgtgaggc tcaagcattg
     3841 gcggtacgcc gaaaagcaga agccgaagag gcaaaacgcc aagctgcaga gcttgcacgc
     3901 caacaagaag aagcacgaaa agctgcagag ttggctgcta agcaaaaagc ggaaactgaa
     3961 cgcaaagcag cagaaattgc cgagcaaaaa gcggaagccg aacgtgaagc cgccgaactt
     4021 gccaagcaaa aggcggaaga agaaggtcgc caagcagcac aatctcaacc caaacgtcgt
     4081 aaccgcaggg ctataccacc ggaactgtca tctgatgcaa caacccgagc tttgcctagg
     4141 atagcgagaa attcaaatcc tgatgccagc gattatgaag aaatcccctt ggatgcgttg
     4201 gaagatgaag atgtatccga atcggttgac acatcagaca aacagcctca agacaatacg
     4261 gaacttcatg aaaaagttga gacagtgagt ttgcaaccaa gagccgcgca gccgcgagct
     4321 caagccgccg cgcagccgca agcccaagcc gccgcgcagc cgcaagccca agccgtcgcg
     4381 caagccgatg cagtcagcac caataccaac tcggctttat ctgacgcaat ggcaagcacg
     4441 caatctatct tgttggatac aggtgcttca ttaacacggc acattgcaca aaaatcacgt
     4501 gctgatgccg aaaaaaacag cgtttggatg tcgaacatcg gttatggccg tgattatgct
     4561 tccgcacaat atcgccggtt tagttcgaaa cgcacgcaaa cacaaatcgg cattgaccgc
     4621 agcttgtccg aaaatatgca gataggcggc gtattgactt actctgacag tcagcatact
     4681 tttgatcagg cgagcggcaa aaatactttt gtgcaagcca acctttatgg taagtattat
     4741 ttaaatgatg cttggtatgt ggccggcgat attggtgcag gcagcttgag aagccggtta
     4801 caaacacagc aaaaagcaaa ctttaaccga acaagtatcc aaaccggcct tactttgggc
     4861 aatacgctga aaatcaatca attcgagatt gtccccagtg cgggaatccg ttacagccgc
     4921 ctgtcatctg cagattacaa gttgggtaac gacagtgtta aagtaagttc tatgtcagtg
     4981 aaaacactga cggccggact ggattttgct tatcggttta aagtcggcaa ccttaccgta
     5041 aaacccttgt tatctgcagc ttactttgcc aattatggca aaggcggcgt gaatgtgggc
     5101 ggtaattcct tcgcctataa agcagataat caacagaaat attcagcagg tgccgcgtta
     5161 ctgtaccgta atgttacatt aaacgtaaat ggcagtatta caaaaggaaa acaattggaa
     5221 aaacaaaaat ccggacaaat taaaatacag attcgtttct aaaatactaa attcatagca
     5281 aaataaaatg ccgtctgaac tcaggcttc
//
LOCUS       DAXIFS010000128         5280 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.128, whole genome shotgun sequence.
ACCESSION   DAXIFS010000128 DAXIFS010000000
VERSION     DAXIFS010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5280
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.128"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            393..797
                     /locus_tag="ACFOCA_001516"
     CDS             393..797
                     /locus_tag="ACFOCA_001516"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFC6988217.1"
                     /translation="MTAQPCPICTAQDEDILLQTPKLRVIAVHNDSGSPAFCRVIWRK
                     HIAEMTDLSAAERGELMEMVYKVEAAMRQVFQPAKINLASLGNVVPHLHWHIIARFEN
                     DASFPAPIWANPVRKHGMTLPQDWTEQLKKLL"
     gene            837..2021
                     /locus_tag="ACFOCA_001517"
     CDS             837..2021
                     /locus_tag="ACFOCA_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HFC6988218.1"
                     /translation="MTEPTSRRRFLKTCTAAAGAGLLQACGTSATSVPPLPSSHSVVK
                     ARTVPLQTPRRQSSDGNLLRVVASSGFAEDTNRVNTALTRLYNAGFTVTNQQAGSRRF
                     QRFAGTDAQRVADFQEVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMREHGT
                     LFFGFSDVCAVQLALLAKGNMMSFAGPMAYSDFGKPAPGAFTMDAFIKGATQNRLTVD
                     VPYIQRADVETEGILWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLNT
                     LYLSGILKKQRAIVFGNFRMEKIRDVYDPSYDFSAVANHVSRTAKIPVLTGFPFGHIA
                     DKITFPLGAHARIRMNGNSGYSVAFEGYPTLDASALTLDTLLPPPDLPIFPESGVADI
                     SE"
     gene            complement(2084..2617)
                     /locus_tag="ACFOCA_001518"
     CDS             complement(2084..2617)
                     /locus_tag="ACFOCA_001518"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HFC6988219.1"
                     /translation="MGIYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQYEAL
                     QKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANT
                     APLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERF
                     APSVTPEEIEADIRALL"
     gene            complement(2796..5051)
                     /locus_tag="ACFOCA_001519"
                     /pseudo
     CDS             complement(2796..5051)
                     /locus_tag="ACFOCA_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582176.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
BASE COUNT         1344 a         1452 c         1301 g         1183 t
ORIGIN      
        1 gtcattcccg cgaaagcggg aatctaaaaa cccaacgctg caagatttat cagaaacaac
       61 tgaaaccgaa cggactggat tcccgcctgc gcgggaatga cgggatttta gtaaccgtag
      121 caaccgcctg cgcgacggct aaggggcttc agcaaccgta gcaactgcct gtgtgggaat
      181 gacggacaat gggcttcaga cggcatctct tgcctgccgc taaaacagtt tgccgcacaa
      241 ctgttcaaac gcgtccgata tgtttcaaca cacaggacga cacatagagc accgccctat
      301 gaagtggtac aattaacggc aatgcggaca gacagattga aatattaaaa attaccctac
      361 cgttttttaa acactttcag gaataaggaa aaatgaccgc ccaaccctgc cccatctgca
      421 cggcacaaga tgaagatatt ttgctgcaaa cccccaagct gcgcgtcatc gccgtccata
      481 acgacagcgg ttcgcctgca ttctgccgcg tcatttggcg taagcatatt gccgaaatga
      541 ccgacctttc ggcagcggaa cgcggcgaat tgatggaaat ggtgtacaaa gtcgaagccg
      601 ctatgcgcca agtgtttcaa cctgccaaga ttaacctcgc cagcttgggc aatgtcgtgc
      661 cgcacctgca ttggcatatt atcgcccgct ttgaaaacga tgcgtccttc cctgcgccga
      721 tttgggcaaa ccccgtccga aaacacggta tgaccctgcc gcaagattgg acggaacagc
      781 ttaaaaagct gctttaagcc cgccgatgcc gtctgaaacc gtatgaaagg gaaattatga
      841 ccgaaccgac ctcccgccgt cgttttctga aaacctgcac cgccgccgcc ggcgcgggac
      901 tgcttcaggc ttgcggcaca tccgccacat ccgttccgcc ccttccctct tcccattctg
      961 ttgtgaaagc ccgaaccgtg cctctccaaa cgccacgccg tcaaagttcg gacggcaacc
     1021 ttctgcgcgt tgtcgcttcg tcaggctttg ccgaagacac caaccgcgtc aacacagcct
     1081 taacccgcct ttacaatgcc ggttttaccg taaccaacca acaggcgggc agccgccgct
     1141 tccaacggtt tgctggtacg gacgcacaac gtgtcgccga tttccaagag gtcgcttccg
     1201 gccgcgtcgc cacgcctaaa gtgctgatgg gcttgcgcgg cggttacggt gcggcgcgga
     1261 ttctgccgca tatcgatttt gcttcgctcg gcgcaaggat gcgcgaacac ggcacgctgt
     1321 ttttcggatt cagcgacgta tgcgccgtcc agctggcatt gttggcaaaa ggcaatatga
     1381 tgagttttgc cggcccgatg gcttatagcg attttggcaa acccgccccc ggtgcgttta
     1441 cgatggatgc ctttatcaag ggtgcaaccc aaaaccgcct gaccgttgat gttccttata
     1501 tccaacgcgc cgatgtcgaa accgaaggca tattgtgggg cggcaactta agcgtcctcg
     1561 cctcgctcgc cggcacgcct tatatgcccg acatcgacgg cggcattttg ttcctcgaag
     1621 atgtcggcga acagccctac cgcatcgaac gtatgctcaa tacgctgtat ctttcgggta
     1681 ttttgaagaa acagcgcgcc atcgtgttcg gcaatttccg tatggaaaaa attcgagatg
     1741 tctatgatcc gtcttatgat ttttccgccg ttgccaacca tgtttcgcgc acggcgaaaa
     1801 tccccgtgct gacgggcttt cccttcgggc acattgccga caaaatcact ttccctctgg
     1861 gcgcgcacgc ccgaatccgt atgaacggaa acagcggtta ttcggtcgcg tttgaaggct
     1921 accccacact cgatgcgtcc gccctgactt tggataccct gctcccaccg ccggatttgc
     1981 ccatcttccc cgaaagcggt gttgccgata tttcggaata aacccgcaaa cggacaaatg
     2041 ccgtctgaag ccttcagacg gcatttccca agacggcggc agattacagc aatgcccgaa
     2101 tatcggcttc gatttcttcg ggcgtaacac taggcgcaaa acgctcgacc acttcgccgt
     2161 cgcggttgac gaggaatttg gtaaagttcc atttgatgtc gccttcgtcg cgcttctctc
     2221 ccaaagctgc gagcttcaac acgaaatctt taaacagatg attgccttta tcttgcggtt
     2281 tgacggattt caggtaggca tacaagggcg cggtatttgc tccattgact tcgattttgt
     2341 cgaaaatctt aaacttcgtg ccaaacttca tcatacacac ttgggcaatt tctccgctgc
     2401 tttcgggagc ctgttcgcgg aactggttgc acggaaaatc caaaatctcc aagccttctg
     2461 cggtatattg tgcatacagc ttctgcaaag cctcgtattg cggggtcaga ccgcaacgcg
     2521 ttgccgtgtt gacaatcagc agaaccttgc cgcgatagcc tgacaaatca accgcattgc
     2581 cttccgcatc tttcatttga aaatcgtaaa tacccatttt tatccttatc tgatgtaaac
     2641 cgatgccatc tgaaacgtgc ttcagacggc atgaaagcag caattgtata gccgattaaa
     2701 ataaaaaatc cacatccttt tccattcccg tcccaatccg caataaaaaa ctgcacccga
     2761 aaacgggtgc agttgctcat ttcataccgc aaaacttatt tgtcgcggcc gaatacgatt
     2821 ttagtggctt ggatggcaac gcagattgca ccgccgataa agaccaagtc agctgccgta
     2881 cgtacccaac gcaaggtgtc gaggatttcc atttgcagga actcttcgct gcgtgcatac
     2941 cacaggccgt gcgtgatgga ggcgtatgcc tgaatcacgc caaccggcaa caggctgatg
     3001 gcaatcatac cgaccaagcc gccgttgagc agccagaagc cccaagtcat cagtttgtcg
     3061 tcaaactgcg cgttcggttt caaataacgg gcaaccagca atacgaagcc caatgccaag
     3121 aaaccgtaca caccgaacaa ggcggcgtgc gcatgaacag cagaagtatt caaaccttgg
     3181 atatagaaca gggaaatcgg cgggttaatc aggaaaccga atacaccggc accgatcata
     3241 ttccaaaagg cgactgccac gaagcacatc agcggccaac gcaggcgttt cgcccagtcg
     3301 gacaggtgtt ggtaagacca atgctcgtat gcttcacggc ccagcaacac cagcggcacg
     3361 acttccaaag cggagaagca ggcaccgatt gccatagagg cggaggtaga gccggagaag
     3421 tacaggtggt gcagcgtacc cggaacgccg cccaacataa agatggcggc agcggccaga
     3481 gtagaagctg tggcggtact gcggcggaca aagcccatat tgtagaagac aaaggcaaaa
     3541 gcggcagtgg caaatacttc aaagaagcct tccacccaca ggtgaaccac ccaccaacgc
     3601 cagtattcca ttacggcaat cggggatttc tcgccataga acagtcccgg tgcgtagaat
     3661 acgcccacac cgaccataga agcgacaaag attgccagca ggtttttgtc cacgcctttt
     3721 tctttgaagg cggaaaccgt gcaacgcaac atcaggaaca gccacaacag caggccgacc
     3781 atcagcagga gttgccagaa acgtcccaaa tcgaggtatt cgtaaccttg gtgtccgaac
     3841 cagaagttaa attccggggg aaggatgtgc gtcaacgcga agaagttgcc cgcgtaagag
     3901 ccgccgacca cgatgaagag ggcgatatag aggaagttca cgcctgcacg ttggaacttg
     3961 ggatctttgc cgccgttgac aatcggcgca aggaacaaac ctgccgtcaa aaagccggtt
     4021 gcaatccaga agatggcgga ttggatgtgc caagtacggg tcagggcgta agggaaccag
     4081 tcggacattt caaagcccaa cgcctcgtca atgccgtaga aaccctgacc ttcgacggtg
     4141 tagtgcgcgg tcagaccgcc cagcaatact tgtaccacaa acagggcaac cgtcaggaag
     4201 acgtatttgc ccaatgcttt ttgtgaaggg gtcagttgga ttttggaaat cgggtcttca
     4261 gacggcactt ccacttcctc gtgtttggtc aggaaggaat aaccccacat caacaaaccg
     4321 atgcccatca gcagaagaac aacgctggtg aatgaccaca tatagttttc agtggtcggt
     4381 acgttgttga tcaaaggctc gtgcggccag ttgttggtat aagtgaacgt ctcgtcagga
     4441 cggttggtcg aagcagacca agaagtccag aagaagaagt cgaacagttt ttcacgcgct
     4501 tcttggcttg gcaatgtgtt gtttttcatt gcaaagtgtt cgcgggtggt ttgcagcgcg
     4561 ggatcatcgc cgtaaacacc gtggtaataa ggcaggatgc tttcgatggc tttcacgcgc
     4621 gtatcgctga tgacgacgct gccgtcttct ttaatacggc tttggttgcg gtattcgtca
     4681 gccagtcggg ttttcagaac ggcttgttct tcaggggaaa cttcatcgaa ttttttgccg
     4741 taagtctgtt gcgcggtcaa atccaactat gcaaccaact cacgatgcag ccagtcggcc
     4801 gtccagtccg gagcctgata tgcgccgtga cccagaatcg aaccgacttc cataccgccg
     4861 gtactctgcc acgcagactg acctgccaaa atatcgtctt tcgtcatcag cactttgcct
     4921 gatgcggaaa cgacctgttc agggtaaggc ggggcttttt tgtaaacctc gctgcccata
     4981 tagccaagaa tggtaaagca taccgccaga acggcaaaca gcaagtacca tagcttcttg
     5041 tactgtccca tttttagagc tccttttggt aaaagtggtt gtttaaaatt cacagaatat
     5101 gaatgttaaa gattgtagca cggtttagcg cacaaataaa catttgttca aagaaactca
     5161 catataaaac aaatacatat atgataataa ctatcatttt ctttagtcgg caactaccct
     5221 gcctttgcct gatttgccga agcccttaag caaatcagcc tattcattgt aatttttagt
//
LOCUS       DAXIFS010000129         5276 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.129, whole genome shotgun sequence.
ACCESSION   DAXIFS010000129 DAXIFS010000000
VERSION     DAXIFS010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5276
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.129"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..534
                     /locus_tag="ACFOCA_001520"
     CDS             <1..534
                     /locus_tag="ACFOCA_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6988220.1"
                     /translation="LLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPPLFCTLV
                     EISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACATSFWLFFVFK
                     TESSCRLWQPLKRLPLYTHTLLCLTSSAAYTCFGTPANYPLFAGVWAVYLAGCILRHW
                     KDLHKLFHYLKKQGFPL"
     gene            531..1603
                     /locus_tag="ACFOCA_001521"
                     /pseudo
     CDS             531..1603
                     /locus_tag="ACFOCA_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
     gene            1617..2789
                     /locus_tag="ACFOCA_001522"
     CDS             1617..2789
                     /locus_tag="ACFOCA_001522"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6988221.1"
                     /translation="MNITIVAPYCSLPSEPHFNRFWYLAELLSQSHDVLLITSNFKHY
                     DKSFRRPEDAEAASQGRLKVMLLEESGYSKNVSLGRVTSHHRFVKHFEKWLENCRPGE
                     QDVVFSAYPLIATNLLLGKHKARLGYKLIVDVQDVWPESFSSVVPFLKKVPHNLLPFA
                     SRANRAYRYADALVAVSQTYLDRAKETNPNVPGEVIYIGADFPKLDAAPAKDFGDDKT
                     RFFYLGTLSYSYDVETVCKGVRKLLDDGENVELHIMGGGPDLDRLKQYACDGIKFYGY
                     IPYAEMMSVAKGCDISVNAIHSHAMQSVTNKLSDYMALQKPILNSQVNDEVAEVLTLL
                     PHADYRSGDVDGFVQADKDILKRKNDPVQSEEIVRRFKRDVAYQKIVNLIERLAHE"
     gene            2782..3399
                     /locus_tag="ACFOCA_001523"
     CDS             2782..3399
                     /locus_tag="ACFOCA_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HFC6988222.1"
                     /translation="MNKFFKRLFDIIASASGLIILSPVFLILVYLIRKNLGSPVFFIQ
                     ERPGKDGRPFKMIKFRSMRDAIDKDGNPLPDSERLTDFGKKLRATSLDELPELWNVLK
                     GEMSLVGPRPLLMGYLPLYNEFQNRRHEMKPGVTGWAQVNGRNAISWDEKFAHDVWYI
                     DNFSFWLDIKILFLTVKKVFVKEGISAEGEATMPYFTGNKTDEKK"
     gene            3386..4360
                     /locus_tag="ACFOCA_001524"
     CDS             3386..4360
                     /locus_tag="ACFOCA_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HFC6988223.1"
                     /translation="MKKNNILILSAGRRVELVQDFQTEAARFSDGISVFATDLNPRMS
                     SACHVSDGSFEVPPISADSYIDSIFNLAVRENIGLIIPTIDTELQKLADERERFEAAS
                     VHIVVSDSDFIAQCRDKRKTATLFARYGIRSPEIYDRKKLVFPCFAKPYDGSRAIGAK
                     RIDTPADLTPEVLADTKLMFCQFIDIENKFSEFTVDMYYDRQCRLKCAIPRKRLEVRS
                     GEISKGVTCKNSLYQTLLEKMSVLQGARGCITAQFFYNEETGEFYGVEINPRFGGGFP
                     LTYAAGGNYPSRLMREYLGDEEIPFSDDWENNLIMLRYDAKVLVHEND"
     gene            4347..5033
                     /locus_tag="ACFOCA_001525"
     CDS             4347..5033
                     /locus_tag="ACFOCA_001525"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6988224.1"
                     /translation="MKTINPETTVIVFDLDDTLYSEYEYKLSGIRSVIDTVAALYPDW
                     NSDNLWRNIDPDGKDWLDKLCRHCGFNESEKQVLLWQYRLHRPTLTPYAPPDFLSELT
                     APFAARALITDGRSLTQRLKLEALGLSSLFDDILISEACSSEKPDSKRFRHLQDKYAD
                     KAGCFIYIGDNISKDFIAPNTLGWITIGLLPSGQNIHRHQPESFNTEYHPDFWVNSFQ
                     DLVPIIDSNT"
     gene            complement(5096..>5276)
                     /locus_tag="ACFOCA_001526"
     CDS             complement(5096..>5276)
                     /locus_tag="ACFOCA_001526"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988225.1"
                     /translation="LIAYAVPVLGFLRGSGFAGLPATVMPSGMSHTITAPAPIQLPSF
                     PNGVENVGRKAVYAP"
BASE COUNT         1276 a         1537 c         1261 g         1202 t
ORIGIN      
        1 ctgcttgcct ccgccctctg cctgaccggc attttctcgc ccctcgcctc cctcctgctg
       61 ccggaaaact acgctgccgt ccggtttatc gtcgtatcgt gtatgctgcc gccgctgttt
      121 tgcacgctgg tagaaatcag cggcatcggt ttgaacgtcg tccgaaaaac acgcccgatc
      181 gcgctcgcca ccttgggcgc gctggcggca aacctgctgc tgctggggct tgccgtaccg
      241 tccggcggcg cgcgcggcgc ggcggttgcc tgtgccacct cattctggtt gttttttgtt
      301 ttcaagacag aaagctcctg tcgcctgtgg cagccgctca aacgcctgcc gctttatacg
      361 cacacattgc tctgcctgac ctcctcggcg gcctacacct gcttcggcac accggcaaac
      421 taccccctgt ttgccggcgt atgggcggta tatctggcag gctgcatcct gcgccactgg
      481 aaagatttgc acaaactgtt tcattatttg aaaaaacaag ggtttccatt atgaaaatca
      541 tcctgaccac ttctatgtcg ggcttgggcg gcacggaaac cgccaccgtc cgcctcgggc
      601 ggctgctcaa acggcgcggg cacgacatca tccttgcttc ttcggacggg ccttttgtcg
      661 gagaggcgca agcatcgggc atccgttggc agccggttga tttttaccgg ggcgggcttg
      721 ccggctacct caaaagcacc tttgcctacg cccggatgct gcgccgcgaa caacccgaca
      781 tcatcgactg ccaaatggcg cgcgttgttc cagcctgcgc ccttgccgcc aaaatcgttt
      841 cgccgaaaac caaaatcatc taccactcgc acggtttgga cgcggcaacc taccccaaaa
      901 tcgccaagct cttcgacaag ctgggcgtgt acatcatcgg caactgtaaa cacgagcgcg
      961 aaaaactcat ccgccacggc ttccccgccg gccggattgc ctacgcctac aacgcactcc
     1021 cccccccccg gaatttcatt tccggaaaac caaaaaagaa tgcgccgtac tcggcacact
     1081 ttcccgtttg gacaccgtcc gcgccgtgca tctgatgttg gatattttga agaaaatggt
     1141 tgaccgcggt atgcctgtac gcctcaacgt tgcaggtatc ggcgaagaaa tggacaacct
     1201 caaagcccaa gccaaacgtt tgggcattga agacaaagtc accttcctcg gcggcgtccg
     1261 cgatttgacc ggctacttca aagaagtcga tattttggtg aacacgccgc attgcgtggg
     1321 cgatcacggc gcaggtgtcg gcaacaatat tttggaagcc ggcctttacg acacgcctgt
     1381 cgtgacctac aacatggcgg gcatttccga aatggtcatt accggccaaa ccggctactg
     1441 cattcctttc ggcgacgacg aagcatttat cgaagccgtc gatacactca tcaagcatcc
     1501 agagttgcgc agccaaatgg gcaaagccct gcacaaacat gtcgaaacct tatgctccga
     1561 cgacgaaatc taccgcacca ccatggctgc gtacgaaatg taaggccgtc tgaaacatga
     1621 acattaccat cgtcgcccct tattgctcgc tgccgtccga gccgcatttc aaccgcttct
     1681 ggtatcttgc cgagctgttg tcgcagtcgc atgacgtgtt gctgattacc agcaacttca
     1741 agcactacga caaatctttc agacggcccg aagatgccga ggccgcctca caaggccgtc
     1801 tgaaagtcat gctgttggaa gaaagcggat acagcaaaaa cgtgtcttta ggacgcgtga
     1861 ccagccatca ccgcttcgtc aaacattttg aaaaatggtt ggaaaactgc cgtccgggcg
     1921 aacaagacgt cgtcttttcc gcctatccgc tgattgccac caacctactg ttgggcaaac
     1981 acaaagcgcg tttgggttac aaactgattg tcgatgtgca ggacgtatgg ccggagtctt
     2041 tctcctcggt cgtaccgttt ttgaaaaaag taccgcacaa cctgctgccc tttgcttcac
     2101 gcgccaaccg ggcctaccgc tacgccgacg cgctggttgc cgtatcgcag acttatctcg
     2161 accgcgccaa agaaaccaat ccgaacgtac ctggcgaagt catctatatt ggtgctgact
     2221 ttcccaaact cgatgccgca cctgccaaag attttggcga cgacaaaacc cgctttttct
     2281 acttgggcac gctcagttac agctatgacg tggaaaccgt gtgcaaaggc gttcggaaac
     2341 ttttggacga cggcgaaaat gtagagctgc acatcatggg cggcggcccc gatttggaca
     2401 ggctcaaaca atatgcctgc gacggcatca agttttacgg ctacattcct tacgccgaaa
     2461 tgatgtcggt cgccaagggc tgcgacattt ccgtcaacgc catccatagc cacgccatgc
     2521 agtcggttac caacaaactc tctgactata tggctttgca aaaaccgatt ctgaacagcc
     2581 aggttaacga cgaagttgcc gaagtcctta ccctgctgcc gcatgcggac taccgctccg
     2641 gcgatgtgga cggtttcgtt caagccgata aagatatttt gaagcgcaaa aacgatcctg
     2701 ttcagtccga agaaatcgtc cgccgcttca aacgcgacgt tgcctatcaa aaaatcgtca
     2761 acctgattga aagattagct catgaataaa tttttcaaac gcctgtttga cattattgcc
     2821 tccgcctcag ggctaattat cctgtcgcct gtgtttttga ttttggtgta cctcatccgc
     2881 aaaaacttag gctcgcccgt gttcttcatc caagagcggc cgggcaagga tggcaggccg
     2941 tttaaaatga ttaaattccg ctccatgcgc gatgcaatcg ataaagacgg caacccgctg
     3001 ccggacagcg aacgcctgac tgatttcggc aaaaaattac gcgccaccag tttggacgaa
     3061 cttcctgaat tatggaatgt cttaaaaggc gagatgagcc tggtcggccc tcgtccgctt
     3121 ttgatgggct acctgccgct ttacaacgaa tttcaaaacc gccgccacga aatgaaaccg
     3181 ggcgtgaccg gttgggcgca agtcaatggc cgcaacgcca tttcatggga tgaaaaattc
     3241 gcccacgatg tttggtacat cgacaacttc agcttttggc tggatatcaa aattttgttc
     3301 ctgacggtta aaaaagtctt cgtcaaagaa ggcatctcag ccgaaggaga agccaccatg
     3361 ccttatttca cgggtaataa aactgatgaa aaaaaataat atactgattc tgtcggcagg
     3421 tcgccgtgtc gaattggtgc aggacttcca aaccgaagcc gcacgttttt cagacggcat
     3481 cagcgttttt gccactgacc tcaacccccg catgtcttct gcctgccatg tttcggacgg
     3541 ttcatttgaa gtgccgccga ttagtgccga ttcatatatc gacagcattt tcaatctggc
     3601 ggtacgcgaa aatatcggtt taatcatccc aaccatagac accgaactgc aaaagctggc
     3661 agacgagcgc gaacgctttg aagcggcaag tgtccacatc gtcgtttccg attcggactt
     3721 catcgcacaa tgccgcgaca aacggaaaac cgccaccttg tttgcccgct acggcatacg
     3781 ctcacccgaa atttacgacc gcaagaagtt ggttttccct tgcttcgcca agccttatga
     3841 cggcagccgc gccatcggtg caaaacggat tgacacacct gccgacctga caccggaagt
     3901 cttggcagac accaaattaa tgttctgtca gtttatcgac atcgaaaata aattttccga
     3961 gtttaccgtc gatatgtatt acgaccgtca atgccgtctg aaatgcgcca tcccgcgaaa
     4021 acgcttggaa gtgcgctccg gcgaaatcag caaaggcgtt acctgcaaaa acagcctcta
     4081 ccaaacgctg ctggaaaaaa tgtcggtatt gcagggcgcg cgcggctgta tcacggcgca
     4141 gttcttctac aacgaagaaa ccggcgaatt ctacggcgtg gaaatcaacc cccgcttcgg
     4201 cggtggcttc ccgctgacgt atgccgcagg cggcaattat ccgagccggt tgatgcgcga
     4261 atacctcggc gacgaagaaa tcccgttttc agacgactgg gaaaacaacc tcattatgtt
     4321 gcgctacgat gccaaggtct tggttcatga aaacgattaa tcctgaaacc accgtcatcg
     4381 tcttcgactt ggacgatacc ctgtattcgg aatacgaata caagctctcc ggtatccgtt
     4441 cggtcatcga taccgttgcc gcactgtatc ccgattggaa ttcagacaac ctatggcgca
     4501 acatcgaccc cgacggcaaa gattggctgg acaaattgtg ccgccactgt ggttttaatg
     4561 aatcggaaaa acaggttctt ttgtggcaat accggctgca ccgcccgacg ctgactccgt
     4621 atgctccgcc ggatttcctg tccgaactga ccgcgccctt cgccgcacgc gcgctgatta
     4681 ccgacggcag aagcctgacc caacgcctga agctggaagc cttgggtctg tcttccctgt
     4741 ttgacgacat cctcatctct gaagcctgct cttcggaaaa gcccgacagc aaacgcttcc
     4801 gccatcttca agacaaatat gccgacaagg caggctgctt catctatatc ggcgacaaca
     4861 tttccaaaga ctttatcgcg ccgaacactt tgggctggat aaccatagga ttgcttccct
     4921 ccggacagaa catccaccgc caccagcctg aaagttttaa cacagaatat catcccgact
     4981 tttgggttaa ctcctttcaa gatttagttc ctataattga ttcaaatact taaccattac
     5041 ataatcaaac atgcactcac aatattaaaa ggactatttc atgacaaaat attattcatg
     5101 gggcgtaaac ggctttccgc cctacgtttt cgacaccatt tggaaacgat ggaagttgaa
     5161 tgggcgcggg ggcggttatc gtgtgcgaca tcccggacgg catgaccgtc gcgggcaatc
     5221 cggcaaagcc gctgccgcgc aaaaacccca agaccgggac ggcataagcg attaaa
//
LOCUS       DAXIFS010000130         5259 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.130, whole genome shotgun sequence.
ACCESSION   DAXIFS010000130 DAXIFS010000000
VERSION     DAXIFS010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5259
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.130"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(269..454)
                     /locus_tag="ACFOCA_001527"
     CDS             complement(269..454)
                     /locus_tag="ACFOCA_001527"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988226.1"
                     /translation="MFDKQARFWIGEFDGEKECAAGNEVSAITRHRIFVFGLNVGEGT
                     VCCLGFNFVEVEVFRRH"
     gene            477..806
                     /locus_tag="ACFOCA_001528"
     CDS             477..806
                     /locus_tag="ACFOCA_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988227.1"
                     /translation="MDVQKQYPFETVAVCVLPNHIHAIWTLPPDDADYSLLRRLIKTK
                     FSAYSPYTKNLSAGKQRQHERGIWQRRFYGHTVRDETDLQRCADYIHSNPIKQKMSRA
                     KTESCKK"
     gene            complement(1041..1931)
                     /gene="sucD"
                     /locus_tag="ACFOCA_001529"
     CDS             complement(1041..1931)
                     /gene="sucD"
                     /locus_tag="ACFOCA_001529"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFC6988228.1"
                     /translation="MSVLINKDTKVLVQGFTGKNGTFHSEQALAYGTKVVGGVTPGKG
                     GQTHLNLPVFNTMKEAVKETGADASVIYVPAPFVLDSIVEAVDSGVGLVVVITEGVPT
                     LDMLKAKRYLETNGNGTRLVGPNCPGVITPDECKIGIMPGHIHTPGRIGIISRSGTLT
                     YEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIDALKLFQEDPDTDAIIMIGEIGGTAEE
                     EAAEYIQSNVTKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAAFEKAGIAYT
                     RSPAELGTTMLEVLKTKGLA"
     gene            complement(1942..3156)
                     /gene="sucC"
                     /locus_tag="ACFOCA_001530"
     CDS             complement(1942..3156)
                     /gene="sucC"
                     /locus_tag="ACFOCA_001530"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFC6988229.1"
                     /translation="MWRQTRGHSTNLKEKSMNLHEYQAKELLAGYGLPVQGGILAHNG
                     EEAAAAYDKLGGKFAVVKAQVHAGGRGKAGGVKVVKSREEAKEVAESLIGTNLVTYQT
                     DANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEK
                     IFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPL
                     AVRENGALACVDGKIGIDSNALYRLPKIAELRDKSQENERELKASEFDLNYVALEGNI
                     GCMVNGAGLAMATMDIIKLKGGQPANFLDVGGGATKDRVVEAFKLILEDKSVQGVLIN
                     IFGGIVRCDMIAEAIVAAVKEINVDVPVVVRLEGNNAELGAKILNESGLKLTSADGLN
                     DAAEKIVAAVNA"
     gene            complement(3208..3495)
                     /locus_tag="ACFOCA_001531"
     CDS             complement(3208..3495)
                     /locus_tag="ACFOCA_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988230.1"
                     /translation="MNKEIVGIFFIPAGIISMCMAVLWQMYVMMTETYTLNRFKDKEL
                     VWRVALLFISFSLAVYLLCPNSRKKGIVFFILGGGGAAMYLLARMWLPFSK"
     gene            complement(3620..5053)
                     /gene="lpdA"
                     /locus_tag="ACFOCA_001532"
     CDS             complement(3620..5053)
                     /gene="lpdA"
                     /locus_tag="ACFOCA_001532"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6988231.1"
                     /translation="MSQYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNAPA
                     LGGTCLNVGCIPSKALLQSSEHFHAAQHEFAEHGITVGDVKFDVAKMIERKDAIVTKL
                     TGGVKFLFQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRP
                     LPQVAIDNVNVLDNEGALNLTEVPAKLGVIGSGVIGLEMGSVWNRVGAEVTILEAAPT
                     FLAAADQQIAKEAFKYFTKEQGLSIELGVKIGDIKSEGKGVSVAYETAAGEAKTEVFD
                     KLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIGDVVRGPMLAHK
                     ASDEGVAVAERIAGQKPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEGVEYKKGTSGF
                     GANGRALAMGKAKGTVKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIA
                     RIIHAHPTLSEVVHEAALAADKRALHG"
BASE COUNT         1242 a         1352 c         1244 g         1421 t
ORIGIN      
        1 atgaaaatgg taatttgcat cctctacatc attatgacat tttttatcaa aacaaaaata
       61 cttttaaaat tggtttaaag tcagccatcg gatgcaagga atttattgaa ttactggatt
      121 gcaccgaaga aagaagcttt cttagcaaac tgtagtctgc atactcaacc cacagcgtgc
      181 gtggctgcac cacacacgcg ggttgcttga ttgtcggttt gccattttca aatttgcttt
      241 cgttgaagct agcgctttca gacggcctct aatgtcgtct gaaaacctca acttcaacaa
      301 agttaaaccc taaacaacaa accgttcctt ctccaacgtt caaaccaaaa acaaaaatcc
      361 tatggcgcgt tatcgcagaa acttcattgc cggcggcaca ttctttttca ccgtcaaact
      421 cgccgatcca aaatcgcgcc tgcttgtcga acatatcggc ttcgcgtgcg gcttatatgg
      481 atgtgcaaaa acaatatccc tttgaaaccg tcgccgtatg cgtgctgccg aaccatattc
      541 acgccatttg gacgctgccg cccgacgatg cggattattc cctactccgg cggctgatta
      601 aaaccaaatt ctccgcatat tccccttata ctaaaaactt atccgccggc aaacagcggc
      661 agcacgaacg cggtatttgg caacggcgtt tttacggaca caccgtgcgc gacgaaacgg
      721 atttgcagcg ttgcgcggac tacatccatt ccaatcctat caaacaaaaa atgtcgcgtg
      781 ctaaaacaga atcctgcaaa aaataatatc agtcttttca aatgcgatag ttatcattcc
      841 ccaacttcaa acaaggcgtg tgcaacctga cttacgggtt tgctcctgtt tgaccgataa
      901 atattctgcc tgcctcaaag ggcaaaaata atgtgggtat gttgaggctg cctctttttg
      961 aaatgacaaa caaaatgccg tctgaaaccc gatttccggt ttcagacggc atttgatgtt
     1021 caatcagttg tcaaacctga ttatgccaaa ccttttgttt tcaacacttc cagcatggta
     1081 gtgcccaact cggcagggct gcgggtgtaa gcgataccgg ctttttcgaa agcggcgaat
     1141 ttttcctcgg cagtaccttt accgccggaa ataatcgcac cggcgtggcc catacgtttg
     1201 cctttaggag cggtaacacc agcaatgtaa cctacaacag gtttggttac gttggattgg
     1261 atgtattcgg ctgcttcttc ttccgcagta ccgccgattt caccgatcat gatgatggcg
     1321 tcggtatccg ggtcttcttg gaagagtttc agtgcgtcga tttgattcat accaggaatc
     1381 gggtcgccgc cgataccgat acaggttgat tgacccaagc ccagtttggt ggtttgtgcc
     1441 acggcttcgt aagttaatgt accggaacgg gaaataatac cgatgcggcc cggagtgtgg
     1501 atgtggcccg gcataatacc gattttgcac tcatccggag taatcacgcc tgggcagtta
     1561 gggccgacca agcgggtacc gttgccgttg gtttccaaat aacgtttggc tttgagcatg
     1621 tccagagtag gcacgccttc ggtaatcaca acgaccaagc ctacgcctga atcaacggct
     1681 tcaacgatag aatccaacac aaacggagcg ggaacgtaaa ttacagatgc atccgcgccg
     1741 gtttctttaa ccgcttcttt catggtgttg aatacaggca ggttcaggtg ggtttgaccg
     1801 cctttgcccg gggtaacgcc gccgacaact ttagtgccgt aagccagagc ttgttcggag
     1861 tggaaagtac cgtttttacc ggtgaaacct tgaaccaata ctttggtgtc tttattaatc
     1921 aatacgctca ttcttttctc cttaggcgtt tacggctgcg acaatttttt cggctgcgtc
     1981 attcaggccg tctgcagaag tcagtttcag acctgattcg ttcaggattt tcgcgccgag
     2041 ttcggcgttg ttgccttcca aacgaacaac gacaggaacg tcgacgttga tttctttaac
     2101 ggctgccacg atggcttccg caatcatgtc gcaacgtacg ataccgccga agatgttgat
     2161 caatacgcct tgaacggatt tgtcttccag aatcagtttg aacgcttcaa ccacgcggtc
     2221 tttggttgcg ccgccgccaa cgtccaagaa gttggcaggt tggccgcctt tcagtttgat
     2281 gatgtccata gtggccatcg ccaaaccggc accgttcacc atacagccga tgttgccttc
     2341 cagggcaaca tagttcaggt caaattcaga agctttcaac tcgcgttcgt tttcttgaga
     2401 tttgtcgcgc aattcggcga ttttcggcag gcggtagagc gcgttgctgt cgatgccgat
     2461 tttgccgtcc acgcaggcga gcgcgccgtt ttcgcgaact gccagcgggt tgacttcaaa
     2521 cagggcgaag tcattttcga caaacgcttt gtacgcaccg gtcatcagtt tgacgaactc
     2581 gttgatttgt ttgtctttca agcccagttg gaacgcaact tcgcgagctt ggcaaggttg
     2641 caggccgacc agcggatcaa cggttacttt gaagattttt tcaggagttt cggcagcaac
     2701 tttttcgatt tccacgccgc cttcggtaga ggccatgaat gtaatgcggc gggtagaacg
     2761 gtcaaccact gcgcccaagt acagctcggt ttgaaccgga tacatgtctt cgcaaaccaa
     2821 aacgctgttg acaggttggc cgttggcatc agtttggtaa gttaccaagt tggtgccaat
     2881 caggctttca gccacttctt tagcttcttc gcggctttta acgactttta cgccgcccgc
     2941 tttaccgcgg ccgccggcgt gtacttgtgc tttgacaaca gcgaatttgc cgcccaattt
     3001 gtcgtaagct gcagcggctt cttcgccgtt gtgtgccaaa ataccgcctt gtacgggcaa
     3061 accgtagcca gccagcagtt ctttagcctg atactcgtgt aaattcatgg atttctcctt
     3121 tagattagtg gaatgccccc gagtttgcct ccaaatggca agcccgtgcg tttcagacta
     3181 cctttcggcg gtcggaaaat cgtcgtttca cttgctgaaa ggcaaccaca tccgcgccag
     3241 cagatacatg gctgcaccgc ctcccccgag aataaaaaag acgatgcctt ttttacgcga
     3301 attcgggcag agcagataaa cggcaaggct gaaactgata aacaacaatg ccacgcgcca
     3361 aaccaattct ttatctttga aacggttgag cgtataagtt tcggtcatca tcacatacat
     3421 ctgccacaat acggccatac acatgctgat gatgcccgcc ggtataaaga aaataccgac
     3481 tatttctttg ttcataatga atgtaaatgc tgtttgtttg tctgacggaa ttataaatca
     3541 gaaaacgaag ctctcggaac attcaatttg tcggaggcct taaggccgtc tgaaaagttt
     3601 cagacggcct taatgtctat caaccgtgca aagcgcgttt gtcggccgcc aatgcagctt
     3661 cgtgaaccac ttcggacaag gttgggtggg catggataat gcgggcgatg tcttcgctgc
     3721 tggcgaagaa ttcgagcgca gtcacgcctt cggtaaccaa ttcgctgaca accggaccaa
     3781 tcatgtgtac gcccaagatg cggtcggttt tggcatctgc caacacttta accgtacctt
     3841 tggctttgcc cattgccaat gcgcgaccat tcgcaccaaa acctgaagta ccttttttgt
     3901 actccacgcc ttcggctttg agctgctctt cggttttacc cacccaagcg atttcaggat
     3961 cggtgtaaat cacgaacggt acgttgttga agtcgatatg cggtttttga ccggcaatgc
     4021 gttcggcaac ggcaacgcct tcgtcgctgg ctttgtgtgc caacatcggg ccgcgaacca
     4081 cgtcgccgat tgcccatacg ttaggcaggt tggtacggca ttcgccatct actttgataa
     4141 agccgcgctc gtctttttcc aagcctacgg cttccgcgtt caggcctttg gtgtttggaa
     4201 tacggccgat ggcaacgatc agtttgtcga atacttcggt tttggcttcg ccagcagcag
     4261 tttcgtaagc aacggaaaca cctttgcctt cagacttgat gtcgccgatt ttcacgccca
     4321 attcgatgct cagaccttgc tctttggtga agtatttgaa ggcttctttg gcgatttgtt
     4381 ggtcggcggc agccaggaag gtcggcgcgg cttcaagaat ggtaacttcc gcacccacgc
     4441 ggttccatac ggaacccatt tccaaaccaa tcacaccgga accgatcacg ccgagtttgg
     4501 caggtacttc ggtcaggttc aatgcgcctt cgttgtccaa tacgttcaca ttgtcgatag
     4561 cgacttgcgg caacggacgc ggtacggaac cggtcgctac gatgacgtgt ttggcttcga
     4621 taacggtttt ctcacctttg ttatcgactt cgatttggta agcatcgcca tttttgccgg
     4681 caaaggaagc cgtaccgaac aggctggtta ctttgttttt ctggaacagg aatttcacgc
     4741 cgccggtcag tttggttacg atggcatctt tgcgctcaat cattttggcc acgtcgaatt
     4801 ttacgtcgcc gacagtgata ccgtgttcgg caaactcgtg ttgcgctgcg tggaaatgtt
     4861 cgctggattg caacagggct ttagaaggga tacaacctac gttcaagcaa gtaccgccca
     4921 atgcaggggc attgcctgct ttgttaacgc ctgcatcgac acaggcagtt ttgaaaccca
     4981 gttgtgcggc acggatggcg gcaacgtatc cgcccgggcc tgcaccaatc actactacat
     5041 catattgaga catcgtgtca tcctttgctt ttagcagtat ctcaaaataa aaacgatact
     5101 tttcgtttct tttttatttt gaatgactgc gttttgatgg ttttaagaaa aagccgtctg
     5161 aaagtccata tctgccgatt cattcgaatc aaatgtttca gacggtctca atcgtttgtt
     5221 gagcctattg tagcacgata ctacattacg ctacatcta
//
LOCUS       DAXIFS010000131         5214 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.131, whole genome shotgun sequence.
ACCESSION   DAXIFS010000131 DAXIFS010000000
VERSION     DAXIFS010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5214
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.131"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..553
                     /gene="rsmA"
                     /locus_tag="ACFOCA_001533"
     CDS             <1..553
                     /gene="rsmA"
                     /locus_tag="ACFOCA_001533"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFC6988232.1"
                     /translation="DKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLFKLAEVA
                     DDVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPKVD
                     SAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINPQ
                     DRAEHIAPEKYVALSNYLAGKAV"
     gene            726..1454
                     /locus_tag="ACFOCA_001534"
     CDS             726..1454
                     /locus_tag="ACFOCA_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6988233.1"
                     /translation="MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLI
                     RTVNQLESIESGEIWVDGVNVADPKTDLNKIREEVGFVFQSFNLYPHLTVLENITLAP
                     MKVKGQNAEQAEKKAMELLERVGLAHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLF
                     DEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVIFVDKGQILEDE
                     TPEAFFTNPKHERAKQFLQQVMTH"
     gene            1527..1886
                     /locus_tag="ACFOCA_001535"
     CDS             1527..1886
                     /locus_tag="ACFOCA_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988234.1"
                     /translation="MYFVDRTAVVLKPTARFLEWLKSTDENMPDLTIEQLRANCSVFL
                     VPQFDEPEAVVSYFDERYRQIFEAELAGWDINKDKWPQDMGLKAFWEFFDIEIHDMVL
                     DMEEAELNITPVFDNMM"
     gene            1891..2331
                     /locus_tag="ACFOCA_001536"
     CDS             1891..2331
                     /locus_tag="ACFOCA_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HFC6988235.1"
                     /translation="MRAFQTALRPSRILNILTVSLHSASLAVCLTWFYGRMMWFGLAA
                     LVASYAYSLRITNLKHRHAITAITIDRDGQAEIVSGKDKTAATLAGSSMVTPYALFLQ
                     WDTGGKTVSQCIIPDMTDKESYRRLKVWVLWRQPKKTAETDTPS"
     gene            2363..3637
                     /gene="folC"
                     /locus_tag="ACFOCA_001537"
     CDS             2363..3637
                     /gene="folC"
                     /locus_tag="ACFOCA_001537"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HFC6988236.1"
                     /translation="MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLTPQCPVVV
                     VAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNERIAVNAEPVSDDTIIASFER
                     IEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAVNAFDGDCAVVTSV
                     DLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVAHAEAIGAKLLMVQRDF
                     EFHALENIQWNYRFHPQHSDDPTRNRNALPFPALRGAYQLSNAACTLTVLECLNDKLP
                     VDIGAIKRGLLLVENPGRFQVLPGRPLTVLDVGHNPHAARALRRSLINLAFAQKRTAV
                     FSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHEHGIENIQTFAAVR
                     EAYRAAASKAGENDRIVVFGSFHTVADVMSVL"
     gene            3650..4648
                     /gene="ftsN"
                     /locus_tag="ACFOCA_001538"
     CDS             3650..4648
                     /gene="ftsN"
                     /locus_tag="ACFOCA_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6988237.1"
                     /translation="MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSS
                     GPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDLAGEDKPSAADSEISEPENVGAP
                     LVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
                     KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKA
                     DKAESKKTAEKDRSDGKKHETAQKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSL
                     QRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE"
     gene            4641..5138
                     /locus_tag="ACFOCA_001539"
     CDS             4641..5138
                     /locus_tag="ACFOCA_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFC6988238.1"
                     /translation="MNNLPVADLLVFAIIAACIVLSAMRGVIAEAGSMAAWVVSFFFA
                     KLFAAPFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTGAVSAVGLGFANR
                     ILGGVFGALKGILIITLLVMLASKTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGGTAE
                     TPEDD"
BASE COUNT         1382 a         1470 c         1340 g         1022 t
ORIGIN      
        1 ggataaactg gtgattcacg aaggcgatgt attgcagttt gatttcaacg gcatcgcagg
       61 caaaaagaaa atcgtcggca acctcccgta caacatttcc acaccgcttt tgttcaagct
      121 ggcggaggtg gcggacgatg tcgtcgatat gcactttatg ctgcaaaaag aagtggtcga
      181 gcgtatggtt gccgcgccga aaagcaacga ctacggccgc ttgggcgtga tgctgcaata
      241 ttttttcgat atggaaatgc tgattgacgt accgcccgaa tcgttcgacc ctgcgccgaa
      301 agtggattcc gccgtcgtcc gtatgattcc ggtgaaacac cgcatcggca aggcggacga
      361 tttcgagcat ttcgccaaac tggtgaaact cgccttccac caacgccgca aaaccatacg
      421 caacaacctg aaagagcttg caggcgacga tgatttgcag gctgtcggca tcaatccgca
      481 agaccgtgcc gaacacatcg cgccggaaaa atacgtagcg ttgagcaatt atctggcggg
      541 caaggccgtc tgaaaaggga gtaagccgat gaagaaatac ctgcttttac ccctgatact
      601 gccgcttgca gcctgcctga ccaatccgaa cgaccgtttt tttgacggca gacgctacac
      661 gcttcatcat atggagctcc cgtaacgaca acctgcaacg gcaaatgccg tctgaaagaa
      721 aagacatgat caaattcaaa aacgtacaca aacatttcaa agacctgcac gtcatcaacg
      781 gcgtgaactt ggaaatcaaa aaaggcgaag tggtcgtcgt ctgcgggcct tcgggcagcg
      841 gcaaatccac actcatccgc accgtcaacc agcttgaaag catcgaaagc ggcgagattt
      901 gggtggacgg tgtcaacgtt gccgacccaa aaaccgattt gaacaaaatc cgcgaagaag
      961 tcggctttgt gtttcaaagt ttcaacctct acccgcacct gaccgtgttg gaaaacatta
     1021 ccctcgcacc gatgaaggtt aaggggcaaa atgcggaaca ggcggagaaa aaggcaatgg
     1081 agcttttgga acgcgtcgga ctggcacaca aaaaagacgc cttcccttcc caactttccg
     1141 gcggccagca gcaacgcgtg gcgattgcac gcggtttggc gatggaaccg cgcgtaatgt
     1201 tgtttgacga accgacctcc gcactcgacc ccgaaatggt cggcgaagtg ttgaaagtga
     1261 tgaaagactt ggcagaaagc ggcatgacca tgatgtgcgt aacccacgaa atggggtttg
     1321 cccgcgaagt tgccgaccgc gtgattttcg tcgataaagg gcaaatcctc gaagacgaaa
     1381 cgccggaagc gttttttacc aacccgaaac acgaacgcgc caagcagttc ctgcaacagg
     1441 tcatgaccca ttgatgctat gccgtctgaa aaccgaacgt tcagacagca tatcccgaca
     1501 ccgcaagatg attgagaaag aaaaccatgt attttgttga ccgcaccgcc gtcgtcctca
     1561 agccgaccgc gcgctttttg gaatggctca aaagcaccga cgaaaatatg cccgacctga
     1621 ccatagagca gcttcgtgcc aactgttccg tcttcctcgt tccgcagttc gacgaaccgg
     1681 aagccgtcgt ttcctacttc gacgaacgct accgccagat tttcgaggcg gagctggcag
     1741 gttgggacat caataaggat aaatggccgc aagatatggg gctgaaggcg ttttgggaat
     1801 ttttcgacat cgaaatccac gatatggtgt tggacatgga agaagcggaa ttgaacatta
     1861 cccccgtgtt cgacaacatg atgtaaggct gtgcgcgcct ttcagacggc attgaggccg
     1921 tcccgcatcc tgaacatcct gaccgtatcg ctccactcgg cttcccttgc cgtctgcctg
     1981 acctggtttt acggccggat gatgtggttc ggtttggcgg ctttggtggc aagttacgca
     2041 tactcgctca ggataacgaa tctgaaacac cgccatgcca taaccgccat taccatagac
     2101 cgcgacggac aggcggaaat cgtatccggc aaagacaaaa cagcggcaac acttgcgggc
     2161 agcagtatgg ttacgcctta tgccttattc ttacaatggg acaccggcgg caaaaccgtc
     2221 agccaatgca tcatacccga catgacggac aaagaatcct accggcggct gaaagtctgg
     2281 gtgctttggc ggcagccgaa aaaaaccgcc gaaaccgata caccaagctg atttcagacg
     2341 gcatttgaac acggaacact caatgaaaac actgcaagac tggctctccc atttggaaac
     2401 cgcccacagc ggtggcttga tcgatatggg cttggaacgc gtaggcgaag tgaaaaaacg
     2461 gatgaagctc acgccgcaat gccccgtcgt cgttgtcgcg ggaacaaacg gcaaaggttc
     2521 ggtctgcgcc tacctgacac agatttacaa acaggcaggc tttaaagtcg gtacgctgac
     2581 cagcccgcat ttattgcgtt acaacgaacg catcgccgtc aacgccgaac ccgtttcgga
     2641 cgatacgatt attgcctctt tcgagcgcat cgaagcggcg cgcggcgaaa tatcgctgac
     2701 ttattttgaa ttcaatgcct tggcggccgt cgacatcttc atgcgcgaac aggttgacgt
     2761 gatgatattg gaagtcggct tgggcggacg cttggacgcg gtcaacgcat ttgacggcga
     2821 ttgcgcggtg gttaccagcg tggatttgga ccatcaggcg tttttgggcg atacggtcga
     2881 gcaggtcggc tttgaaaaag caggcgtgtt ccgcagcggc aaacccgcca tctgcggtca
     2941 aaaccccgcg cccgcatcat tggtcgcaca cgccgaagcc ataggcgcga aactgctgat
     3001 ggtgcagcgc gatttcgagt ttcacgcgct ggaaaacatc caatggaact accgcttcca
     3061 tccgcaacat tcagacgacc ccacgcgcaa ccgcaatgcc ctgcccttcc ccgcattgcg
     3121 tggcgcatac cagctttcca acgccgcctg cacgttgacc gtattggaat gcttgaacga
     3181 caaattgcct gtggacatcg gcgccatcaa acgcggattg ctgctggttg aaaatcccgg
     3241 ccgcttccaa gtcctgcccg gccgtccgct gaccgttttg gatgtcggac acaatcccca
     3301 cgctgcccgc gccctgcgcc gcagcctgat taatttggcg tttgcgcaaa aacgcaccgc
     3361 cgtattcagt atgctgtccg acaaagacat agacggcgtg ttggaaatcg ttaaagacca
     3421 gtttgacgag tggtatatcg caccgttgga tgtaccgcgc ggcatgacgc tcgagagcct
     3481 gcaaaacaaa ctgcacgaac acggcatcga aaacatacag acattcgccg ccgtccgcga
     3541 agcataccgg gcggcagcct caaaagcggg cgagaacgac agaatcgtcg ttttcggctc
     3601 atttcatacc gttgccgatg tcatgtcggt actttaaaag gaaacttcta tgtccgaaaa
     3661 caaacaaaac gaagtcctga gcggttacga acaactcaaa cggcgcaacc gccgccgcct
     3721 cgtaacggca agttgcctgg ttgccgcctc ctgcatcctg ctggcagccg ccctcagttc
     3781 cggccctgcc gaacagactg ccggcgaaac aaacggcgta gaaaacaaag cggcaggtgc
     3841 ggcacaaacc cctgccttga aatccgccgc cgacaaaccg caggacttgg caggcgaaga
     3901 caagccttct gccgccgaca gcgaaatcag cgagcctgaa aacgtaggcg cgccgctggt
     3961 gctgattaac gaccgcctcg aagacagcaa catcaaaggt ttggaagcat ccgagaaact
     4021 gcaacaggca gaaaccgcca aaaccgcacc gaagcaggca aaacaacgcg ctgccgaaaa
     4081 agtgccggca actgccgaca gtacggatac ggtagcggtt gaaaaaccga aacgcactgc
     4141 cgaaacaaaa ccgcaaaaag cggaacgcac tgccaaagcc aagcccaaag ccaaagaaac
     4201 caaaaccgcc gaaaaagttg ccgacaaacc gaaaactgcc gccgaaaaaa ccaaaccgga
     4261 tacggcaaaa tccgacagcg cggtaaaaga aacgaaaaaa gccgacaagg ctgaaagcaa
     4321 aaaaacagcc gaaaaagacc gttcggacgg caaaaaacac gaaacggcac aaaaaaccga
     4381 caaagcggac aagaccaaaa ccgccgagaa ggaaaaatcc ggtaaaaaag ccgccattca
     4441 ggcaggttat gccgaaaaag aacgcgcctt aagcctccag cgcaaaatga aagcggcggg
     4501 tatcgattcg accatcaccg aaattatgac cgacaacggc aaagtttacc gcgtcaaatc
     4561 aagcaactat aaaaacgcaa gggatgccga acgcgatttg aacaaattgc gcgtacacgg
     4621 tatcgccggt caggtaacga atgaataacc tccccgttgc cgacctcctc gtcttcgcca
     4681 tcatcgccgc ctgcatcgtg ctatccgcga tgcgcggcgt gattgcggag gcaggttcga
     4741 tggcggcatg ggtggtttcc ttcttttttg ccaaactctt tgccgcaccc ttcgccgacc
     4801 tcgcctttgc ctcgttccaa ccccgcctgt ttgcattggc tctgtcgttc atttccctgt
     4861 tcgtcattgc ctgtctgatc cagaaaatgc tccgttcgct gctgaccggc gcagtttcgg
     4921 cggtcggttt gggctttgcc aaccgcattt tgggcggcgt attcggtgca ttgaaaggca
     4981 ttttgattat taccctgctg gtcatgctcg cttcaaaaac cgacctgccc gataccgaag
     5041 aatggcggca atcttacaca ctgccgtttt tcgtatcgct ttccgaagcc gtgttgaacc
     5101 atagcggcgg cacggcggaa actccggaag acgattgatt gccctgctgg cgtttcagac
     5161 ggcattctct tttatgccgt ctgaaatgtt ttttcctttc ctcagccata tcac
//
LOCUS       DAXIFS010000132         5212 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.132, whole genome shotgun sequence.
ACCESSION   DAXIFS010000132 DAXIFS010000000
VERSION     DAXIFS010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5212
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.132"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(41..400)
                     /locus_tag="ACFOCA_001540"
     CDS             complement(41..400)
                     /locus_tag="ACFOCA_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HFC6988239.1"
                     /translation="MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASP
                     RFHRWLHRHRYFGPMVHNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVS
                     SVFCSLVAIWMWRRPES"
     gene            complement(397..1002)
                     /locus_tag="ACFOCA_001541"
     CDS             complement(397..1002)
                     /locus_tag="ACFOCA_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HFC6988240.1"
                     /translation="MTIMNINTSENKDAVAEHTGQWLEKAVIGLNLCPFAKAPHVKNL
                     VRIAISEAKHLDSFLEDLDEELQRLGNTPATELETTLLVHPTLFPDFDVFNDMLDIAD
                     AAVIENGLEGIVQIAPFHPQFRFQNTEPDDIGNYTNRSPYPTLHLIREDSIAKAAQAF
                     PDASAIFERNIALLEKMGHEGWAKLGITSCPYPHNKKNISK"
     gene            complement(1049..1531)
                     /locus_tag="ACFOCA_001542"
     CDS             complement(1049..1531)
                     /locus_tag="ACFOCA_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HFC6988241.1"
                     /translation="MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK
                     QLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFAL
                     TGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
                     "
     regulatory      1735..1832
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            2043..3143
                     /gene="gcvT"
                     /locus_tag="ACFOCA_001543"
     CDS             2043..3143
                     /gene="gcvT"
                     /locus_tag="ACFOCA_001543"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HFC6988242.1"
                     /translation="MITLKTTPFHQAHQDAGAKPVDFAGWELPIHYGSQIAEHEAVRT
                     DAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLI
                     VYRTNEAETQYRIVSNGATREKDTAQFHKVGQEFGVSFNPRYDLGMLAVQGPKAIEKL
                     LTVKPEWADVVHNLKPFQGADLGNDWFVARTGYTGEDGVEVILPGTEAVAFFKALQAA
                     GVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESRDFVGKAALLA
                     LKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGKGETTSGVFSPSLKQSIAIARVPNDF
                     DGDTAKVLIRGKEADVRVLKLPFVRNGQKQFD"
     gene            3306..3692
                     /gene="gcvH"
                     /locus_tag="ACFOCA_001544"
     CDS             3306..3692
                     /gene="gcvH"
                     /locus_tag="ACFOCA_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005960 - glycine cleavage complex
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HFC6988243.1"
                     /translation="MSSNIPAELKYVASHEWLRLEEDGIITVGITHHAQELLGDIVFV
                     ELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVVAVNEDLPSAPETANSDPYGAGW
                     FFKLKPANVADYDVLLTAEQYAGEVD"
     gene            3844..5091
                     /gene="hemA"
                     /locus_tag="ACFOCA_001545"
     CDS             3844..5091
                     /gene="hemA"
                     /locus_tag="ACFOCA_001545"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFC6988244.1"
                     /translation="MQLTAVGLNHQTAPLSIREKLAFAAACLPEAVRNLARSNAATEA
                     VILSTCNRTELYCVGDSEEIIRWLADYHSLPIEEISPYLYTLGMQETVRHAFRVACGL
                     DSMVLGEPQILGQIKDAVRVAQEQESMGKKLNALFQKTFSVAKEVRTDTAVGENSVSM
                     ASASVKLAEQIFPDIGDLNVLFIGAGEMIELVATYFAAKSPRLMTVANRTLARAQELC
                     DKLGVNAEPCLLSDLPAILHEYDVVVSSTASQLPIVGKGMVERALKQRQSMPLFMLDL
                     AVPRDIEAEVGDLNDAYLYTVDDMVNIVQSGKEARQKAAAAAETLVSEKVAEFVRQQQ
                     GRQSVPLIRALRDEGEKARKQVLENAMKQLAKGATAEEVLERLSIQLTNKLLHSPTQT
                     LNKAGEEDKDLVHAVAQIYHLDK"
BASE COUNT         1299 a         1289 c         1447 g         1177 t
ORIGIN      
        1 gccccccgtt tgtttgccct tatccctttc agtacggcat tcaagattcg ggcctgcgcc
       61 acatccatat ggcgacaagg gaacaaaaaa ccgatgaaac cgccccgacc caccagcgtt
      121 ggggaaactg ccaaaacatt atcaggcagg atgcggtcat catactgatg gcgaatattt
      181 tggctttgcg cggcactgcg ccgttttgtt cccagttatg aaccatcgga ccgaaatagc
      241 ggtgccggtg cagccagcgg tgaaagcgcg gggatgcctt tgcccagcag gcggcggaga
      301 gcagtacgaa cggcgtggtc ggcaacagcg gcaaaaaaat gccgatgata cccaacagca
      361 gggagatgca gccgcaggca attaaaagat aacgtatcat tttgaaatat ttttcttatt
      421 gtgcggataa gggcaggatg tgataccgag ttttgcccag ccttcatgtc ccattttttc
      481 cagcagggcg atattgcgtt cgaatattgc cgaagcgtcg ggaaaggctt gtgcggcttt
      541 ggcaatgctg tcttcgcgga tgaggtgcag cgtcggatag ggagaacggt tggtgtagtt
      601 gccgatgtcg tcgggttcgg tattctgaaa gcggaattgg ggatggaacg gtgcgatttg
      661 gacgatgcct tccaagccgt tttcgataac ggcggcatcg gcaatatcga gcatatcgtt
      721 gaatacgtcg aaatcgggga atagggtcgg gtgaaccagc agggtggttt ccagttcggt
      781 ggcgggtgta ttgcccagtc gctgcagttc ttcgtccaag tcttccaaaa aactgtcaag
      841 gtgtttggct tcgctgattg cgatgcggac aaggttttta acgtgggggg ctttggcaaa
      901 gggacacagg ttcagaccga tgacggcttt ttccaaccat tgtccggtgt gttcggcaac
      961 agcatcttta ttttcggaag tattgatatt cattattgtc atgtaaatgt gtttgcagat
     1021 tgcacgtgcg ggaaaatcgg gaagggcact attccttcag caggtggttg agcggcaggg
     1081 aggtggtgtg tttgatttct tttaaaacaa agctcgattg cgcatcttgt acgccgtggt
     1141 gggacaggag cgtatccaaa acaaaatggg aaaacgcgtt catatcggta aaaaacgcct
     1201 gaagcaggta gtcggtttcc cctgtcaggg cgaagcagct caagacttca ggccattttc
     1261 gaaccgatgc ggcaaagtct tcccgcgcgt cttttgcttt gcggatggaa acgcggataa
     1321 atgcctgaag ccccaggttg acggattccg gagacagcag cgcggcatat tggcggacga
     1381 tgccggcatc ttccaactgc ttcagacggc gcaggcacgg agaaggcgaa agtgcgacac
     1441 gttcggacag ttcgacattg gtcagcctgc cgttttcctg gagaacctgt aagattttaa
     1501 tatcggtttt gtctaaagtg agttggggca tatttgcgtt ccgttttaag gaattcggat
     1561 tgtctgtccg tatgtttgcg gcaatccgca cagatggaga ccatattaac atataaaaag
     1621 ttataccgtc atccgggaca aattttgttt tcggaaaatc atgtgaaaac agaggcggtc
     1681 ggtttgcatc tcttttaaga cggcttgccc aaaccgccga ttcaagacat aatcgggaaa
     1741 tgtgcaggag agtgttacac ccaactacaa tgtaaccacc gaaggcgcag acacccttaa
     1801 atcgctcagg tatcagggac tgcacattga aacaaacaat ctggagagcg gcgttggaat
     1861 aacgtccacc gaaggggaga aggccgtctg aaccaccatt cagacaaccg cgcaaagcag
     1921 tgagcagact ggtttgccat catgcggata cggccgaaaa tctcaggttc aaggacagat
     1981 agggtcatcc gcgcacaggt gcgcgggtgg catctgaaca aaaaatccgg agaaacttga
     2041 gaatgattac tctgaaaacc accccatttc atcaagccca tcaagatgca ggcgcgaagc
     2101 cggtagattt tgccggctgg gagctgccca tccattatgg ttcgcaaatc gccgaacacg
     2161 aagccgtgcg caccgacgcc ggtatgtttg acgtatccca tatgcttgtt accgacgtag
     2221 caggcgcaaa tgccaaagcc tttttccgca aattgattgc caacgatgtc gccaagctcg
     2281 cttttgtcgg caaagccctt tattccgctt tgctcaacga caacggcggc gtgattgacg
     2341 acttgatcgt ttaccgcacc aatgaagccg aaacccaata ccgcatcgtg tccaacggcg
     2401 cgactcgcga aaaagatacg gcacaattcc acaaagtcgg acaagagttc ggtgtttcct
     2461 tcaatccgcg ctacgacctc ggcatgctcg ccgtacaagg ccctaaagcc attgaaaaac
     2521 tcctgaccgt caaacccgaa tgggcagatg tcgtccataa cctcaaaccg ttccaaggcg
     2581 cggatttggg caacgactgg tttgtcgccc gcaccggcta caccggcgaa gacggcgtcg
     2641 aagtcatcct gcccggcacc gaagccgtcg cattcttcaa agccctgcaa gcagcaggcg
     2701 tacaaccttg cggtctcggc gcgcgcgaca ccctgcgcat ggaagccggc atgaacctct
     2761 acggcaacga tatggacgac gataccagcc cgctcgaagc aggcatgggt tggaccgttg
     2821 atttgaaaga cgaaagccgc gattttgtcg gcaaagctgc cttgttggca ttgaaagaaa
     2881 aaggcgttgc cgtcaaacag gtcggtttgc tgctcggcaa aggcggcatc ctgcgcgcgc
     2941 atatggaagt gttgaccgac aaaggcaaag gcgaaaccac cagcggcgta ttctctccaa
     3001 gtctgaaaca atccatcgcc atcgcccgcg taccgaacga ttttgacggc gataccgcca
     3061 aagtgctgat tcgcggcaag gaagcggacg tgcgcgtact gaagctgccg ttcgtccgca
     3121 acggtcaaaa acagtttgat taatatcggt tcagacggca ttttcatttc atatgccgtc
     3181 tgaaagcagg ttttaattgt cgtccgatac ggacgtttgt agaaagcatt gaacaaggca
     3241 tctgtggata ttgattcatg cagatgccgt ctgaaaataa ccccctatca atggagtatc
     3301 aaaccatgag cagcaacatc ccggcagaac tgaaatacgt tgccagccac gaatggctgc
     3361 gccttgaaga agacggtatc atcaccgtcg gtattaccca ccacgcgcaa gagctgttgg
     3421 gcgacatcgt gtttgtcgag ctgcctgaag tcggcgcaaa ccttgccgcc gaagaacaag
     3481 ccggtgtggt tgagtctgta aaagccgcgt ccgacgtgta cgcaccgatt gcaggtgaag
     3541 tcgttgccgt caacgaagat ttgccaagcg ctccggaaac tgccaacagc gatccttacg
     3601 gtgcaggctg gttcttcaaa ctcaaaccgg caaacgttgc cgattacgac gttctgctga
     3661 ctgccgaaca atacgcgggc gaagtggatt aaaccgcccg gctgcccgat ggcaaccgcc
     3721 ggacaaacgg aaactgcacc ttcagacggc atttttgcgg tcggaggtgc agttttttgt
     3781 ccgtgtttta aggaagcagt taggctataa taacggtcta tattcatctt taccgatttt
     3841 ttcatgcaac ttaccgctgt cggactcaat catcaaaccg cacctttaag catacgggaa
     3901 aagctggcgt ttgccgcggc ctgcctgccc gaagccgtcc gcaatcttgc ccgaagcaat
     3961 gcggcaacgg aggcggtaat cctttctacc tgcaaccgta ccgagcttta ctgtgtaggt
     4021 gattcggaag aaatcatccg ttggctcgca gactatcaca gccttcccat agaagaaatc
     4081 agcccctacc tttatacttt ggggatgcag gagactgtgc gccatgcttt ccgcgtcgcc
     4141 tgcggcttgg attcgatggt gttgggcgag ccgcagattt taggacagat taaggatgcg
     4201 gtcagggttg ctcaagagca ggaaagtatg ggtaagaaac tcaatgccct gttccaaaaa
     4261 accttttctg ttgctaaaga ggtccgtacc gatactgccg tcggcgaaaa ctcggtttcc
     4321 atggcttccg cttccgtcaa gttggcagag cagattttcc ccgacatcgg cgatttgaat
     4381 gtcttgttta tcggtgcggg tgagatgatt gagctggttg ccacttattt tgccgccaaa
     4441 agtccccggc tgatgacggt tgccaaccgg acgctggcgc gtgcacagga gttgtgcgac
     4501 aagctcggtg tcaacgccga accgtgcctg ctgtccgatc tgcctgccat tttgcatgag
     4561 tacgacgtgg tggtttcttc aacggcaagc cagttgccca ttgtcggcaa aggtatggtg
     4621 gagcgcgcat tgaaacaaag gcagagtatg ccgttgttta tgcttgactt ggccgtgccg
     4681 cgagacattg aggcggaagt cggagatttg aacgatgcct atctttatac ggtggacgat
     4741 atggtcaata tcgtccaaag cggcaaggag gcaaggcaga aggccgccgc cgccgccgaa
     4801 acgctggtgt ccgagaaggt tgccgaattt gtcaggcagc agcagggcag gcagagtgtc
     4861 ccgttaatca gggcattgag ggatgaggga gagaaagcgc gcaaacaggt cttggaaaat
     4921 gcgatgaaac agcttgccaa aggcgcaacg gcagaagagg ttttggaaag gctgtcgatc
     4981 caactgacca acaagctgct gcattcgccg acccaaacct tgaataaggc gggggaagaa
     5041 gataaagatt tggttcacgc cgtcgcgcag atttatcatt tggacaaata acggtgcgcc
     5101 ggaaaaggat gccgtctgaa ggggtttcag acggcatttt ttgtgcaggc cggcaacatc
     5161 gtgaaatccc acattatatc gatgtaatca caaagtatag tggattaaca aa
//
LOCUS       DAXIFS010000133         5203 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.133, whole genome shotgun sequence.
ACCESSION   DAXIFS010000133 DAXIFS010000000
VERSION     DAXIFS010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5203
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.133"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..1017)
                     /locus_tag="ACFOCA_001546"
     CDS             complement(<1..1017)
                     /locus_tag="ACFOCA_001546"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6988245.1"
                     /translation="MTISTMAQTHDTRLQKTLLFPSQQGWKSKTFLKPDSHIRLATVF
                     SGIGAVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDITQFDARKFRN
                     QVDILVGGSPCQAFSMVGKRAGLEDTRGTLFYEFSRVVDEVQPKIFIYENVKGLLNHD
                     NGKTWKVVKSVFYSLGYDLYFQIMNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIE
                     LEHTMQDFLEDYTDSKYFLREKGVKFVTSSKNRQKRYTQINGEIALCQKANQQFNWHG
                     DFIFQAARESEFDDFIFDVNNVEEKYYLSEKIKNYVLAGGTKNFKTSTETDLPVARPL
                     LQTMH"
     gene            complement(1054..2025)
                     /gene="hldA"
                     /locus_tag="ACFOCA_001547"
     CDS             complement(1054..2025)
                     /gene="hldA"
                     /locus_tag="ACFOCA_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose synthase"
                     /protein_id="HFC6988246.1"
                     /translation="MSAKFQQETLKSRFAQAKVLVVGDVMLDRYWFGDVSRISPEAPV
                     PVAKIGRIDQRAGGAANVARNIASLGGRAGLLSVTGNDEAADALDALMVQDGVASYLM
                     RDKQIATTVKLRVVARNQQLIRLDFEEHPNCEVLEQIKQKYREILPEYDAIIFSDYGK
                     GGLSHISDMIDWAKHAGKTVLIDPKGDDYEKYVGATLITPNRAELKEVVGSWKNESEL
                     TEKAQNLRRHLDLTAVLLTRSEEGMTLFSEGEPIYQPTRAQEVYDVSGAGDTVIAGMG
                     LGLAAGCTMPEAMYLANTAAGVVVAKLGTAVCSFAELIKALSGQSTM"
     gene            complement(2080..2820)
                     /gene="pyrF"
                     /locus_tag="ACFOCA_001548"
     CDS             complement(2080..2820)
                     /gene="pyrF"
                     /locus_tag="ACFOCA_001548"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003756133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HFC6988247.1"
                     /translation="MNPLISDFQTPQQRTPVIVALDFSNEKDTLGFVRNLDPTLCQIK
                     IGKELFTATGRNLAESLINQGFKLFLDLKYHDIPHTVAQACKVAADMGVWMVDMHASG
                     GRRMMEAAAEAVAGYGTKPLLIGVTVLTSMEQSDLAEIGLNTAPEEQVIRLAKLAQSS
                     GLDGVVCSAQEAAPLRRELGQDFVLVTPGIRLDVAGNNDDQRRIMTPAEALAAGSTYL
                     VMGRPVTQAADPVAVLREVNRVANLEAN"
     gene            complement(3346..3993)
                     /gene="adk"
                     /locus_tag="ACFOCA_001549"
     CDS             complement(3346..3993)
                     /gene="adk"
                     /locus_tag="ACFOCA_001549"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFC6988248.1"
                     /translation="MKALLLGAPGAGKGTQAQFITAAFGIPQISTGDMLRAAIKAGTP
                     LGLEAKKIIDEGGLVRDDIIIGMVKERIAQDDCKNGFLFDGFPRTLAQAEAMVEAGVD
                     LDAVVEIDVPDSVIVDRMSGRRVHLASGRTYHVTYNPPKVEGKDDVTGEDLIQRDDDK
                     EETVKKRLAVYHEQTEVLVDFYSKLEGEHAPKYIKVDGTQPVEAVKAEVLGALGK"
     gene            4208..5047
                     /gene="htpX"
                     /locus_tag="ACFOCA_001550"
     CDS             4208..5047
                     /gene="htpX"
                     /locus_tag="ACFOCA_001550"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HFC6988249.1"
                     /translation="MKRIFLFLATNIAVLVVINIVLAVLGINSRGGTGSLLAYSAVVG
                     FTGSIISLLMSKFIAKQSVGAEVIDTPRTEEEAWLLNTVEAQARQWNLKTPEVAIYHS
                     PEPNAFATGASRNSSLIAVSTGLLDHMTRDEVEAVLAHEMAHVGNGDMVTLTLIQGVV
                     NTFVVFLSRIIANLIARNNDGSQSQGTYFLVSMVFQILFGFLASLIVMWFSRQREYRA
                     DAGAAKLVGAPKMISALQRLKGNPVDLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARL
                     KSL"
BASE COUNT         1257 a         1319 c         1229 g         1398 t
ORIGIN      
        1 atgcatagtt tgcaataatg ggcgagctac aggcaaatca gtttccgtac tggttttaaa
       61 attttttgtt cctcctgcca aaacataatt tttgattttt tcagaaagat aatatttttc
      121 ctcaacgtta tttacatcaa aaataaagtc atcaaattca gattcgcggg ctgcctgaaa
      181 aataaaatca ccatgccaat taaattgttg atttgctttt tggcataagg caatttctcc
      241 attaatctgt gtataacgtt tttgtctatt tttagaactg gtaacaaatt tcacaccctt
      301 ttcacgtaaa aaatatttgc tatcagtata gtcctccaaa aaatcttgca tagtatgttc
      361 taattcaatc ttttcaggaa actgaaaacc atttatagga ggggtatgaa agccaacaac
      421 aaaaatacgc tcacgatgtt gaggaatccc ataatcctta ctattcatta tttggaaata
      481 taagtcataa ccaagtgaat aaaaaacact ttttacaact ttccaagttt ttccattatc
      541 atgattgagc aagcccttta cattttcata aataaatatc tttggttgga cttcatccac
      601 aacgcgagaa aattcataga ataatgttcc tcgtgtatct tctaatcctg cacgtttgcc
      661 aaccatggaa aatgcttggc aaggactgcc tccaactaaa atatcaactt gatttctaaa
      721 ctttctcgca tcaaattgag taatgtcgtt atgccaaaaa tcttcattta atttatagtt
      781 tccaagataa ctttttttaa cgtatggatc aatatctcct gcaaaaacaa tggtatggtt
      841 taaatttaat cggtggaatg cctgttcaac cgcaccaatc ccgctgaata cggttgctaa
      901 tctaatatgt gaatcaggtt taagaaaagt tttagatttc caaccttgtt gactgggaaa
      961 gagcaaagtt ttttgtaatc gagtatcgtg tgtctgtgcc attgtcgaaa tagtcatact
     1021 tatatcgttc tgtttatctt atcaatatga aaactacatt gttgattgcc ctgacaatgc
     1081 cttgatcaat tcggcaaacg agcaaaccgc cgtaccgagt ttcgccacga caaccccggc
     1141 cgcagtattg gcaaggtaca tggcttcggg catggtgcag cctgccgcca aacccaagcc
     1201 cattccggca atgacggtgt cacccgcacc ggatacgtcg taaacttctt gggcgcgggt
     1261 gggctggtaa atcggttcgc cttcgctgaa caaggtcatg ccttcttcgc ttcgggtcag
     1321 taaaacggcg gtcaggtcga ggtggcggcg caggttttgc gctttttcgg tcagctcgct
     1381 ttcgtttttc caactgccga ccacttcttt caattcggcg cggttaggcg taatcagagt
     1441 tgcaccgaca tatttttcgt aatcgtcgcc tttggggtcg attaagacgg ttttgccggc
     1501 gtgtttcgcc caatcgatca tatcggagat atgcgacagg ccgcctttgc cgtagtctga
     1561 aaaaatgatt gcgtcgtatt cgggcaagat ttcgcggtat ttctgcttga tttgttccaa
     1621 cacttcgcag ttgggatgtt cttcaaaatc aagacggata agctgctggt tgcgggcgac
     1681 gacgcgcagt ttgacggtgg tggcgatttg tttgtcgcgc atcagatagg aggcgacgcc
     1741 gtcctgcacc atcagcgcat cgagcgcgtc ggcggcttcg tcgttgccgg ttacggacaa
     1801 cagccctgcc ctgccgccca acgaagcgat gttgcgcgcg acatttgccg ctccgcccgc
     1861 gcgttggtcg attcgtccga ttttcgccac cggcacgggg gcttcgggcg aaatacggga
     1921 cacatcgccg aaccaataac ggtcgagcat cacgtcgccg acaaccagga ctttggcttg
     1981 cgcgaaacgg gatttgaggg tttcttgttg gaacttggcg gacatattgc ctccgttgta
     2041 ttttttcaga cggcctcagc ctgtaaggcc gtctgaaaat cagtttgctt caaggtttgc
     2101 cacgcggttc acttcgcgca atacggctac cggatcggca gcttgggtta caggacgacc
     2161 cattaccaaa taagtcgaac cggcagccaa ggcttcggcc ggtgtcatga tgcggcgctg
     2221 gtcatcatta ttgccggcaa cgtccaagcg gatgccgggc gtgaccaaga caaaatcctg
     2281 tcccaattcg cggcgcagcg gcgcggcttc ttgggcggaa cagaccacgc cgtccaagcc
     2341 cgaactttgc gccagttttg ccaagcggat gacttgttct tcaggggcgg tgttcaaacc
     2401 gatttccgcc aaatcgcttt gttccatgct ggtcaacacg gttacgccga ttaagagcgg
     2461 cttcgtgccg tatccggcaa cggcttctgc tgcggcttcc atcatacggc ggccgcccga
     2521 tgcgtgcata tcgaccatcc aaacgcccat atcggcagcg actttgcagg cttgcgcgac
     2581 ggtgtgggga atatcgtggt atttcaaatc gaggaaaagt ttgaaacctt gattgattaa
     2641 gctttctgcc aaattgcgtc ccgtcgcggt aaacagctct ttgccgattt tgatttgaca
     2701 caatgtcggg tcaaggttgc ggacgaatcc gagcgtgtct ttttcgttgg aaaaatcaag
     2761 ggcgacgata acgggggtgc gttgttgcgg agtttggaag tcggagatta aaggattcat
     2821 ggtgttttcg tttcgggttt tcagacgacc tttatcgtct ttttcgcagt atagtggatt
     2881 aactttaaac cggtacggcg ttgtctcgcc ttagttcaaa gagaacgctt ctctaaggtg
     2941 ctgaagcaca aagtgaatcg gttccgtact atctgtactg cctgcggctt cgtcgccttg
     3001 tcctgatttt tgttaatcca ctataacaac gtaaattcaa accgtaggtc gggcattgat
     3061 gtccgaccta cgcgaactca agcctccgac aaactgtttc ggataaattt gaaccggtac
     3121 atcagccgtc attcccgcgc aggcgggaat ccattgataa aactcagttc atcagattta
     3181 aacagcgatt gcccaaattc agaaatggat tcccgcctgc gcgggaatga cgccaaatga
     3241 ttatttttcg gttgcaacac gctgtttatc aaaaacaggt cgtctgaaaa cctgattttc
     3301 tgttttcaga gtgcgaagcc tgcccgtggg tacgaccttt tcgatttatt tgcccaatgc
     3361 gcccaatact tcggctttca cggcttctac cggctgagtg ccgtcaactt tgatgtattt
     3421 aggcgcgtgt tcgccttcca gtttgctgta aaaatcgacc aaaacttcgg tttgctcgtg
     3481 gtaaacggca aggcgttttt tcacggtttc ttctttgtcg tcgtcgcgct gaatcaaatc
     3541 ttcgccggtt acgtcgtctt tgccttcaac tttgggcggg ttgtaggtaa cgtggtaagt
     3601 acggccggaa gccaaatgca cgcggcggcc gctcatacgg tcgacaatca cgctgtcagg
     3661 cacgtcgatt tcaacgactg catccaaatc cacgcctgct tcaaccatcg cttcggcttg
     3721 tgccaatgtg cgcgggaaac cgtcgaacag gaaaccgttt ttgcagtcgt cttgcgcgat
     3781 gcgttctttg accatgccga taatgatgtc gtcgcgcacc aagccgcctt cgtcaatgat
     3841 ttttttcgct tccaaaccca agggcgtgcc agccttaatc gcggcgcgga gcatgtcgcc
     3901 ggtagagatt tgcggaatgc cgaacgcggc ggtgatgaat tgcgcctgag tgcctttgcc
     3961 cgcgcccggc gcgcctaaaa gtaatgcttt catgaagtga tcctttgaaa tgtgtttatt
     4021 ggaatcaaac agatggttta cgattctaca cggcttggca caatagttca aaaaccaact
     4081 gcacaaactg ccatttgcaa gcaaatgttt tgcatacctt tgccgagtct gatattcaca
     4141 agccggcaac tttttgggac aatccccaaa atttcaaaac atcacaccct accaaaaagg
     4201 aacatccgtg aaacgaattt ttctgttttt ggctaccaat atcgctgttt tggtcgtaat
     4261 caacattgtt ttggcggttt tgggcatcaa cagccggggc ggcacgggca gcctgttggc
     4321 gtattccgcc gtcgtcggct tcactggttc gattatttcg ctgctgatgt ccaaattcat
     4381 cgccaaacaa tcggtcggcg cggaagttat cgacacgccg cgcaccgaag aagaagcctg
     4441 gcttttgaac actgtcgaag cccaagcgcg gcaatggaac ctgaaaacgc ccgaagtcgc
     4501 catctaccac tcccccgaac ccaatgcctt tgccacgggc gcatcgagaa acagctccct
     4561 gatcgccgtc agcaccggtt tgctcgacca tatgacgcgc gacgaagtgg aagccgtatt
     4621 ggcgcacgaa atggcacacg tcggcaacgg cgatatggtt acgctgacgc tgattcaagg
     4681 cgtggtcaat accttcgtcg tgttcctgtc gcgcattatt gccaacctga ttgcccgaaa
     4741 caacgacggc agccagtccc agggaactta tttcctggtc agcatggtat tccaaatcct
     4801 attcggcttc cttgccagct taattgtcat gtggttcagc cgacaacgcg aataccgcgc
     4861 cgacgcgggc gcggcaaaac tggtcggcgc accgaaaatg atttccgccc tgcaaaggct
     4921 taaaggcaac ccggtcgatt tgcccgaaga aatgaacgca atgggcatcg ccggagatac
     4981 gcgcgactcc ctgctcagca cccacccttc gctggacaac cgaatcgccc gcctcaaatc
     5041 gctctgagcc gatttgaaac aacaaaaaaa ccgtacgcgc aagcagtacg gttttttgta
     5101 tatgctgtct gaaaacatca ggtttccata ccaacaccaa ccgtatccat ttccgcaccg
     5161 gatacgccgc attgatatac cctgataaac cgtgtccgga cag
//
LOCUS       DAXIFS010000134         5128 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.134, whole genome shotgun sequence.
ACCESSION   DAXIFS010000134 DAXIFS010000000
VERSION     DAXIFS010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5128
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.134"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(135..404)
                     /gene="rpsO"
                     /locus_tag="ACFOCA_001551"
     CDS             complement(135..404)
                     /gene="rpsO"
                     /locus_tag="ACFOCA_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFC6988250.1"
                     /translation="MALTVEQKAQIVKDFQRKEGDTGSSEVQVALLTFRINDLTPHFK
                     ANPKDHHSRRGLLKMVSQRRRLLAYLRRTQPDTYRALITRLGLRK"
     gene            complement(627..1562)
                     /gene="secF"
                     /locus_tag="ACFOCA_001552"
     CDS             complement(627..1562)
                     /gene="secF"
                     /locus_tag="ACFOCA_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFC6988251.1"
                     /translation="MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVE
                     FTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQL
                     SNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
                     AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRK
                     PAMRGHAVPEVIDNAITATMSRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVF
                     GIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV"
     gene            complement(1566..3419)
                     /gene="secD"
                     /locus_tag="ACFOCA_001553"
     CDS             complement(1566..3419)
                     /gene="secD"
                     /locus_tag="ACFOCA_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFC6988252.1"
                     /translation="MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAII
                     INEQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITA
                     LNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
                     EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVN
                     KVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTAT
                     LELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSF
                     DQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGR
                     VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI
                     VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNV
                     LINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAV
                     VHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE"
     gene            complement(3631..3897)
                     /gene="yajC"
                     /locus_tag="ACFOCA_001554"
     CDS             complement(3631..3897)
                     /gene="yajC"
                     /locus_tag="ACFOCA_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFC6988253.1"
                     /translation="MNQAVAQFAPLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGD
                     KVVLAAGFKGKVTRVGEQFFTVDIGQGTKIEVEVERNAIAAKVD"
     gene            4025..>5128
                     /locus_tag="ACFOCA_001555"
     CDS             4025..>5128
                     /locus_tag="ACFOCA_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HFC6988254.1"
                     /translation="MSLTRLILKFYALLRLFLGKNARTAWISHPACAGHEPGANHPDS
                     PDRILCIEQALRRAGIWQHLQTIEAEEISDTRLALVHSSKYLNRLESCLPQKGKIFRL
                     DNDTAISTGSLSAAHFAAGSAVQAVDMVMNRKAWHAFCAARPPGHHAGSGKAGGFCLL
                     NNVAAGVMHAIAEYRLKRIAVIDFDVHYGDGTAEIFKDDPRILFFNLFETDLFPFPEN
                     NDMPDGGNMVHLPLPPGTGSRTFREAVRRQWLPRLAAFKPELVLLSAGFDAHRLDESG
                     RLNLHEADFAWLTHKIIQTASGCPGKIVSVLEGGYTLEPLAQSAAEHIRVLAGLGKSD
                     AATAYQKTLDPTKKRFAKPKTGQVRQPTQSDRYD"
BASE COUNT         1268 a         1429 c         1266 g         1165 t
ORIGIN      
        1 atttgtactg tctgcggctt cgtcgccttg tcctgattta aatttaatcc actataaata
       61 tggatttgag cttgtcggaa agcaacagaa aagaaaacac cgcccatttt tctgggcggt
      121 gtcggaaagc gtaattattt acgcagaccc aagcgggtaa tcaacgcgcg atacgtatcg
      181 ggctgggtac ggcgcaagta ggccagcagg cggcggcgtt ggctgaccat tttcaacagg
      241 ccgcgacggc tgtggtggtc tttggggttg gctttgaagt ggggggtcag gtcgttgatg
      301 cggaaagtca acagagcgac ttgtacttcg gaagagccgg tgtcgccttc tttgcgttgg
      361 aaatctttaa cgatttgtgc tttttgttct acggtcagtg ccataatgaa aactccaaaa
      421 atataagaat ccccataggg attcagacaa gtttgccaag cctgaagaca acggcaaact
      481 ccctatgccc aagataggac aacgtggcat tatgacacaa ttcccgcatt tctgcacaat
      541 attttaagac cgtggaagta accgttaaaa atgccgtctg aagcattgtc tgcttgagac
      601 ggcaatgttc agacggcata tgcgcttcaa accacgattt cttctttctt cttcggttct
      661 ttaccgatat tgtcgcggct caaaccgaac attagcagaa gcgggctggc aaccaatacg
      721 gaagaataaa tgccgaacac gatgccaatg gtcaacgcca tagaaaagcc gtgcaaggcc
      781 gcaccgccga acaccagcat agaaacaacc atcgcctcgg tcgaaccgtg ggtaatgatg
      841 gtgcggctca tcgttgcggt aatcgcgttg tcgatgactt ccggcacggc atgtccgcgc
      901 atcgccggct tgcggaagtt ttcacggata cggtcgaaga cgacgacgga ttcgttcaca
      961 gaatagccca atacggcaag gatacccgcc aagacggtca gcgaaaattc ccattggaag
     1021 aaggcaaagc agccgagaat aatcacgatg tcgtgcatat tggcgataat ggcagatacg
     1081 gcaaaacgcc attcaaaacg catcgacagg taaataatga tgccgataac gacaaaacct
     1141 aaagccatca atccattact taccaattcc tcaccgactt gcgggccgat aaattcgact
     1201 tggcgcaagg taacgtcggg actgtctttt ttcagcaaat ccataacctg attggacaac
     1261 tgtgcggaag taacaccttc tttgttcggc aggcggatca tgatgtgttt gttcgtaccc
     1321 aatgcctgaa cctgtacatc acctattttc agcgtatcga ggcgttcgcg catcttattg
     1381 acatccgcac cctgctgata ttggacttcc attaccgtac cgccggtaaa ttcgacagag
     1441 aaattcaggc ctttggtcac caagaagaac acggcagcga taaacgtaac caacgaaatg
     1501 aaggtcgtca gtttgccgta gctcataaac ggaatatcgc gtttgatttt aaagagttcc
     1561 atagcttact ccttacctgc cgcagtttcg gcttcaggtt tccataccgc accgatggaa
     1621 atattctgca atttgcgtct gcgtccgtac cacagattga ccaacgcacg gaatacgacg
     1681 acggacgaat acatcgaagt cagaataccc aaacagtgta cgaccgcaaa accgcgtacc
     1741 gggccggaac cgaataccaa aagcgcgata ccggcaatca gcgaagtcag gttggaatcg
     1801 acaatggtcg cccatgcgtg ttggaaaccg agattgattg cctgctgcgg cggcacgccg
     1861 acacgcaatt cttcgcggat acgttcgtta atcaagacgt tggagtcgat tgccataccc
     1921 aaagtcaacg ccagcgcggc catacccggt aacgtcaacg ttgcctgcat agcagacaaa
     1981 ataccgatta ggaacagtat gttggcactc aatgcaatgg tagaaaagaa acccatcaga
     2041 cgatagtaaa ccaccatgaa tgcagcaacg atggcaaaac cccataaagt cgaatggaag
     2101 cctttttcga tgttctcctt acccaaagac ggaccgatgg tacgttcttc gacaatctgc
     2161 atcggcgcgg caagagaacc ggcacgcaac agcaaagacg tatcattggc ttcggctgtc
     2221 gtcatgcttc cggaaatttc cacgcgtccg ccggtaatgg cagtacggat aaccggcgcg
     2281 gttacaacct cggattttcc ttggtcgatc aaaaccatcg ccatgcgttt gccgacattt
     2341 gcggcagtca gttcgccgaa aatgctgccg cccgcgctgt ccaagctcag actgacggca
     2401 ggtgcgccca tttggtcgaa actcggttgc gcatcgttga tgttgtcgcc cgtcagctcg
     2461 acctgtttgc tgattagcag agtttcggga cgatctccgc cgcttgaaag cagctcataa
     2521 ccgctcggca cgttgccttc caatgcctcg cgcaacttgg caggatcgtc ctccaccata
     2581 cgcaattcca aagtcgcggt acggccgatg atgtcttttg ccttggcagt atcctgaacg
     2641 cccggaagct gcacgacgat acggtctgca cctgactgct ggatgacggg ttcggccacg
     2701 cccaactcgt tcacacggtt gtgcagggta gtgatgttct gtttgaccgc atcggaacgc
     2761 actttattaa ccgcctcttc cgaaagcgtc aagacgatat tgctgccgtc tgaattcagc
     2821 gttgcttcag gaaacagctt gcgcaactgc ggcagtgcct tttgcacatc acctgcatcc
     2881 tgcaaaggga cggtcaggct gtttccagcc tgacgcaccg tgccgctgcg gattttttcg
     2941 cggcgcagtt cgcggcggat gtcgcccgaa taacgttcaa acgttttctg catcgccgct
     3001 ttcatatcga cctgcatggt gaaatgcacg ccgccgcgca agtccaaacc caaaaacatc
     3061 ggattggctt tgattttcgc catccattcg gggctgtccg ccaacaggtt gagcgcggta
     3121 atataccctt cgcccaaagt gttttcgatg acgtcgcgcg ctttaagctg cgtttcggtg
     3181 tctttgaaac gcactttcag tgaattgtcc acaacaaaca tcccgtcggt ctgaataccc
     3241 gcgttttgca gcgcggcatc cactttggat tgagtctgtt cgttgatgat gatggcttgt
     3301 cggttggtcg atacctgcac ggcgggtgtt tcgccgaata ggttgggcag cgaatacact
     3361 gcggcaaccg caatcgtgaa cacaatcagc agatatttcc ataaaggata acggttcatc
     3421 attgttcctt aatggttgga accccaccct ttcggtggtg tcggaatcgg gctatttcag
     3481 aagaggcaaa aacccttccc agccaggcaa gaccggaagg cggcatcttg aatatgccgc
     3541 cctgcgtgtc ggaacatggt caagccttcg gttggaattc aaaacaaagt gccgcattcg
     3601 ggctttccag atgcggcttg tcggcacaaa tcaatcgact tttgcggcaa tcgcattgcg
     3661 ttctacttcg acctcgattt ttgtaccctg tccgatatcc acggtaaaaa actgttcgcc
     3721 gactctggtt accttaccct tgaaacctgc cgccaagacc actttgtcgc cgactttcaa
     3781 ggcggcaagc attgcctgat gcgctttgaa tttcttttgc tgcggacgca tgatcaggaa
     3841 gtagaacacc accataatca acactaaagg agcaaattgt gcaacagctt gattcataat
     3901 ttatccgttc tttctaatat ggttgaaaat cgagaggggt atataataac ataagaccgt
     3961 aaacaatata tcgggtttgc cgtccgtacc gaccgtatac cgcagcctgc ccgtccacaa
     4021 acccatgtcc ttgacccgcc taatcttgaa attctatgca ctgttgcgcc tttttttggg
     4081 caaaaacgcc cgcaccgcat ggatttcgca tcccgcctgt gccgggcacg aacccggcgc
     4141 aaaccatccc gattcgcccg accgcatcct ctgcatcgag caggcattgc gccgcgccgg
     4201 tatttggcag cacctccaaa ccatagaggc ggaagaaatc agcgatacgc gcctcgcact
     4261 tgtccactcg agcaaatatc tgaaccgttt ggaatcttgc ctgccccaaa aaggcaagat
     4321 tttccgcctg gataacgaca ctgcaatcag cacaggctcg ctgtctgccg cacactttgc
     4381 cgccggttcg gcagttcagg cagtcgacat ggtcatgaac cgtaaagcat ggcatgcctt
     4441 ttgcgccgcc cgcccgcccg gacaccatgc gggcagcggc aaagccggcg gattctgcct
     4501 gctgaacaac gttgccgccg gcgtcatgca tgccattgcc gaataccgcc tgaaacgcat
     4561 tgccgtcatc gatttcgatg tccactacgg cgacggtacg gcagaaatat tcaaagacga
     4621 tccgcgcatc ctgtttttca acctgtttga aaccgacctt ttccccttcc ccgaaaacaa
     4681 cgatatgccc gacggcggca atatggtgca cctgcccttg ccgccgggaa cgggcagccg
     4741 cacattccgc gaagccgtcc gcaggcagtg gctgccccgg cttgccgcat tcaaacccga
     4801 actggtgctg ctgtcggcag gattcgacgc acaccgtcta gacgaatcgg gcaggctcaa
     4861 cctgcacgag gcggattttg cctggctgac acacaaaatc attcagacgg catcgggctg
     4921 ccccggcaaa atcgtatccg tactcgaagg cggctacacc cttgaacctc tggcacaatc
     4981 tgctgccgag catatccgcg tgctggcggg gctgggcaaa tccgatgccg caaccgccta
     5041 tcagaaaaca ctggatccaa caaaaaaacg gtttgccaaa ccgaaaaccg gacaggtgcg
     5101 ccaacctacc caatccgacc gttacgac
//
LOCUS       DAXIFS010000135         5000 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.135, whole genome shotgun sequence.
ACCESSION   DAXIFS010000135 DAXIFS010000000
VERSION     DAXIFS010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.135"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            27..1364
                     /locus_tag="ACFOCA_001556"
     CDS             27..1364
                     /locus_tag="ACFOCA_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6988255.1"
                     /translation="MSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFL
                     LFLIFTVLVALPVQLAEFYIGRTGGQNAVDSFRALRPSTQWLWVGRMGVSACFILLSF
                     YSVVGGWVLNYVVHSFTGAVHTGADFEALFGATISNPAGSLSYQALFMLITVWVVKGG
                     ISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTMITALG
                     QAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFE
                     PSQGPGLIFIVLPAVFMKMPFGTVLFAVFMLLVVFATLTSAFSMLETVIASTIRQDER
                     KRKKHTWLIGTAIFIVGIPSALSFGIWGEFKVFGKTIFDLWDYVISAVIMPVGALGVA
                     VFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFVNSLDIL"
     gene            complement(1599..2196)
                     /locus_tag="ACFOCA_001557"
                     /pseudo
     CDS             complement(1599..2196)
                     /locus_tag="ACFOCA_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222110.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
     gene            complement(2205..2999)
                     /locus_tag="ACFOCA_001558"
     CDS             complement(2205..2999)
                     /locus_tag="ACFOCA_001558"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HFC6988256.1"
                     /translation="MKAYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPL
                     LTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDEWADENGDLGPVYGYQWRNWP
                     APDGRHIDQIANVVEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAAL
                     QLEREPRALPVMKINPEVKDLFSFKFEDFELEGYDPHPHIKAAVSV"
     gene            3383..4717
                     /gene="gdhA"
                     /locus_tag="ACFOCA_001559"
     CDS             3383..4717
                     /gene="gdhA"
                     /locus_tag="ACFOCA_001559"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HFC6988257.1"
                     /translation="MTDLNTLFANLKQRNPNQEPFHQAVEEVFMSLDPFLAKNPKYTQ
                     QSLLERIVEPERVVMFRVTWQDDKGQVQVNRGYRVQMSSAIGPYKGGLRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELYRHIGADTD
                     VPAGDIGVGGREIGYLFGQYKKIRNEFSSVLTGKGLEWGGSLIRPEATGYGCVYFAQA
                     MLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFPDSGMTEAQ
                     LAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCATQNELDEEAAKTLL
                     ANGCYVVAEGANMPSTLGAVEQFIKAGILYAPGKASNAGGVATSGLEMSQNAIRLSWT
                     REEVDQRLFGIMQSIHESCLKYGKVGDTVNYVNGANIAGFVKVADAMLAQGF"
BASE COUNT         1215 a         1311 c         1234 g         1240 t
ORIGIN      
        1 tatcttcaca tttcttaata aattttatga gtaaccatac ttcttggtcg tccaaaatcg
       61 gtttcgtgct tgctgcggca ggttcggcca tcggtttggg cgcgatttgg aaatttcctt
      121 atacggcagg caccaacggc ggcgcggtgt ttttcctgct gtttttgata tttaccgtct
      181 tggtcgccct gcccgtccag cttgccgagt tttatatcgg gcgcacaggc ggtcaaaacg
      241 ccgtcgattc cttcagggct ctgcgtccga gtacgcaatg gctttgggtc gggcgcatgg
      301 gcgtttccgc ctgctttatt ttgctgtcgt tttacagcgt ggtcggcgga tgggtattaa
      361 attatgtcgt ccacagtttc acgggggcgg ttcataccgg cgcggacttt gaagccttgt
      421 tcggcgcgac gatttccaat ccggcaggtt cgctgtccta tcaggcactg tttatgctga
      481 ttacggtctg ggtggtcaaa ggcggcattt cagacggcat tgaaaaggca aaccgttatc
      541 tgatgccggg gctgtttatc ctctttattg cgctggcaat ccgttcgctg acgctgccgg
      601 gtgcaatgga gggcgtgtct ttcctgctca aaccgaattg gtcgtacttt aaagccgata
      661 cgatgattac ggctttaggc caggcgtttt ttgccttgag catcggcgtt tccgctatga
      721 ttacctatgc ttcgtatttg ggaaaagatc aggatatgtt ccgctcgggg catacgatta
      781 tgtggatgaa cctcttggtt tcgctgttgg caggtttggt gatttttccg gcggtgttcg
      841 ccttcggttt tgaaccgagc caggggccgg gattgatttt tatcgtattg ccggcagtgt
      901 ttatgaagat gccgttcggt acggttttgt ttgcggtatt tatgctgctg gtcgttttcg
      961 ccacgctgac ttcggcgttt tcgatgttgg aaacggtcat tgcctcaacc atccgccaag
     1021 acgagcgcaa acgcaaaaaa cacacttggc ttatcggcac ggctattttc attgtcggca
     1081 tcccgtccgc gctgtctttc ggcatctggg gtgagtttaa ggttttcggc aaaaccattt
     1141 ttgatttgtg ggactatgtt atttccgccg tcattatgcc tgtcggcgcg ttgggcgttg
     1201 ccgtatttac cgcctggatt caggacaagc agtctgtgtt aaaagatgcc ggcgcgggca
     1261 gcaccgtacc acgggcagtg ctgctgctgt ggctgaatac cttgcgctac ctcgccccga
     1321 ttgccattat tattgttttc gtcaattctt tggacatcct ttaaaagcca tccaaacagc
     1381 aaaaatgccg tctgaaagcc tttcagacgg catttttgct tcaggttcag cctatttcgt
     1441 tcaaagtata gtggattaac aaaaatcagg acaaggcgac gaagccgcag acagtacaaa
     1501 tagtacagaa ccgattcact tggtgcttca gcaccttaga gaatcgttct ctttgagcta
     1561 aggcgaggca acgccgtact ggtttttgtt aatccactat agacttgcgc gatgccgttc
     1621 aaggacaaac ccataccctt ttcggcaaaa cggatttcac ggtcgtcaaa cgagactttg
     1681 ccgaagccga cccgtttcag ggcttccttc acgctgtttt gaggaggcgg cgtttccgca
     1741 tcgggacggg cggcaaaata atcggcatac agtttccaca acgcctgcac tgtcggatcg
     1801 aacgcgccgt ccgtcagcgc gtgaatatcg cggcacaggc tcaacagttc caaaaaatcc
     1861 gccgacggcg aagtcagata accgtccctg ttcaggcggc tgatcaggct gtcttcacgg
     1921 taaaggctga acaatttttt ccaaacgcgc cacttccgcc aaaaccttgt tgaccaaatc
     1981 cgccgcctgt ctgtcgtcca caccgaacag gcgcagctcc gcaccggaac ccagcgcgac
     2041 acctttccag aagaacacat tttcattgcg tttttcatct ttattgcgtt tttcatcatc
     2101 ggcggcaaaa ggattcggca ggaaagaaac cgccgcgccc gccgccgcaa cggcggcaac
     2161 tgtcaaaaaa cgcctgcgcc cgaaatgcct gcccataccg cctcctaaac cgacactgcc
     2221 gccttgatgt gcggatgggg gtcgtaacct tccaactcga aatcttcaaa cttgaaggaa
     2281 aacaaatctt tgacttcagg attgattttc atcactggca aggcgcgcgg ttcgcgttcc
     2341 aactgcaatg cggcctgctc gaaatggttg cggtacaaat gcgcgtcgcc aaacgtatgg
     2401 acaaactcgc ccgcctccaa tccgcacact tgcgccatca tcatggtcaa caatgcgtag
     2461 ctggcaatat taaacggcac accaaggaaa atatctgcac tacgctggta aagctggcag
     2521 gacagtttgc cgtcggcaac gtaaaactga aacagcgcgt ggcagggcgg caaggccatt
     2581 tcgtcgacca aagccggatt ccacgccgat acaatcaggc ggcgcgagtc ggggtttttc
     2641 ttaatttgtt ccaccacatt ggcgatttgg tcgatatgcc tgccgtcggg cgcgggccag
     2701 ttacgccact ggtagccgta aaccgggccc aagtcgccgt tttcgtccgc ccactcgtcc
     2761 caaatggaaa cattgttgtc ctttaggtat ttgatattgg tatcgccttt gagaaaccaa
     2821 agcagctcgt ggataatcga acgcagatgc agctttttgg tcgtcagcag cggaaaacct
     2881 ttgcccaagt caaaacgcat ctgataaccg aatacggagc gcgtgcccgt accggtgcgg
     2941 tctgatttgt ccgtaccgtt gtcgaggacg tggcgcatca agtccaaata ggctttcata
     3001 gcagtctttc atcaaattaa acggcgcata ttgtaacatt tccggataat gcccaaaaca
     3061 cggatacaga caggcaggat tgttggcaat ttcagtcctt ttccacagta aaacccggtg
     3121 ggaaaacaaa attaccttga ttggaatcaa aaaatctagt ttaattactt agaataaaat
     3181 ttcaataata tttttattta cgaaattaat ttatgattat tgattaatta tcggcaacaa
     3241 acatcaaaca tcgaaaacat ggaaaaaata atgtcaacaa tttttgccaa atcgggcttg
     3301 gcatcagaaa aaaataggtt tatattccca cctacaaatt tgttttccca ttagtacact
     3361 atcaaccaaa aggagtatcc gaatgactga cctgaacacc ctgtttgcca acctcaaaca
     3421 acgcaatccc aatcaggagc cgttccatca ggcggttgaa gaagtcttca tgagtctcga
     3481 tccgtttttg gcaaaaaatc cgaaatacac ccagcaaagc ctgctggaac gcatcgtcga
     3541 acccgaacgc gtcgtcatgt tccgcgtaac ctggcaggac gataaagggc aagtccaagt
     3601 caaccggggc taccgcgtgc aaatgagttc cgccatcggt ccttacaaag gcggcctgcg
     3661 cttccatccg accgtcgatt tgggcgtatt gaaattcctc gcttttgaac aagtgttcaa
     3721 aaacgccttg accaccctgc ctatgggcgg cggcaaaggc ggttccgact tcgaccccaa
     3781 aggcaaatcc gatgccgaag taatgcgctt ctgccaagcc tttatgaccg aactctaccg
     3841 ccacatcggc gcggacaccg acgttccggc cggcgacatc ggcgtaggcg gacgcgaaat
     3901 cggctatctg ttcggacaat acaaaaaaat ccgcaacgag ttttcttccg tcctgaccgg
     3961 caaaggtttg gaatggggcg gcagcctcat ccgtcccgaa gcgaccggct acggctgcgt
     4021 ctatttcgcc caagcgatgc tgcaaacccg caacgatagt tttgaaggca aacgcgtcct
     4081 gatttccggt tccggcaacg tggcgcaata cgccgccgaa aaagccatcc aactgggcgc
     4141 gaaagtgctg accgtttccg actccaacgg cttcgtcctc ttccccgaca gcggtatgac
     4201 cgaagcgcaa ctcgccgcct tgatcgaatt gaaagaagtc cgccgcgaac gcgttgccac
     4261 ctacgccaaa gagcaaggtc tgcaatactt tgaaaaccaa aaaccgtggg gcgtcgccgc
     4321 cgaaatcgcc ctgccctgcg cgacccagaa cgaattggac gaagaagccg ccaaaaccct
     4381 gttggcaaac ggctgctacg tcgttgccga aggtgcgaat atgccgtcga ctttgggcgc
     4441 ggtcgagcaa tttatcaaag ccggcatcct ctacgccccg ggaaaagcct ccaatgccgg
     4501 cggcgtagca acttcaggtt tggaaatgag ccaaaacgcc atccgcctgt cttggactcg
     4561 tgaagaagtc gaccaacgcc tgttcggcat catgcaaagc atccacgaat cctgtctgaa
     4621 atacggcaaa gtcggcgaca cagtaaacta cgtcaatggt gcgaacattg ccggtttcgt
     4681 caaagttgcc gatgcgatgc tggcgcaagg cttctaagca aacgccgccg ctccgcaaac
     4741 aaaatgccgt ccgaaccgca aatgctgttc agacggcatt tcattatccg cccgttcgaa
     4801 tcgggtgata ctatttgtat ccagaattgt tggatagttt gggagtggag aggaagaaat
     4861 gattatggac caatactata tggagttaaa gaataagtta tctaacagac caatcctact
     4921 ggataatact aatgattttc tttttgtttt agtaaataca gtgaaagcta tgatagaaaa
     4981 tactgataaa agtcagcttt
//
LOCUS       DAXIFS010000136         4944 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.136, whole genome shotgun sequence.
ACCESSION   DAXIFS010000136 DAXIFS010000000
VERSION     DAXIFS010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.136"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(190..1059)
                     /locus_tag="ACFOCA_001560"
     CDS             complement(190..1059)
                     /locus_tag="ACFOCA_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HFC6988258.1"
                     /translation="MKFIFFVLYVLQFLPFALLHKLADLTGLLAYLLVKHRRRIGEIN
                     LAKCFPEWDGKKRETVLKQHFKHMAKLMLEYGLYWYAPAGRLKSLVRYRNKHYLDDAL
                     AAGGKVIILYPHFTAFEMAVYALNQDVPLISMYSHQKNKILDEQILKGRNRYHNVFLI
                     GRTEGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANA
                     KVIPAIPVREADNTVTLHFYPAWKSFPSEDAQADAQRMNRFIEERVREHPEQYFWLHK
                     RFKTRPEGSPDFY"
     gene            complement(1110..1646)
                     /gene="ruvC"
                     /locus_tag="ACFOCA_001561"
     CDS             complement(1110..1646)
                     /gene="ruvC"
                     /locus_tag="ACFOCA_001561"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFC6988259.1"
                     /translation="MAATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAP
                     LADRIAVIVRHIGEVVTVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLP
                     VSEYTALQVKQAVVGKGKAAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHG
                     LASRLNPSGMQVKRGRFQ"
     gene            complement(1649..1888)
                     /locus_tag="ACFOCA_001562"
     CDS             complement(1649..1888)
                     /locus_tag="ACFOCA_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HFC6988260.1"
                     /translation="MPHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLL
                     VCVMEQCGGNQSKASVMLGLNRNTLRKKLIQHGLL"
     gene            complement(1919..2929)
                     /gene="dusB"
                     /locus_tag="ACFOCA_001563"
     CDS             complement(1919..2929)
                     /gene="dusB"
                     /locus_tag="ACFOCA_001563"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HFC6988261.1"
                     /translation="MHIGGYFIDNPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTS
                     DPTLRNTRKTLHRSDFADEGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPA
                     KKVCNVQAGSALMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAED
                     CGIAALAVHGRTRTQMYKGEARYELIAETKCRLNIPVWVNGDITSPQKAAAVLKQTAA
                     DGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAECSAAILNHVRAMHAFYGETAGV
                     RIARKHIGWYIDEMPDGEQTRREINRLDSAAAQYDMLAGYLERLAGKTDRWACAYRQN
                     AV"
     gene            3295..4668
                     /locus_tag="ACFOCA_001564"
     CDS             3295..4668
                     /locus_tag="ACFOCA_001564"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6988262.1"
                     /translation="MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLL
                     AAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGY
                     IKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLD
                     EADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQN
                     TTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSA
                     QAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYV
                     HRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKP
                     EKPEMREPRQRNRYESAKAQREKNTRPENAANDAGAACGKIAGRSRRSRREHRTCALL
                     QPRYGVK"
     gene            4848..>4944
                     /locus_tag="ACFOCA_001565"
     CDS             4848..>4944
                     /locus_tag="ACFOCA_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009118462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HFC6988263.1"
                     /translation="MSTQFDVAVIGAGPAGSVASALLRKKGYSGLN"
BASE COUNT         1163 a         1424 c         1262 g         1095 t
ORIGIN      
        1 ggtttgcggt atttcttcca aaacctgctt cgaatttccc gaccaagtct taaaaatatt
       61 gtttttgaga tacttaaata gcagcgatta tcaaatgaaa tctgttcata taatctgcca
      121 ttttgcattt aaaaaaacaa tcaggagttt cgactcgaaa tgcctgatat gttttgtaat
      181 tttacgtagt cagtaaaaat cggggctgcc ttccggacgg gttttaaaac gcttgtgcag
      241 ccaaaaatac tgctcgggat gttcgcgcac gcgttcctcg ataaaacggt tcatgcgctg
      301 cgcgtcggct tgcgcatctt cactcggaaa ggatttccaa gccgggtaga aatgcagtgt
      361 aactgtattg tctgcctcgc ggacgggaat ggcgggtatc acttttgcat ttgcaagcgc
      421 ggcaatgcgg ctcaatccgg taatcgttgc cgtctgaata ccgaaaaaat ccacaaaaac
      481 cgaatcgttg cgtccgaaat cctgatcggg cagatacagg aacggcgcgc tgcttttacg
      541 gaactgtttg actagagcgc gcagcccttc ggtgcgcccg ataaggaaga cgttgtgata
      601 gcggttgcgg cctttcaaaa tctgttcgtc caatatcttg tttttttggt gggaatacat
      661 actaattagc ggaacatcct gattaagcgc gtacaccgcc atctcgaacg cggtaaagtg
      721 cgggtacagg atgatgactt ttccccccgc cgccagcgcg tcgtccaaat aatgcttatt
      781 gcggtaacgc accagcgatt tcaaacgccc ggcgggcgcg taccaatata aaccgtattc
      841 caacattagt ttcgccatat gtttgaaatg ctgcttcaat acggtttcgc gcttttttcc
      901 gtcccactcg ggaaagcatt ttgccaaatt gatttcgccg atacggcggc ggtgtttgac
      961 caaaaggtag gcaagcaaac ccgtcagatc ggcaagtttg tgcagcagcg caaacggcag
     1021 aaactgcaaa acatacagta caaaaaatat aaatttcatc tcgatacaca ttttcttttc
     1081 agacggcaaa atacaaatgc cgtctgaaac tattgaaacc ttccgcgctt gacctgcatc
     1141 cccgacgggt tgagccggga cgcaagcccg tggttgcgta aggcgtgggt cagcgcgacg
     1201 gcaagaccgt ccgccgcatc cgcctgcggc gttcccgaaa gccccagcat ctgcaccacc
     1261 atatgctgca cctgttcttt cgctgccttg cccttgccga ccaccgcctg tttgacctgc
     1321 aaggccgtgt attccgaaac gggcagctta tggctgacca atgccgccaa tgccgcgccc
     1381 ctagcctgac cgagcatcag cgtcgatgca gggttgacgt tgacgaacac ctgttccact
     1441 gccgcctgtt gaggcttgta aacagtaacg acttcgccga tatgccgcac aatcacggca
     1501 atcctgtctg ccagaggcgc atcggcaggc gttttgatgc aaccggaggc gacgtaaaaa
     1561 tgatcgcgcc ccctgacatc gatgatgccg aaacccgtta cgcggctgcc cgggtcgatg
     1621 cctaagatac ggacggttgc agccatattc acagcaaacc gtgttgaatt agttttttac
     1681 gcaaggtatt gcggttcagt cccagcatca cggatgcttt ggactggttg ccgccgcatt
     1741 gctccatcac gcacaccagc agcggttttt ccacctgatg caagaccata tcgtacacgc
     1801 cgcaaggttc ggtaccgttc aggtctttga aatattgttc caaattttgt ctgatacatt
     1861 gggaaatatc gggaagggta tggggcataa tcgcgctttc aaaaggataa tcgggtgttc
     1921 agacggcatt ttggcggtag gcgcacgccc aacggtcggt ttttccggca agtctttcaa
     1981 gataacctgc aagcatgtcg tattgcgccg ccgcactgtc caagcggttg atttcacgac
     2041 gtgtctgttc gccgtcgggc atttcgtcga tgtaccagcc tatgtgtttg cgtgcaatgc
     2101 gcacaccggc ggtctcacca taaaacgcgt gcatggcgcg gacgtggttc aaaatggcgg
     2161 cactgcattc tgccaaactc aaggcaggcg gtaaaacacc gtgttcggcg taatgtttca
     2221 aatcgcggaa gaaccacggt ctgccttgcg cgccgcgccc tatcatgatg ccgtcggcgg
     2281 cggtttgttt gaggacggcg gcggcttttt gcggcgaagt gatgtcgccg ttgacccaga
     2341 ccgggatgtt cagacggcat ttggtttcgg cgatgagttc gtaacgcgcc tcgcctttgt
     2401 acatttgcgt gcgcgtgcgt ccgtggacgg caagggcggc gatgccgcaa tcttcggcga
     2461 ttttggcgat gacgggcagg ttttgatggt cgtcgtgcca acccaaacgg gttttgaggg
     2521 taacgggtac acctgccgca cggacgacgg cttccaaaat ggcggcaacc agcggctcgt
     2581 tctgcatcag cgcgctaccg gcttggacat tgcagacttt tttagcggga cagcccatat
     2641 tgatgtcgat aagctgcgcc ccaaggctga cgttgtaacg cgcggcatcc gccatctgct
     2701 gcggatcgct gccggcaatc tgcacggcaa cgatgccgcc ttcatcggca aaatcgctgc
     2761 ggtgcaaggt ttttctagta tttctgagcg tcgggtcgct ggtcagcatt tcgcacaccg
     2821 cccaacctgc gccaaaatct cggcaaagtc ggcggaacgg tttgtcggta atgcccgcca
     2881 tcggcgcaag tgcgatgggg ttgtcgataa aatagccgcc gatgtgcata atggatccgc
     2941 gtttcaaaaa agtacgccat tgtacatttt ttaagcagga tttccaatct ccggacgcgc
     3001 ccgcgattgg gtcggacacc gttttatggc ataatccgca cacagattcc ctgccccgcc
     3061 actcacagga gggcagttta tagtggatta acaaaaaccg gtacggcgtt gcctcgcctt
     3121 agctcaaaga gaacgattct ctaaggtgct gaagcaccaa gtgaatcggt ttcgtgctat
     3181 ttgtactgtc tgcggctcgc cgccttgtcc tgatttttgt taatccacta tatttccccg
     3241 tcctatcggt ttcccgtttc agacgacata aggtctgaaa gaaagactac aattatgagt
     3301 aatccatttt cctctttagg tttgggtacg gaactcgttt ccgcactgac cgcgcaaggt
     3361 tacgaaaacc cgacgcccat ccaagccgcc gccattccca aagcactcgc cggtcatgat
     3421 ttactagccg ccgcgcaaac cggcacgggc aaaaccgccg cctttatgct gccctcgctc
     3481 gaacgcctca agcgttacgc caccgccagc acctcgcccg cgatgcaccc cgtgcgtatg
     3541 ctcgtcctca cccccacgcg cgaacttgcc gaccaaatcg accaaaacgt gcagggctac
     3601 atcaaaaacc tgccgctgcg ccacaccgtc ttgttcggcg gtatgaatat ggacaaacag
     3661 accgccgacc tgcgtgccgg ctgcgaaatc gtcgtcgcca ccgtcggacg gctgctcgac
     3721 cacgtgaaac agaaaaacat ccatttgaac aaagtcgaaa tcgtcgtttt ggacgaagcc
     3781 gaccgtatgc tggatatggg ttttatcgac gacatccgca aaatcatgca gatgctgccc
     3841 cgccaacgcc aaaccctgct cttttccgcc accttctccg ccccgatacg caaactggcg
     3901 caagacttca tgaacgcgcc cgaaaccgtc gaagtcgccg cgcaaaacac caccaacgcc
     3961 aacgtcgagc agcacatcat cgccgtcgat accattcaga agcgcaacct gctcgaacgg
     4021 ctgattgtcg atttgcatat gaaccaggtc atcgtgttct gcaaaaccaa acaaagcgtc
     4081 gaccgcgtaa cgcgcgaact ggtgcgccgc aacctgtccg cacaggcgat acacggcgac
     4141 cgttcccaac aaagccggct cgaaacactc aacgccttca aagacggcaa cctgcgcgtc
     4201 ctcgtcgcca ccgatatcgc cgcgcggggg ctggatattg ccgaactacc cttcgtcatc
     4261 aattacgaaa tgcccgccca gcccgaagac tacgtccacc gcatcgggcg cacggggcgc
     4321 gcgggcgcgg acggcgtggc gatttccctg atggacgaat ccgaacagaa aatgtttgaa
     4381 tccattaaag agctgaccgg caacaagctg ctcatcgagc gcatcgaggg cttcgagccg
     4441 caatggtggg aacagggcgg cgcaaaaccg gaaaaacccg aaatgcgcga accaagacaa
     4501 cgcaaccgct acgaatccgc caaagcgcaa cgcgaaaaaa acacccggcc ggaaaatgcg
     4561 gcaaacgatg cgggcgcggc ttgcggaaaa attgccggac gcagccgccg aagccgccgg
     4621 gaacaccgga cgtgcgccct gctccaaccg cgttacggcg taaaatagcc ctgaaaatca
     4681 aatgccgtct gaacatttcc cgtttcagac ggcatttttc aaactggact gacgcatcgg
     4741 gagcaaccgc ccgcaccgga taaatttctt ccgcaaacag tttcagacgg catttgctgc
     4801 ctgtacaata tcatttcctt ttccactcaa accatcagga tttcccaatg tccacccaat
     4861 tcgatgtcgc cgtaatcggc gcaggtccgg caggctcggt cgcatccgcc ctgctccgca
     4921 aaaaaggtta tagtggatta aatt
//
LOCUS       DAXIFS010000137         4916 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.137, whole genome shotgun sequence.
ACCESSION   DAXIFS010000137 DAXIFS010000000
VERSION     DAXIFS010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.137"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(370..446)
                     /locus_tag="ACFOCA_001566"
     tRNA            complement(370..446)
                     /locus_tag="ACFOCA_001566"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(410..412),aa:Asp,seq:gtc)
     gene            complement(479..554)
                     /locus_tag="ACFOCA_001567"
     tRNA            complement(479..554)
                     /locus_tag="ACFOCA_001567"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(519..521),aa:Val,seq:tac)
     gene            complement(624..2600)
                     /locus_tag="ACFOCA_001568"
     CDS             complement(624..2600)
                     /locus_tag="ACFOCA_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFC6988264.1"
                     /translation="MNEFSLAPIVVVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
                     MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGVTMLSVM
                     GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
                     PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
                     FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
                     FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
                     GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
                     KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSA
                     GEPVSFGDAKRREVLEAAGLGRAKMVVLTLNNMHETQHVLDNVLSMYPNMPVYVRATN
                     DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
                     LFVGSDDEAGFGENGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
                     NPDASFTLEGGDVLVVAGKKEEIISFENWSLQGI"
     gene            2749..3588
                     /locus_tag="ACFOCA_001569"
     CDS             2749..3588
                     /locus_tag="ACFOCA_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HFC6988265.1"
                     /translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
                     GETVIRDISALLGKPLVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
                     TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
                     RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDR
                     LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQDAAQN
                     TAS"
     gene            3787..4818
                     /gene="gap"
                     /locus_tag="ACFOCA_001570"
     CDS             3787..4818
                     /gene="gap"
                     /locus_tag="ACFOCA_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6988266.1"
                     /translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
                     AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
                     FTSKEKAKIHLESGAKKVLISAPGGDDVDATVVYGVNDSVLTADMTVVSNASCTTNCL
                     SPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
                     VGLVLPELKGRLDGLAIRVPTVNVSLVDLSFQAARDTTVEEINALMKAASEAGALKGV
                     LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMIKVFAWYDNEWGFSCQMLNTARRM
                     FGLEVRPLK"
BASE COUNT         1271 a         1609 c         1125 g          911 t
ORIGIN      
        1 ggtcttttct aaaatatgca gatattcgaa tatcgaattt gccttatgat tacggttttc
       61 tgtcttatct gccttaaaac gccggtattc cgtttgaacc aaattatatt tgccgaaaca
      121 ctcaaaaatc tcccttacct gcccgacaga catcaagcct tcgttgttgt agctgagaaa
      181 aatatattga aagtccgcat ccctaatcaa agcctcaaat accggaacca catccgattt
      241 tgagcaagtc cgcgctaaaa cacatcgtac agcgcaaaac cggatgggaa tggcaaaatc
      301 cggaaacaaa catttttcaa agcatacaaa caaaaaaata ccaaccggag gttggtattc
      361 cttaactttt ggcgcggcgg acggggctcg aacccgcgac ccccggcgtg acaggccggt
      421 actctaacca actgagctac caccgcgcat ccattgtttg caacaatgaa agaaaacttg
      481 gtgggtgatg acggagtcga accgccgaca ttctgcttgt aaggcagacg ctctaccaac
      541 tgagctaatc accctttcga tttgcgaaag cgttattaaa ccaaataacc ggaaatggcg
      601 caagccttat ttcggcattt catttatatt ccctgcaaac tccagttttc aaaagagata
      661 atttcttctt ttttgcctgc gaccaccaac acgtcaccgc cttccaatgt aaacgaggca
      721 tccgggtttt caatccggcc ggtgcggcgg cggacgaaca agagtttgat gccgtaagcc
      781 gccatcggaa gcgtgccgac tgttttgccg acggcgtatg cttctgcagc caaaggaaag
      841 gcgtgacgga cggtttcgcc gttttcgccg aatcctgcct catcatcact accgacaaac
      901 agtccctcca acgcggcata acggctgtgg cggatatttg ccatcgtctg atagacgtgc
      961 cgatacgacg cgccgttgcc taacatcgca tagcctgcca gcacgagtcc ggtttctttg
     1021 gtgtccgaca cggcttcttc cgcacctata tcggtaaacg ttttcacata atcgtcgttg
     1081 gtggcgcgca catatacggg catattggga tacatggaca gcacattgtc taaaacgtgt
     1141 tgcgtttcgt gcatattgtt gagcgtcagc accaccattt tcgcccgtcc cagaccggcg
     1201 gcttccaata cttccctgcg tttcgcatcg ccgaacgaca ccggttcgcc cgcacttctg
     1261 gcaacctgca cccgcgcaat gtccaagtcg agcgcgaaat acggaatatc ctcttgggca
     1321 aggacgcgtc cgaccgtctg cccgcccctg ccgaagccga caatcagcac atggtcggac
     1381 ttgctcatgg tttctaccag catactgtgc agatcgagcg acttcatgtc ccagcttgac
     1441 ttgaccaaac gcccgaccag cgcatcgctg ccgcccaaga ggaagggcgc gataatcatc
     1501 gacagcagaa ccgccgccgt cgccgcctgt tcccattctg gcgaaaccat atcaagctgc
     1561 ccggcaatgg ccagcatcac gaagccgaac tcgccgccct gcgcgagata caaagccgtt
     1621 ttgaggctgt cgccgaccga atgtttcatt ttgaaggcaa tggcaaacac aaccagtgcc
     1681 ttcaacacca gcagcattgc caacagcatc aatacctgcc gccagccgcc gatcaatgcc
     1741 tgaatgtcca gcttcatgcc gaccgtgata aagaaaaagc cgagcaaaat atcgcggaac
     1801 gggcggatgt cgtcttcgac ttggaaacgg tattccgttt ccgaaagcag catgccggca
     1861 acgaatgcgc ccaacgccat agacaaacct tccagctcag tcagataagc cacacccaag
     1921 gttaccagca gcacattgat cataaagagt tcggacgatt tgcgttttgc caccatcctg
     1981 aaccatcgcg acataatttt gctgccgacg aaaaacagca gccccagcgt cagcagcatt
     2041 tttgcaaacg ccaaacccaa ggccgcccaa atatttccgt cccctccgcc cgccagcgcg
     2101 ggaatcagaa tcatcagcgg cacgacggcg atgtcctgca tcagcagcac gcccatcgcc
     2161 atctgaccgt gcggctgccc caattccgtc ttttccgaca aaatccggct cacaatcgcc
     2221 gtggacgaca tcgccaacgc gcccgacacg gcaaacgccc aattgaacgg gacgcccgtc
     2281 agcatcagta tgcccattac cgacagcatc gtaacgccga cctgcaaacc acccagcccg
     2341 aacaccagcc gcctcattgc cctcagcttg ggcagcgaaa actccaagcc tatactgaac
     2401 atcaggaaca caatcccgat ttcgcccaaa taatccgtcg catggctttt cggaatcagg
     2461 ctgagcatac cgggccccgc caaaaagccc accagcaggt agcccagcat ggagggaatg
     2521 ttgaacttgc ggcacaggat caccgtaatg accgacacca gcaaaacaac cacaataggg
     2581 gcaagcgaaa attcgttcat aggccgtccg aacaggaaaa tacagaaaaa tgccgtctga
     2641 aacggcatac gccgccgcat tataacaaaa caccgcgcac catccgaaac gggcgcggca
     2701 tacaattctg ctaaaatacg ccctttcgat tttgagccgc acaccgacat gaccgccaca
     2761 gccgccgcca tagaccgcct gcttccccaa acccaatgcc gcgaatgcgg ctacgacggc
     2821 tgcctgccct atgcacaggc agtcgcaaca ggcgaagcgt acaacctctg cgccccgggc
     2881 ggagaaaccg tcattcggga catttccgcc ctgctcggca aaccccttgt cgcacctgcc
     2941 aaaacccaag ccaaagcact cgcccggata gacgaaaccg cctgtatcgg ctgcaccgcc
     3001 tgcatccgcg cctgccctgc cgatgccatt atgggcgcgg gcaaacttat gcacaccgtc
     3061 atcgccgacg aatgcaccgg ctgcggactc tgcgtcgccc cctgccccgt cgactgcatc
     3121 catatgcagc ccgttgccga caccgtcctg ccccgcgcgc gtcgcttcag cctgtccgcc
     3181 gacagccgtt ttgccgccgc cgaacacgcg cgcgcgcgct acctcaaacg caacgaacgc
     3241 aaacagcgcg aagccgacga acgcaaggcc atgcttgccg aacgcgaagc cgccgtccgc
     3301 aacgcgcgtc cgcaaacacc cgacacaccg aaaaaaccgg cgtttaaccc tgccgacctc
     3361 atcgccaaag ccatggcaaa agcgcaaacc caacaagacc gcctcgccgc cgccgacaac
     3421 cgcaaagact atcaggcgaa acagatagcc gaagcccgcg aacgcgccga gttgcgccgc
     3481 gcccaacgcg atatgaaata cggcagcgac agcgaaaaag ccgccgccct cgaatacctc
     3541 aaacaataca aagccaagca ggatgccgca caaaacaccg cctcctgacc cttccctgat
     3601 atgccgtctg aagccgcttc agacggcatt ttatcaagct ctccgtccgc cgcacccgtg
     3661 ccgtccgcat cttaccgccc acccttccgg ccgcgccgtt ttcaataaaa tattaattac
     3721 acgccactac aaatttgcta taatccgccc cgaaaatcta cccaaccctc aacaaaggaa
     3781 cgaaccatgg gcatcaaagt cgccatcaac ggctacggac gcatcggccg ccaggttttg
     3841 cgcgccatct acgattatca gattcaagac caactccaaa tcgtcgccgt caacgccagc
     3901 ggtagccttg aaaccaacgc ccacctcacc aaattcgaca ccgtgcacgg acgctttgaa
     3961 gccgacgtat cccacgacgg cggcaacctc atcgtcaacg gcgacaaaat ccccttcttc
     4021 tcgacccgca accctgccga actgccgtgg aaagaactcg gtgtcgattt ggtcatggaa
     4081 tgcaccggcg cgtttaccag caaagaaaaa gccaaaatcc acctcgaaag cggcgcgaaa
     4141 aaagtcctca tttccgcacc gggcggcgac gatgtcgatg caaccgtcgt gtacggcgtg
     4201 aacgacagcg tcctgaccgc cgacatgacc gtcgtttcca acgcttcctg caccaccaac
     4261 tgcctctcgc cggttgccaa agtgttgagc gaaagcgtcg gcatcgtcaa aggcgcgatg
     4321 accaccatcc acgcgctgac caacgaccaa accgttaccg acgtgcgcca caaagacctg
     4381 cgccgcgccc gcagcggcgt ggaaaacatg attccgacca aaaccggcgc ggcaaaagcc
     4441 gtcggtttgg tactgcccga attgaaaggc aggctcgacg ggcttgccat ccgcgtgccg
     4501 accgtcaacg tatcattggt agatttgagc ttccaagccg cgcgcgacac gacagtcgaa
     4561 gaaatcaacg cactgatgaa agccgcctcg gaagcaggcg cgctcaaagg cgttttaggc
     4621 tacaacaccc tgcccttggt ttccatggac ttcaaccaca ctaccgaagc cagccacttc
     4681 gacgcaacac tgaccaaagt cgttgacggc aacatgatta aagtcttcgc atggtatgac
     4741 aacgaatggg gcttcagctg ccaaatgctg aacaccgcac gccgtatgtt cggacttgaa
     4801 gtgcgcccgc tcaaataagc aataaaccgt caaacaaaat gccgtctgaa acccgatgtt
     4861 ttcaagttcc agacggcatt tttcaccgtg attttacccg gctgtcgtca tttcca
//
LOCUS       DAXIFS010000138         4831 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.138, whole genome shotgun sequence.
ACCESSION   DAXIFS010000138 DAXIFS010000000
VERSION     DAXIFS010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.138"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..241)
                     /locus_tag="ACFOCA_001571"
                     /pseudo
     CDS             complement(1..241)
                     /locus_tag="ACFOCA_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor"
     gene            complement(326..838)
                     /locus_tag="ACFOCA_001572"
     CDS             complement(326..838)
                     /locus_tag="ACFOCA_001572"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988267.1"
                     /translation="MLLKVVPERTVSADAKTRDPMWDNAALQTSEGVNFIARFLGFFS
                     DGEYRYVDVLQPNHSDIIRYSGKDFPINQIFNHIHPARYAVTFENNVDSKLRRHWVAG
                     ATIRIIDRQTDEVIAKKTIYVFEKGLDGTGGARMPWKFAILCNKERLTSSEPLSDFVL
                     SVLKPYILRP"
     gene            complement(829..1182)
                     /locus_tag="ACFOCA_001573"
     CDS             complement(829..1182)
                     /locus_tag="ACFOCA_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988268.1"
                     /translation="MFTTNDLRHFLEGLAILFSIGYWGTMLLLLWFLVRFAYKKPKRN
                     PGKILSGSLTAAAILMLFVWIIPKQFGPIKEEIQAQEEWDRKYKEAEAVFNEQCKTAG
                     ERFTRRRTMWKGLCC"
     gene            1418..2845
                     /locus_tag="ACFOCA_001574"
     CDS             1418..2845
                     /locus_tag="ACFOCA_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HFC6988269.1"
                     /translation="MFFSALKSFLSRYITVWRNVWAVRDQLEPPKRTAEEQAFLPAHL
                     ELTDTPVSAAPKWAARFIMAFALLALLWSWFGKIDIVAAASGKTVSGGRSKTIQPLET
                     AVVKAVHVRDGQHVKQGETLAELEAVGTDSDVVQSEQALQAAQLSKLRYEAVLAALES
                     RTVPHIDMAQARSLGLSDADVQSAQVLAQHQYQAWAAQDAQLQSALRGHQAELQSAKA
                     QEQKLVSVGAIEQQKTADYRRLRADNFISEHAFLEQQSKSVSNWNDLESTRGQMRQIQ
                     AAIAQAEQSRVLNTQNLKRDTLDALRQANEQIDQYRGQTDKAKQRQQLMTIQSPADGT
                     VQELATYTVGGVVQAAQKMMVVAPDDDKMDVEVLVLNKDIGFVEQGQDAVVKIESFPY
                     TRYGYLTGKVKSVSHDAVSHEQLGLVYTAVVSLDKHTLNIDGKAVNLTAGMNVTAEIK
                     TGKRRVLDYLLSPLQTKLDESFRER"
     gene            2914..4317
                     /locus_tag="ACFOCA_001575"
     CDS             2914..4317
                     /locus_tag="ACFOCA_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFC6988270.1"
                     /translation="MTLLNLMIMQDYGISVCLTLTPYLQHELFSAMKSYFSKYILPVS
                     LFTLPLSLSPSVSAFTLPEAWRAAQQHSADFQASHYQRDAVRARQQQAKAAFLPHVSA
                     NASYQRQPPSISSTRETQGWSVQVGQTLFDAAKFAQYRQSRFDTQAAEQRFDAAREEL
                     LLKVAESYFNVLLSRDTVAAHAAEKEAYAQQVRQAQALFNKGAATALDIHEAKAGYDN
                     ALAQEIAVLAEKQTYENQLNDYTDLDSKQIEAIDTANLLARYLPKLERYSLDEWQRIA
                     LSNNHEYRMQQLALQSSGQALRAAQNSRYPTVSAHVGYQNNLYTSSAQNNDYHYRGKG
                     MSVGVQLNLPLYTGGELSGKIHEAEAQYGAAEAQLTATERHIKLAVRQAYTESGAARY
                     QIMAQERVLESSRLKLKSTETGQQYGIRNRLEVIRARQEVAQAEQKLAQARYKFMLAY
                     LRLVKESGLGLETVFAE"
     gene            complement(4481..>4831)
                     /locus_tag="ACFOCA_001576"
     CDS             complement(4481..>4831)
                     /locus_tag="ACFOCA_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HFC6988271.1"
                     /translation="QRLSLVSAQVGNRLIAPMVYQNTMTGVFFEAWFQQCLLPALTQK
                     SVIILDNARFHRMGVLREMAEKLGHKVLPLAPYSPELNPIEKVWANIKQYLRTVLSDY
                     ARFDDALLSYFDFN"
BASE COUNT         1230 a         1194 c         1255 g         1152 t
ORIGIN      
        1 atgaacgccg aatcagatac accgcgccga agaggaacgc ctaacaggtt tcctttaccg
       61 tccgttatgt acgtttcgta acattcgaag acttcctgaa ccctgcctgc cgtttcggtt
      121 tctgtccccc cctgttagat aaggggggaa gatttgaagc ggttgccggc ttcctgccgt
      181 ccgctggcgc gtccgtcatc acgccggcaa ccgcctttgt catcccttgc ttatcttcca
      241 tggtgcgaat cctcaaaaac gggcaaaaaa aagccctgtt acttgtagaa agtaaaggac
      301 gttaattttt gttaatcgtc ccttcttagg gacgcaatat ataaggtttt aaaacgctaa
      361 gaacaaaatc cgataacggc tctgaagaag taagtctttc tttattgcac aagatagcaa
      421 acttccacgg cattctcgcc ccacccgtgc cgtccaagcc tttttcaaag acatagatgg
      481 ttttcttggc aatcacttcg tcagtttggc ggtcgataat ccgtatggtc gcacctgcca
      541 cccagtgcct gcgcagcttg gaatcgacat tgttttcgaa cgttaccgca taacgggcgg
      601 ggtgtatatg attaaatatt tgatttatcg gaaaatcttt acctgaatac cgaataatat
      661 cggaatggtt gggttgcagg acatccacat agcggtattc cccatcgcta aaaaatccta
      721 ggaaacgagc aataaaattt acgccttcgc tggtctgtaa agccgcattg tcccacatcg
      781 ggtctctggt ttttgcatct gccgaaacgg tacgctcagg tactaccttc aacagcataa
      841 tcccttccac attgtccgcc gtctggtaaa tctttccccc gccgttttgc attgttcgtt
      901 aaacacggct tcggcttctt tgtattttct gtcccactct tcttgtgcct gtatttcttc
      961 tttgatcggg ccgaattgtt tgggaataat ccaaacaaac agcatcagga tagcggcggc
     1021 ggtcaggctg cctgaaagga ttttgccggg gttccgtttg ggctttttat aggcaaagcg
     1081 gacgagaaac caaagcaaca gcagcatggt gccccaatag ccgattgaga ataggatggc
     1141 caaaccttct aggaaatggc gtaaatcgtt tgtggtaaac atgggttgtt cctgtggtta
     1201 aatgtgcagg ctgctttttg ccgaaccttg ccgcatctca aaagcagcct gcgcttcagc
     1261 gttgcgttac gcagtaaaat aatgaatatt tgtaacgact tgggtatttt ttgtcaatat
     1321 tcccgccttt cccttaacag ctgccgcgct ttccgttaaa attcctttac atatttatat
     1381 tgtttcctgt ttctatattg ccaaggttat acccgttatg tttttctccg ccctgaaatc
     1441 ctttctttct cgatacatta ctgtatggcg caatgtttgg gcggtgcgcg accagttgga
     1501 accgcccaaa cgcacggcgg aagaacaggc gtttttgccc gcgcatttgg aactgaccga
     1561 tacgccggtc tctgccgctc cgaaatgggc ggcgcgtttt attatggcgt ttgcgctttt
     1621 ggctttgttg tggtcctggt tcggcaaaat cgatattgtg gcggcggctt cgggcaaaac
     1681 ggtgtcgggc gggcgcagca aaaccatcca gccgctggaa acggcggtgg ttaaggcggt
     1741 acatgtgcgc gacgggcagc atgtgaaaca gggagaaacg ctggcggaac tggaggctgt
     1801 gggaacagac agcgatgtgg tgcagtcgga gcaggctttg caggctgccc aattgtccaa
     1861 actgcgttat gaagcggtat tggcggcatt ggaaagccgt accgtgccgc atatcgatat
     1921 ggcgcaagca cggtctttag gtctctccga tgccgatgtg caatcggcgc aggtgttggc
     1981 gcagcaccag tatcaggcat gggcggcgca ggatgcgcaa ttgcagtcgg ctttgcgcgg
     2041 ccatcaggcg gaattgcagt cggccaaggc gcaggagcag aagctggttt cggtgggggc
     2101 gatcgagcag cagaaaacag cagactaccg ccgtttgcgg gccgacaatt ttatttcgga
     2161 acatgcgttt ttggagcagc agagcaaatc ggtcagcaat tggaacgatt tggaaagtac
     2221 gcgcggtcag atgaggcaga ttcaggcggc cattgcacag gcggagcaga gtcgggtgct
     2281 gaatacgcag aacctgaaac gcgatacgct ggatgcgctg cgccaggcaa acgaacagat
     2341 tgaccaatac cgcggccaaa cggataaggc aaagcagcgg cagcagctga tgacaataca
     2401 gtcgcctgcg gacggcacgg tgcaggaatt ggccacctat acggtgggcg gtgtggtgca
     2461 ggctgcccaa aaaatgatgg tggttgcgcc cgatgacgac aaaatggacg tggaagtttt
     2521 ggtattgaac aaagacatcg gttttgtgga acagggacag gatgcggtgg tgaagattga
     2581 gagttttccc tatacgcgct acggttatct gacgggcaag gtgaaaagtg tcagccatga
     2641 tgcggtaagc cacgaacagt tgggcttggt ttatacggcg gtggtgtcgc tggacaaaca
     2701 taccttgaat attgacggca aagcagtgaa tctgacggcg ggcatgaatg tcacggcgga
     2761 gattaaaacg ggtaaacggc gggtgctgga ttatctgtta agcccgctgc aaaccaaatt
     2821 ggacgaaagc tttagggagc gataggcgga tccgtactgg gcatttgtta tccgccggtt
     2881 cggacatgca gactgcctga aaccattgcc cggatgacat tgctcaatct aatgataatg
     2941 caagattacg gtatttccgt ttgcctgaca ctgacgccct atttgcaaca tgaactattt
     3001 tcggctatga aatcctattt ttccaaatat atcctacccg tttcactttt taccttgcca
     3061 ctatcccttt ccccatccgt ttcggctttt acgctgcctg aagcatggcg ggcggcgcag
     3121 caacattcgg ctgattttca agcgtcccat taccagcgtg atgcagtgcg cgcacggcaa
     3181 caacaagcca aggccgcatt ccttccccat gtatccgcca atgccagcta ccagcgccag
     3241 ccgccatcga tttcttccac ccgcgaaaca cagggatgga gcgtgcaggt gggacaaacc
     3301 ttatttgacg ctgccaaatt tgcacaatac cgccaaagca ggttcgatac gcaggctgca
     3361 gaacagcgtt tcgatgcggc acgcgaagaa ttgctgttga aagttgccga aagttatttc
     3421 aacgttttac tcagccgaga caccgttgcc gcccatgcgg cggaaaaaga ggcttatgcc
     3481 cagcaggtaa ggcaggcgca ggctttattc aataaaggtg ctgccaccgc gctggatatt
     3541 cacgaagcca aagccggtta cgacaatgcc ctggcccaag aaatcgccgt attggctgag
     3601 aaacaaacct atgaaaacca gttgaacgac tacaccgacc tggatagcaa acaaatcgag
     3661 gccatagata ccgccaacct gttggcacgc tatctgccca agctggaacg ttacagtctg
     3721 gatgaatggc agcgcattgc cttatccaac aatcatgaat accggatgca gcagcttgcc
     3781 ctgcaaagca gcggacaggc gcttcgggca gcacagaaca gccgctatcc caccgtttct
     3841 gcccatgtcg gctatcagaa taacctctac acttcatctg cgcagaataa tgactaccac
     3901 tatcggggca aagggatgag cgtcggcgta cagttgaatt tgccgcttta taccggcgga
     3961 gaattgtcgg gcaaaatcca tgaagccgaa gcgcaatacg gggccgccga agcacagctg
     4021 accgcaaccg agcggcacat caaactcgcc gtacgccagg cttataccga aagcggtgcg
     4081 gcgcgttacc aaatcatggc gcaagaacgg gttttggaaa gcagccgttt gaaactgaaa
     4141 tcgaccgaaa ccggccaaca atacggcatc cgcaaccggc tggaagtaat acgggcgcgg
     4201 caggaagtcg cccaagcaga acagaaactg gctcaagcac ggtataaatt catgctggct
     4261 tatttgcgct tggtgaaaga gagcgggtta gggttggaaa cggtatttgc ggaataaagc
     4321 aggctgaaac ggttatgaaa ttcccaaagc agcctgcacc ccgtttcgaa agtgcaggct
     4381 gctttgggat tgatccgata ctttcacatt ctcattgcct ttaaataaag cacagttaaa
     4441 aacacattta aattaagtgc gaattaattc aaatgtatat tcaattaaaa tcaaaatagg
     4501 acagtagtgc atcgtcaaat cgggcgtaat cagacaaaac ggttcgcaga tactgcttaa
     4561 tattcgccca cactttctca atcgggttga gctcaggtga ataaggtgca agaggcaata
     4621 ccttatgtcc caatttttcc gccatttccc gtaagacacc catacggtga aatcgcgcat
     4681 tatctaaaat aatcaccgat ttttgagtca atgcgggcag taggcattgc tgaaaccacg
     4741 cttcaaaaaa gactccggtc atcgtatttt gataaaccat cggagcaatc agccggttgc
     4801 cgacttgtgc ggacaccaaa gataagcgtt g
//
LOCUS       DAXIFS010000139         4824 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.139, whole genome shotgun sequence.
ACCESSION   DAXIFS010000139 DAXIFS010000000
VERSION     DAXIFS010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4824
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.139"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..708
                     /locus_tag="ACFOCA_001577"
     CDS             <1..708
                     /locus_tag="ACFOCA_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HFC6988272.1"
                     /translation="LPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQD
                     FITITTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKKVIDGEQ
                     GGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVS
                     VNEFSQIIQEPEFQSLALDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALS
                     REFYQSAKNQAEKKDGE"
     gene            698..3472
                     /locus_tag="ACFOCA_001578"
     CDS             698..3472
                     /locus_tag="ACFOCA_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HFC6988273.1"
                     /translation="MANNKTLFDWVEDRKSTLEEIEQTDFFALPEFVERNLKYPFFEW
                     QKSALENFVIFDRASKLKDFPDIKNRPTHLLFNMATGAGKTMMMAALILYYFEKGYRH
                     FLFFVNQNNIVDKTENNFIDPAHAKFLFTEKILQGDTVIPIRKVEMFSPHSDGIEIKF
                     TSIQKLYNDIHTERENQTTLADLHKLNLVMLGDEAHHLNAQTKGKKQDELDLEVELKA
                     NAGNAEIERKGWEHMVLELLLNKNGNPGQNVLLEFTATLPENADVQQKYADKIITKFG
                     LKEFLQKGYTKEINLVSSTLNKKERVLHALLFAWYRHQIALKYGIANFKPVMLFRSKT
                     IDESKADYSAFLNWAENVQADDFEFLDTFSGSLNNSDNANEQGKTRTEQALKFMQENG
                     FEFAHLANWVKQNYQKHNVIITNSETNKNKTEKTDSETEKLLNNLEAADNPIRAIFTV
                     DRLTEGWDVLNLFDIVRLYEGQNGGGSNKKSGKTAAATVSEKQLIGRGVRYFPFAFEG
                     KQPNKRKFDNDMQHELRILEELFYYTHDEQSRYISELKNELRKDGYLPEKDDDKVLAT
                     FKLKSEFADNKDFRELLIWANKKIPNPNAKSNNADSLQANPQTLSFQIHGNQLLQETQ
                     FTADENDETARQIGTQNNFTQTIKMSEMERHIFNKALHIKGKNSQSLFHFDRLQSKLN
                     IQNRNELQNNLLKDWQIEFLGLGQDKQVRPDDKLAGCLKILEMVEKHLNESDMPFIGT
                     KEFTPKKLWEIFGTPKQKWVKKDDVKTTIATQNDWYVMDNFAGTGLEEALIQFISARL
                     GDLKSKYDVHLIRNEEVFKLNNFADGEGFMPDFILLLKDKQKSSSNGVNDFLHYQIFI
                     EPKGEHLVETDGWKEEFLEAITVEYGMDKILQKDTPHYRLIGLPFFTDHQKNGQFTES
                     FPLGAASLEK"
     gene            complement(3621..4793)
                     /locus_tag="ACFOCA_001579"
     CDS             complement(3621..4793)
                     /locus_tag="ACFOCA_001579"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFC6988274.1"
                     /translation="MKRDLSKMTCIEDLRRVAKRKMPRMFYDYIDSGSWTETTYRENT
                     SDFKDIRFRQKVLVNMEGRSLETKMIGQDVKMPVAIAPTGFTGMAHADGEILAARAAE
                     KFGIPFTLSTMSICSIEDVAENTSAPFWFQLYVMRDREFMENLIKRAKDAKCSALVLT
                     ADLQVLGQRHKDIKNGLSAPPKPTIANLINLATKPEWCMKMLNTERRTFRNIVGHAKN
                     VGDLSSLSSWTSEQFDPRLSWDDVARIKDLWGGKLIIKGIMEPEDAEKAAKSGADALI
                     VSNHGGRQLDDTVSAIKALPDIVSAVGSDIEVWMDSGIRSGQDILKAWALGAKGTMIG
                     RAFLYGLGAYGEEGVTRALEILYKEMDISMAFTGHRDIQDVDASILRGKDWGRETV"
BASE COUNT         1534 a          994 c         1018 g         1278 t
ORIGIN      
        1 ttacctacaa aaaaacctaa aactattttt tataaacctg aatacagtag tggtaatgga
       61 actgaacaga tgaaaaatct ttttggtgaa aaggcattta aaaatcctaa accagaagaa
      121 cttatccaag attttattac catcacaacc aacgaatccg acatcgtctt agactaccat
      181 cttggtagtg gcacaaccgc cgccgttgcc cacaaaatga accgacaata tatcggtatt
      241 gaacaaatgg attatattga aacgcttgcc gttgaacgct tgaaaaaagt gattgatggc
      301 gagcaaggcg gtatttccaa agccgtgaat tggcaaggtg gtggcgagtt tgtttatgcc
      361 gaacttgccc catttaacga aaccgcaaaa caacaaattt tggcttgcga agattcagac
      421 ggcatcaaaa cgctgtttga aggtttatgc gaacgctatt tcttgaaata caacgtcagc
      481 gtaaatgaat ttagtcaaat cattcaagag cctgaatttc aatccttggc attagacgaa
      541 caaaaacaaa tggtgcttga aatgttggat ttaaatcaaa tgtatgtttc attatccgaa
      601 atggatgatg agcaatttgc aggttgctta aatgatgacg ataaagcgtt aagccgtgaa
      661 ttctatcaat cagcaaaaaa tcaagcggag aaaaaagatg gcgaataata aaacgttatt
      721 tgattgggtg gaagaccgca aatcaacgct ggaagaaata gaacagacag attttttcgc
      781 gctgcctgaa tttgtagaac gcaatttaaa atatccgttt tttgaatggc aaaaatcggc
      841 tttagaaaac tttgtgattt ttgaccgcgc ttcaaaatta aaggatttcc ctgacatcaa
      901 aaaccgccct acccatttgc tgttcaatat ggcaacaggt gctggcaaaa cgatgatgat
      961 ggcggcgttg attttgtatt attttgaaaa aggttatcgg cattttttgt ttttcgtcaa
     1021 tcaaaataat atcgtggata aaacggaaaa taattttatt gacccggcgc acgcaaaatt
     1081 tttatttacc gagaagattt tgcaaggtga tacggtaatt cctattcgca aagtggaaat
     1141 gttcagccca cattcagacg gcattgaaat taaatttacc agcattcaaa aactgtataa
     1201 cgatatccac accgagcgag aaaaccaaac cacattggca gatttgcaca aattgaacct
     1261 tgtgatgctg ggcgatgaag cacaccattt aaacgcacaa accaaaggca aaaaacaaga
     1321 cgagttggat ttggaagtgg aattaaaagc caatgcaggc aatgccgaaa ttgaacgcaa
     1381 aggctgggag catatggttt tggaattgtt gctcaataaa aatggcaatc ccggccaaaa
     1441 tgtgctgttg gaatttaccg ccacgctgcc tgaaaatgcg gacgtgcaac aaaaatatgc
     1501 ggacaaaatc atcacaaaat ttggcttaaa agagtttttg caaaaaggtt ataccaaaga
     1561 aatcaatttg gtatccagta cgctgaataa gaaagagcgg gtgttgcacg ctttattatt
     1621 tgcttggtat cgccatcaaa tcgcgttgaa atacggcatt gccaatttca agcctgtgat
     1681 gttgtttaga agtaagacga ttgatgaatc aaaagcggat tattcggcat ttttaaattg
     1741 ggcagaaaat gtacaagcgg atgattttga gtttttagat acgttttcag gcagcctgaa
     1801 taatagcgac aacgccaacg aacaaggcaa aacccgaacc gaacaagccc taaaatttat
     1861 gcaggaaaat ggctttgagt ttgcacattt ggcaaattgg gtgaaacaaa attatcaaaa
     1921 acataatgtg attattacca actccgaaac caacaaaaac aaaactgaaa aaaccgacag
     1981 cgaaaccgaa aaattgctaa acaatttgga agcggctgat aatccaatcc gtgccatttt
     2041 tacggtagat agattaaccg aaggttggga cgttctgaat ttgtttgata ttgtgcgttt
     2101 gtatgaaggg caaaatggcg gtggttcaaa taaaaaatca ggcaaaacgg ctgccgctac
     2161 cgtatcggaa aagcagttga ttggtcgtgg cgtgcgttat tttccatttg cgtttgaagg
     2221 taaacagccg aataaacgca aatttgacaa cgacatgcaa cacgaattgc gtatcttgga
     2281 agaattgttt tattacacgc acgatgagca atcccgctat atttcagaac tgaaaaatga
     2341 gttgcgaaaa gacggttatt tgcctgaaaa agacgatgat aaggtgttgg caacatttaa
     2401 actcaaatct gaatttgccg ataataagga ttttagagag ttgttaattt gggcgaataa
     2461 aaaaatcccc aacccaaacg ccaaaagcaa taatgcagac agcctgcaag ccaatccgca
     2521 aacgctttca ttccaaattc acggcaatca attgttgcag gaaacgcaat ttacagccga
     2581 tgaaaatgat gaaacagccc gacaaatcgg cacacaaaat aattttactc aaaccataaa
     2641 aatgagtgaa atggagcggc acattttcaa taaagcatta catatcaaag ggaaaaatag
     2701 tcaatcttta ttccattttg accgcctgca aagcaaactc aacattcaaa atcgcaatga
     2761 attgcaaaat aacttgttga aagactggca aattgaattt ttaggattag ggcaagacaa
     2821 acaggttcgc ccggatgata aacttgcagg ctgcctgaaa atcttggaaa tggttgaaaa
     2881 acatctgaat gaaagtgata tgccgtttat cggtacaaaa gaatttacac ctaaaaaatt
     2941 atgggaaatt ttcggcacgc caaaacaaaa atgggtcaaa aaagatgatg taaaaacgac
     3001 tattgccacg caaaatgatt ggtatgtgat ggataatttt gctggaacgg gtttggaaga
     3061 agcgttaatt caatttattt cagcgcgttt gggcgatttg aaatctaaat atgacgttca
     3121 tttaatccgt aatgaagaag tgtttaaatt gaataacttt gccgatggtg aaggatttat
     3181 gccggacttt attttattgc tgaaagataa acaaaaatct tcttccaatg gtgtgaacga
     3241 ctttttgcat taccaaattt tcattgagcc caaaggtgag catttagtgg aaactgatgg
     3301 atggaaagaa gaatttttag aagccatcac tgtggaatat gggatggata agatcctgca
     3361 aaaagataca ccgcattatc gtttgatcgg tttaccgttt tttactgatc atcagaaaaa
     3421 tggacaattt acggagtcat tccctttagg tgcggcatcg cttgaaaaat agagtagtgc
     3481 attgcaggca accccgtttg acaaaacttc ctttacaaaa gggcgttttg tcagatattt
     3541 aatcaacaca ttattaaaat acagccaaat tttaatgccg tccgaaccct gtgttcagac
     3601 ggcatcgtat ttttcagtat ctaaaccgtt tccctacccc aatctttacc ccttaaaatc
     3661 gaggcatcga catcttgaat atcgcggtgt cccgtaaacg ccatagatat atccatttct
     3721 ttatatagaa tttccagcgc acgggttacg ccttcttcgc catacgcgcc caagccatac
     3781 aggaacgccc gacctatcat tgtacctttc gcgcccaaag cccacgcctt caaaatatcc
     3841 tgaccgctgc ggatgccgct gtccatccaa acttcgatgt cgctgcccac tgcgctgacg
     3901 atgtcgggca aggctttgat ggcagacacg gtatcgtcga gctgtcggcc gccgtggttg
     3961 gaaacaatca atgcgtccgc gccgcttttc gctgcttttt ccgcgtcttc gggttccata
     4021 atgcctttga taatcagctt gccgccccac aaatctttaa tgcgcgccac atcgtcccag
     4081 ctcaggcgcg ggtcgaattg ttcggaagtc catgaagaca gcgaagacaa atcgccgacg
     4141 ttcttcgcgt gtccgacgat attgcggaac gtgcggcgtt ccgtgttcag cattttcatg
     4201 caccattccg gtttggtcgc cagattgatt aaattggcga tggtcggttt cggcggcgcg
     4261 gacaggccgt ttttgatgtc tttgtggcgt tgacccaaaa cctgcaaatc ggcggtcaat
     4321 accaatgccg aacatttggc atccttcgcg cgcttaatca ggttttccat aaactcgcgg
     4381 tcgcgcatca cataaagctg aaaccaaaac ggcgcgctgg tgttctcggc aacgtcttca
     4441 atcgagcaga tggacatggt ggacaacgta aacggaatac cgaacttctc cgccgcccgc
     4501 gccgccaaaa tttcgccgtc tgcgtgtgcc atgccggtaa aacccgtcgg cgcaatcgcc
     4561 accggcattt tcacatcctg cccgatcatt ttagtctcaa ggctgcgtcc ctccatattg
     4621 accaatactt tttgacggaa gcggatgtct ttgaaatccg aagtattttc ccgataagtc
     4681 gtttccgtcc acgaacccga atcgatgtaa tcgtaaaaca tacgcggcat tttgcgcttg
     4741 gcaacgcggc gcaagtcttc gatgcaggtc attttgctca aatcacgttt catttgtcgc
     4801 ccctgaatac ctgaataact ttat
//
LOCUS       DAXIFS010000140         4821 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.140, whole genome shotgun sequence.
ACCESSION   DAXIFS010000140 DAXIFS010000000
VERSION     DAXIFS010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4821
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.140"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            82..1047
                     /locus_tag="ACFOCA_001580"
     CDS             82..1047
                     /locus_tag="ACFOCA_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6988275.1"
                     /translation="MLRLTALTLCTVLALGACSPKDSDSAPQAKEQAVSAAQSESASV
                     TVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPA
                     GTLFEPDYETLNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESAKERIDA
                     LAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGPSSRLGGWL
                     HKDIGVPAVDEAIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLNNP
                     LVAETTAWKKRQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK"
     gene            1211..2179
                     /locus_tag="ACFOCA_001581"
     CDS             1211..2179
                     /locus_tag="ACFOCA_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6988276.1"
                     /translation="MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQ
                     VMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMAGAGQSAALGLLLMSLLL
                     PAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
                     ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLG
                     LNRTAVLWSGLIIVALITSLVIVTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLG
                     ASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAHAV"
     gene            2169..3143
                     /locus_tag="ACFOCA_001582"
     CDS             2169..3143
                     /locus_tag="ACFOCA_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFC6988277.1"
                     /translation="MPSEKNIGFMAGSSRPLWVAFALLLVSCILFMTLNVKGDWDFVL
                     HLRLTKLAALLMVAYAVGVSTQLFQTLTNNPILTPSILGFDSLYVFLQTLLVFTFGGV
                     GYASLPLTGKFGFELAVMMGGSLLLFYTLIRQGGRDLPRMILIGVIFGILFRSLSSLL
                     SRMIDPEEFTAAQANMFAGFNTVHSELLGIGALILLVSAAVVWRERYRLDVHLLGRDQ
                     AVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLP
                     MTVCIGGILLVGGQTVFEHFLGMKAVLSVVVEFAGGLVFLYLVLRHKK"
     gene            3188..3814
                     /locus_tag="ACFOCA_001583"
     CDS             3188..3814
                     /locus_tag="ACFOCA_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdE family protein"
                     /protein_id="HFC6988278.1"
                     /translation="MTQERLPEFFDRAPTLTVQDPLAAFLGAAENGILTYRYADAVRL
                     CGHSCPTVSGAYLMVIKGLKALYGEELPERGGIEAAMQGARDEGTVGVTASVVQLLTG
                     AAPETGFGGIGMQGRFARRNLLSFGVGEINGTLTLRRKDNGKTVAVGLNAALQPFAPE
                     MRDIMPKAVSGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV"
     gene            3897..4655
                     /locus_tag="ACFOCA_001584"
     CDS             3897..4655
                     /locus_tag="ACFOCA_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6988279.1"
                     /translation="MITIRNVSYRIGTRPILDNVSLDIPEGGITALVGPNGAGKSTLF
                     SFMARLRPLESGSIAYRGKNLADTPTAELAKTLSILTQENSIMSRITVRDLLMFGRYP
                     YHQGRPTAECRRIVNGAIEEFHLQDLSDRYLTELSGGQRQRAMIAMVFCQSTDYVLLD
                     EPLNNLDMYHARSLMQILRRLTDEHKRTTVVVLHDINQAAAYADHVVAMKNGQVAMQG
                     KPNDIFTAANIKTLFDMDVDVLDYEGKKLVIHHI"
BASE COUNT         1027 a         1417 c         1286 g         1091 t
ORIGIN      
        1 ttatcattta tcctttctag agccgttccg gtttgtccga ccggcggctt tgccccaata
       61 tccccatttt ggagacaccc tatgttgcgt ttgaccgcat tgaccctctg caccgtcctc
      121 gccttgggcg cgtgttcgcc gaaagattcc gactctgccc cacaagccaa agaacaggcg
      181 gtttccgccg cacaatccga aagcgcgtcc gttaccgtca aaaccgcgcg cggcgatgtt
      241 caaataccgc aaaaccccga acgtatcgcc gtttacgatt tgggtatgct cgacaccttg
      301 agcaaactgg gcgtgaaaac cggtttgtcc gtcgataaaa accgcctgcc gtatttagag
      361 gaatatttca aaacgaccaa acccgccgga actttgttcg agccggacta cgaaacgctc
      421 aatgcctaca agccgcagct catcatcatc ggcagccgcg ccgccaaggc gtttgacaaa
      481 ttgaacgaaa tcgcgccgac catcgaaatg accgctgata ccgccaacct caaagaaagt
      541 gccaaagagc gtatcgacgc gctggcgcaa atcttcggca aacaggcgga agccgacaag
      601 ctgaaggcgg aaatcgacgc gtcttttgaa gccgcgaaaa ctgccgcgca aggcaaaggc
      661 aaaggtttgg tgattttggt caacggcggc aagatgtccg ccttcggccc gtcttcacga
      721 ctgggcggct ggctgcacaa agacatcggc gttcccgctg ttgacgaagc catcaaagaa
      781 ggcagccacg gtcagcctat cagctttgaa tacctgaaag agaaaaatcc cgactggctg
      841 tttgtccttg accgcagcgc ggccatcggc gaagagggtc aggcggcgaa agacgtgttg
      901 aataatccgc tggttgccga aacaaccgcc tggaaaaaaa gacaagtcgt ttacctcgtt
      961 cctgaaactt atttggcggc cggcggcgcg caagagctgc tgaatgcaag caaacaggtt
     1021 gcggatgctt ttaacgccgc gaaataatga aacggcggca ttcgatgccg tctgaaacac
     1081 ggatgcaaac cgcttcctgt gtttcagacg gcattgcccg atacggaggc ttcaaacaag
     1141 gctttccgct ccgacggttc ggactgcctt gtttgaatct tctacgcctt aacgcttttc
     1201 ccttctgttt atgactgcca aacctttttc cctcaacctg accaacctcc tgctgctggc
     1261 ggtattgttt gccgtcagcc tgtcggtggg cgttgccgat ttccgctggt cggatgtgtt
     1321 ttcgctatcc gacagccagc aggtcatgtt catcagccgc ctgccgcgca cgtttgcgat
     1381 tgtgctgacg ggcgcgtcta tggcggtggc gggcatgatt atgcagattc tgatgcgtaa
     1441 ccgttttgtc gagccttcta tggcgggtgc gggtcagagt gcggctttgg gtttgcttct
     1501 gatgtccctg ctgctgcctg ccgcgccgct gccggtcaaa atgtcggttg ccgccgttgc
     1561 cgcgctaatc gggatgctgg tgtttatgct gctgatccgc cgcctgccgc cgacggcgca
     1621 actgatggtg ccgctggtgg ggattatttt cggcggcgtg gttgaggcgg tggcgacgtt
     1681 tatcgcgtat gaaaacgaaa tgctgcaaat gctcggcgtg tggcagcagg gcgatttttc
     1741 gagcgtgctg ctggggcggt acgagctgct ttggattacg ggcggtttgg cggtgtttgc
     1801 ctatctgatt gccgaccggc tgacgatttt ggggctgggc gagacggtca gcgtgaattt
     1861 gggtttgaac cggacggcgg tgttgtggtc ggggctgatt attgtagcac tgattacatc
     1921 gctggtcatt gtaacggtcg gcaatattcc gtttatcggg ctggtcgtgc cgaacatcat
     1981 cagccgcctg ataggcgaca ggctgcgcca aagcctgcct gcggtggcct tgttgggcgc
     2041 gtctttggtt ttattgtgcg acattatcgg acgcgtgatt gtgtttccgt ttgaaattcc
     2101 ggtctctacg gtttttggtg tgttgggtac ggctttgttt ttgtggcttt tgttaaggaa
     2161 acctgctcat gccgtctgaa aaaaatatcg gttttatggc aggaagcagc cgtccgttgt
     2221 gggttgcctt tgcgctgttg ctggtttcct gcatcctgtt tatgacgctc aacgtcaaag
     2281 gcgattggga ctttgtactg cacctgcgtc tgaccaaact tgccgcgctg ctgatggtcg
     2341 cctatgcggt cggcgtgtcc acgcaactct tccaaacgct gaccaacaat ccgattctga
     2401 ccccttcaat tttgggtttc gattcgctgt atgtgttttt gcagaccttg ctggtgttta
     2461 cgttcggcgg cgtgggctat gcttccctgc cgttgacggg caaattcggc tttgaacttg
     2521 ccgttatgat gggcggctcg ctgctgctgt tttacacgct catccgtcag ggcggacgcg
     2581 atttgccgcg tatgatttta atcggcgtga ttttcgggat tttgttccgc agcctgtcgt
     2641 cgctgctttc gcgcatgatc gaccccgaag aatttacggc ggcgcaggcg aatatgtttg
     2701 ccggattcaa taccgtccac agcgagcttt tgggcatagg cgcgctgatt ctgctcgtca
     2761 gcgcggcggt cgtttggcgc gaacgctacc gcttggacgt acaccttttg gggcgcgacc
     2821 aagccgtcaa tttgggcatc agctacacgc gcaacacctt gtggatactg ctttggattg
     2881 ccgcattggt ggcgacggcg accgccgtgg tcggcccggt aagctttttc gggcttctcg
     2941 ccgcctcgct tgccaaccac ttttccccgt ccgtgcgcca ttccgtccgc ctgccgatga
     3001 cggtttgtat cggcggtatc ctcttggtcg gcggacagac cgtattcgaa cacttcttgg
     3061 gcatgaaggc ggtattaagc gtggtggtcg aatttgcggg cggactcgtt ttcctctatc
     3121 tcgttttaag acacaaaaaa tgacggatgc catctgaacg gcagcccgcc ccgaaaggac
     3181 aaaccatatg acgcaagaac gtttacccga atttttcgac cgcgccccga cgctgaccgt
     3241 acaagacccg cttgccgcat tcctcggcgc ggccgaaaac ggcatcctca cttaccgcta
     3301 cgccgatgcc gtgcgcctgt gcggacattc ctgcccgacc gtctcgggcg cgtacctgat
     3361 ggttatcaaa ggtctgaaag ccctttacgg agaagagctg cccgaacgcg gcggcatcga
     3421 agccgccatg cagggagcgc gcgacgaagg cacggtcggc gtaaccgcgt ccgtcgtcca
     3481 acttctcacc ggcgcagccc ccgaaaccgg cttcggaggc atcggaatgc agggacgctt
     3541 cgcccgccgc aacctcttat cctttggtgt aggcgaaatc aacggcacac tgaccctgcg
     3601 ccgcaaagac aacggcaaaa ccgtcgccgt cggcctcaac gccgccctgc aacccttcgc
     3661 acccgaaatg cgcgacatca tgcccaaagc cgtcagcggc agcgcaagcg cagaagaact
     3721 cgaacgcttc ggacaactct ggcaggcacg cgttaaagca tttttaaccg aatcggcgga
     3781 cgacccgcag ttcgtcatcg tccgcgaagt gtgagcgttc agacggcatt ccgaatttca
     3841 aatgccgtct gaaccccgcc aaacaacaac aaacctacgc ccgacaagca tccgccatga
     3901 ttaccatccg caacgtcagc taccgcatcg gcacacgccc catcctcgac aacgtcagcc
     3961 tcgacatccc cgaaggcggc attaccgccc tcgtcggccc caacggtgcg ggcaaatcca
     4021 ccctgttttc ctttatggcg cggctgcgac cgcttgaaag cggcagcatc gcctaccgag
     4081 gcaaaaatct tgccgatacc cccaccgccg aactcgccaa aaccctgtcc atcctcaccc
     4141 aagaaaacag catcatgagc cgcatcaccg tgcgcgacct gctgatgttc ggccgttacc
     4201 cctaccatca aggcagaccg actgccgaat gccgccgtat cgttaacggt gcaatcgaag
     4261 aattccacct gcaagacctc tccgaccgct acctgaccga gctttccggc ggccaacgcc
     4321 aacgcgccat gattgcgatg gtgttctgcc aaagcaccga ctacgtcctt ttggacgaac
     4381 cgctgaacaa cctcgatatg tatcacgccc gctcgctcat gcaaatcctg cgccggctga
     4441 ccgacgaaca caagcgcacc accgtcgtcg tattgcacga catcaaccag gcagcagcct
     4501 acgccgacca cgtcgtcgcc atgaaaaacg gccaagtcgc catgcagggc aaacccaacg
     4561 atattttcac cgccgcaaac atcaaaaccc tattcgatat ggacgtcgac gtcctcgatt
     4621 acgaaggcaa aaaattggtt atccaccata tctaaatccg acaaaaaggc cgtctgaaca
     4681 ttcagacggc aacccatatc ctgacaaaat taagacacga caccggcaga attgacatca
     4741 gcataatatg cacatattaa cagatattaa tgccgaacta cctaactgca agaattaaat
     4801 aaataaataa ataaataaat a
//
LOCUS       DAXIFS010000141         4814 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.141, whole genome shotgun sequence.
ACCESSION   DAXIFS010000141 DAXIFS010000000
VERSION     DAXIFS010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4814
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.141"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(98..1231)
                     /gene="nrdB"
                     /locus_tag="ACFOCA_001585"
     CDS             complement(98..1231)
                     /gene="nrdB"
                     /locus_tag="ACFOCA_001585"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class Ia ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HFC6988280.1"
                     /translation="MSYSTFPKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQ
                     LSFFWRPEEIDVSRDRIDYANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDD
                     LIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFA
                     FAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQL
                     FKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPI
                     PWINAWLSSDNVQVAPQEVEISSYLIGQIDSEVNTDDLGDFEL"
     gene            complement(1445..2425)
                     /locus_tag="ACFOCA_001586"
     CDS             complement(1445..2425)
                     /locus_tag="ACFOCA_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HFC6988281.1"
                     /translation="MTAARAGLVRFNYLKVKQAVQSKQIKGFKLWKSYDEQLEILRSR
                     GLQIDDEKKALGYLRTIGYYRLSGYFYSFRQFAPESSKSRLDEFITDTRFEDVKSLYM
                     FDKKLRQLALDALERIEVALRVNIAHTLGRHDPLAYKDSKYSATGFDHAEWLDRYNRL
                     VEREKKTGFVKHHLEHYADLPVWVACEVWDFGTMSMLYKGMLNKDKDSIAKLYRLKDG
                     KHLQTHLHAFNFIRNVSAHHSRLWNRDITFKASLKGLSDAEWKSLPINKPFVYFCLMK
                     RMLDVICPRTEWGNRLLALLDEFPDVANEAVSLRDMGLENNPRDWRLWQG"
     gene            complement(2391..4670)
                     /gene="nrdA"
                     /locus_tag="ACFOCA_001587"
     CDS             complement(2391..4670)
                     /gene="nrdA"
                     /locus_tag="ACFOCA_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1a ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HFC6988282.1"
                     /translation="MNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVE
                     LKSHIQFYNGIRTDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPP
                     HLYDHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQ
                     NRVTRQIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVR
                     TPTRQFSSCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEAR
                     HTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQ
                     LDYGVQINRLLYTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK
                     RIIPAADLFSTLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKP
                     LDNINDPNGEIALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTS
                     TMGRRSLGIGVINYAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGA
                     CTLFNQTVYSQGKLPIDTYKKDLDAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPS
                     ETSSQIANATNGIEPPRGLVTVKASKDGILKQVVPEFETLKDAYETLWQLPGNEGYLK
                     LVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHNTRDGA
                     DDTQADIQDDGCAGGACKI"
BASE COUNT         1189 a         1170 c         1135 g         1320 t
ORIGIN      
        1 gaacaataac cgatcctacc cgctgttttt cccatcatac aacatacaaa tgccgtctga
       61 aacatccggc ttcagacggc attttgtcaa aaaacgttta caactcaaaa tcgcccaaat
      121 catccgtatt cacttcagaa tcgatctgac cgatcaaata agaggatatt tccacttcct
      181 gcggcgcgac ctgtacgttg tcggacgaca gccacgcatt aatccacgga atcgggtttt
      241 gatttgcgcc ttcaaatccg gccggcaacc ccaccgcctg catacgcaga ttggtaatat
      301 attcgacgta ttgggataag atttctttgt tcaaaccgat catcgaaccg tccttaaaca
      361 aatatgccgc ccattctttt tcctgttccg ccgctttttt gaagagttgg aaacattcgt
      421 cctgcaactc ggcggcaatt tctgccattt cagaatcatc aacacccgaa cgcatcagat
      481 taagcatatg ctgcgtgccg gtcaggtgca gggcttcgtc gcgggcaatc agtttgatga
      541 ttttggcgtt gccttccatc aactcgcgct cggcaaaagc aaacgagcag gcgaatgaaa
      601 cgtagaaacg gatggcttcc aacacgttga cgcacatcag gcagagatag agttttttct
      661 tcaacccgcg caaagacaca gtaatgggtt ttccgccgac attatgcatc ccttcgccca
      721 acaggttgta atactgggtg tattcgatta agtcatcgta atagcaggca atgtcttcgg
      781 cgcgggcggt aatgtattcg ttttcgacaa tatcatcaaa cacgaccgac ggatcattca
      841 caatattgcg gatgatgtgg gtatagctgc gcgagtgtat ggtttcgctg aagctccacg
      901 tttcaatcca cgtttccagc tcgggaatcg aaaccaaagg cagcaaggca acattcggac
      961 tgcgcccttg gatggaatcg agcagtgttt ggtatttcag attgctgatg aaaatatgtt
     1021 tttcgtgttc aggcaggttg gcgtagtcga tacggtcgcg cgacacgtcg atttcttccg
     1081 gccgccaaaa aaacgacaat tgtttttcaa tcagtttttc aaatacctcg tatttctgct
     1141 ggtcataacg ggcgacattc acaggctgac cgaaaaacat cggctcattc agcgcgtcgt
     1201 ttttggtttt gggaaaggtg ctgtatgaca tgactaggtg ttcgcaggac atggttttct
     1261 caggtttatt taaatttagg aatttggatt tcagacagcc ttatatgttt taagtaaggt
     1321 catctgaatg tatctgtaca ttgaattctt gccttaaata tcgctgttag ttataatctt
     1381 ccccaacaac tcccccaact ttgccaacct acgcggttgg agcaacaagg ttgggggctt
     1441 tcttttatcc ctgccacaat ctccagtctc gcggattatt ttccaaaccc atatcgcgca
     1501 aacttacagc ttcattcgcg acatcgggaa actcatccag taaagcaaga agacggtttc
     1561 cccattcggt tcgcggacaa ataacatcca acatccgttt catcaggcaa aaatacacaa
     1621 acggtttatt gataggcaat gatttccatt ctgcatcaga caaacctttc aagctggctt
     1681 taaaagtaat atccctattc cataatcgac tgtgatgtgc cgaaacgttg cggataaagt
     1741 taaatgcgtg cagatgtgtt tgcagatgct taccgtcttt caaacgatac aatttggcaa
     1801 tagagtcttt atctttattc aacatccctt tatacagcat agacatcgtg ccgaaatccc
     1861 atacttcgca ggctacccag acaggtaagt cggcataatg ttccaaatga tgtttaacaa
     1921 aaccggtttt cttttcgcgc tcgaccagcc tgttatacct atccagccat tccgcatggt
     1981 cgaaacctgt ggcagaatat ttgctatctt tgtaagccaa tgggtcatgc cgtcctaatg
     2041 tatgggcaat atttacccga agcgctactt caattctttc cagtgcatct aatgccaatt
     2101 gccgcaattt cttatcgaac atataaaggc ttttgacatc ttcaaaacga gtatctgtaa
     2161 taaactcatc caacctgctc ttagaacttt caggagcaaa ttgtcggaaa gagtaaaaat
     2221 aaccgcttaa tcggtaataa ccgatggtgc gtaaatatcc taatgccttt ttctcatcat
     2281 caatctgcaa tcctctactt cttagaatct ccaactgctc atcgtaagat ttccaaagct
     2341 tgaagccttt tatctgcttg ctttgcacag cctgtttcac tttcaaatag ttaaatctta
     2401 caagccccgc ccgcgcagcc gtcatcctga atatcggctt gcgtatcgtc cgcgccgtcg
     2461 cgggtgttgt ggtagtacag ggttttgacg ccgtatttgt aagcggtcaa taagtctttg
     2521 agcatttgtt tcatggaaac tttgctgcct tcgaatttgt tcgggtcgta ggcggtattg
     2581 gcggaaatcg attgatcgac gaatttttgc attacgccga caagtttcaa gtagccttcg
     2641 ttgccgggaa gctgccacag ggtttcgtag gcgtctttca gggtttcaaa ttccggtacg
     2701 acttgtttca aaataccgtc ttttgatgct ttgaccgtta ccaatccgcg cggcggctcg
     2761 ataccgttgg tggcgttggc gatttgcgaa ctggtttcag acggcatgag tgcggttaga
     2821 gtagagttac gcaggccgta tttgacgatt tcggcacgca ggctttccca gtcgtaatgc
     2881 aaaggctcgc cgcagacggc atccaaatct tttttgtagg tgtcgatggg cagtttgcct
     2941 tgcgaataaa cggtttggtt aaagagcgta cacgcaccgt attctttggc aaggtttgcc
     3001 gatgctttga gcaggtaata ctgtatggct tcaaaggtac ggtgggtcag accgagcgcg
     3061 gagccgtcgc tgtagcggac accgtttttc gccagataat aagcatagtt aatcacgccg
     3121 atgccgagcg aacggcggcc catagtagag gtacgcgcgg cttctaccgg atatccctga
     3181 taatctaaaa gtgcatcgag cgcacgaacg gtcaagtcgg caagcccttc caattcgtcc
     3241 aagctgttta atgcgcccaa gttaaaggca gacagtgtac acagggcgat ttcgccgttc
     3301 ggatcgttga tattgtccag cggtttggtc ggcagggcga tttccataca caagttggac
     3361 tgatgaacag gcgcgacgcg cggatcgaac gggctgtgcg tattgcagtg atcgacgttt
     3421 tgaatgtaga tgcgcccggt tccggcacgc tcctgcatca gcgtggaaaa caggtcggca
     3481 gccggaatga tgcgcttgcg gatatcaggg tcttgctcgt atttcgtata gagccgctca
     3541 aattcgtctt ggtcggcaaa aaacgcttcg tacaatcccg gaacctcgtt gggcgaaaac
     3601 agcgtaatgt tgccgccctt aatcaggcgg gtgtacagca ggcggttgat ttgcacgccg
     3661 taatcaagct gacggatacg gttgtcttcc acaccgcggt tgtttttcaa caccagcagg
     3721 ctttcggctt cgatatgcca caaggggtag aacaaggttg ccgcgccgcc gcgcacgccg
     3781 ccttgcgaac aggatttgac cgccgcctga aacattttaa agaagggaat gcagccggta
     3841 tgccgcgctt cgccgccccg gatttcgctg tccaaaccgc ggatacgtcc ggcattgatg
     3901 ccgatgcccg cacgctggga aacgtatttc acaatcgcgc tggtagtggc attgatggaa
     3961 tccaaactat cgtcgcattc aatcagcaca cagcttgaga actggcgcgt aggcgtacgc
     4021 acgccgctca taatcggagt cggcagcgat actttaaatg tagaaacggc atcgtaaaac
     4081 cgtttgacgt aacccaagcg cgcctctttc gggtatttgc tgaaaaggca catcgccacc
     4141 aaaacatata aaaactgcgg cgtttcgtaa atttggcggg taacgcggtt ctgtaccaga
     4201 tatttgcctt cgagctgttt gacagcggca taggaaaagg acatatcgcg ttcgtggtcg
     4261 atataggcgt tcagttcgtc aaattcttcg cggctgtaat cctcaaggat atgcctgtcg
     4321 tattttccgg catcggtaag ttttttaacg tggtcgtaaa ggtgcggcgg ctcgtactcg
     4381 ccgtaggcta ttttacgaag atggaaaatc gccaaacgcg cggcaaggta ttggtagtcc
     4441 ggggtatctt ccgaaattaa atcggcagcg gctttgatga tggtttcgtg gatgtcgtcg
     4501 gtgcggatgc cgttgtagaa ctggatgtgc gatttcaact cgacctgaga tacggaaaca
     4561 ttttccaatc cgtccgccgc ccaagtgacg acacggtgaa tcttatccaa atcaatggct
     4621 tctaatcttc cgtctcgttt ggttactttc aaatcagtcg gtgtattcat cgcttcctct
     4681 tccactcttg atattcaaga cacagtcttt tcaaataaat taaggcagac aatatagtgg
     4741 atttttggca ttttctccag tcttgacaac ggttgtattt ttcagtttca ggcaatgcgc
     4801 gataaaaccc gcct
//
LOCUS       DAXIFS010000142         4774 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.142, whole genome shotgun sequence.
ACCESSION   DAXIFS010000142 DAXIFS010000000
VERSION     DAXIFS010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.142"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            248..1147
                     /gene="crgA"
                     /locus_tag="ACFOCA_001588"
     CDS             248..1147
                     /gene="crgA"
                     /locus_tag="ACFOCA_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151940473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator CrgA"
                     /protein_id="HFC6988283.1"
                     /translation="MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEK
                     LGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMP
                     MVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLF
                     DSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHF
                     TASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDK
                     AVNLRLRVFLDFLVEELGNNLCG"
     gene            complement(1374..4589)
                     /gene="carB"
                     /locus_tag="ACFOCA_001589"
     CDS             complement(1374..4589)
                     /gene="carB"
                     /locus_tag="ACFOCA_001589"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFC6988284.1"
                     /translation="MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL
                     ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM
                     EVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFKLDE
                     LRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQ
                     ESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEI
                     CAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEV
                     REHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLR
                     QPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSE
                     DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEE
                     IQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLA
                     KVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGV
                     GASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQVLGYGICATRGTA
                     QYLTEQGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQ
                     QRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN"
BASE COUNT         1053 a         1239 c         1286 g         1196 t
ORIGIN      
        1 atattcattt gttacctcgt ttgtgaattg atgaatgtat tgtgccgttt tactttataa
       61 tttaaaagtg caaaaataag aaaacacttt tgcgtccaaa tgaaataatc agatgtttca
      121 acacacggga tgacacataa agcgtctccc tatgtgccgt cctgattcgg aaggggttac
      181 acccctccca aataaagtct gatcctgccg ccctaaaggg cggggttcca accgaaaagg
      241 aaacacgatg aaaaccaatt cagaagaact gaccgtattt gttcaagtgg tggaaagcgg
      301 cagcttcagc cgtgcggcgg agcagttggc gatggcaaat tctgccgtaa gccgcatcgt
      361 caaacggctg gaggaaaagt tgggtgtgaa cctgctcaac cgcaccacgc ggcaactcag
      421 tctgacggaa gaaggcgcgc aatatttccg ccgcgcgcag agaatcctgc aagaaatggc
      481 agcggcggaa accgaaatgc tggcagtgca cgaaataccg caaggcgtgt tgcgcgtgga
      541 ttccgcgatg ccgatggtgc tgcatctgct ggcgccgctg gcaacaaaat tcaacgaacg
      601 ctatccgcat atccgacttt cgctcgtttc ttccgaaggc tatatcaatc tgattgaacg
      661 caaagtcgat attgccttac gggccggaga attggacgat tccgggctgc gtgcacgcca
      721 tctgtttgac agccgcttcc gcgtaatcgc cagtcctgaa tacctggcaa aacacggcac
      781 gccgcaatct acagaagagc ttgccggtca ccaatgttta ggcttcaccg aacccggttc
      841 tctaaataca tgggcggttt tagatgcgca gggaaatccc tataagattt caccgcactt
      901 taccgccagc agcggtgaaa tcttacgctc gttgtgcctt tcaggttgcg gtattgcttg
      961 cttatcagat tttttggttg acaacgacat cgctgaagga aagttaattc ccctgctcgc
     1021 cgaacaaacc tccgataaaa cacacccctt taatgctgtt tattacagcg ataaagccgt
     1081 caacctccgc ttgcgcgtat ttttggattt tttagtggag gaactgggaa acaatctctg
     1141 tggataattc tataaaaacc tgccataaaa ttgtttttac tcacttaata actttgagaa
     1201 aaaataaata agatgatgta tagccggcgg caatggcagt ctatatgggg agcgtgatag
     1261 ggctgttcct tatgtacggc ttgtgtgtgg caacatcggc tttccaaatg acaaaatgcc
     1321 gtctgacacc gtaaaaaaag gtttcagacg gcattttcaa cctgattcag gcatcagttg
     1381 cggtttttca aacgcccgtg caactcttga acgctgtaca cgcccagatg gtctcggctt
     1441 ttcgcacctt cgctcatcgc ttcgccgccg gcagtggtgg tgtattgcgg cacacgttgc
     1501 tgcaatgcgc tttggcggat gatgtggctg tcggacacgg attgcggatc gctggaaacg
     1561 gtattcacga ccagtgcgat ttcaccgttt ttcagtgcgt cgccgatgtg cgggcggcct
     1621 tcggggactt tattgatggt ttgtacaatc agtccctgtt cggtcaggta ttgcgccgtg
     1681 ccgcgtgtgg cgcagatgcc gtagcctaaa acctggaagt ttttagcggt tttgataacg
     1741 cgttctttgt cttcttcgcg cacggagagg aagattttgc cggtcgggtt gaggcgttcg
     1801 cccgcaccga gttgggcttt gtagtaggct tcgccgaagc ttgcgcccac gcccatcact
     1861 tcgccggtgg agcgcatttc cggtcccaaa atcgtgtcta cgcccgggaa tttgatgaat
     1921 gggaacacgg cttctttaac ggcatagaaa tcggggacaa cttctttttc cacgccttgt
     1981 tctttcaggg aaatacctgc catgcagcgt gcgccgactt tggcgagcgg cacgccggtg
     2041 gctttggaga cgaagggcac ggtacggctg gcgcgcgggt tcacttccaa cacgaacacc
     2101 acgccgtcct gcacggcaaa ctgcacgttc atcagaccga ccacgcccag cgcgtacgcc
     2161 atcgctttgg tttggcggcg gatttcgtct tggatttctt cgcttaagga gtagggcggc
     2221 agcgagcagc cggagtcgcc ggagtggatg cccgcctgtt cgacgtgctg cataatgccg
     2281 ccgataacca cgtctttgcc gtctgaaacg cagtccacat cgacttcaat cgcgttgttg
     2341 aggaagaaat cgagcaacac ggggctgtct tcggaaacct gcacggcttc gcgcatgtat
     2401 ttttgcaagg cttcggcaga gtggacaatc tgcatggcgc ggccgcccaa aacataagac
     2461 gggcgcacga ccagcggata gccgatttct tcggctttga cgagtgcttc ttcttcgttg
     2521 tgggcgatgc ggttgggcgg ttggcgcaga cctaagtcgt tcaacacttt ttggaagcgt
     2581 tcgcggtctt cggcggcgtc gatgctgtcg gcggatgtgc cgatgatgtt tacgccgttt
     2641 tcaaccagcg cgttggcgag tttgagcggg gtttgaccgc cgtaatgcac aatcacgccc
     2701 cacgggtttt cggtgcggac gatttccaac acgtcttcca atgtcagcgg ctcgaaatag
     2761 aggcggtcgc tggtgtcgaa gtcggtggac acggtttctg ggttgcagtt caccataatc
     2821 gtttcaaagc ccgattcgcg cagggcgagt gcggcgtgaa cgcagcagta gtcaaactcg
     2881 atgccctgac cgatgcggtt cgggccgccg ccgagaatca tcactttttt acggtcggaa
     2941 ggacgggatt cgcattcttc ttcgtaagtg gagtaaagat aggcggtttc ggtggcgaac
     3001 tcggcggcgc aggtgtcaac gcgtttgtaa accggatgca gcttcagcgc gtagcggtgt
     3061 tcgcgcactt ctttttcgct tacgttcaac aattgtgcca aacgtttgtc ggagaagcct
     3121 ttgcgtttca gacggcgtag ggcggcgaaa tccaaatcac tcaaaatgcc gtctgaaacc
     3181 gctttttctt ccttcatcaa gtcttcgatt tgcgccagga accaagggtc gatggcgcag
     3241 atttcgtgga tttcttccag cgtgaagccg gcgcggaacg cgtctgccac aaacagcata
     3301 cgttcggggc cggggtttgc cagttcgcgg cggatttccg ctttgtcgga gcttctcgga
     3361 ttgaagccgc acaagcctgt ttccaagccg cgcagggctt tttggaagct ttcctgaatc
     3421 gtgcggccca tcgccatcac ttcgcccacg gatttcatct gcgtggtcag gcggtcgtct
     3481 gcggcaggga atttttcaaa cgcaaaacgc gggattttgg ttaccacata gtcgatggac
     3541 ggctcgaatg acgcgggggt tttgccgccg gtgatgtcgt tgcgcaactc gtccagctta
     3601 aagccgaccg ccagtttcgc cgccaccttc gcaatcggga agcccgtcgc tttggaagcc
     3661 agcgcggacg aacggctcac gcgcgggttc atctcaatca caatcatctc gccgttttca
     3721 gggttcaccg caaactgcac gttcgagccg ccggtatcca cgccgatttc gcgcaatact
     3781 gccaacgaag cattacgcat gatttggtat tctttgtccg tcagcgtttg cgcaggcgca
     3841 accgtaatcg agtcgcccgt atgcacgccc atcgggtcga agttttcaat cgagcagata
     3901 atgatgcagt tgtcgttctt gtcgcgcacc acttccatct cgtactcttt ccagccgaga
     3961 acagactgct caatcagcag ctcgtgcgta ggcgacgcat cgaaaccgcg ttcgcaaatc
     4021 gccaaaaact catctttatt gtaggcaatg ccgccgcccg aaccgcccat cgtgaaagac
     4081 ggacgaatca gggtagggaa gccgacctgt tcttgcgctg ccaaagcttc gttcatcgtg
     4141 tggcagacaa aagatttcgg gcaggagagg ccgatttttt ccatcgcttc tttaaaacga
     4201 ccgcggtctt ccgccttgtc aatcgcgtct tccgtcgcgc cgatcagctc gacattgtat
     4261 ttcgccagca cgccgttgcg cgccaaatcc agcgcacagt tcagcgcggt ctgaccgccc
     4321 atcgtgggca gaatcgcatc aggacgctcc ttggcgataa tcttctccac cgtctgccac
     4381 ataattggct cgatgtaggt aacatccgcc atttcagggt cggtcatgat ggtggcgggg
     4441 ttggaattca ccagaatgac tttatagcct tcttcacgca aagccttaca ggcctgtgcg
     4501 cccgaatagt caaattcgca ggcctgaccg ataacgatag ggccggcgcc gatgataagg
     4561 atggatttta ggtcggtacg tttgggcatg ggtggttact cttgaattaa agaaggttgt
     4621 tttgttacat agcttttaag aaaagtattt cccttttcta aaattgaagc taaaacatca
     4681 tcttctatgt tagataaaat attctctaaa tctgcgcttg atttaatttt aaagaattct
     4741 tttgtttgag aatggtatac aagagaaggt ttat
//
LOCUS       DAXIFS010000143         4730 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.143, whole genome shotgun sequence.
ACCESSION   DAXIFS010000143 DAXIFS010000000
VERSION     DAXIFS010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.143"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            297..995
                     /locus_tag="ACFOCA_001590"
     CDS             297..995
                     /locus_tag="ACFOCA_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6988285.1"
                     /translation="MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGL
                     VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH
                     VVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
                     FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTID
                     LLADKVREEQKAAQ"
     gene            complement(1052..2056)
                     /gene="amgK"
                     /locus_tag="ACFOCA_001591"
     CDS             complement(1052..2056)
                     /gene="amgK"
                     /locus_tag="ACFOCA_001591"
                     /EC_number="2.7.1.221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate/N-acetylglucosamine kinase
                     AmgK"
                     /protein_id="HFC6988286.1"
                     /translation="MQRQIKLKNWLQTVYPERDFDLSFAAADADFRRYFRATFSDGGS
                     VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQILHADTDLGFVVLNDLDNTTFLTAMLQE
                     QGETAHKALLLEAIGELVELQKASRKGVLPEYDRETMLREINLFPEWFVAKELGRELT
                     FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
                     LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
                     GIFARLYYRDGKDKYRPEIPRFLNYLHRVSRRYAELAPLYALLVELVGDEELETGFTF
                     "
     gene            2126..4534
                     /locus_tag="ACFOCA_001592"
     CDS             2126..4534
                     /locus_tag="ACFOCA_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFC6988287.1"
                     /translation="MARLFSLKPLVLALGFCFGTHCAAADAVAAEETDNPTAGGSVRS
                     VSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVQGSGEASIPEDYTRIVADRMEGQSQ
                     VQVRAEGNVVVERNRTTLNADWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQ
                     QTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASV
                     EADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVP
                     YYFNLAPNLDATFAPGVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQ
                     AKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGG
                     SLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSR
                     QDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDS
                     GATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYY
                     GNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRS
                     DWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKI
                     YLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGC
                     WGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGR
                     NKRP"
     gene            4531..>4730
                     /locus_tag="ACFOCA_001593"
     CDS             4531..>4730
                     /locus_tag="ACFOCA_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988288.1"
                     /translation="MTVGNPAGAPFPHKTAFHRQPQTRHQRQDSNDKERMMKIKALMI
                     AAALLAAADVHAAPQKAKTASA"
BASE COUNT         1146 a         1443 c         1239 g          902 t
ORIGIN      
        1 ttgaaagggg tgtaaccctt ccgaaccagg gcaacgcata gggcggtgct ttatgtgccg
       61 tcctgtgtgt tggaacatca ttagttcccc aacagccgta tccgtccggg gcaacggcgc
      121 gtattgtacg acagaaaccg cttcagacgg catcgggttt gatgccgtct gaagcggttt
      181 cccgaaacga aaacgtcctt ttccggcggc aaactgtatc aacacgcgga aatgcaataa
      241 aatagccgga ttccgattga tttccaacat tcatttccaa catcacggag agccgtatga
      301 aatccagaca cctcgccctc ggcgttgccg ccctgttcgc ccttgccgcg tgcgacagca
      361 aagtccaaac cagcgtcccc gccgacagcg cgcctgccgc ttcggcagcc gccgccccgg
      421 cagggctggt cgaagggcaa aactataccg tccttgccaa cccgattccc caacagcagg
      481 caggcaaagt cgaagtcctt gagtttttcg gctatttctg tccgcactgc gcccacctcg
      541 aacctgtttt aagcaaacac gccaagtctt ttaaagacga tatgtacctg cgtaccgaac
      601 acgtcgtctg gcagaaagaa atgctgacgc tggcacgcct cgccgccgcc gtcgatatgg
      661 ctgccgccga cagcaaagat gtggcgaaca gccatatttt cgatgcgatg gtcaaccaaa
      721 aaatcaagct gcaaaatccg gaagtcctca aaaaatggct gggcgaacaa accgcctttg
      781 acggcaaaaa agtccttgcc gcctacgagt cccccgaaag ccaggcgcgc gccgataaaa
      841 tgcaggagct gaccgaaacc ttccaaatcg acggtacgcc cacggttatc gtcggcggta
      901 aatataaagt tgaatttgcc gactgggagt ccggtatgaa caccatcgac cttttggcgg
      961 acaaagtacg cgaagaacaa aaagccgcgc agtaagcccg tttgaaaaat gccgtctgaa
     1021 acttggtttt cagacggcat tttgattggg tttaaaacgt aaagcccgtt tccagttctt
     1081 catcgccgac cagttcgacc aagagcgcgt agagcggggc gagttcggca taacggcgcg
     1141 atacgcggtg cagatagttt aagaaacgcg ggatttcggg acggtatttg tctttgccgt
     1201 cgcggtagta caggcgtgcg aagatgcctg caaccttcaa gtgccgctgc acgcccatcc
     1261 attcgaacca gcggtaaaac tcgtcaaacg cttcggggac gggcaagccg gcagcccgcg
     1321 ccttttccca gtagcggata accaagtcca agacaaattc ttcttcccat tcgataaagg
     1381 catcgcgcaa cagcgacacc aaatcgtagg aaatcgggcc gtaaagcgcg tcttggaagt
     1441 ctaaaacgcc cggcctgccg cgcgtcagca tcaggttgcg gacgataaag tcgcggtgca
     1501 catagacttt gggctgcgcc aacaggggcg gcagcagcgt atcgacggtt tgctgccaaa
     1561 gttggcgttg tttgaatgtt aattcgcgcc ccaattcttt tgcgacaaac cattccggga
     1621 acaggttgat ttcgcgcaac atcgtttcac ggtcatattc gggcaaaacc cctttacggc
     1681 tcgccttctg caattcgacc aactcgccga tggcctccaa aagcagggct ttgtgcgccg
     1741 tttcgccctg ttcctgaagc atcgcggtca aaaacgtcgt attgtccaag tcgttcaata
     1801 ccacaaaccc caaatccgtg tccgcgtgca atatctgcgg cacattgacc atgtcaaaca
     1861 gtttctgcac ttttaaataa ggcgcgacac tcatcttgtc gggcggcgcg tccatacaga
     1921 cgacgctgcc gccgtctgaa aacgttgcac gaaaatagcg gcggaaatca gcatccgccg
     1981 ccgcgaagga cagatcgaag tcccgttcgg gataaacggt ctgaagccaa tttttcagtt
     2041 tgatttgtcg ttgcataaca gtactaaagc atttcaggtt acaataaacg ctattttaac
     2101 tggcaaaccg acttgagggg cgattttggc tcgtttattt tcactcaaac cactggtgct
     2161 ggcattgggc ttctgcttcg gcacgcattg cgccgctgcc gatgccgttg cggcggagga
     2221 aacggacaat ccgaccgccg gaggaagcgt tcggagcgtg tccgaaccca tacagcctac
     2281 cagcctgagc ctcggttcga cctgcctgtt ttgcagtaac gaaagcggca gccccgagag
     2341 aaccgaagcc gccgtccaag gcagcggcga agcatccatc cccgaagact atacgcgcat
     2401 tgttgccgac aggatggaag gacagtcgca ggtgcaggtg cgtgccgaag gcaacgtcgt
     2461 cgtcgaacgc aaccggacga ccctcaatgc cgattgggcg gattacgacc agtcgggcga
     2521 caccgttacc gcaggcgacc ggttcgccct ccaacaggac ggtacgctga ttcggggcga
     2581 aaccctgacc tacaatctcg agcaacagac cggcgaagcg cacaacgtcc gcatggaaac
     2641 cgaacacggc ggacggcggc tgcaaagcgt cagccgcacc gccgaaatgt tgggcgaagg
     2701 gcattacaaa ctgacggaaa cccaattcaa cacctgttcc gccggcgatg ccggctggta
     2761 tgtcaaggcc gcttccgtcg aagccgatcg ggaaaaaggc ataggcgttg ccaaacacgc
     2821 cgccttcgtg ttcggcggcg ttcccatttt ctacacccct tgggcggact tcccgcttga
     2881 cggcaaccgc aaaagcggcc tgcttgttcc ctcactgtcc gccggttcgg acggcgtttc
     2941 cctttccgtt ccctattatt tcaaccttgc ccccaatctc gatgccacgt tcgcgcccgg
     3001 cgtgatcggc gaacgcggcg cggtctttga cgggcaggta cgctacctgc ggccggatta
     3061 tgccggccag tccgacctga cctggctgcc gcacgacaag aaaagcggca ggaataaccg
     3121 ctatcaggcg aaatggcagc atcggcacga catttccgac acgcttcagg cgggtgtcga
     3181 tttcaaccaa gtctccgaca gcggctacta ccgcgacttt tacggcaaca aagaaatcgc
     3241 cggcaacgtc aacctcaacc gccgtgtatg gctggattat ggcggcaggg cggcgggcgg
     3301 cagcctgaat gccggccttt cggttctgaa ataccagacg ctggcaaacc aaagcggcta
     3361 caaagacaaa ccgtatgccc tgatgccgcg cctttccgcc gattggcgca aaaacaccgg
     3421 cagggcgcaa atcggcgtgt ccgcacaatt tacccgcttc agccacgaca gccgccaaga
     3481 cggcagccgc ctcgtcgtct atcccgacat caaatgggat ttcagcaaca gctggggtta
     3541 cgtccgtccc aaactcggac tgcacgccac ctattacagc ctcaaccgct tcggcagcca
     3601 agaagcccga cgcgtcagcc gcactctgcc cattgtcaac atcgacagcg gcgcaacttt
     3661 tgagcggaat acgcggatgt tcggcggcgg agtcctgcaa accctcgagc cgcgcctgtt
     3721 ctacaactat attcctgcca aatcccaaaa cgacctgccc aatttcgatt cgtcggaaag
     3781 cagcttcggc tacgggcagc tctttcgcga aaacctctat tacggcaacg acaggattaa
     3841 caccgcaaac agcctttccg ccgccgtgca aagccgtatt ttggacggcg cgacggggga
     3901 agagcgtttc cgcgccggca tcggtcagaa attctatttc aaggatgatg cggtgatgct
     3961 tgacggcagc gtcggcaaaa aaccgcgcaa ccgttccgac tgggtggcat ttgcctccgg
     4021 cagcatcggc agccgcttca tcctcgacag cagcatccac tacaaccaaa acgacaaacg
     4081 cgccgagaac tacgccgtcg gtgcaagcta ccgtcccgca cagggcaaag tgctgaacgc
     4141 ccgctacaaa tacgggcgca acgaaaaaat ctacctgaag tccgacggtt cctattttta
     4201 cgacaaactc agccagctcg acctgtccgc acaatggccg ctgacgcgca acctgtcggc
     4261 cgtcgtccgt tacaactacg gttttgaagc caaaaaaccg atagaaatgc tggcgggtgc
     4321 ggaatacaaa agcagttgcg gctgctgggg cgcgggcgtg tacgcccaac gctacgttac
     4381 cggcgaaaac acctacaaaa acgctgtctt tttctcactt cagttgaaag acctcagcag
     4441 tgtcggcaga aaccccgcag acaggatgga tgtcgccgtt cccggctata tccccgccca
     4501 ctctctttcc gccggacgca acaaacggcc ctgaccgtcg gaaacccggc aggagcaccg
     4561 ttcccgcaca agacggcatt ccaccgacaa ccccaaaccc gccatcaaag gcaggattca
     4621 aacgataagg aaagaatgat gaaaatcaaa gccctgatga ttgccgccgc attgctggca
     4681 gcagccgatg tccacgccgc accgcaaaag gcaaaaaccg catccgccaa
//
LOCUS       DAXIFS010000144         4719 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.144, whole genome shotgun sequence.
ACCESSION   DAXIFS010000144 DAXIFS010000000
VERSION     DAXIFS010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4719
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.144"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            66..2441
                     /gene="rnr"
                     /locus_tag="ACFOCA_001594"
     CDS             66..2441
                     /gene="rnr"
                     /locus_tag="ACFOCA_001594"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HFC6988289.1"
                     /translation="MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVP
                     SKIESLARELSITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHK
                     DGFGFAVPLTPAKDGDFVLYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQ
                     SKVVGRFYMDRGVAILEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRP
                     AVAKIIEVLGDYADSGMEIEIAVRKHHLPHQFSEACAKAAKKIPVHVRKSDLKGRVDL
                     RDLPLVTIDGETARDFDDAVFAEKVGRNYRLVVAIADVSHYVRPDDVIDADAQERSTS
                     VYFPRRVIPMLPENLSNGICSLNPDVERLCMVCDMVVTYAGNIKEYRFYPAVMRSHAR
                     LTYNQVWKWISDGIDHPYKAQIDTLYKLFKILQKKRFERGAVEFESVETQMIFDDNGK
                     IEKIVPVVRNDAHKLIEECMLAANVCAADFLLKNKHTALFRNHLGPTPEKLATLREQL
                     GLLGLQLGGGDNPSPKDYAALVEQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLA
                     YEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPKKSWQALGVHTSFCERRADDASRD
                     VENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDGIHIDGLVHISDLGEDYFNFRPE
                     IMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLIAGGSGRGRKVKSSASAKPAG
                     TAGKGKPKTAAEKKTARGGKVRGRGASAAAESRKKAKKPVPIKVKKRKGKS"
     gene            complement(2780..4243)
                     /gene="guaB"
                     /locus_tag="ACFOCA_001595"
     CDS             complement(2780..4243)
                     /gene="guaB"
                     /locus_tag="ACFOCA_001595"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003767939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFC6988290.1"
                     /translation="MRIVEKAYTFDDVLLVPAHSTVLPRDVKLQTKLTREITLNLPLL
                     SAAMDTVTEARLAISMAQEGGIGIIHKNMPPEMQARAVSKVKRHESGVVKDPVTVAPT
                     TLIREVLEMRAQRKRKMSGLPVVENGKVVGIVTNRDLRFENRVDLPVSAIMTPRERLV
                     TVPEGTSIDEARELMHTHKVERVLVLNEKDELKGLITVKDILKTTEFPNANKDSEGRL
                     RVGAAVGTGGDTEERVKALVEAGVDVIVVDTAHGHSQGVIDRVRWVKETYPHIQVIGG
                     NIATAKAALDLVAAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIHNVAEALKGTGVP
                     LIADGGIRFSGDIAKALAAGAYSVMLGGMFAGTEEAPGEIELYQGRSYKSYRGMGSLG
                     AMSQGSADRYFQDKTDSTDKYVPEGIEGRVPYKGPIVNIIHQLTGGLRSSMGYLGCAN
                     IAEMHEKAEFVEITSAGMSESHVHDVQITKEAPNYHR"
     gene            complement(4444..4524)
                     /locus_tag="ACFOCA_001596"
                     /pseudo
     CDS             complement(4444..4524)
                     /locus_tag="ACFOCA_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798803.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1098 a         1185 c         1291 g         1145 t
ORIGIN      
        1 gtacagtgtc ctgccgcaaa gaagtcgcta ttatatagtt cataaagaga atgtcaacag
       61 tccaaatgaa taaaaatatt aaatctttaa atttacggga aaaagacccg tttttaagtc
      121 gtgaaaaaca gcgttatgaa catcctttgc ccagtcggga atggataatc gaattgttgg
      181 agcgcaaagg tgtgccttca aaaatcgaat cgcttgcgcg cgagctgtcg attacggaag
      241 acgagtatgt ctttttcgaa cgccgtctga aggcgatggc gcgggacggt caggttttaa
      301 tcaaccgccg gggcgcggtt tgcgcggcgg acaaattgga tttggtcaaa tgccgtgtcg
      361 aggcgcacaa agacggtttc ggttttgccg tgccgctcac gcccgccaaa gacggtgatt
      421 ttgttttgta tgaacgccag atgcgcggca ttatgcacgg cgatattgtc actgttcgtc
      481 ctgccggcat ggaccgtagg ggccgccgcg aagggacagt tctggatatt gtcgaacgcg
      541 cgcaaagcaa agtggtcggc cgtttctata tggatagggg cgtggcgatt ttggagccgg
      601 aagacaagcg tctgaaccaa agcatcgtat tggaaccgga cggcgtggcg cgtttcaaac
      661 ctgaatccgg tcaggtcatc gtcggcgaaa ttgaggttta tcctgagcaa aaccggccgg
      721 cagtggcaaa aatcatcgaa gttttgggcg attatgccga cagcggcatg gagattgaaa
      781 ttgccgtgcg caagcatcat ttgccgcacc aattcagtga agcgtgtgcc aaagctgcga
      841 aaaaaattcc cgtccatgta cgcaaaagcg atttgaaagg ccgcgtcgat ttgcgcgacc
      901 tgcctttggt aacgatagac ggcgaaacgg cgcgcgattt cgacgacgcg gtgtttgccg
      961 aaaaagtcgg acgcaattac cgtctagtcg tggcgattgc ggatgtcagc cattatgtcc
     1021 gccctgacga tgtgattgat gcagatgctc aagaacgcag taccagcgta tatttcccgc
     1081 gccgtgtgat tccgatgctg ccggaaaacc tgtctaacgg catttgctcg ctcaatcccg
     1141 atgtcgagcg tttgtgtatg gtgtgcgata tggtcgttac ctatgcgggc aatatcaaag
     1201 aataccgctt ctaccccgcc gtaatgcgct ctcatgcccg cctgacctac aaccaagttt
     1261 ggaaatggat ttcagacggc atcgaccatc cgtacaaagc ccaaatcgac accctttaca
     1321 aactcttcaa aatccttcag aaaaagcgtt tcgaacgcgg cgcggtggag tttgaaagcg
     1381 tcgaaaccca gatgattttc gatgacaacg gcaaaatcga aaaaatcgtc cccgttgtcc
     1441 gcaacgatgc ccacaagctg attgaagaat gtatgctggc ggcgaatgtt tgcgcagcgg
     1501 atttcctgtt gaaaaacaag catacggctt tgttccgcaa ccatttgggc cccacgcccg
     1561 aaaaactcgc caccctgcgc gagcagctcg gtctgttggg gcttcaactt ggcggcggcg
     1621 acaacccgtc gccgaaagac tatgccgcgc ttgtcgaaca attcaaaggc agacctgatg
     1681 ccgaattgct gcaagtcatg atgttgcgct ccatgcagca ggcggtttac gaaccgcatt
     1741 gcgacggaca ctttggtctt gcctacgaag catacgccca cttcacctcg cccatccgcc
     1801 gctatcccga cctgaccgta caccgcgcca tcaaagccgt gttgaatcag caaacctaca
     1861 cgccaaaaaa aagctggcag gctttgggcg tgcatacctc gttctgtgag cgccgtgccg
     1921 acgacgccag ccgcgacgtg gaaaactggc tgaaaaccta ttatatgcgc gataaggtcg
     1981 gcgaagtatt cgaaggtaaa atctccggca tgaccagttt tggtatcttt gtaacactgg
     2041 acggcatcca cattgacggc ttggtgcata tcagcgattt gggcgaagac tatttcaact
     2101 tccgccccga aatcatggca atcgaaggcg aacgcagcgg catccgtttc aacatggggg
     2161 acagggttgc cgtccgggtc gcccgtgccg atttggatga cggaaaaatc gattttgtcc
     2221 tgattgccgg ggggagcggc agggggcgga aagttaaatc atccgcgtct gccaaaccgg
     2281 cagggacggc ggggaaaggg aagccgaaaa ccgccgccga gaaaaaaaca gcccgaggcg
     2341 gcaaagtaag gggaaggggc gcgtctgccg ccgcagaatc gaggaaaaag gcaaagaaac
     2401 cggttccgat taaggtaaaa aaacggaaag gcaaatcata atgctgacgg ggtggcttga
     2461 ggaggcgggg catattttcc cgaagcctcc acccgatttt ttgatgtggg cggacggagc
     2521 gttatttcca gcaaattgaa acgcccgtat tgaaagattg cgtttatttc caccgccgtt
     2581 ttaaaggccg gcggtattcg gcagacgggg cgcaaacggc gttcagacgg cattttcatt
     2641 ctttcggcgt gtccgtccga attgctttgc ccgtccgcgc aatcagcccg tgcggcttgc
     2701 cttgaacgga caaaaaatgc cgtctgaaac ccgaaaatca ggtttcagac ggcatttttc
     2761 cttgaaaagg ctgttcaaat cagcgatggt agttcggtgc ttctttggta atttgaacgt
     2821 cgtgaacgtg cgattcgctc atacctgcgg aagtgatttc cacaaattct gctttttcgt
     2881 gcatttcggc aatattggcg caacccaaat accccatgct ggagcgcagt ccgccggtca
     2941 gttggtggat gatgttcaca atcgggcctt tgtaaggaac gcggccttcg atgccttcgg
     3001 ggacgtattt gtcggtgctg tcggttttgt cttggaagta gcggtcggca gaaccttggc
     3061 tcatcgcgcc caaggaaccc ataccgcgat aggatttgta tgagcggcct tggtagagtt
     3121 cgatttcgcc cggcgcttct tccgtgcctg caaacatacc gccgagcatg acgctgtacg
     3181 cgcctgcggc gagggctttg gcgatgtcgc cggagaagcg gatgccgcca tcggcaatca
     3241 gcggaacgcc cgtgcctttg agggcttcgg caacgttgtg aatggcggtc agttgcggca
     3301 cgccgacacc tgccacgata cgggtggtgc aaatcgatcc cggaccgata ccgactttga
     3361 cggcatccgc gccggcggcg accaaatcca aagcggcttt ggcagtggcg atgttgccgc
     3421 cgatgacttg gatgtgcgga taggtttctt tgacccaacg cacgcggtcg atcacgcctt
     3481 ggctgtgccc gtgggcggta tcgacgacaa tcacgtccac gccggcctca accaaggctt
     3541 tgacgcgctc ttcggtgtcg ccgccggtgc cgactgccgc accgacgcgc agacggcctt
     3601 cggagtcttt gttggcattg ggaaactcgg tggtttttaa aatatctttg acggtaatca
     3661 gacctttgag ttcgtctttt tcgttcagaa ccaaaacgcg ctcgactttg tgcgtgtgca
     3721 tcagttcgcg cgcttcgtct atgcttgtgc cttcggggac ggtaaccaga cgttcgcgcg
     3781 gggtcataat ggcggaaacg ggcaaatcga cgcggttttc aaaacgcagg tcgcggttgg
     3841 ttacgatgcc gacgactttg ccgttttcaa cgacgggcag gccggacatt ttgcgtttgc
     3901 gctgcgcacg catttccaag acttcgcgga tgagcgttgt cggtgcaacg gttacggggt
     3961 ctttgaccac gccgctttcg tggcgtttca ctttggaaac ggcgcgcgcc tgcatttcgg
     4021 gcggcatgtt tttatggatg atgccgatgc cgccttcttg tgccatcgaa atggcgaggc
     4081 gcgcctcggt aacagtgtcc atcgcggcgg aaagcagggg gaggttgagt gtgatttcgc
     4141 gggtgagctt ggtttgaagt ttaacgtctc gcggcagcac ggtcgaatgt gcgggaacca
     4201 acaaaacatc gtcgaaagta taggcttttt ctacgatacg cataatgctc ggtctttcag
     4261 tttgtgcaag atgcacggca ttatagcacg ttaccggcgg cttgacagtt tatcaggttt
     4321 aattttggtc ccctttgaat agctcggttt tcctttgccg accactgttg ctcccgttct
     4381 ttcaatttca ggaaaagctt ttttctaatt tttggtaagt ggctcagtta ttgaagccct
     4441 atatcgggcg gtaacttcca gcacaaaaaa acggagtagt tctttattta ttttttcctt
     4501 taattttcag tatattatct taatatttcg agggtaacat atctgctaat ctagttacag
     4561 ccccatatat tatagattca attgaaaaat aacagattca actgtacctt tcttatacct
     4621 gatttcttta aagtttttcc cattgtcaaa actataaaaa agtctctctt cctcaccaga
     4681 atatcccatt tctaatacta aacaatctat ttcacaatt
//
LOCUS       DAXIFS010000145         4686 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.145, whole genome shotgun sequence.
ACCESSION   DAXIFS010000145 DAXIFS010000000
VERSION     DAXIFS010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4686
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.145"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(40..1335)
                     /locus_tag="ACFOCA_001597"
     CDS             complement(40..1335)
                     /locus_tag="ACFOCA_001597"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HFC6988291.1"
                     /translation="MIRPDFQEYLPSYYFSSVNPHTVYPKLQCRLKTDTCIIGGGLSG
                     LCTALPLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMEEIEKQVGLEQAQWFW
                     QQSLQAVELVDERVRKHAIDCDWQRGYATVAIRSQHWEELQQWHEHAQKYYGATHYQL
                     WDNTELKQQLDSDMYQGAQFDPLSGHLHPLNYTLGIARAAAEAGTKIFEHSPMIRIEP
                     YQNGWLVYTPEGSVECKNLVYAVNTYAGLNPIFQPLERKAIAVSTFIIATEPLGARAK
                     GLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPARMTELVRQDMLKVFPQL
                     DDVKIEYSWGGECDITANLVPHFGRLAANVFYAQGYSGHGMAITGIAGLAVAEAILGD
                     ECRLKPFERLRQPNIILQPFLRKLGSFLGSKYYQWKDSR"
     gene            complement(1461..2348)
                     /locus_tag="ACFOCA_001598"
     CDS             complement(1461..2348)
                     /locus_tag="ACFOCA_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6988292.1"
                     /translation="MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGG
                     FSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVLGTLAGYAMARIKRFRGSTLFAG
                     MISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
                     TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLV
                     ITSFLSGPGSSTLPQVIFSKIKLGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKR
                     DREAAEAYRQEKLAAEKAN"
     gene            complement(2348..3313)
                     /locus_tag="ACFOCA_001599"
     CDS             complement(2348..3313)
                     /locus_tag="ACFOCA_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6988293.1"
                     /translation="MNLNKLKNKLFRRPGQRVVIAVPYIWLLVLFLIPFAIVLKISFA
                     EQEIAIPPFTPLTSIDEDLGRLNITISYQNYADIFQNFWHTLNPFGDSENSNIYLMTY
                     WSSIKTALMTTVICLLVGYPTAYAISRANPSVRNGLLLAIMLPFWTSFLLRVYAWMGL
                     LGHNGIVNNLLIKMGIISEPLDLFYNAFSLNLVMVYAYLPFMILPLYTQLVKLDNRLL
                     EAASDLGAGPVKSFLTITLPLSKTGIIAGSMLVFVPAVGEFVIPELVGGSENLMIGKV
                     LWQAFFDQNNWPLASAVAVVMVALLVVPIALFQHYENRELEEGAK"
     gene            complement(3329..4453)
                     /gene="potA"
                     /locus_tag="ACFOCA_001600"
     CDS             complement(3329..4453)
                     /gene="potA"
                     /locus_tag="ACFOCA_001600"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HFC6988294.1"
                     /translation="MTATTASSAKPYLQIQGLVKKFGDNYAVDNIDLDIYQHEIFALL
                     GSSGSGKSTLLRMLAGMESPNQGKIILDGQDITKLAPYDRPINMMFQSYALFPHMTVE
                     QNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR
                     PKILLLDEPLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSD
                     GQLQQVGTPSDVYDYPNSRFTAEFIGETNIFDGVVIEDHADYAVIECEGLENHVRIDH
                     GLGGPSEQDLWVSIRPEDIDLYKEKPEYLGDYNWAKGTVKEIAYLGSFAIYHIKLANG
                     RVVKSQVPAPYWYVRNITPPTWDETVYISWPENQPTPLFR"
BASE COUNT         1247 a         1157 c         1168 g         1114 t
ORIGIN      
        1 gtactggttt ttgttaatcc actatactgc ctgcgacgct taacggctgt ctttccactg
       61 ataatatttc gagccgagga aagaaccgag tttgcgcaaa aacggttgca ggataatatt
      121 cggctggcgc aaccgctcaa acggcttcag acggcattcg tcccctaaaa ttgcttcggc
      181 aaccgccaga cctgcaatgc ctgttatcgc catcccgtgt ccggaataac cttgtgcata
      241 aaaaacattt gcggccaaac gtccgaaatg cgggacaagg ttggcggtaa tgtcgcactc
      301 cccgccccac gaatattcga ttttgacatc gtcaagctgc ggaaaaactt taagcatatc
      361 ttggcggaca agctcggtca tacgcgcagg attgtcgata aactcgttat ccttaccgcc
      421 gaaaagcagt ctgccgtccg cgctgaggcg gtaataatcc aaaatatggc ggttgtcgca
      481 tactgccata ttgttacgga taagcccttt tgcgcgcgcc cccaagggtt cggtcgcaat
      541 aataaaggtg ctaacggcaa tcgccttgcg ttccaaaggc tggaatatcg ggttcaaacc
      601 tgcataggta ttgacggcat acaccagatt tttgcattcg acgctgcctt cgggggtgta
      661 aaccagccaa ccgttttgat aaggttcaat gcgtatcatg ggagaatgct caaaaatctt
      721 cgtaccagct tcggcagcgg cgcgggcgat gcccaacgtg taattgagcg gatggagatg
      781 cccggacaag ggatcgaact gtgcgccttg gtacatatcg ctgtcaagct gctgcttcag
      841 ttcagtgtta tcccagagtt gataatgagt tgcaccgtaa tatttttggg cgtgctcatg
      901 ccattgttgc aattcttccc aatgctgcga acggatggca accgtggcat aaccgcgctg
      961 ccaatcgcaa tcaatggcat gtttgcggac gcgttcgtcc accagttcga ccgcctgcaa
     1021 agactgttgc caaaaccatt gcgcttgctc caaaccgacc tgtttttcaa tttcctccat
     1081 accgcaggcg taatcgctga taacctgccc gccactccgt cccgacgcgc cgaaaccgat
     1141 acgcgcggct tccaacacaa ccgtttcatg tccctgctcc gccaagggca atgcagtgca
     1201 caaaccactc aatccgccgc cgatgataca ggtatcggtt ttcagacggc attgaagttt
     1261 cggataaaca gtatgaggat taaccgaact gaaataataa gaaggcagat attcttgaaa
     1321 atcagggcga atcattgtgt ttgctttatc gggtatattt tcggacggaa tgatacaggc
     1381 tgtcgagcca tatcgtccaa acagaaaatc ggttgaagaa aacaggctga cccagtcatg
     1441 cggtcagcct gccttattaa ttaatttgct ttctcggcag ccaatttttc ttggcggtag
     1501 gcttctgccg cttctcggtc acgcttggtt gcctgcctca tcatccaata attgacgatg
     1561 atgaccaatg ttccgatgat gccgatcagg atggttgcca aaacgttcat ctgcggatca
     1621 agacccagct tgattttgga gaaaatcacc tgcggcaatg tggatgaacc ggggccggag
     1681 aggaatgagg taatcaccaa atcatccaaa gacagggtaa tgccgagcag aaagcctgaa
     1741 gcgatggcag gggcaatcaa aggcaaagtg atgacaaaaa agattttcag cggacgcgcg
     1801 cccaaatcca ttgcggcttc ttcgagcgat tggtcaagct caaccagacg cgaacggata
     1861 acaacggtaa tgtatgccat gcacagcgtc gtatgtccta agaaaatagt gaaaaagcca
     1921 cgatcgaagt agagatgttg taaccattcg ctgccctgca aaaatatctg tacctgaata
     1981 atcagcagca gcatagacag accggtaatc acgtcgggca tcaccatagg tgcggaaatc
     2041 ataccggcga acaaggtact gccgcgaaaa cgtttaatcc gcgccatcgc atagcctgcc
     2101 agcgtgccca aaacgacggc ggcaagcgaa gacacaacgg caatccgcag cgacagccaa
     2161 gcggcttcca agatggtgtc gttttccagc aatgcgccgt accacttggt cgaaaagccg
     2221 ccccaaacgg ttaccagctt ggattcgtta aacgaataga tgaccaaaac aaccagcggg
     2281 atatacagaa acgccagcga cagtgccaac atcagtttca agaaccaaga taatttggat
     2341 ttctgcatta tttggctcct tcttccaatt cgcggttttc ataatgctga aacagggcaa
     2401 tcggcacgac cagcagcgcg accatcacga cggcgacggc ggaagccagc ggccagttgt
     2461 tttgatcgaa gaacgcctgc cacaagactt taccaatcat caggttttcc gaaccgccga
     2521 ccagctcggg aatgacgaac tcgccgacag cagggacgaa aaccagcatg gagcctgcaa
     2581 taatgccggt tttcgacaaa ggcagggtaa tcgtcaagaa cgatttgacc ggccccgcgc
     2641 ccaaatcgga agccgcttca agcaggcggt tgtcgagttt caccagttgc gtgtatagcg
     2701 gcagaatcat aaacggcaga taggcgtaaa ccatcaccaa attgagcgaa aaggcattgt
     2761 agaacaaatc caaaggctcg ctgataatac ccattttaat caacaggttg tttacaatac
     2821 cgttatgccc gagcagaccc atccacgcat agacgcgcaa caggaacgat gtccaaaagg
     2881 gcagcataat ggcaagcagc aaaccattgc ggacagaagg attggcacga gaaatcgcat
     2941 aggcggtcgg ataaccgacc aacaggcaaa tcactgtcgt catcaatgcg gttttgattg
     3001 aagaccagta ggtcatcaga tagatattgc tgttttcact gtcgccgaac gggttaaggg
     3061 tatgccaaaa attttggaaa atatcggcat agttttgata actgatggtg atattcagac
     3121 gacctaaatc ttcgtcgatg ctggtcagcg gcgtaaacgg cggaatggcg atttcttgtt
     3181 cggcaaagct gattttcagc acgatggcga acggaatcag aaacagcacc aaaagccaaa
     3241 tatacggtac ggcaatcacc acacgctgcc ccgggcggcg gaacagtttg tttttcagtt
     3301 tattaaggtt cattgcattc cccttaaatc aacggaacag tggcgtaggc tggttttccg
     3361 gccagctgat atacacggtt tcgtcccaag ttggcggtgt aatgttgcgt acataccagt
     3421 aaggtgcagg aacttggctt ttgacgacgc gcccgttggc gagtttgata tggtatatgg
     3481 caaagctgcc caaataggcg atttctttta ccgtgccttt cgcccagttg tagtcgccca
     3541 aatattcggg tttttcttta tataaatcaa tatcctctgg tcgaatacta acccaaaggt
     3601 cctgctcgct cggaccaccc aaaccgtgat cgatgcggac gtggttttcc aaaccttcgc
     3661 attcgataac ggcatagtcg gcatgatctt caatcaccac accgtcaaag atgttggttt
     3721 cgccgataaa ctcggcagtg aagcggctgt tgggatagtc gtacacgtcg ctgggtgtgc
     3781 cgacttgctg caactgaccg tcagacataa tggcgatgcg ggtcgccatc gtcatcgcct
     3841 cttcttggtc gtgcgtaacc ataatacagg ttacgccgac ttgttccagc gtattgacca
     3901 actcaagctg ggtttgttgg cgcagttttt tgtccaatgc accgaggggc tcatccagca
     3961 gtagaatttt cggacgtttt gccagactgc gtgccaaagc aatgcgctgc tgctgaccac
     4021 cagaaagctg gtgaggtttg cgtttggcaa atttggtcat ctgaaccagg cggagcattt
     4081 cttcgacgcg cgcggcgatt tcgcctttag gcattttgtc ctgtttcaga ccaaaggcaa
     4141 tgttttgttc tacggtcata tgcggaaaaa gcgcgtaact ttggaacatc atattgatgg
     4201 ggcggtcata gggtgcaagt ttggtaatat cctgaccatc aaggataatt ttcccctgat
     4261 tggggctttc catacccgcc agcatacgca gcagcgtgga ttttccgctg ccggaactgc
     4321 ccaaaagggc gaagatttcg tgttgataaa tgtccaagtc gatgttatcg acagcgtaat
     4381 tgtcaccaaa ctttttcacc aagccttgga tttgcagata aggtttggct gaagacgcag
     4441 tggttgcggt cataatggca atactccaat aaaaaaacga gtaccggcaa aacggatttt
     4501 cgaatgggtg ataaaaagct gtttgattgc tggcgggagt cgcaacgtct gatgccgtct
     4561 gaaactcttg tgaagcgcac gggcagcatg aaatggaaca agattccaaa gaactttata
     4621 ttatattagt ttatgcggtt ttcgggcaat atagtggatt aaatttaaac cagtacagcg
     4681 ttgcct
//
LOCUS       DAXIFS010000146         4684 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.146, whole genome shotgun sequence.
ACCESSION   DAXIFS010000146 DAXIFS010000000
VERSION     DAXIFS010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4684
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.146"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..321)
                     /locus_tag="ACFOCA_001601"
                     /pseudo
     CDS             complement(1..321)
                     /locus_tag="ACFOCA_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(627..1886)
                     /gene="rho"
                     /locus_tag="ACFOCA_001602"
     CDS             complement(627..1886)
                     /gene="rho"
                     /locus_tag="ACFOCA_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFC6988295.1"
                     /translation="MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMK
                     KGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVR
                     VPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGR
                     AIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTE
                     MSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNT
                     VVPTSGKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEE
                     FKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDE
                     IEAAEFLIGKIKASKNNDDFFELMRGK"
     gene            complement(2106..4490)
                     /gene="ppsA"
                     /locus_tag="ACFOCA_001603"
     CDS             complement(2106..4490)
                     /gene="ppsA"
                     /locus_tag="ACFOCA_001603"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HFC6988296.1"
                     /translation="MADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGG
                     FATTADAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDA
                     EIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLENVKEAMRH
                     VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVF
                     VTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKS
                     VTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQAR
                     PETVKSQEEGSRNLRRFSINGEKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDV
                     LVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQE
                     VTVSCAEGDTGFIYSGLLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGI
                     GLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVAT
                     LAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFA
                     LECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCEL
                     PSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAIS
                     ACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANELNK"
BASE COUNT          975 a         1115 c         1356 g         1238 t
ORIGIN      
        1 ctttaaatac agctcaaaat gcgctttggg aatgccgtca aacttgcgta aatgacgttt
       61 tgcccggttt caaaagttcc caattccatt gatatggttt tgtcgttcag caaaataact
      121 ttcatctgct tctactttgc cgtcaaacat ttccaaatgc ggactgtttt gataaataag
      181 taatcgtaaa cgatgaaaat aataggctgc ggtattttta ttaacgccta ctaactctgc
      241 tgctgttctt gcagttacac ctgcgacaaa cagttcaatg agtttatttt gtttataccg
      301 gcttagacga ctttttctca taggggcaac tctaacttaa tttgaatttc cctagttatc
      361 taggacagcc ccaaatttat acaaaaatga gcgcggttcg gcgcaacctt gaatcaagtt
      421 cccgcatcgg ttttcattgc cggtacggat gcgttcaagc cggttttgca aaggccgcgc
      481 tttcggcaag cggacacgga cactgccgac ggttgcgccg ttaacggggg gagggaggag
      541 ctgcgccgac cgtgtgaatg aaagtgccgt ctgaaacccg attttcaggc ttcagacggc
      601 atttcgcatt aatgcgggcg gcgcgtttat ttgccgcgca tcagttcaaa gaaatcatca
      661 ttgtttttag aggctttgat ttttccgatt aaaaattcgg ctgcctcgat ttcgtccatc
      721 gggtgcagga acttgcgtaa gagccacata cgttgcaact ggtcgttcgg cacaagcagc
      781 tcttcgcggc gcgtgccgga tttgttgatg ttgatggcgg ggaagaggcg tttttccgcc
      841 atacggcggt caaggtgcaa ttccatattg ccggtgcctt tgaattcttc gtaaatcaca
      901 tcgtccatac ggctgccggt ttcaaccaat gcggtggcga tgatggtcag cgaaccgcct
      961 tcttccacgt tgcgcgccgc gccgaagaaa cgtttggggc ggtgcagtgc gttggcatcg
     1021 acaccgccgg ttaggatttt gcccgaggta ggcacgacgg tattgtaggc gcgggcaagg
     1081 cgggtaatcg aatccagcag gatgaccacg tcttttttgt gttctaccat acgcttggct
     1141 ttttcaagca ccatttcggc aacttggacg tggcgttgcg ccggttcgtc aaaggtggag
     1201 gaaaccactt cgccgcggac ggaacggctc atttcggtta cttcttcggg acgctcgtca
     1261 atcaagagga cgatgagttc gacttcggga tagtttgagg taacggcgtg ggcaatgttt
     1321 tgcagcatca cggttttacc gcttttgggc ggggcaacca agagggcgcg ctgacctttg
     1381 ccgatagggg aaatcaggtc gatggcacgt ccggtcaggt tttcttcgga ctttaagtcg
     1441 cgttccagct tcaactgttc ggtcggaaac agcggggtca ggttttcaaa caggatttta
     1501 tggcggcata cttccgggtg gtcgccgttg atggtatcaa gcctgaccag ggcaaaatag
     1561 cgttcgttgt cttttgggac gcgcacgctt ccttcgatgg tgtcgcccgt atgcaggttg
     1621 aagcggcgga tttgggtggg cgagacatag atgtcgtcgg ggccggcaag ataggacgtg
     1681 tccgcgctgc ggaggaagcc gaagccgtcg ggcaggattt caagcgtgcc ggagcaggtg
     1741 aaaccctcgc cttttttcat catctggcgg acgatggcaa atacgagatc ttgtttgcgg
     1801 aatcggttgg cgttttcgat gccgtgttct tccgccaatt ctaagagttt ggaaatgtgc
     1861 agggtttgta attcggagac gtgcataata atgatgtatt ttgaagagga aaaagacagg
     1921 cagatgccgt ctgaaagaag aagctgaccg ttgccggttg ctcggggaag ggggaattgt
     1981 aggcagtcgg cgcgtgggtg tcaaatatta tcgcggacgg ggcatcggca ggaaatgccg
     2041 tctgagcgga gctgcttgga aaaaaatacc cccgcgcttt tcaggctcgg gggtatgggc
     2101 attgattatt tgttcaattc attcgccaaa tatagccaag tttcgatgac ggtatccggg
     2161 ttcagggaaa cgctttcaat gccttcctca accagccatt tggcgaagtc cggatggtcg
     2221 gacgggcctt gaccgcagat gccgacatat ttgttctgct tgcggcaggc ggagatggca
     2281 aggtgcagca tcactttgac ggcagggttg cgttcgtcaa acgattcgga taccaagccg
     2341 ctgtcgcggt cgagaccgag ggtcagttgg gtcatgtcgt tcgagccgat ggagaagccg
     2401 tcgaagtatt gcaggaattg ttccgccaat accgcgttgc tcggcagctc gcacatcata
     2461 atcaggcgca ggccgttttt gccgcgttcc aagccgtttt ctttcagggc tttgacaacg
     2521 gcttcggctt cgcccaaagt gcggacgaac ggaatcatga tttcaacgtt ggtcaacccc
     2581 atttcatcgc ggacgcgttt caaggctttg cattccaagg cgaaacagtc tttgaagttg
     2641 tcggcgacat aacgcgccgc accacggaag cccaacatcg ggttttcttc atgcggttcg
     2701 tatacgttgc cgccgaccag gttggcgtat tcgttggatt tgaagtcgga catacggacg
     2761 atggttttac gcggataaac cgatgcggcc aatgtcgcca cgccttcggc gattttatcg
     2821 acgtagaagt cgacagggga cgcgtaaccg gcgatacggc gggtaatttc cgcttttaat
     2881 tcgtcgtctt gtttgtcaaa ttccaacaag gctttggggt ggataccgat ttggcggttg
     2941 atgataaatt ccatacgcgc caagccgatg ccttcgctgg gcaggttggc gaagctgaat
     3001 gcgagttcgg gattgccgac gttcatcatg acttttacag gtgctttagg catgttgtcc
     3061 aaagcaacat cggtaatttg tacgtccagc aggccggagt agatgaagcc ggtatcgcct
     3121 tcggcacagg atacggtaac ttcttgaccg tttttcagca attcggttgc attgccgcag
     3181 ccgacaacgg caggaatacc cagttcgcgc gcgatgatgg cggcgtggca ggtacgtccg
     3241 cccctgttgg tcacgatggc ggaagcgcgt ttcatcaccg gttcccaatc tgggtcggtc
     3301 atgtcggtaa ccagtacgtc gccggcttcg acggaatcca tctcggaagc atctttaatc
     3361 aggcgtacct tgccctgacc gactttctga ccgatggcgc ggccttcgca caagacggtt
     3421 ttttcgccgt tgatagaaaa gcggcgcagg ttgcggctgc cttcttcctg ggatttgacg
     3481 gtttcgggac gggcttgcag gatgtagagt ttgccgtcca agccgtcgcg tccccattcg
     3541 atgtccatcg ggcggccgta gtgtttttcg atggtcagtg cgtaatgcgc caactcggtg
     3601 atttcttcgt cggtaatgga gaagcggttg cggtcttctt cggggacatc gacgttggtt
     3661 accgatttgc cggcttctgc tttgtcggta aaaatcattt tgatgtgttt tgagcccatg
     3721 gttttgcgca ggatggcagg tttgcctgct ttcagcgtgg gtttgaacac atagaattcg
     3781 tcgggattga ctgcgccttg tacgacgttt tcgcccagac cgtaggatga agtgacaaag
     3841 acgacttggt cgtaaccgga ttcggtatcg agggtgaaca tcacgccgga cgcgccgctg
     3901 tcggaacgca ccatacgctg cacgccggcg gaaagggcga cgatgtcgtg ttcgaagcct
     3961 ttgtggacgc ggtaagaaat ggcgcggtcg ttgtacaggg aggcgaatac atggcgcatc
     4021 gcttctttaa cgttttccaa gccgttgata ttcaggaagg tttcctgttg gccggcaaat
     4081 gatgcgtcgg gcaggtcttc ggcggttgcg gaagagcgta cggcaacgga aatgtccgcg
     4141 ccgccggcat cggcaaccat tttgttccat gccgcttcga tttcggcatc gagctgttcg
     4201 gggaagggcg tgtccaaaat ccattggcgg atttctttgc cgacgcgtgc cagttcggca
     4261 acgtcttcga catctaattt tgccagtgcg gcggaaatgc gttcgctcag accgttgtgt
     4321 gcgaggaatg cgcggtaggc atcggctgtg gtggcaaagc cgccggggac gcgaacgcct
     4381 ttttcggtca gctgactgat catttcgccc agcgaggcgt ttttaccgcc cacgcgttca
     4441 acatctgtca tacgcaggtt ttcaaaccaa attacgtagt tgtcggccat ttgtgtgtcc
     4501 aatccaaaat atgttaaaaa agaaacaaat ccgcgtgctt attttaagcg attcgttcct
     4561 ctgctgtcat gtgttttatc cgttttaaaa tcatgatgcc gtctgaaaaa ttgcggtttc
     4621 ggcgtgtgta gcggtttgaa acttgcagcc ggtatacttc tttttttggg tattttcttt
     4681 gtaa
//
LOCUS       DAXIFS010000147         4674 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.147, whole genome shotgun sequence.
ACCESSION   DAXIFS010000147 DAXIFS010000000
VERSION     DAXIFS010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4674
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.147"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            134..1075
                     /gene="miaA"
                     /locus_tag="ACFOCA_001604"
     CDS             134..1075
                     /gene="miaA"
                     /locus_tag="ACFOCA_001604"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFC6988297.1"
                     /translation="MPTPKAFALLGPTACGKTALALKIAETLPVEIISLDSALVYRDM
                     DIGTAKPSHAERSFVPHHLIDIITPVQTYSAARFVEDCTRLIGEITARGKYPLIVGGT
                     MMYFRALTQGLNDLPEADACLRADLDEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQ
                     RIGRALEVYYLTGKPMSTHLGSPTSHTLPFDLHTAALIPENRARLHENIALRFHLMLE
                     QGFIGEVENLRRLYPSLTADSPAIRCVGYRQAWEYLDGKTDFPAFVEKGIAATRQLAK
                     RQLTWLRKTPLDCVTDPFSDGNSCTRLIEAAKRFFGA"
     gene            1079..1798
                     /gene="tadA"
                     /locus_tag="ACFOCA_001605"
     CDS             1079..1798
                     /gene="tadA"
                     /locus_tag="ACFOCA_001605"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HFC6988298.1"
                     /translation="MLTTPPLAPKTVAALHRLGIRTLEELRQNGAVQTFLLLKASGLT
                     LTKSTLWQLQSLLDGTPPQEMAQHDKTRLLAELKNHPPVAAFPPQGEMAHFMGLALEQ
                     AKLSALMGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQAGSEMQNYRLD
                     GCDIYITLEPCAMCASALIQARIRRVIYGAAEPKTGAAGSIVNLFADKRLNTHTAIRG
                     GILQEECRAVLSRFFQNKRKG"
     gene            1803..2291
                     /locus_tag="ACFOCA_001606"
     CDS             1803..2291
                     /locus_tag="ACFOCA_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HFC6988299.1"
                     /translation="MTALLVILALALIAAGTAGIVYPALPGLALMFAGTWLLAYSGGY
                     QIYGAGVLWTVGLISLAGILADYVAGIWGTKYTGAGKLAVRGALVGSIIGMFFSLPGL
                     ILGPFIGAAAGELIDRRNMLQAGKAGLGTLLGLVVGTAFKIGCAVSILFILLVKYIAY
                     LF"
     gene            2357..3109
                     /gene="rlmB"
                     /locus_tag="ACFOCA_001607"
     CDS             2357..3109
                     /gene="rlmB"
                     /locus_tag="ACFOCA_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFC6988300.1"
                     /translation="MANQRPIYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEK
                     AANENIRVYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILD
                     GITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLAR
                     TLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP
                     MFGTVESMNVSVSAGMVLSETRRQRVLKNEKA"
     gene            complement(3171..4562)
                     /locus_tag="ACFOCA_001608"
     CDS             complement(3171..4562)
                     /locus_tag="ACFOCA_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HFC6988301.1"
                     /translation="MSGQLGKGADAPDLVYGLEDRPPFGNALLSAVTHLLAIFVPMIT
                     PALIVGGALELPVEMTAYLVSMAMVASGVGTYLQVNRFGPVGSGMLSIQSVNFSFVTV
                     MIALGAGMKEGGLTKDAMISTLLGVSFVGAFLVCFSAWLLPYLKKVITPTVSGVVVML
                     IGLSLVHVGITDFGGGFGAKADGTFGSMENLGLASLVLLIVLIFNCMKNPLLRMSGIA
                     VGLIAGYIVALFLGKVDFSALQNLPLVTLPVPFKYGFAFDWHAFIVAGAIFLLSVFEA
                     VGDLTATAMVSDQPIEGEEYTKRLRGGVLADGLVSVIATALGSLPLTTFAQNNGVIQM
                     TGVASRHVGKYIAVILVLLGLFPVVGRAFTTIPSPVLGGAMVLMFGLIAIAGVRILVS
                     HGIRRREAVIAATSVGLGLGVAFEPEVFKNLPVLFQNSISAGGITAVLLNLVLPEDKT
                     EAAVKFDTDHLEH"
BASE COUNT         1168 a         1493 c         1129 g          884 t
ORIGIN      
        1 tggtttttgt taatccacta tataaaggca tacggtaaac acgccccctt gccgtcggcg
       61 tgcttccgca aaccaaaata taacgtcggc acgctttccg ctataatccg tatttttcca
      121 aacctgaaac gttatgccga ccccgaaagc ctttgccctg ctcgggccga ccgcctgcgg
      181 caaaaccgcg ctcgccctca aaattgccga aaccttgcct gtcgaaatca tcagcctcga
      241 ttccgcgctg gtttaccgcg atatggacat cggcacggcg aaaccgtctc atgccgagcg
      301 ttcctttgta ccgcaccacc ttatcgacat cattacgcct gttcagacat acagtgccgc
      361 ccgttttgtc gaagactgca cgcgtctgat tggcgaaatc acggcgcgtg ggaaatatcc
      421 gctgattgtc ggcggcacga tgatgtattt ccgcgccctg acccaaggtt tgaacgattt
      481 gcccgaagcc gacgcctgcc tgcgtgccga cttggacgaa caaaaacaaa tgtacggctt
      541 ggatttcctc taccgcaccc tgcaaaaagt cgaccctgaa acagcatgcc gtctgaaacc
      601 gaacgacagc cagcgtatcg gacgcgcttt ggaagtttat tatttaaccg gcaaaccgat
      661 gagtacgcat ctcggcagcc caacctccca tacgctcccc ttcgatttgc ataccgccgc
      721 cctgattccc gaaaaccgcg cccgcctgca tgaaaacatc gccctgcgtt tccacctgat
      781 gcttgaacag ggctttatcg gcgaagtaga aaacctgcgc cgcctctatc ccagcctgac
      841 cgccgactcc cctgccatac gctgcgtcgg ctaccgtcag gcatgggaat atctggacgg
      901 aaaaaccgat ttcccggcat ttgtcgagaa aggcattgcc gccacgcgcc aacttgccaa
      961 acgccaactg acttggttgc gcaaaacacc tttagactgc gttaccgacc cgttttcaga
     1021 cggcaattca tgcacacgcc tgattgaggc ggcaaaacgg tttttcggcg cataaactat
     1081 gctgaccacg ccgccgctcg cccccaaaac cgtcgccgcc ctacacaggc tcggtatccg
     1141 tacgctcgaa gaactgcggc aaaacggcgc ggttcaaacc ttcttgttat tgaaggcatc
     1201 aggtttgacc ctcacgaaaa gcacgctgtg gcagcttcag tcgctgctgg acggcacgcc
     1261 gccgcaagaa atggcgcaac acgataaaac ccgcctgctt gccgagttga aaaaccatcc
     1321 gcccgtcgcc gcctttcccc cgcaaggcga aatggcgcat ttcatgggtt tggcattgga
     1381 acaggcgaaa ctgtccgcat taatgggcga aatacccgtc ggggcagtca tcgtttcaga
     1441 cggcaaaatc atcgcatcgg cacacaacac ctgcattgcc gactgcaatg tcagccggca
     1501 cgccgaaatc aacgccttgg cacaggcagg cagcgaaatg caaaactacc gccttgacgg
     1561 atgcgacatc tacatcaccc tcgaaccctg cgccatgtgc gcgtccgcac tgatacaggc
     1621 acgaatcagg cgcgtgatct acggtgcggc agaacccaaa accggcgcgg caggaagcat
     1681 cgtcaacctg tttgccgaca aacgcctcaa tacgcacacc gccatacggg gcggaatcct
     1741 gcaagaagaa tgccgcgccg tattaagccg ttttttccaa aacaaaagaa aaggttgaac
     1801 ctatgaccgc cttgctcgtc atcctcgccc tcgccctgat agccgccggt acggcgggca
     1861 tcgtttaccc cgccctgccc ggattggcat tgatgtttgc cggaacctgg ctgctcgcct
     1921 actccggcgg ctaccaaatc tacggcgcgg gcgttttgtg gacggtcgga ctcatcagcc
     1981 ttgccggcat actggcggac tatgtggcag gcatatgggg gacaaaatat accggagcgg
     2041 gcaagctcgc cgttcgcggc gcattggtcg gcagtatcat cggtatgttt ttctcccttc
     2101 ccggactaat actcggtccc tttatcggcg cggcggcagg cgaactgatc gatcggcgca
     2161 atatgcttca ggcaggtaaa gcgggcttgg gtacgctgtt ggggcttgtc gtcggcacgg
     2221 cgttcaaaat cggctgcgcc gtatccatct tgtttatcct gttggtgaaa tacatcgcct
     2281 acctgtttta accccttcag acggcatacc ggcaaattgc tacaatgccg tctgaaccct
     2341 tttcacaaag caccatatgg caaaccaaag acctatctac ggcttccatg ccgtcaacgc
     2401 ccgattgtgg caaaacccca aatccatcgt cgaactctat gtccaagaag gcaaaaacga
     2461 tgtacgcacg cgcgaagtgt tggaaaaggc ggcaaacgaa aacatccgcg tatattttgc
     2521 cgatgccgac cgcctcaacg ccatcagcaa aggtgcgcgc catcagggcg tggtcggatt
     2581 tatcgatgcc tccaaaaacc acgtccacct cgaagacgta ttggaaaact taagcgaacc
     2641 gccgctgctg ctgatactcg acggcatcac cgatccgcac aacctcggcg cgtgcctgcg
     2701 taccgccgac gcaatgggcg tacatgccgt catcgcaccg aaagacaaaa gcgcggggct
     2761 gaacgccacc gtcagcaaag tcgccagcgg cgcggcggaa accgtcccct acatcaccgt
     2821 aaccaacctc gcccgcaccc tgcgcgagct gaaagaatac ggcatttgga tcatcggcac
     2881 cgatatgggc ggcaacgccg acctttacca ttgcgatctg cccgacagcg cggcatgggt
     2941 gatgggcaac gaaggcgacg gtatgcgccg cctgacacgc gaacattgcg acatgctggt
     3001 gtccataccc atgttcggca cggtcgaaag catgaacgtc tccgtgtctg ccggaatggt
     3061 attaagcgaa acccgccggc agcgcgtatt aaaaaacgaa aaagcgtaag cctcaaaaac
     3121 aatgccgtct gaaacaggga ttctgtttca gacggcattc gttttcaaaa tcagtgttcc
     3181 aagtggtcgg tatcaaactt gaccgccgcc tcggttttat cttcgggcaa gaccaaattc
     3241 agcaagactg ccgtaatgcc gccggcggaa atagagtttt ggaacaagac aggcaggttt
     3301 ttaaacactt ccggctcaaa cgcgacaccc aagcccaaac cgaccgacgt tgccgcaatt
     3361 accgcttcgc gcctgcggat gccgtggctg accaaaatcc gcacgcccgc aatcgcaatc
     3421 aagccgaaca tcaaaaccat cgcgccgccc aacaccggac tcggaatcgt cgtaaacgcg
     3481 cgtccgacaa cggggaacag acccaacagc accaaaatca cggcaatata tttgcccaca
     3541 tggcgcgaag ccacgccggt catctgaatc acgccgttgt tttgcgcaaa cgtcgtcagc
     3601 ggcagcgaac ccaaagccgt cgcaatcacc gacaccaagc cgtcagccaa cacgccgccg
     3661 cgcaggcgtt tggtgtattc ctcgccttca atcggctgat cggacaccat tgccgtcgcc
     3721 gtcaaatcgc cgaccgcctc aaacacgctc aacaggaaaa tcgcgcccgc cacaataaat
     3781 gcgtgccagt cgaaagcaaa accgtattta aacggtacgg gcagcgtaac cagcggcagg
     3841 ttttgcagcg cggaaaaatc caccttgccc aaaaacagcg cgacaatgta accggcaatc
     3901 agaccgaccg cgatgccgct catccgcaac agcgggtttt tcatgcagtt gaatatcaac
     3961 acaatcagca acaccagcga agccagcccc aagttttcca tcgagccgaa cgtgccgtcc
     4021 gccttcgcgc cgaagccgcc gccgaaatcg gtaataccga cgtgtaccaa actcaagcca
     4081 atgagcatca cgaccacgcc gctgaccgtc ggcgtaatca cttttttcaa atacggcaaa
     4141 agccacgccg agaaacacac caaaaacgcg ccgacaaacg atacacccaa gagcgtcgaa
     4201 atcatcgcat ccttagtcaa accgccctcc ttcatccctg cgcccagcgc aatcatcacg
     4261 gtaacgaacg aaaaattcac cgactggatg gacagcatcc ccgaaccgac cggcccgaag
     4321 cggttgacct gcaaataagt gccgacaccc gacgcaacca tcgccatcga cacgagatac
     4381 gccgtcatct ccaccggcaa ttccagcgcg ccgcccacaa tcagcgcggg cgtaatcatc
     4441 ggcacaaaaa tcgccaaaag atgggtaacc gcgctcaaga gcgcattacc gaacggcggc
     4501 ctgtcttcca aaccgtacac caaatcaggc gcatccgcac ctttgcccaa ctgaccgctc
     4561 attgtatttc cttattttaa aggttgaaaa atccaagcgc ggattgtagc gaatctgccg
     4621 cacggcttca atttgcattt cagacggcat ccgtctggtc cacacgttta ccac
//
LOCUS       DAXIFS010000148         4619 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.148, whole genome shotgun sequence.
ACCESSION   DAXIFS010000148 DAXIFS010000000
VERSION     DAXIFS010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4619
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.148"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            61..2118
                     /gene="metG"
                     /locus_tag="ACFOCA_001609"
     CDS             61..2118
                     /gene="metG"
                     /locus_tag="ACFOCA_001609"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFC6988302.1"
                     /translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHECY
                     YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTDFGIGYDNYYSTHSPENKQ
                     FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
                     TTYSPTELINPYSAVSGAKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQPE
                     ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
                     CDRIGIDFDEYFKAGSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
                     VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
                     LVGKYVNIAARASGFIAKRFEGKLKDVSDSALLAKLTAQSEAIAECYENREYARALRD
                     IMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPQTATN
                     AARFLNLDAITWTNTRVTLGKHAINKYKHLMQRVEQKQVDDLIEANKQSIAAAAAPAA
                     EESKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIA
                     ASYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATAEGKLKLLDVDAGAQPGD
                     KVG"
     gene            complement(2192..3145)
                     /locus_tag="ACFOCA_001610"
     CDS             complement(2192..3145)
                     /locus_tag="ACFOCA_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6988303.1"
                     /translation="MNQKKVVVLDADTLPGRTFHFDFPHELAVYGTTDAAETAGRVRD
                     AHIIITNKVMISADIIAHAPQLELIAVSATGVNNVDIGAAKAAGVAVCNVRAYGNESV
                     AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIQDLNGKTLAVFGRGNIGR
                     TLAGYAQAFGMGVVFAEHKHAPAVREGYVAFENAVRTADVLSLHCPLNAQTENMIGEN
                     ELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTNEPPKNGNPLLKARL
                     PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
     gene            3267..3464
                     /locus_tag="ACFOCA_001611"
     CDS             3267..3464
                     /locus_tag="ACFOCA_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
                     /protein_id="HFC6988304.1"
                     /translation="MLKTLTFAALHFSTAFSITYVLTGSIGVSGAVALVEPLINTVVF
                     YSGLTKTSTALPRLSSTRTIL"
     gene            complement(3492..3557)
                     /locus_tag="ACFOCA_001612"
                     /pseudo
     CDS             complement(3492..3557)
                     /locus_tag="ACFOCA_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            3553..3639
                     /locus_tag="ACFOCA_001613"
                     /pseudo
     CDS             3553..3639
                     /locus_tag="ACFOCA_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
     gene            3717..4046
                     /locus_tag="ACFOCA_001614"
     CDS             3717..4046
                     /locus_tag="ACFOCA_001614"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6988305.1"
                     /translation="MGSLIIEDLQESFGKEAVKGKEITVHYTGWLEDGTKFDSSLDRR
                     QPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEV
                     ELLKVYE"
     gene            4075..4281
                     /locus_tag="ACFOCA_001615"
                     /pseudo
     CDS             4075..4281
                     /locus_tag="ACFOCA_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249814.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            4496..4619
                     /locus_tag="ACFOCA_001616"
                     /pseudo
     CDS             4496..4619
                     /locus_tag="ACFOCA_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349130.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
BASE COUNT         1250 a         1369 c         1056 g          944 t
ORIGIN      
        1 gcttcagacg gcatttacgg tataattccc ctttaccatc tatccccaaa agcataaacc
       61 atgacacgca aaatcctcgt tacctccgcc ctgccctatg ccaacggcag catccacctc
      121 ggccatatgg tcgaacacat ccaaaccgac gtttgggtgc gctttcaaaa actgcgcggc
      181 cacgaatgct actactgctg cgccgacgac actcacggca cgcccgtaat gcttgccgcg
      241 caaaaacaag gcatcgcgcc cgaagacatg attgccaaag tgcgcgaaga gcacctcgcc
      301 gactttaccg atttcggcat cggttacgac aattattaca gcacccattc ccctgaaaac
      361 aaacagtttt cccaagacat ttaccgcgcg ctgaaagcca acggcaagat tgagagccgc
      421 gtcatcgagc agcttttcga ccccgaaaaa caaatgttcc tgcccgaccg cttcgttaaa
      481 ggcgaatgcc cgaaatgcca cgcccaagac caatacggcg acaactgcga agtctgcggc
      541 acgacctatt ccccgaccga actgattaac ccgtattccg ccgtttccgg cgcgaaaccc
      601 gaattgcgcg aatccgaaca cttcttcttc aaactgggcg aatgcgccga cttcctcaaa
      661 gcatggactt ccggcaacaa cccgcacgac ggcaaacccc atctgcaacc agaagccctc
      721 aacaaaatga aagaatggct gggcgaaggc gaagaaacca ccctgtccga ctgggacatt
      781 tcccgcgacg cgccgtattt cggttttgaa atccccgacg cgccgggcaa atacttctac
      841 gtctggctgg acgcgcccgt cggctacatg gcatcgttta aaaacctgtg cgaccgcatc
      901 ggcatcgatt tcgacgaata cttcaaagcc ggcagccaaa ccgagatgta ccacttcatc
      961 ggcaaagaca tcctctattt ccacgccctg ttctggcccg ccatgctgca tttctccggc
     1021 caccgcgccc cgaccggcgt gtacgcacac ggctttttga ccgtggacgg acaaaaaatg
     1081 tccaaatcgc gcggcacgtt tattaccgcc aaatcctatc tggaacaagg cctaaacccc
     1141 gagtggatgc gctactacat cgccgccaaa ctcaacagca aaatcgaaga catcgatttg
     1201 aacctgcaag actttatctc gcgcgtcaac agcgacctcg tcggcaaata cgtcaacatc
     1261 gccgcccgcg cgtcaggttt catcgccaaa cgctttgaag gaaaactcaa agacgtttcc
     1321 gacagcgcat tgctggcaaa actgactgcg caaagcgaag ccattgccga atgctacgaa
     1381 aaccgcgaat acgcccgcgc cctgcgcgac atcatggcat tggcagacat tgttaatgaa
     1441 tacgttgatg ccaacaaacc ttgggaactc gccaaacaag aaggccaaga cgaacgcctg
     1501 cacgaagtat gcagcgaact catcaacgcc tttacgatgc tgaccgccta cctcgccccc
     1561 gtattgccgc aaaccgccac caatgccgcg cgtttcctca atctggacgc gattacttgg
     1621 acgaacacaa gggtaacctt gggcaaacac gccatcaaca aatacaaaca tttaatgcaa
     1681 cgagtggagc aaaaacaagt ggacgattta atcgaagcca acaaacaaag catcgccgcc
     1741 gcagccgcac ctgccgccga agagagcaaa tacgaaaaag tcgccgaaca ggccagcttc
     1801 gacgacttta tgaaaattga tatgcgcgtc gccaaagtct tgaactgcga agccgtcgag
     1861 ggcagcacca aacttttgaa attcgacctc gatttcggtt ttgaaaaacg catcatcttc
     1921 tccggtatcg ccgcgtctta tcccaaccct gccgagttaa acggaagaat ggtcatcgcc
     1981 gtcgccaact tcgccccgcg caaaatggca aaattcggcg tatccgaagg tatgattttg
     2041 agtgccgcca cggcagaggg caaactgaag ctcttggatg tggatgcagg cgcacaaccg
     2101 ggcgacaaag tcggttaagc agaaatgtca aaacaatgcc gtctgaaccc ttgaggcgtt
     2161 cagacggcat tttttcgtca tcccgacaag ctcaaaccac ccggttttgc gcctcgcctt
     2221 tcacaaaggc gtgaatgttc gccaacaata tatcaaacag cctgtccaaa gcctcgcggc
     2281 ttgcccacgc ggtatgcggc gtaacaatca gattgggaag tcgtgccttc aacagaggat
     2341 tgccgttttt aggcggctca ttcgtcaaaa catccacgcc cgccccgccg atctgcccgt
     2401 atttgagtgc ggcaagcagc gcgttttcat ccaccagccc gccgcgcccg caattaatca
     2461 aaaccgcacc gggcttcatc tgccgcaact cattttcgcc tatcatattt tcagtttgtg
     2521 cgttcagcgg acagtgcagc gacaacacat cggcagtccg taccgcattt tcaaaggcaa
     2581 catagccttc gcgcacagcg ggcgcgtgtt tgtgttcggc aaacaccacc cccatcccga
     2641 acgcctgcgc gtatcctgcc agcgtccgtc cgatattgcc gcgtccgaaa accgccagcg
     2701 ttttgccgtt caaatcctga atcggcgcgc cgtaatggca gaaaaacggc gatttttccc
     2761 ataatcctgc cgcaacatca cgctgatagg caggcaaatt ccgcatcagg gcaatcatca
     2821 gcataaaggc atgttccgca accgattcgt ttccgtaggc gcggacattg cataccgcaa
     2881 cgcccgccgc cttcgccgcc ccaatatcga cattgttcac accggtcgca ctgacggcaa
     2941 tcaattcaag ttgcggagcg tgtgcaatga tatccgctga aatcatcact ttattggtga
     3001 tgataatatg cgcgtcgcgc acccgtcctg ccgtttccgc agcatctgtc gtaccgtaaa
     3061 ccgcaagctc gtgtgggaaa tcgaagtgaa aagtccgacc gggtaaagta tccgcatcca
     3121 atacgactac tttcttctga ttcataattt ttatccctat ttagaaaatg atttatttac
     3181 actaacagca aatagcaaat ttaaaccgca cagccttatg ataatcttta tcatccctcc
     3241 gtcaatgtcc aatccgagag atgatgatgc ttaaaaccct gacttttgcc gcactgcatt
     3301 tcagcaccgc cttcagtata acctatgtac tgacgggcag tataggcgta tcgggggcgg
     3361 tcgcgctggt cgagcctcta atcaacaccg tcgttttcta tagtggatta acaaaaacca
     3421 gtacggcgtt gcctcgcctt agctcaacga gaacgattct ctaaggtgct gaagcaccaa
     3481 gtgaatcggt tccgtactat ttgtactgtc tgcggcttcg tcgccttgtc ctgattaaaa
     3541 tttaatccac tatatttcca tgaaaaagca tggaaccttt acgaaaaaaa taaaacagtc
     3601 aaacaaacac agccgtttca gctgcaccgg agcagctgac gtttgagcgg catttgactt
     3661 cgccggacgg tatgttaccc ttgccgtttt aaccaacaag caacgaaagg acaaatatgg
     3721 gcagcctgat tattgaagat ttgcaggaaa gcttcggaaa agaagcagtt aaaggcaaag
     3781 agattaccgt gcattacaca ggttggctgg aagacggcac caaattcgac tccagcctcg
     3841 accgccgcca gccgctgacc atcacgctcg gcgtcggaca agtcatcaaa ggctgggacg
     3901 aaggcttcgg cggaatgaag gagggcggca aacgcaagct gaccatccct tcggaaatgg
     3961 gctacggcgc acacggcgcc ggcggcgtga ttcccccgca cgccactttg atatttgaag
     4021 tcgagctgct gaaagtgtac gaataaagct gcctgggcaa taccgtctga cataatggct
     4081 tcaagcaacg taaacaaaga aatcaaagac aaaaaactct ccctgtgggc caagcgtcaa
     4141 gacggttcgg taaaatggtt ctgcggacag ccggttacgc gcaacgacac cgccaaagac
     4201 gacaccgtcg ccgccgacac cgacaccgcc aagaagatcg acaccaagca cctgccgtca
     4261 acctgccgcg atgattcatc taccggttgc atagaaacac cacgcgccga cttcaaacac
     4321 ttccaaaaaa tcagccgtta ccgagtattg cccgaatcac ggcacatggc cgaaaaactt
     4381 cgtcattccc gcgcaggcgg gaatctaggt ctgtcggcac ggaaacttat cgggtaaaac
     4441 ggtttcttga gattttgcgt tctagattcc cactttcgtg ggaatgacgg gatttaatga
     4501 tgccgccggc gtggcatccg cctccgacat caaaggcaaa tatgttgaga aagttgaagt
     4561 caaaaacggc gtcgttaccg ccgaaatgaa atcaagcggc gtaaacaaag aaatccaag
//
LOCUS       DAXIFS010000149         4605 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.149, whole genome shotgun sequence.
ACCESSION   DAXIFS010000149 DAXIFS010000000
VERSION     DAXIFS010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.149"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(236..682)
                     /gene="smpB"
                     /locus_tag="ACFOCA_001617"
     CDS             complement(236..682)
                     /gene="smpB"
                     /locus_tag="ACFOCA_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFC6988306.1"
                     /translation="MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESY
                     IYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVP
                     LDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR"
     gene            complement(737..1747)
                     /gene="waaF"
                     /locus_tag="ACFOCA_001618"
     CDS             complement(737..1747)
                     /gene="waaF"
                     /locus_tag="ACFOCA_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFC6988307.1"
                     /translation="MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSM
                     AVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALAT
                     GIAKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSID
                     ERRREISVETFGLNLGKPVLAFCPGAEFGPAKRWPTRHFAELGKHYLAAGWQVWLFGS
                     QKDDEIAEEINCLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKV
                     VAVYGSSSPTHTPPLSDRAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEE
                     AV"
     gene            complement(1878..1953)
                     /locus_tag="ACFOCA_001619"
     tRNA            complement(1878..1953)
                     /locus_tag="ACFOCA_001619"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1918..1920),aa:Asn,seq:gtt)
     gene            complement(2144..2896)
                     /locus_tag="ACFOCA_001620"
     CDS             complement(2144..2896)
                     /locus_tag="ACFOCA_001620"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFC6988308.1"
                     /translation="MITLPSLNNLPSKWDEIRHCLETRVFECGVMPHPNLTECEAGQF
                     DRDFWDNIGCAPEEYVRIRRAIRLLEVRYPDSLNELVCAAIATPLGEMLAVFGNKGLC
                     LLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQI
                     GTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPKAVRAVAAANGQNKVSILIPCHRVI
                     GSDGKLTGYAGGLNRKQFLLALERGEVQTALF"
     gene            3207..3554
                     /locus_tag="ACFOCA_001621"
                     /pseudo
     CDS             3207..3554
                     /locus_tag="ACFOCA_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255955.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
     gene            complement(3543..4169)
                     /locus_tag="ACFOCA_001622"
                     /pseudo
     CDS             complement(3543..4169)
                     /locus_tag="ACFOCA_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751227.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            4189..4299
                     /locus_tag="ACFOCA_001623"
                     /pseudo
     CDS             4189..4299
                     /locus_tag="ACFOCA_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
BASE COUNT         1132 a         1359 c         1075 g         1039 t
ORIGIN      
        1 ttgtcaagcc agtttgaaaa tgtgtataat tgccctcgtt atttacaaaa atttcaggaa
       61 aaatgaccgc actttaccct tggctaatgc caatttatca tcaaattgct caaacctttg
      121 acgaaggttt ggggcatcat gccgtactga ttaaagcgga tgctggttta ggtgtagaac
      181 gtttacacat caggcggcag ccttgcccat accgtctgaa gcactgtttc cacaatcagc
      241 gcgtatgctt aatcaaccgc tgtttctcgc gtttccaatc cgcctctttc atactctgac
      301 gtttgtcgtg ctgtttctta ccttttgcca aaccgatttc catcttgatt tttccgcgcg
      361 aaaaatgcaa atccagcggc acgatggtgt agccggcacg ttcggttttg ccgattaatt
      421 tgttgatttc cgactggttc aacaagagct tgcgcggacg tacggcatct ggtttaatgt
      481 gtgtcgaggc tgtgggcaaa gccgtaatat ggcagccgac cagataaaac gcgtcttttt
      541 tccaatagat ataactctct ttaagctgta cgcgcgcggc gcggattgct ttgacttccc
      601 agccttccaa gaccaaaccg gcttcaatcc ggtcttcaat gaaaaaatcg tgaaatgctt
      661 ttttattgtt cgcaatagcc ataaacatcc tatcaatatc cgccgtcaga cggcataaac
      721 ccgaaaacag aacccatcat accgcctctt caaccgcctg cacaatcttc tcgggataca
      781 gcctgttgag gcagtcggta tgccccagcg gacattcccg cttaaaacag ggcgaacatt
      841 ccaagtgcag gctgacgatt ttcgccctgt cgctcaaagg cggcgtatgc gtcgggctgg
      901 aagaaccgta aaccgccacc accttcctgc ccaatgccgc cgccaagtgc atcagcccgc
      961 tgtcgttgca cacaaccgtg tccgccaacg acagcaaatc cattgcctgc gacaaatcgg
     1021 ttttgccgca caaattgaca cacataccgt ctgaaaggca gttgatttcc tcggcaattt
     1081 catcatcttt ttgcgaaccg aacagccaaa cctgccaacc cgccgccaga taatgtttgc
     1141 ccaactcggc aaaatgcctt gtcggccaac gctttgccgg cccgaattcc gcgcccgggc
     1201 aaaatgccaa aacaggcttt ccaagattca aaccgaaagt ttcgacagaa atttcccgcc
     1261 gccgttcatc aatggaaaac tcggggaatc ccgaatgccc gtcaaaatct tcctgactcg
     1321 gatgcgcgag agccgtatat ctgtccacca tcaaaggcag acgttcctta tccagcctgc
     1381 gtatatcgtt caacagaaaa taacggcttt caccgacata acccgtcctt ttggcaatac
     1441 ccgttgctag cgcgatgact gccgatttca aagaaccggg caacacgata acctgatcgt
     1501 atccgcgccg ccccaaatcc ctgccgaccc gccagcggcg tttcaactcc aacgcaccgt
     1561 gtccgaacgg attctcaaga atttcattca cttccggcat acgctcgaac accgccatcg
     1621 accacttcgg cgcgaacaca tcaatcgtgc aaccggggtg aagttccttc aaacggcgga
     1681 acaagggctg ggtcatcacg cagtcgccta tccaactggg agaaataatc aggattttga
     1741 tggacataac aagaaaccga aatcagacag gcggaatttt accgcgaaac cgttggaaaa
     1801 cctatctcgc cgcattccga acgccggacg tgcaaatatg aaaaagcccg aacattcaag
     1861 ttcgggcttc aaaattctgg ctccccgacc tgggctcgaa ccagggacct gcggattaac
     1921 agtccgtcgc tctaccgact gagctatcgg ggaatggggc gtattatagc gtctggaaaa
     1981 aatgtgtcaa tccttaattt tggaaaaatg ggcgacaaaa cgacaagcat atgaatcaga
     2041 aagacattaa gaccgatgcc ttaaaaggat taccgttgta tgaatttcca cagccgtcat
     2101 cacaccatat ttaagcccga tgagccgttc tgccctcccc cgcttaaaac aatgccgtct
     2161 gaacttcgcc gcgttccaaa gccagtaaaa actgtttgcg gttcaacccg cccgcgtagc
     2221 cggtcagttt gccgtcgctg ccgatgacgc ggtggcaggg aatcaggata gatactttgt
     2281 tctgcccgtt ggcggcggca acggcgcgga cggctttggg gttgcccaaa cgctgcgcct
     2341 gctccttgta gctgcgcgtt tcgccgtaag gaatcgccaa gagcgcgtcc catgcctgct
     2401 tttgaaactc ggtgccaatc tgctccaaag gcgtggcaaa ggttttcaga cgacccttga
     2461 agtataagtc caattcctgc cgcaaaagtt gcgtccgctc atcctcccga aacacaaacc
     2521 gtccgcgcaa ggctttttgg acggcggcaa tttcctgttc caaatgcttc tgtccgacaa
     2581 actccagcag acacaatccc ttatttccga acaccgccag catctcgccc aaaggcgtgg
     2641 caatggcggc acacaccagc tcgttcaagc tgtcgggata acgcacttcc aacagacgga
     2701 tggctcggcg gatacggaca tattcttcag gcgcgcagcc gatattgtcc caaaaatccc
     2761 gatcgaactg cccggcttcg cattccgtca gattgggatg cggcataacg ccgcactcaa
     2821 aaacccgggt ttcgaggcaa tggcggattt catcccattt tgacggcaga ttgtttaagg
     2881 aaggcagggt aatcattcgt ttgctccgta tctctatcat ggatttggcg gcaaaatccc
     2941 caattctcgt cattcccgca cgccgatgca ggaacgggct atgacgtaaa tcttgagggt
     3001 tgggttgcgg caatgcctaa atatgcgata tttctaaagc ctcagggaaa ggaattaaag
     3061 acttcagacg acctgcaaag ggtcgtctga aaccacgatt tttgcatttg cgcattctgg
     3121 cacatcatcc aaccgtttcg gcacattcct gccgccgttg acagcctata atgaatccac
     3181 ttattcatca agcaaaggaa tcatctatgc aaacccgcat tctctccgcc gtactgctgg
     3241 ctttttcaac cgctgccttt gccgggggcg cattcacgct gcaattcgac aacccgtccg
     3301 aagacggcgg cttcacgcaa aaccagattt tgagcgcgcc ttacggcttt ggctgttcgg
     3361 gcggcaatgc ttcgcccgcg ctgtcgtgga aaaatccgcc cgccgggaca aaaagtttcg
     3421 tcctgaccgt ttacgataaa gacgcgccga ccggactggg ctggatgcac tgggtggtcg
     3481 ccgacattcc cgccgatgtc cgccgccgca atgcggcctc gctgcaatta agccgctgcg
     3541 ccaacatcgc cgaccggact gggctggatg cactgggtgg tcgccgacat tcccgccgat
     3601 gtccgccgcc gcaacgcggc ctcgctgcaa ttaagccgct gcgccaacat cgccgacgac
     3661 cagtccgcag ccatatcggc ggtaatcagt ttgcggattt gccgcatcag gttgacgcct
     3721 tcgtacacgg caaaaccgat gccgtcatgc tgcaaccacg ccaacacgcc gcaaagcgcg
     3781 gcctccgcca cattgtgcgg cactttttca tccgccagca ccgcagccgc ataatcaaac
     3841 gccgcgccca tccgcccggg atgcggcagc ttcaccgcat cgcacactgc ctgcgccgtc
     3901 ccgtattgtg cggcaaacct ttctatggct tcctgttcga aagcaatcca ttgcgcctga
     3961 tagaggccgt ctgaatcggg aatattaata acgtcaaacg tctgtccgcc tgccaacgca
     4021 accgcctcac ccgccgcaat cctcaattcg cgcctcgccc accgcagctt cttgcttccg
     4081 cgccgcacga taagcacagc tggttcatat accgccacgc tgcggtacaa ggcggtatga
     4141 tgttgcacga tgccgcccaa agcacccaat cgttcgcgcg tatgaaagta tagtggatta
     4201 aatttaaatc aggacaaggc gacgaagccg cagacagtac aaatcgtacg gcaaggcaag
     4261 gcaacgccgt actggtttaa atttaatcca ctatatctca aacccacgtt aggtctaagc
     4321 aaatggtcgg acatccttat ccgacagccc atcttctttt cagacggcat tgcaaattta
     4381 agtttgacgt gcgttcaaaa taaggcagtt aatgcgaagc caaattccgt cggcgtgcct
     4441 gcaacttgac tccctcccct gtgggggagg gttggggaga gggtaaaacg gggcagatac
     4501 agacaatatt tccgttaccg ccccgatgcc ctctccctaa ccctctccca cgggagaggg
     4561 aatggattgc cgtttaaata aaaaaatcta cataaaaatc aatgt
//
LOCUS       DAXIFS010000150         4588 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.150, whole genome shotgun sequence.
ACCESSION   DAXIFS010000150 DAXIFS010000000
VERSION     DAXIFS010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.150"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..263
                     /locus_tag="ACFOCA_001624"
     CDS             <1..263
                     /locus_tag="ACFOCA_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6988309.1"
                     /translation="NFCSFMEELLNDGSIRLHDYTDGIGIPLTGTSKEQVQKLKDIWP
                     TLEDAQAIWPEDPWYYLEWLWWDIACPIDLADLPNIDIYEQA"
     gene            648..2078
                     /locus_tag="ACFOCA_001625"
                     /pseudo
     CDS             648..2078
                     /locus_tag="ACFOCA_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224022.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
     gene            2097..2360
                     /locus_tag="ACFOCA_001626"
     CDS             2097..2360
                     /locus_tag="ACFOCA_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988310.1"
                     /translation="MDKEIKICPRCEQGYLYHAKPKYFSGEVILCDECYAMWLGDMKI
                     FYGQYGKDFYDYHEFMKDKGIEEINMWEGELFDHPYYEDEKFK"
     gene            2467..4588
                     /locus_tag="ACFOCA_001627"
                     /pseudo
     CDS             2467..4588
                     /locus_tag="ACFOCA_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249609.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
BASE COUNT         1377 a          996 c         1145 g         1070 t
ORIGIN      
        1 acaatttctg ttcttttatg gaagaactgt taaatgacgg ttcaatccgt ttacatgatt
       61 ataccgacgg tatcggaatt cctctaactg gaacttcaaa agaacaagtg cagaaattga
      121 aagacatatg gcctactttg gaagatgccc aagcaatatg gcctgaagac ccttggtatt
      181 acttagaatg gctttggtgg gatattgcgt gtccaataga tttggccgat ttgccgaata
      241 ttgatattta tgagcaagcg taggtatggt tagccgcctt tagcggcgta accgtacgca
      301 tatcagcaaa ctttataaaa taacaaggcc gtctgaaatc tgtttttcaa ctttttcaga
      361 cggccttgca acttggcatt tcattcgtac ggttacgccg ctaaaggcgg ctaaccgtac
      421 ctacgagctc tgataaaaat gatttatgga agcaagctgt agcctgcatg aaacctaaaa
      481 tccatgcgta aggtgtgtgc ttcagcgcgc acgcgttcca tgatttacgg ctcaatgccg
      541 tctgaaaagc tcaatttttt cagacggcat ttgttatgca agtaaatatt cagattccct
      601 atatactgcc cagatgcgtg cgtgctgaag acacccccta cgcttgctat ttgaaacagc
      661 tccaagtcac caaagacgtc aactggaacc aggtacaact ggcgtacgac aaatgggact
      721 ataaacagga aggcttaacc ggagccggag cagcgattat tgcgctggct gttaccgtgg
      781 ttactgcggg cgcgggagcc ggagccgcac tgggcttaaa cggcgcggcc gcagcggcaa
      841 ccgatgccgc attcgcctcg ctggccagcc aggcttccgt atcgctcatc aacaataaag
      901 gcgatgtcgg taaaaccctg aaggagctgg gcagaagccg cacagtgaaa aaactggttg
      961 tagcagcggc catcgcaggc gtatccaaca aaatcggtgc ttcctccctt gccacttgga
     1021 gcgaaacccc ttgggtaaac aacctcaacg tcaacttggc taatgcgggc agtgccgcgc
     1081 tgattaacac cgccgttaac ggcggcagtc tgaaagacaa tctggaagcg aatatccttg
     1141 cggctttggt gaatactgcg catggagagg cagcaagtaa aatcaaacaa ttggatcagc
     1201 actacattgc ccataagatt gcccatgcca tagcgggctg tgcggcagcg gcggcgaata
     1261 agggcaagtg tcaggacggc gcgattggtg cggtcgtggg ggagattgtc ggggaggctt
     1321 tggttaagaa taccgatttc agcggtatga ctgcttctga aattgaaaaa gctaaagcga
     1381 atattactgc gtatgcaaaa ttggtagccg gagcgactgt aggtgttaca ggaggcaatg
     1441 ttgatgtggc ggcaaatgct tccgaaacag ctgttaaaaa taatgcatta gatattattt
     1501 gggatatcgg caacctcgta tgggacggcg gtaaatggat ttacgccaaa tctattggcg
     1561 ataagcagat ggctcgagaa gcggcgattg attttggtgt ggatgccgcc gcagctgccg
     1621 ttccctttgt tccggcaggt gcgactaaaa tcagccgagg cggggcttat gttctgaagg
     1681 cgggagacga agcagttgat acggctaaag ccatacagga aattcagaag cagaccggaa
     1741 tcaagcttac ttatgataag gttaataagg tttggacaac accggcgggg ttagattatg
     1801 ggttagatgc taagcatggt aataggatta aacatgtttt agcccataca attccaaatc
     1861 caaacaaacc tgttcattct gtttttaatg tgtcccgtaa agaagttttg cctttggttg
     1921 atgaagcttg gagaatgaaa ggaaatcctt tgccaaatga ttcatccgta tatcttgtag
     1981 atatgaagaa acctattgga acaaaaggag aaacaaaagt gcggattgtt gtgcaaaaag
     2041 gaacaaataa aatcatttct gcatatcctc agaaataatt aagaaaggaa tctcttatgg
     2101 ataaagaaat taaaatttgc ccaagatgtg agcaaggcta cctttatcat gcaaagccta
     2161 aatatttctc tggggaggtc attttatgcg atgaatgtta tgctatgtgg cttggggata
     2221 tgaaaatttt ttacggacaa tatggaaaag atttttatga ttatcatgag tttatgaaag
     2281 ataaaggcat agaagaaata aatatgtggg aaggagagct ttttgatcac ccatattatg
     2341 aggatgaaaa atttaaataa ttgattttct gttccccgaa tttgggaaat acgatgatat
     2401 tttaaaccca aatattattt aaagtagcaa taggccgtct gaatatccgt ttttcagacg
     2461 gcctcaatgc aactgctggc agccgaaggc attcaccaac accaattgaa tgttcagaaa
     2521 agtacccgtt tcatcggcat caaagtgggt aaaagcaatt acagcaaaaa cgagctgaac
     2581 gaaaccaaac tgcccgtacg cgttatcgcc caaacagcca aaacccgttc cggctgggat
     2641 accgtactcg aaggcaccga attcaaaacc accctttccg gagccgacat acaggcaggg
     2701 gtgggtgaaa aagcccgagc cgatgcgaaa attatcctaa aaggcatcgt taaccgcatc
     2761 caaaccgaag aaaagctgga atccaactcg accgtatggc aaaagcaggc cggaagcggc
     2821 agcacggttg aaacgctgaa gctaccgagc tttgaagggc cggcactgcc taagctgacc
     2881 gctcccggcg gctatatcgc cgacatcccc aaaggcaacc tcaaaaccga aatcgaaaag
     2941 ctggccaaac agcccgagta tgcctatctg aaacagctcc aagtagcgaa aaacatcaac
     3001 tggaatcagg tgcagcttgc ttacgacaga tgggactaca aacaggaggg cttaaccgaa
     3061 gcaggtgcgg cgattatcgc actggccgtt accgtggtca cctcaggcgc aggaaccgga
     3121 gccgtattgg gattaaacgg tgcggccgcc gccgcaaccg atgcagcatt cgcctctttg
     3181 gccagccagg cttccgtatc gttcatcaac aacaaaggcg atgtcggcaa aaccctgaaa
     3241 gagctgggca gaagcagcac ggtgaaaaat ctggtggttg ccgccgctac cgcaggcgta
     3301 gccgacaaaa tcggcgcttc ggcactgaac aatgtcagcg ataagcagtg gatcaacaac
     3361 ctgaccgtca acctagccaa tgcgggcagt gccgcactga ttaataccgc catcaacggc
     3421 ggcagcctca aagacaactt gggcgatgcc gcactgggtg cgatagtcag taccgtacac
     3481 ggagaagtag cgagcaaaat caaatttaat ctcagcgaag actacattac ccacaagatt
     3541 gcccatgcca tagcgggctg tgcggcagcg gcggcgaata agggtaagtg tcaggatggt
     3601 gcgatcggtg cggctgtggg cgagatagtc ggggaggctt tgacaaacgg caaaaatcct
     3661 gccactttga cagctaaaga acgcgaacag attttggcat acagcaaact ggttgccggt
     3721 acggtaagcg gtgtggtcgg cggcgatgtg aatacagcgg cgaatgcggc taaagtcgcg
     3781 attgaaaata acctattatc tcaagaagag tatgctctta gagaaaaatt gatcaaaaaa
     3841 gccaaaggga aaggcctatt atctttagat tggggcagcc tgaccgaaca agaggcaagg
     3901 cagtttatct atttgattga gaaagatcga tattctaatc aattgcttga ccgatatcaa
     3961 aaaaatccaa gtagtttaaa taatcaagaa aaaaatattc ttgcatattt tattaaccaa
     4021 acctctggag gtaacacagc ttgggcagct tcgatactga aaacgcccca gtcaatgggt
     4081 aatctcacta ttccttccaa agatattaat aacaccttat cgaaagccta tcaaacattg
     4141 agtcgttatg attcttttga ttacaaatca gctgttgccg cacaacctgc actttactta
     4201 ttaaacggac cgcttggctt cagtgtcaaa gcagctactg tggcagcagg aggatataac
     4261 attggacagg gagcgaaagc aatctctaat ggagaatatc tgcatggtac agttcaggtt
     4321 gttaatggca cattgatggt tgcaggatct gtatctgcac aggctgcaat atcggccaag
     4381 cctgcacctg ttacccgtta tctgagcaat gacagtgctc ctgctttaag acaagcttta
     4441 actgctgaaa gccagagaat ccgcatgaaa ctgccggaag agtatcgaca aatagggaat
     4501 cttgcgatag caaaaattga tgttaaagga ttaccgcaaa ggatggaagc atttagttct
     4561 ttccaaaaag gggaacatgg atttattt
//
LOCUS       DAXIFS010000151         4529 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.151, whole genome shotgun sequence.
ACCESSION   DAXIFS010000151 DAXIFS010000000
VERSION     DAXIFS010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4529
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.151"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(498..604)
                     /locus_tag="ACFOCA_001628"
                     /pseudo
     CDS             complement(498..604)
                     /locus_tag="ACFOCA_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(1023..1793)
                     /gene="xth"
                     /locus_tag="ACFOCA_001629"
     CDS             complement(1023..1793)
                     /gene="xth"
                     /locus_tag="ACFOCA_001629"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6988311.1"
                     /translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
                     AALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVGGVRVI
                     NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPE
                     KWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDH
                     ILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW"
     gene            complement(1853..2134)
                     /locus_tag="ACFOCA_001630"
     CDS             complement(1853..2134)
                     /locus_tag="ACFOCA_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HFC6988312.1"
                     /translation="MNTIPLHTILKLMAHPERMAILIQLLDSERNIAELAKSLSLPAT
                     AVSGHLSRLRVEGLVDFTRYHRIIEYRLISEDAATILHTVRDLENKRVA"
     gene            2191..2469
                     /locus_tag="ACFOCA_001631"
     CDS             2191..2469
                     /locus_tag="ACFOCA_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988313.1"
                     /translation="MIVIIFINLIINQIFMDDCTGLYVPFPTFFANTRKGGLSDGIKL
                     PPLPCLTLLPNGIIRIVQKMPYNRRTSCPADASVPSGKQNTCLKCCFF"
     gene            complement(2602..3483)
                     /gene="nadC"
                     /locus_tag="ACFOCA_001632"
     CDS             complement(2602..3483)
                     /gene="nadC"
                     /locus_tag="ACFOCA_001632"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HFC6988314.1"
                     /translation="MPSENTLFPLPDTLLRPMVEQALSEDLGRRGDITSAAVIAPDKT
                     AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQVVRAGQTLAAVEGNARAL
                     LAAERTALNYLTHLSGISTATARAVAEVAKYGTDIVCSRKTIPLLRVLQKYAVRAGGG
                     VNHRMGLDDAVLIKDNHLAYCDSIAQAVRQAKQAVGPLTCVEIEVDTLAQLDEAIAAG
                     AERILLDNMDDETLKEAANRCHTQTAHPHTVYCEASGGIGFDRLKRVAQTGVDGIALG
                     YLTHSSRSLDIGLDFLA"
     gene            complement(3558..4496)
                     /locus_tag="ACFOCA_001633"
     CDS             complement(3558..4496)
                     /locus_tag="ACFOCA_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988315.1"
                     /translation="MDAYPEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGTLLPNGP
                     LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEHGMPVLYVSYLGLVREA
                     ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVGRLRIWANSADTEEVRQKRLKRIH
                     LCWGVEPENWSEEYVLQRYEMLYESGLIEEAAEPQANFDFALTGQPMRHDHRRVLATA
                     LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
                     TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
BASE COUNT         1043 a         1130 c         1212 g         1144 t
ORIGIN      
        1 tgaaactgat gcagatatag tggattaaca aaaatcagga caaggcgacg aagccgcaga
       61 cagtacaaat agtacggcaa cgctgtactg gtttaaattt aatccactat attttgtaat
      121 agctgccatt atgcctacta ggatatatac cttctatata atccttattt aaataaaaac
      181 ccttataaaa atctgtgtta tctgtcggga ttgaaaaaaa gattttatct ttctcatcag
      241 gtttatattt gctatcaata tcaaaaagag aataaggatt acaatgagtt cgacatacta
      301 ggtaaaaatt tatatcttgg atcatgaaat attcgatatt tatcaggatc gaaagatgct
      361 aaaaattcat caatattggt actggatatt ttgtcatcac taataaacat cgctagagat
      421 gggcgacttt gattttccat ttgttgatta gtaaaggata taaatactaa cttgccattg
      481 tcaaaccaca tagatttata tagtggatta aatttaaacc agtacgtcgt tgcctcgcct
      541 tgccgtacta tttgtactgt ctgcggcttc gtcgccttgt cctgattttt gttaatccac
      601 tatagttatt gcctttggga gaatcaattc tgacagcaca taacatagat ttatctttac
      661 agtcgttata ttgagtttca tcaaactcaa ctgcatggca caataaaggc aataggaaaa
      721 acagggttat taatttatta ctatatataa gacggctttc tatttattcg aaaataaatc
      781 tagttttcaa tatttgattt tgttttggat tagtgtacat aataaatttt actgctccaa
      841 aatctgatat taaccctatg tatttcataa atttttcagg aaaataggct gtgtttgaac
      901 aatccgccga tttcggctgt ttgccgggga aaggcaatta tttttcagtc agatagaaag
      961 ctatcctatt gaataaattg aagataagga tgcttgtcaa cgccatatca aaacacggtc
     1021 ttttaccaat cgaattctgc cgtcaccggc gcgtggtcgc tcggacgctc cagcgcgcgc
     1081 gtctccaaat cgacgcggac atccttcaac gccgccgcca tcgcaggcga caccaaaata
     1141 tggtcgatac gcaggcccag tttgcgttgg aacatcgcgc cgcgatagtc gaaccaggta
     1201 tagaacgcgc cttcgggatg gacttggcgc aggctgtcgg tcagtcccaa atccagcagg
     1261 ttttgaaacc actgccgttc gacggacgaa cagtggattt tttcgtgcca tttttcaggg
     1321 tcgtaacagt ccgcatcggc aggcgcgata ttgaaatcgc ccagcaacac cagtttgccg
     1381 tggcgggtca tttcatcgcg gacaaactcc gtcagtgcgg caaaccactg ttccttatat
     1441 ttgaatttgg ggctgtccaa agcctcgccg ttgacgcaat agacattgat gacgcgcacg
     1501 ccgccgacgg ttgccgcaat cacgcgccgt tgcggatcgt ccggcagtgc gggcaaaccg
     1561 aaatgcacgt cctgcggcac gctgcggctg acgattgcca cgccgttgta ggttttctgc
     1621 ccgctccaaa cacagtgcca gcccatcatt tgcaaagcgg cggccggaaa tttgtcctga
     1681 tcgagtttga gttcctgcaa aaccaaaata tcgggcggat tgtcggcaag caggttttgc
     1741 acctgcggca gccgcacatt gagcgaattg acattccaag tggtgatttt cataacattt
     1801 ccgaaaaatg ctgtctgaaa cgttcagacg gcaaaaggaa aggattctaa cactatgcca
     1861 cgcgtttgtt ttccaaatcg cgaaccgtgt gcagaatcgt tgccgcgtct tcggaaatca
     1921 ggcggtattc gataatgcgg tggtaacgcg taaagtccac cagaccttcc acgcgcagtc
     1981 ggctcaaatg gccggaaacg gcggtggccg gcagggataa ggattttgcc agttcggcga
     2041 tattgcgttc gctgtccaac agttggatca gtatcgccat acgttcggga tgcgccataa
     2101 gtttgagtat ggtgtggagc ggtattgtgt tcatcggtat tcctaaaacc tttgccgccc
     2161 gccaagcgga ttgacgggcg acagatatgg atgattgtga ttatctttat aaatcttatt
     2221 ataaatcaaa tatttatgga tgattgtaca ggattgtatg ttccttttcc cacttttttt
     2281 gcaaacacgc gtaaaggcgg gctttcagac ggcataaaac tgccgcccct accctgcctc
     2341 accctgttgc cgaacggaat catccgcatt gttcaaaaga tgccttacaa ccgccgcacg
     2401 tcttgccctg ccgatgcctc cgtgccttcg ggcaaacaaa atacctgcct gaaatgctgt
     2461 tttttctaaa gcatcacgac cttcacgaaa aatgccgtct gaagaatctt tcagacggca
     2521 tttcctcctt gaggcaataa ccggattacg gttaggcggt tccttgtctg acatatcaga
     2581 caactgccga caccctaaaa ctcatgccaa gaaatccaaa cctatgtcca acgagcggct
     2641 gctgtgggtc agatagccga gggcgatgcc gtccacgccg gtttgcgcca cgcgcttcag
     2701 gcggtcgaag ccgatgccgc ccgatgcttc gcaatagacg gtgtgggggt gggcggtttg
     2761 cgtgtggcag cggtttgccg cttctttcag ggtttcgtcg tccatgttgt ccagcaaaat
     2821 ccgttccgcg cccgctgcga tggcttcgtc cagttgtgcc aacgtgtcca cttcgatttc
     2881 tacgcaggtc aacggtccga ccgcctgttt tgcctgccga acggcttggg cgatgctgtc
     2941 gcaataggcg aggtggttgt ctttgatgag tacggcatcg tccaaaccca tgcggtggtt
     3001 cacgccgccg cccgccctga cggcgtattt ttgcaggacg cgcagcaggg ggatggtttt
     3061 gcggctgcac acgatgtctg taccgtattt ggcgacttcg gcaacggcac gcgcggtggc
     3121 ggtggagatg ccgctcaagt gcgtgaggta gttgagcgcg gtgcgttcgg cggcgagcag
     3181 cgcgcgggcg ttgccttcga cggcggcaag cgtctgacct gcgcggacga cttgcccgtc
     3241 tcggatttcg gcttggaagc ggacggacgg atccatcgtc tgaaaggcga ggcgcgccaa
     3301 gtccatgccg gcgataacac cgtcttcgcg gctgacgagg aaaagtttgg cggttttatc
     3361 gggcgcgatg acggcggcgg acgtaatgtc gccgcgcctg cccaaatctt cgctcaaggc
     3421 ttgttccacc atggggcgca acagggtgtc gggcagtggg aagagggtgt tttcagacgg
     3481 catggggttt cctttgttga aaaagattga tgttgcaccg atgggcaaaa cttcgtttga
     3541 tgtcgtctga aaacgggcta acggctgccc agcggcaatc cgatgtccga aatcagcctg
     3601 tcgggcagga cgtcgtcgcg gaagcggcaa agctgcgcgg gacggccttt gctgcccgat
     3661 acgccggtat ccgacggctc gataaggttt tgctgctgaa tctggcggcg gaagttttgc
     3721 ttgtgcagca atctgccgct gatggcttcg acgctgtttt gcagttgcag caacgtgaat
     3781 tcgggcggca tcagttcgaa aatcacgggg cggtatttga ttttggcgcg caggcgggac
     3841 agggcggtcg ccagtacgcg gcggtggtcg tggcgcatgg gctgccccgt aagcgcgaag
     3901 tcgaagtttg cctgcggctc ggcggcttcc tctatcaggc cgctttcata caacatttca
     3961 tagcgttgca aaacgtattc ttccgaccag ttttccggtt cgacgcccca acacaaatga
     4021 atgcgcttga gccgcttttg gcggacttcc tccgtgtccg ccgagtttgc ccaaatgcgc
     4081 aggcggccga cgacggcgtc gcgctgcccg ccgtcggtgc gcaagtcttc ccacgggaaa
     4141 tagccgtagc agtcctgcca tttcgcatcg ggatgcagga tgctgtcggc tgcctcgcgc
     4201 accagcccca aatagctgac gtacaagacg ggcatgccgt gttcgttgcg gcggtgggta
     4261 tcgacaaagg tgtaaagctg ttccacatag cccataggct gcgaagtctg cttggcaacc
     4321 cacagcttca cgcccgcctg cagggaattg cgcagagggg agagcgggcc gttgggcagg
     4381 agcgtgcctt gggcgacggt caacacccgc aggccgccgt cggtaacggc aatcaatacg
     4441 ggaaccagct cgacgatgct ttgcggcggg gcttcggctt cggggtaggc atccatgctc
     4501 ggctttctgc gggtggaaaa ggctttatt
//
LOCUS       DAXIFS010000152         4483 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.152, whole genome shotgun sequence.
ACCESSION   DAXIFS010000152 DAXIFS010000000
VERSION     DAXIFS010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4483
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.152"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(353..1399)
                     /gene="recA"
                     /locus_tag="ACFOCA_001634"
     CDS             complement(353..1399)
                     /gene="recA"
                     /locus_tag="ACFOCA_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFC6988316.1"
                     /translation="MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGS
                     LGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPV
                     YARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
                     DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFY
                     SSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELID
                     IGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGIEMHIT
                     EGTQDETDGERPEE"
     gene            1653..2417
                     /gene="aroD"
                     /locus_tag="ACFOCA_001635"
     CDS             1653..2417
                     /gene="aroD"
                     /locus_tag="ACFOCA_001635"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HFC6988317.1"
                     /translation="MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLEQIKNMPFD
                     IAEFRADFLECAGSIGEILHHTQTVRDALPDKPLLFTFRRHGEGGSFPCSDDYYFKLL
                     DALIESRLPDIIDIELFSGETAVRRAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLK
                     QMEDCGADICKIAVMPQSAEDVLTLLSATLKAKELAAKPIVTMSMGQTGAVSRLAGQV
                     FGSSITFGSGTQNSAPGQIGVSALRATLDCLENGAD"
     gene            2437..4452
                     /gene="rep"
                     /locus_tag="ACFOCA_001636"
     CDS             2437..4452
                     /gene="rep"
                     /locus_tag="ACFOCA_001636"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HFC6988318.1"
                     /translation="MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNV
                     GYLPHTVAAITFTNKAAAEMQERVAKMLHKSQTRGLTICTFHSLGMKILREEANHIGY
                     KKNFSILDSTDSAKIIGELLGGTGKETVFKAQHQISLWKNDLKTPEDVVQTASNIWEQ
                     QTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTN
                     TCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYR
                     STARILKIANKVIENNPKLFTKKLWSKLGEGEPVKVVACQNEQHEADWVVSQIVKQKL
                     IGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRL
                     LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNR
                     QHLQAFMDMFGSYRAKAETGEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVSDL
                     VSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLV
                     GCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRF
                     IDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDSMKKGNPSD"
BASE COUNT         1078 a         1208 c         1215 g          982 t
ORIGIN      
        1 tgaattttgt tcagcaagtg caaagtgttg cacataaaag ggcgcaggat agaggcaaag
       61 cgggcgtagg tcgggctgta gcaactgtat ttttcacccc gtcgggcaaa aatatagtgg
      121 attaacaaaa accagtacgg cgttgcctcg ccttagctca aagagaacga ttctctaagg
      181 tactgaagca ccaagtgaat cggttccgta ctatctgtac tgtctgcggc ttcgtcgcct
      241 tgtcctgatt tttgttaatc cactatacca aaactcaaat caagccgttc ggaggctgct
      301 caaaaaaaac ggtacttcgc aacagaagta ccgtttatcg ggatttcagg ttttattctt
      361 cggggcgttc gccgtcggtt tcgtcctgcg tcccttcggt gatgtgcatt tctatgccgt
      421 tgagggcgcg gatttttgcg tcgatttcgt cggcaatttc gggattttcc ttcagccaga
      481 cgcggacgtt gtctttgccc tgaccgattt tcgcgccgtt gtagctgtac cacgcgccgg
      541 atttgttgat gatgtcgttt ttcacgccga tgtcgatcaa ttcgccttcc caactgatgc
      601 cttctccgta gaggatgtca aactctgcct gacggaacgg cggcgcgact ttgtttttga
      661 tgactttgac gcgggtttcg ttgcccaata cttcttcacc ttttttgatg gatccggtgc
      721 ggcggatgtc gaggcggacg gaagaataga atttcagcgc gttgccgccg gtcgtggtct
      781 cggggctgcc gaacattacg ccgatcttca tccggatttg gttgatgaac acaaccagcg
      841 tgttggtttt tttgatgtgt ccggtcagtt tgcgcaaagc ctggctcatc aggcgcgcct
      901 gcagtccgac atggctgtcc cccatatcgc cttcgatttc ggctttgggg acgagtgcgg
      961 ctacggaatc gacgactacc atatctatgc cgcccgaacg gacgagtgtg tcgcagattt
     1021 ccaaagcctg ttcgccggta tcgggctggg acaggtaaag ctcttcgact tttacgccga
     1081 gtttgcgggc gtaaacggga tcgaaggcgt gttcggcatc gacaaaggcg cacacgccgc
     1141 cgtttttctg gcattgggcg acggcttcga ggcagagggt ggttttgccg gaggattctg
     1201 ggccgaagat ttcgacgatg cgcccgcgcg gcagaccgcc gactccgagg gcgaggtcta
     1261 atccgagcga tccggtggaa atgacttcga ggttttcttc ctgctggctg ccgtccattt
     1321 tcatgatggc gcctttgccg aaactttttt cgatttgcgc cagtgcggcg gcaagtgctt
     1381 tgcttttgtc gtctgacatt ggggttactc cggaacaaat gcggtatgtg ggatgcggcg
     1441 caacacgggc tgcggcgcgg gatgtgtatc gttttcccga tgtgcgggct atcggtaatg
     1501 ctgcttcacg aggttgccat tatcgcatat ttccttgctt gccgatatgc gccaggacgc
     1561 ggcggcttgt gccggaatgg aatctggatg ccgtctaaaa ggcggccggc tttgttataa
     1621 tggcggctgt tttttctgtg tgtgcctgtt ttatgtgttc ctgccttgtt gtcaaaaata
     1681 ccgttatcgg aagcggacgc accaaaatcg ccgtgccgct tgtcgcccgc gatgccgccg
     1741 aactttccgc cgtacttgag caaatcaaaa atatgccctt cgatattgcg gagttccgcg
     1801 ccgacttttt ggaatgcgcg ggcagtatcg gcgaaatatt gcaccacacg cagaccgtcc
     1861 gcgacgcgct gcccgacaag ccgctgctgt ttacgttcag acggcatggc gaaggcggct
     1921 cgttcccgtg ttcggacgat tattatttta aactgctcga cgcgctgatc gaaagtcgcc
     1981 tgcccgacat tatcgatatc gagctgtttt ccggcgaaac cgccgtccgg cgcgctgtgg
     2041 cgaatgctca aaaaaacggc atcgccgccc tgctctgcaa tcatgagttt caccgcacgc
     2101 cgccgcaaga agaaatcgta tgccgtctga aacagatgga ggactgcggc gcggacatct
     2161 gcaaaattgc ggtgatgccg caaagcgcgg aagatgtgct gactttgctt tccgccacgc
     2221 tcaaagcgaa agagcttgcc gccaaaccga ttgttacgat gtcgatgggg cagacggggg
     2281 cggtcagccg gcttgccgga caggtgttcg gctcaagcat cacgttcggt tcgggaacgc
     2341 aaaactccgc gccggggcaa atcggcgtat ccgccctccg tgcgacactc gactgcctcg
     2401 aaaacggcgc agactgattt cagacagcat caaaacatga tgaaactcaa tccccaacag
     2461 ctcgaagccg tccgctacct cggcggccca ctgctcgtcc ttgccggtgc aggcagcggc
     2521 aaaaccggcg tgattactca aaaaatcaag tatttgattg tcaatgtcgg ctatctgccg
     2581 cataccgttg ccgcgattac ctttaccaat aaagccgccg cggaaatgca ggagcgcgtc
     2641 gccaaaatgc tgcacaaatc gcaaacgcgc gggctgacga tttgcacgtt ccactctttg
     2701 ggcatgaaga ttctgcgcga agaggcgaac catatcggtt acaaaaaaaa cttctccatt
     2761 ctcgattcta ccgacagcgc gaaaatcatc ggcgaactct taggcggtac gggcaaagaa
     2821 accgtattca aggcgcagca ccagatttcc ttgtggaaaa acgatttaaa aacgcctgaa
     2881 gatgtcgttc agacggcatc gaacatttgg gaacaacaaa ccgcacgcgt gtatgcgagc
     2941 tatcaggaaa ccttacaaag ctatcaggca gtggacttcg acgacttgat ccgcctgcct
     3001 gccgtgctgt tgcagcaaaa cagcgaagtg cgcaacaaat ggcagcggcg gctgcgttat
     3061 ctgctggttg acgaatgcca agatacgaat acctgccaat ttacgttgat gaaacttctg
     3121 accggcgcag aaggtatgtt taccgccgtc ggcgacgacg accagtccat ctacgcatgg
     3181 cgcggcgcga acatggaaaa cctgcgcaaa atgcaggaaa actatccgca gatgaaggtc
     3241 atcaaactgg agcaaaacta ccgctccacc gcgcggattc tcaaaatcgc caacaaagtc
     3301 atcgagaaca accccaagct gttcaccaaa aaactttggt cgaaattggg cgaaggcgag
     3361 cccgtcaaag tcgttgcctg ccaaaacgag cagcacgaag ccgactgggt cgtcagccaa
     3421 atcgtcaaac aaaaactcat cggcggcgac aaaacccaat atgccgattt cgccgtgttg
     3481 taccgcggaa agcatcaggc gaggattttc gaggaagcat tgcgcggcgc gcgcatcccc
     3541 taccgtctct ccggcggaca aagctttttc gacaaagccg aaatcaaaga cgtgttgtct
     3601 tatgtgcggc tgcttgccaa ccccaatgac gatcccgcct ttctgcgtgc cgttaccacg
     3661 cccaaacgcg gcatcggcga tgtcacgctg ggcaagctca acacttacgc gcacgaacac
     3721 gaatgcagcc tgtatgaagc cgcacaaaac gaagaagccc ttgccacgct gaacaatacc
     3781 aaccgccaac acctgcaagc ctttatggat atgttcggca gctaccgcgc caaagcggaa
     3841 accggcgaag caggcgagtt catcaacagc ctgctcgaag aaatcgacta tgaaaaccat
     3901 ttgatgcaaa acgaagaagg caaggccggc gaaatcaaat ggcgcaatgt cagcgatttg
     3961 gtatcatggt ttgcgcgaaa aggcggggaa gacggcaaaa acatcatcga actcgcccaa
     4021 accgtcgcct tgatgacgct tttggaagga aaagacgaag aagaaaccga tgccgtctcg
     4081 ctatccacgc tacacgccgc caaaggtttg gagtatccgt atgttttcct tgtcggttgc
     4141 gaagaaggcg ttttgccgca caacgacagt atcgaagagg gcaacgtcga agaagaacgc
     4201 cgcctgatgt acgtcggcat cacccgcgcc aaacgccaac tcacgctgac ccactgcgtc
     4261 aaacgcaaaa aacaaggcac atggcagttc cccgaaccca gccgattcat agacgaaatg
     4321 ccgcaggaag atttgaaaat cctggggcgc aaaggcggcg agccgattgt cagcaaggaa
     4381 gaaggcagac gcaaccttgc cgatataatc ggaaggctcg acagcatgaa aaaaggcaat
     4441 ccgtcggatt aaaccaagat agggaaacga agccggagac aat
//
LOCUS       DAXIFS010000153         4475 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.153, whole genome shotgun sequence.
ACCESSION   DAXIFS010000153 DAXIFS010000000
VERSION     DAXIFS010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4475
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.153"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..212
                     /locus_tag="ACFOCA_001637"
     CDS             <1..212
                     /locus_tag="ACFOCA_001637"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988319.1"
                     /translation="TILKNDHVRLGNYHTLFPLITKARMTLKDAPRDKPKRHIPSAKQ
                     NARRLTPAGSSNTLSILHQPVLQTD"
     gene            complement(177..713)
                     /locus_tag="ACFOCA_001638"
     CDS             complement(177..713)
                     /locus_tag="ACFOCA_001638"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HFC6988320.1"
                     /translation="MDLREVKLGGETIYEGGFVSISKDKVRLPNGNEGQRIVIRHPGA
                     ACVLAVTDEGKVVLVRQWRYAANQATLELPAGKLDVAGEDMAACALRELAEETPYVAD
                     SVRLLYSFYTAVGFCNEKMYLFEAEGVRLGSTLANDEDEITETVLMSKEEVRQALAND
                     EIKDGKTLIGLQYWLMKD"
     gene            complement(747..1103)
                     /gene="folB"
                     /locus_tag="ACFOCA_001639"
     CDS             complement(747..1103)
                     /gene="folB"
                     /locus_tag="ACFOCA_001639"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFC6988321.1"
                     /translation="MDKIFLHGMKADTLIGVYGWERERLQTLIVDLDIGVPEKAGSDD
                     DIANTVHYAEVCETLRRHLKEQDFLLLEALAEYIADLVLGYFGAVWVRVKIVKPGILE
                     GVREVGVEIERGKRED"
     gene            1159..1761
                     /gene="plsY"
                     /locus_tag="ACFOCA_001640"
     CDS             1159..1761
                     /gene="plsY"
                     /locus_tag="ACFOCA_001640"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFC6988322.1"
                     /translation="MFNIPAVAVSYLIGSLSFAVIVSKYYGMDDPRTYGSGNPGATNV
                     LRSGKKKAAVLTLLGDAAKGLVAVLLARVLQEPLGLSDSAIAAVALAALVGHMWPVFF
                     GFKGGKGVATALGVLLALSPATALVCALIWLVMAFGFKVSSLAALTATIAAPLAALFF
                     MPHLSWIWATLLIALLVLFRHKSNISNLLKGKEGKIGEKR"
     gene            1849..2694
                     /locus_tag="ACFOCA_001641"
     CDS             1849..2694
                     /locus_tag="ACFOCA_001641"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008988 - rRNA
                     (adenine-N6-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HFC6988323.1"
                     /translation="MLSYRHAFHAGNHADMLKHFTLFLVLQYFNRKDKPYWYIDTHGG
                     AGVYNLEGSEAQKVGEYRQGIALLRQAKNLPTELNGFIAHIQKILPSPKLYCGSPWLA
                     QSLTRVGDKLRLFELHPTDFVHLQNNMGEAGLGKRGQVLREDGYKELISLLPPPPRRA
                     TVLIDPPYEEKQDYRRVTETLKAALKRFESGCYLIWYPCLSREESRKLPEELKKLLPD
                     NYLHAELHVHAPKADGFGMHGSGMFVINPPYLLAEQLAANLPALTRLLAQDEGARYLL
                     DSKIR"
     gene            2940..3914
                     /locus_tag="ACFOCA_001642"
     CDS             2940..3914
                     /locus_tag="ACFOCA_001642"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFC6988324.1"
                     /translation="MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGAL
                     AGVLGMAGTGNIQGEDQKKLDVIANNIMIDTLKANPAVAGLASEEEDSFVSAGENGRY
                     LVLFDPLDGSSNIDVNISVGTIFSILEKPEGALATESFLQTGRQQLAAGYVLYGPQTQ
                     LVFTFGHGVYMFTLNAENEFVLTKEKPKVPESTKEFAINMSNRRHWLPPVQQYIDELL
                     AGETGTRGKNYNMRWVASMVAEIHRILMRGGVFMYPQDKRDPSKPGKLRLMYEANPMA
                     LILEQAGASASNARQDILGIRPESLHQRVAVIMGSSEEVDYLNRLHSK"
     gene            complement(4073..4291)
                     /locus_tag="ACFOCA_001643"
     CDS             complement(4073..4291)
                     /locus_tag="ACFOCA_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFC6988325.1"
                     /translation="MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSG
                     AETIDELKKAKLKLKDELYAILQKAAGK"
     gene            complement(4267..>4475)
                     /locus_tag="ACFOCA_001644"
     CDS             complement(4267..>4475)
                     /locus_tag="ACFOCA_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988326.1"
                     /translation="GKAENLCVKRDIVNVFINRTAVLKENFAVSDKTLDKNIIFVIIN
                     VKIQFDFLTVNQERKAICSQNTVI"
BASE COUNT         1112 a         1353 c          968 g         1042 t
ORIGIN      
        1 taaccattct taaaaatgat catgttcgtt tgggtaatta tcataccctt ttccctctta
       61 ttactaaagc acgaatgact ttaaaggacg cgcccagaga caagccgaaa aggcatatcc
      121 catccgccaa acaaaatgcc cgccgactta ctccggcggg cagctccaac accctgtcaa
      181 tccttcatca gccagtattg caaaccgatt aatgtcttgc cgtctttaat ttcatcgttt
      241 gccaatgcct gacggacttc ctccttcgac atcaatacgg tttccgtaat ctcgtcttcg
      301 tcattggcaa gcgtactgcc caagcgtacg ccttccgcct cgaacagata cattttttcg
      361 ttgcaaaaac cgaccgccgt ataaaaactg tacaacaggc gtacactgtc ggcaacataa
      421 ggcgtttcct ccgccaattc tcgcagcgca cacgctgcca tatcctcgcc cgccacatcc
      481 agcttgcccg caggaagttc caatgtcgcc tgatttgccg cataccgcca ctgccgtacc
      541 aaaaccactt tcccctcgtc cgtaaccgcc aacacgcatg ccgcaccggg atgacggatg
      601 acgatacgct gcccttcgtt accgttgggc aacctgacct tatccttgct gatgctgacg
      661 aaaccgccct cgtaaatggt ttcgccgcct aattttactt ccctcaaatc cacttcatat
      721 ctcctttccg tttcctattc tgccgttcaa tcttcacgct tgccgcgctc gatttccacg
      781 ccaacctcgc gcacgccttc caaaataccc ggcttgacga ttttcacgcg cacccacacc
      841 gcgccgaaat atcccaaaac caaatcggca atatattccg ccaacgcttc caaaagcagg
      901 aaatcctgtt ctttcagatg tcggcgcagc gtttcgcata cctcggcata atgcaccgta
      961 ttggcaatat cgtcgtccga acccgctttc tcgggaacgc cgatgtccaa atcgacaatc
     1021 agggtctgca accgttcgcg ttcccagccg tacacgccga taagcgtatc tgccttcatg
     1081 ccgtgcaaaa agattttatc cataatccgc cccgtttttt gctaaaataa ccgcaccatt
     1141 ctaagtaaag taccgcaaat gttcaacata ccggctgttg ctgtttccta tctgatcggc
     1201 tcactttctt tcgccgtcat cgtgtccaag tattacggca tggacgaccc gcgcacctac
     1261 ggatcgggca atccgggggc aaccaatgtt ttacgcagcg gcaaaaaaaa ggcggccgtg
     1321 ctgacgctct tgggcgatgc cgccaaaggt ttggttgccg ttttgcttgc acgcgtgctt
     1381 caagaaccgc tcggtttatc cgacagcgca atcgctgccg tcgcactcgc cgcgctggtc
     1441 gggcatatgt ggccggtgtt tttcggattt aagggcggca aaggcgtggc aacggcattg
     1501 ggcgtgcttt tggcactctc tcccgcaact gccttggtct gcgcgttgat ttggcttgtt
     1561 atggcattcg gcttcaaggt gtcctccctt gccgcattaa ccgccacaat cgccgccccc
     1621 cttgctgcgc tgttttttat gccccacctt tcttggattt gggcgacgct ccttatcgcc
     1681 ctgctggtgt tgttccgcca caaaagcaat atcagcaacc tgcttaaagg caaagaaggc
     1741 aaaatcggcg aaaaacgctg attcggcatt tgttttccat tacgtcatgc cgtctgaaac
     1801 catatttccg cgttcagacg gcatttccgc acaaacggct ttcataccat gctcagttac
     1861 agacacgcat tccacgccgg caaccacgcc gatatgctca aacacttcac cttgttttta
     1921 gtgctgcaat atttcaaccg caaagacaag ccctactggt acatcgacac gcacggcggc
     1981 gcgggtgtgt acaatctcga aggcagcgag gcacaaaaag tcggcgaata ccggcaaggc
     2041 atcgccctac ttcgacaagc aaaaaacctg ccaaccgagt taaacggctt tatcgcgcac
     2101 atacaaaaaa tcctgccctc gcccaaactt tactgcggtt ctccgtggct ggcgcaatcg
     2161 ctgacccgtg tcggcgacaa attgcgcctg tttgagctgc accccaccga ctttgtccat
     2221 ctgcaaaaca atatgggcga agcaggattg ggcaaacgcg gacaagtgtt gcgcgaagac
     2281 ggttacaaag agctgatttc cctgctgccg cccccgccgc gccgcgccac cgtcctcatc
     2341 gacccgccct atgaggaaaa acaggactac cggcgtgtaa cggaaacgct gaaagccgct
     2401 ttaaaacggt ttgagtccgg ctgttatctc atttggtatc cctgcctcag ccgcgaagaa
     2461 agccgcaagc tgcccgaaga attgaaaaaa ctcctgcccg acaactacct tcacgccgaa
     2521 cttcacgtcc acgcgccgaa agccgacggt ttcggtatgc acggcagcgg aatgttcgtc
     2581 atcaatccgc cctatctgtt ggcggaacaa ttggcggcaa acctccccgc cctgacgcgg
     2641 ctgctggcgc aagacgaagg cgcgcgctac cttttggaca gcaaaatccg ctgaccccga
     2701 tgccgtctga aacccttcag acaacatctc ccgtcaaata aacaaaaccg gacgatatac
     2761 cggcagtcgg cacttttaag aataaatatc ccctcatccg cctgccgcgt tccgacttgc
     2821 cccatgccgt ttttttacac tacaatcccc tagactatcc tgcaaaacgc accaaaggaa
     2881 tacgccacaa taacctgccg cctttcagac ggcacaaacc tttccgaaac gagcaaacta
     2941 tggacacact gacccgattc ctccccgaac acctgcaaca aaaccagctg cccgaagcac
     3001 tcggcggcgt tttactgtcc gttgtttccg cctgcaccga aatcaacgcc aaagtccgcc
     3061 tcggcgcact ggccggcgta ttgggtatgg cgggcacggg caatattcag ggcgaagacc
     3121 aaaaaaaact ggatgttatc gccaacaaca tcatgattga cacactcaaa gccaaccctg
     3181 ccgttgccgg tttggcaagc gaggaagaag actctttcgt aagtgccggt gaaaacggac
     3241 gctatctcgt cctattcgac cctttagacg gatcgtccaa tattgatgtc aacatttccg
     3301 tcggtacaat tttctccatc cttgaaaaac ccgaaggcgc attggcaacc gaatcattcc
     3361 ttcaaacggg cagacagcag cttgccgctg gttacgttct ttacgggcct caaacccagc
     3421 tcgtattcac attcggacac ggcgtatata tgttcacgct caatgccgaa aacgaatttg
     3481 tgctgacaaa agaaaaaccg aaagtacccg aaagtaccaa agaatttgcc atcaatatgt
     3541 ccaaccgccg ccactggctg ccccccgtcc aacaatacat cgacgagctc ttggcgggcg
     3601 aaaccggcac gcgcggcaaa aactacaata tgcgctgggt agccagcatg gttgccgaaa
     3661 tccaccgcat actgatgcgc gggggcgtgt tcatgtatcc gcaagacaaa cgcgacccgt
     3721 ccaaacccgg caaactgcgc ctgatgtatg aagccaatcc tatggccctg atactcgaac
     3781 aagccggcgc atcggcaagc aacgcccgtc aggacatact cggcatccgt cccgaaagcc
     3841 tgcaccagcg cgtcgccgtc attatgggca gcagcgaaga agtggattac ctcaaccgcc
     3901 tgcattcaaa ataaaaggca gcctgaccga taaagaaagg cggcagcgcg catccgacgc
     3961 tgccgccgat atttcgttta tagccttaaa aagatagaaa accacctttc cgaacggcaa
     4021 aaatgccgtc tgaaaagttt tcagacggca ttttaaaaat taaagcccga atttatttgc
     4081 ccgctgcttt ttgcaggatg gcgtacaact cgtctttcag tttcaatttg gcttttttca
     4141 gctcatcgat ggtttccgca ccgctggtaa ccggattgtt gaccagaccg gtaattttat
     4201 cgtccagctc gttgtgttcg tcgaacagac gggcgaagcg ggaattttcc tgtttcaatt
     4261 tggaaatcaa atcacggtat tctgggaaca tatcgctttc ctctcttggt ttacggttaa
     4321 aaagtcaaac tgaatcttta cattaattat aacaaagata atatttttat ccagtgtttt
     4381 atcggatacg gcaaaatttt cttttaacac cgccgtccgg ttgataaaaa cgttgacaat
     4441 atcacgcttt acgcataaat tttcagcctt tccta
//
LOCUS       DAXIFS010000154         4441 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.154, whole genome shotgun sequence.
ACCESSION   DAXIFS010000154 DAXIFS010000000
VERSION     DAXIFS010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4441
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.154"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(61..780)
                     /gene="pyrH"
                     /locus_tag="ACFOCA_001645"
     CDS             complement(61..780)
                     /gene="pyrH"
                     /locus_tag="ACFOCA_001645"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFC6988327.1"
                     /translation="MTQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVK
                     MGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARV
                     QSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVML
                     KATNVDGVYTADPKKDSSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGI
                     AKEGSLKRVVTGENEGTLVHC"
     gene            complement(997..1851)
                     /gene="tsf"
                     /locus_tag="ACFOCA_001646"
     CDS             complement(997..1851)
                     /gene="tsf"
                     /locus_tag="ACFOCA_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFC6988328.1"
                     /translation="MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIK
                     SGAKAGKLAGRTAAEGVLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAE
                     KKPASVEELSELVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVE
                     YKGSEDVARKIGMHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMV
                     EGRIRKFLAEITLNGQAFVMNPDQTVAQFAKENGTEVVSFVRYKVGDGIEKAVVDYAA
                     EVAAAAKV"
     gene            complement(1980..2708)
                     /gene="rpsB"
                     /locus_tag="ACFOCA_001647"
     CDS             complement(1980..2708)
                     /gene="rpsB"
                     /locus_tag="ACFOCA_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFC6988329.1"
                     /translation="MSQITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLE
                     KTLPMFQDAQEAVRRLVANKGTVLFVGTKRQARDIIREEATRAGMPFVDHRWLGGMLT
                     NYKTVKQSIKRLEEKTAALENAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDA
                     IFVIDTGYQKGTLVEAEKLGIPVIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIA
                     DAVLEGKNQALQETVAAAQEAAAE"
     gene            complement(2909..3118)
                     /locus_tag="ACFOCA_001648"
     CDS             complement(2909..3118)
                     /locus_tag="ACFOCA_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988330.1"
                     /translation="MWHIVAIGYLFVAVMFSAAQPSIARTLIYLVFWAVLPTVFTVFV
                     VTIRRRNRLMKQQEQAEFEQQRAQR"
     gene            3196..3777
                     /locus_tag="ACFOCA_001649"
     CDS             3196..3777
                     /locus_tag="ACFOCA_001649"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFC6988331.1"
                     /translation="MRNEEKHALRRELRGRRSQMGWDVRAAATVKINRLLKRYIKHGR
                     KIGVYWPMGKELRLDGFVRAAQKRGAKLYLPYIEPRSRRMWFTPYPESGMERERIRGR
                     ARLNVPQFAGRKIRVHGLSVLLVPLVGIDREGYRLGQAGGYYDATLAAMKYRLQAKTV
                     GVGFACQLVDRLSVEAHDLPLDGFVSEAGILCF"
     gene            3838..4428
                     /locus_tag="ACFOCA_001650"
     CDS             3838..4428
                     /locus_tag="ACFOCA_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HFC6988332.1"
                     /translation="MSERIILPVLSLGGVRLEPLDVHHEMGLREAVCDGEVWKLGVTS
                     APHPDRVADYIGTALATRLAFAVVDEEAGRVVGTTAYYHFEPQIPRLDIGFTWYAASA
                     RRTRINTCCKIMLLDYAFDVLACRCVGWRTDILNLASQRAIERLGAEKDGVLRMHMLR
                     KDGSVRDTVVYSMLREDWCKNREILTGRLAGYGVQV"
BASE COUNT          957 a         1027 c         1285 g         1172 t
ORIGIN      
        1 catataataa atggctgtct gaagcccata tgcgactata tctgccgaca ctatggtcaa
       61 tcagcagtga accagcgtac cttcgttttc accggttact acacgtttga gcgagccttc
      121 tttagcaatg ccgaatacga caatattgag cttgcgttcg cggcagaggg cgaaagcggt
      181 ggcatccatc actttgaggt ttttcaacaa ggcttcgtca aaagtaatgg tttcgtagcg
      241 cgtggcggat gagtcttttt tggggtctgc ggtgtacacg ccgtcaacgt tggtggcttt
      301 gagcatcacg tcgcagttca tttccgcacc gcgcaatgcg gcggcagtgt cggtcgtgaa
      361 gaacgggtta ccggtaccgg cggcaaaaat cacgactttg ccttcttcca aatattggat
      421 ggctttgggg cgggcgtagg tttcagcgat ttgctgcata gacagtgcgg attgtacgcg
      481 cgctttgatg cctaaagttt caaatgcgtc tttgagtgcc aacgcgttca tcacggtcgc
      541 catcatgccc atgtagtcgg cggtggcgcg atccatgctg cctgcttggg cggatacgcc
      601 ccggaaaata ttgccgccgc cgacaacaat accgacttgc acgcccattt taacgacttc
      661 ggcaatttcg ccgacagttt gaacgatggt atcgtgattg atgccgaacg gatcggaacc
      721 catcagggat tcgccggaga gtttcagtaa tacgcgtttg tatttgattt gctgtgtcat
      781 ggataccttg ctttcttgaa tgtcgtcggt cggagttggg tcgtctgaat ttcaaacggt
      841 cggaatatta atgatagggt gtgtcggttt attattgttt tgttttaaga cggtctgaat
      901 attcggtcgt cttaaaatag gtaccgcaaa cggttttctc aaaaaaaagc accctgattc
      961 gtttggaatc caggtgcttt ctttttcata agtgccttac actttggcgg ctgcggctac
     1021 ttcggctgcg tagtcgacaa cggctttctc gataccgtcg cctactttgt agcggacgaa
     1081 gctgaccact tcagtgccgt tttctttggc gaattgggca acagtttgat cggggttcat
     1141 cacgaatgct tggccgttca gagtgatttc agccaagaat ttgcgaatac ggccttcaac
     1201 cattttagcg gcgatgtcgg caggtttgcc ggaagcgatg gcttgttcgg tgtagatgtg
     1261 gcgttctttt tcaacggttt cggcatctac ttcggcttcg cttacgcatt gtggtttagc
     1321 ggcaacaatg tgcataccga ttttgcgtgc tacgtcttca gagcctttgt actcaaccaa
     1381 tacgccttcg gtcgccaatg cgccgtggat gtaggcaacc agttggttgg cagtgtcgat
     1441 cacttggaag cgacggacag acatgttctc gcccaatttg gcgatgatgg ctttgcgttc
     1501 tgcttcaacc agttcgctca gttcttcaac agaagccggt tttttctcgg cggcagtttt
     1561 cgcaacgaag ttggcaaatt ctacgaagcc cgcgtcttta gcaacgaagt cggtttcgca
     1621 gtttacttcg accaatgcgc cgacattgcc gttgatcgcg taagccaata cgccttcggc
     1681 agcagtacgg ccagccagtt taccggcttt cgcaccagat ttaatacgca ggatttcttc
     1741 ggctttgtcg aagttgcctt cggcttcaac caaggctttt ttgcattcca tcatgcccag
     1801 gccggtagca gcgcgcaggt cggcaaccat ttttgcagta atttctgcca ttttgaatct
     1861 cctagatttt tgggaaatac ggaaaggatt ttccgcattc gggaatcgtg tgccgcgaac
     1921 ggacgttcag acggcatatt tgagaaaagg ggcataacgc ccctcttcgg tttgccggat
     1981 tactcggcag cggcttcttg ggcagcggct acggtttctt gcagcgcttg gtttttgcct
     2041 tccaaaactg cgtcagcgat gccgcggcag tacaggcgga tggctttggc ggagtcgtcg
     2101 ttgccgggga tgacgtattt cacgccgtca gggctgttgt tggtatcgac tacggcgata
     2161 acggggatgc ccagtttttc agcctcgacc agagtacctt tttggtagcc ggtatcgata
     2221 acgaaaatcg cgtcgggcag gcctttcatg tttttgatac cgcccaaaga acgttccagt
     2281 ttttcaacat cgcgttgcat ttccagaatt tcttttttgc tgaaaccgct ttcggcagca
     2341 ttttccaagg ctgcggtttt ttcttccagg cgtttgatgg attgcttaac ggttttgtag
     2401 ttggtcagca taccgcccaa ccaacggtga tcgacgaaag gcatgccggc gcgggtcgct
     2461 tcttcgcgga tgatgtcgcg ggcttggcgt ttggtaccta cgaacaatac tgtacctttg
     2521 ttggcaacca gacgacgtac ggcttcttgc gcgtcttgga acatcggcag ggttttttcc
     2581 aggttgacga tatggatttt gttgcgcgca ccgaaaatgt attgagccat tttcgggttc
     2641 cagaaacggg tttggtggcc gaagtggaca ccggcttcaa tcatctgacg catagtaatt
     2701 tgagacattt tgatttcctt gaaagggtta agggcacaca ttcaatcgca tagaacttga
     2761 tagaccgcgc ctattgtcaa gcacccttcg gcgaaagtgg gcataagttt taaaaaataa
     2821 aagagtgttt ccgaaatgga aaactgacgg attatagcgg ataagaggtc gtctgaaaag
     2881 ggattcaggg ttttgtgccg ctgtcttttt accgttgtgc acgctgctgt tcgaattctg
     2941 cctgttcctg ttgcttcatc aggcggttgc ggcggcggat ggtcacgaca aagaccgtga
     3001 acacggtggg cagcaccgcc caaaaaacca aataaatcaa ggtgcgcgca atactcggct
     3061 gcgcggcgga aaacatcacg gcaacaaaaa gatagccgat ggcgacaatg tgccacattg
     3121 tgtgcgtcct gtttgaatgt taacaaaatc gttataatcg caacattcta ccgcaatcct
     3181 gaaaggccgt ctgaaatgag gaacgaggaa aaacacgccc tgcgccgcga attacgcggg
     3241 cggcgttcgc aaatggggtg ggacgtgcgg gcggcggcaa cggtaaaaat taaccgcctg
     3301 ctcaaacgtt atatcaagca cggtcggaaa atcggcgtgt attggccgat gggcaaggaa
     3361 ttgcgtttgg acggctttgt ccgcgcggcg caaaaacgcg gcgcaaaact ttatctgcct
     3421 tatatcgaac cgcgttcgcg gcggatgtgg tttacgccgt atcctgaaag cggaatggaa
     3481 cgggagcgca tacggggcag ggcgaggttg aacgtgccgc agtttgcagg gcgcaaaatc
     3541 cgcgtgcacg gtttgtcggt attgctcgtt ccgcttgtcg gcatagaccg cgaaggctac
     3601 cgtttggggc aggcaggcgg ctattacgat gcgacgcttg cagcgatgaa ataccgtttg
     3661 caggcaaaaa ccgtgggcgt gggctttgcc tgccagttgg tggacagact gtcggtcgag
     3721 gcgcacgacc tgccgctgga cggttttgtg tcggaggcgg ggatattgtg tttttagccg
     3781 ttcagacggc attttgaacg gaaatgccgt ctgaaggcgg aatattggga gaaaaggatg
     3841 tcggaaagga taatactgcc ggtcttgtcg ttgggcggcg ttcgtctcga accgttggat
     3901 gtgcatcatg aaatgggttt gcgcgaggcg gtttgcgatg gggaagtttg gaagctggga
     3961 gtaacgtccg cgccccatcc ggatagggtg gcagactata tcgggacagc attggcaacg
     4021 cgtttggcgt ttgcggttgt cgatgaagag gcgggcaggg tggtcgggac aacggcgtat
     4081 tatcattttg aaccgcagat tccgcgtttg gatatcggat tcacatggta tgcggcatcg
     4141 gcacggcgga cacggataaa cacctgttgc aaaatcatgc tgttggatta cgcatttgat
     4201 gttttggctt gccgttgcgt gggatggcgc acggatattc tgaaccttgc ctcgcaacgt
     4261 gccatcgaac ggctgggtgc ggaaaaagac ggcgtgctgc gtatgcatat gctccgtaaa
     4321 gacggcagtg tgcgcgatac ggtcgtgtac agtatgctga gggaagattg gtgcaaaaac
     4381 agggaaatcc tgaccggcag gttggcaggg tatggcgtgc aggtgtgagg cagtattttc
     4441 a
//
LOCUS       DAXIFS010000155         4405 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.155, whole genome shotgun sequence.
ACCESSION   DAXIFS010000155 DAXIFS010000000
VERSION     DAXIFS010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4405
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.155"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..324
                     /locus_tag="ACFOCA_001651"
     CDS             <1..324
                     /locus_tag="ACFOCA_001651"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988333.1"
                     /translation="RKQIGGRPGKPAPNASGKYAYRWKTQPHPPPGVSDGTAAAGNVR
                     RLRHRRTQNRMPAPATIRQIPLFFPNRLQVSPIRRVMPPPPFKGNARVNGFAVGKAAG
                     YRYVS"
     gene            431..955
                     /gene="nspA"
                     /locus_tag="ACFOCA_001652"
     CDS             431..955
                     /gene="nspA"
                     /locus_tag="ACFOCA_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein NspA"
                     /protein_id="HFC6988334.1"
                     /translation="MKKALATLIALALPAAALAEGASGFYVQADAAHAKASSSLGSAK
                     GFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLG
                     ARLSLNRASVDLGGSDSFSQTSTGLGVLAGVSYAVTPNVDLDAGYRYNYIGKVNTVKN
                     VRSGELSAGVRVKF"
     gene            1091..1480
                     /locus_tag="ACFOCA_001653"
     CDS             1091..1480
                     /locus_tag="ACFOCA_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6988335.1"
                     /translation="MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVV
                     GNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPF
                     PARAAVGVASLPKGVQVEAEAVLVLNA"
     gene            1558..2388
                     /locus_tag="ACFOCA_001654"
     CDS             1558..2388
                     /locus_tag="ACFOCA_001654"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HFC6988336.1"
                     /translation="MAHYAIGDIQGCFDELTALLGKIGFNHGTDTLWLTGDIVNRGPK
                     SLETLQFCIRHENSVQIVLGNHDLHLLAVGCGEGAPKRSDTIEPILKHPDGKKMLDWL
                     RAQPLLIREGSRVMVHAGILPQWRIAKAESLAREAEAELRGKKYVKFFSKMYGNKPAA
                     WDEGLEGYARLRFIVNAFTRMRALTFKNELDFDYKSTVKKMPPYLRPWFKAPDRQNLD
                     RTIIFGHWSSLGYTNADNVISLDTGALWGGQLTAVNLETEEITQVQAAGGIDWKSFAK
                     "
     gene            2403..3860
                     /locus_tag="ACFOCA_001655"
     CDS             2403..3860
                     /locus_tag="ACFOCA_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFC6988337.1"
                     /translation="MHKILPIAHVLSRLGMLFSFILLIPAALSYAFSDGAYTAFATTA
                     TVTLSGSCIVRLATLRFRRELRPRDGFTLVLMLWLAFAAMAAMPMYLYFPNMGFTDAF
                     FESMSGLTTTGATVIPHVDGLAPSVNFWRHMLNWLGGMGIIVLAVAILPMLGVGGTQL
                     FKAEIPGIDKESKMSPRISQVAKKLWFGYTLITILAAACLHFAGMGWFDAVCHAMATL
                     SLGGFSTHDASIAYYNSPLIEAVIIVFTIVGGINFANHFAALNSRSLKTYWKDEECRT
                     MLLLLSGSILAAALYLWHTGYYAGFTESLRYTAFNFVSIGLANGLANTDFAQWPLLIS
                     LWMFFLANILANSGSTGGGIKTIRALVLFKFSLREMMVLLHPKAVRTVKISGKAIPDR
                     LALTVMSFIFIYFMTVVLFSFLLMASGMEFTTAFTAVIACITNAGPGLGEVGPAGNYA
                     GLDVMQKWICVTAMLLGRLEIFTVFILFTPAYWKK"
     gene            complement(3901..4290)
                     /locus_tag="ACFOCA_001656"
     CDS             complement(3901..4290)
                     /locus_tag="ACFOCA_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988338.1"
                     /translation="MWKISKENCEDLGFAIVCMFYDAINLSEFKLWLDIVVRDTPIDT
                     IPLYIFDLIDFDKSIGEIYDVIGVVNYGYISNDQKNALTGIAFLRGIDVYDPPISKEK
                     ALKALEKYPEIYQRFQHFFPFVELPLL"
BASE COUNT         1037 a         1432 c          983 g          953 t
ORIGIN      
        1 cgcaaacaaa tcggcggccg cccgggaaaa cccgccccga acgcgtccgg aaaatatgct
       61 tatcgatgga aaacgcagcc gcatcccccg ccgggcgttt cagacggcac agccgccgcc
      121 ggaaatgtcc gacgcttaag gcacagacgc acacaaaacc gtatgcctgc acctgcaaca
      181 atccgacaga taccgctgtt ttttccaaac cgtttgcaag tttcacccat ccgccgcgtg
      241 atgccgccgc caccatttaa aggcaacgcg cgggttaacg gctttgccgt cggcaaagca
      301 gccggatacc gctacgtatc ttgaagtatt gaaaatatta cgatgcaaaa agaaaattta
      361 agtataatac agcaggattc tttaacggat tcttaacaat ttttctaact gaccataaag
      421 gaaccaaaat atgaaaaaag cacttgccac actgattgcc ctcgctctcc cggccgccgc
      481 actggcggaa ggcgcatccg gcttttacgt ccaagccgat gccgcacacg caaaagcctc
      541 aagctcttta ggttctgcca aaggcttcag cccgcgcatc tccgcaggct accgcatcaa
      601 cgacctccgc ttcgccgtcg attacacgcg ctacaaaaac tataaagccc catccaccga
      661 tttcaaactt tacagcatcg gcgcgtccgc catttacgac ttcgacaccc aatcgcccgt
      721 caaaccgtat ctcggcgcgc gcttgagcct caaccgcgcc tccgtcgact tgggcggcag
      781 cgacagcttc agccaaacct ccaccggcct cggcgtattg gcgggcgtaa gctatgccgt
      841 taccccgaat gtcgatttgg atgccggcta ccgctacaac tacatcggca aagtcaacac
      901 tgtcaaaaac gtccgttccg gcgaactgtc cgccggtgtg cgcgtcaaat tctgatatgc
      961 gccttattct gcaaaccgcc gagccttcgg cggttttgtt ttctgccacc gcaactacac
     1021 aagccggcgg ttttgtacga taatcccgaa tgctgcggct tctgccgccc tattttttga
     1081 ggaatccgaa atgtccaaaa ccatcatcca caccgacaaa gcccccgccg ccatcggcgc
     1141 gtacagccaa gccgtccgag caggcgacac cgtttacatg agcggtcaaa tccccctcga
     1201 tcccgccacg atgaccgtcg tcggcaacgg cgatttccgc gccgaagcgc gccaagtgtt
     1261 ccaaaacctg caagccgtcg ccgaagcggc aggcggcacg ctggccgaca tcgtcaaact
     1321 caacgcctac ctgaccgact tgggcaattt tgccgtcttc aacgaagtga tggcggaatt
     1381 tattgccgag cccttccccg cccgcgccgc cgtcggcgtt gcctccctgc caaaaggcgt
     1441 gcaggtcgaa gccgaagccg tcctcgtttt gaacgcataa ttccacgttc ggactgcatg
     1501 atatttcaaa accatgccgt ccgaaccgca acactttccc acttcacaac atctgcaatg
     1561 gcacattacg caatcggcga catacaaggc tgtttcgacg aactgaccgc gctgctcggc
     1621 aaaatcggtt tcaaccacgg cacggacacc ctctggctga cgggcgacat cgtcaaccgc
     1681 ggcccgaaat ccctcgaaac gctgcaattc tgcatccggc acgaaaacag cgtgcaaatc
     1741 gtcctcggca accacgacct gcacctgctc gctgtcggct gcggcgaagg cgcgcccaaa
     1801 cgcagcgaca caatcgaacc catactcaaa caccccgacg gaaaaaaaat gctcgactgg
     1861 ctgcgtgcgc aaccgctgtt gatacgcgag ggcagccgcg tgatggtaca cgccggcatc
     1921 ctgccgcaat ggcgcatcgc caaagccgaa tcgctcgcta gagaagccga agccgaactg
     1981 cgcggcaaaa aatacgtcaa attcttctcc aaaatgtacg gcaacaaacc ggccgcgtgg
     2041 gacgaaggtt tggaaggcta tgcccgcctg cgcttcatcg tcaacgcctt cacgcggatg
     2101 cgcgccctga cctttaaaaa cgaactggat ttcgactaca aatccacagt gaaaaaaatg
     2161 ccgccttacc tgcgcccgtg gttcaaagcc cccgaccggc aaaacctcga ccgcaccatc
     2221 atcttcggac actggtcctc gctgggctac acgaatgccg acaacgtcat ctcgctggac
     2281 accggcgcgc tgtggggcgg acagctgacc gccgtcaacc tcgaaacgga agaaattacc
     2341 caagtccaag ccgccggcgg catagactgg aaaagcttcg caaaataacg gaccgcccca
     2401 ctatgcacaa aatcctgccc atcgcccacg tcctctcccg actgggtatg ctgttttcct
     2461 ttatcctgct gatacccgcc gccctctcct acgccttttc ggacggcgcg tacaccgcct
     2521 tcgccaccac cgcgaccgtt accctttccg gctcgtgcat cgtccggctc gccaccctcc
     2581 ggttcaggcg cgaactgcgc ccgcgcgacg gctttaccct cgtcctgatg ttgtggctgg
     2641 cgtttgccgc tatggctgcg atgccgatgt acctgtattt cccgaatatg ggctttaccg
     2701 acgcattttt tgaatcgatg tcgggactga ccaccaccgg cgcgaccgtc atcccccacg
     2761 tcgacgggct cgccccctcc gtcaactttt ggcggcatat gctcaactgg ctgggcggga
     2821 tgggcatcat cgtccttgcc gtcgccatcc tgcctatgct cggcgtaggc ggcacgcagt
     2881 tattcaaagc cgaaatcccc ggcattgaca aagaaagcaa aatgtcgccg cgcatttccc
     2941 aagtggcgaa aaaactttgg ttcggctaca ccctgatcac catcctcgcg gcagcctgcc
     3001 tgcattttgc cgggatgggc tggttcgatg ccgtctgtca cgcgatggcg accctctcgc
     3061 tgggcgggtt ttccacccac gatgccagca tagcttatta caactccccc ctcatcgaag
     3121 cggtcatcat cgttttcacc attgtcggcg gcatcaattt tgccaaccat ttcgccgccc
     3181 tcaacagccg cagcctcaaa acctattgga aagacgaaga atgccggacg atgctgctgc
     3241 tgctctccgg cagcatcctt gccgccgccc tgtacctgtg gcacaccggc tattacgccg
     3301 gttttaccga atccctgcgc tacaccgcct tcaacttcgt ctccatcgga ctggcaaacg
     3361 ggctggccaa caccgacttc gcacaatggc cgctcctgat ttccctgtgg atgtttttcc
     3421 tcgccaacat cctcgccaac tccggctcga ccggcggcgg catcaaaacc atacgcgccc
     3481 tcgtcctgtt caaattcagc ctgcgcgaaa tgatggtgct gctgcacccc aaagccgtcc
     3541 gcaccgtcaa aatcagcggc aaggccatac ccgaccgcct cgcgctgacc gttatgtcct
     3601 tcatcttcat ctactttatg accgtcgtcc tcttcagctt cctgctgatg gcgagcggta
     3661 tggaatttac caccgccttc accgccgtca tcgcctgcat caccaacgcc ggccccggcc
     3721 tgggcgaagt cgggcccgcc ggcaattacg ccggtttgga cgtgatgcag aaatggatct
     3781 gcgttaccgc catgctcttg ggcaggctgg aaatcttcac cgtcttcatc ctcttcaccc
     3841 ccgcctactg gaagaaataa aaaatgccgt ctgaaaactt ttcagacggc atcttgtcct
     3901 ttaaagaagc ggaagctcta caaaaggaaa gaaatgctga aacctctgat aaatttcagg
     3961 atatttctct aaggctttta atgctttttc ttttgaaata ggcggatcat agacatctat
     4021 cccccttaag aaggcaatgc ccgttaatgc atttttttga tcatttgaaa tgtaaccata
     4081 attaacgact ccaattacat cataaatttc ccctatactc ttatcaaaat caatcaaatc
     4141 aaaaatatac aatggaattg tatcaatagg agtatctctg acaactatat ccaaccataa
     4201 tttaaattca gaaagattaa tagcatcata gaacatacag actattgcaa atcctaaatc
     4261 ttcacaattt tctttactaa ttttccacat aattatttac ctttatccat tgcttcccaa
     4321 ccgatacatc cggtatttta gcttctcctt ttccgtcaaa cactcctttg gttacctgct
     4381 ttgtgtcaaa aataccgtct gaaag
//
LOCUS       DAXIFS010000156         4372 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.156, whole genome shotgun sequence.
ACCESSION   DAXIFS010000156 DAXIFS010000000
VERSION     DAXIFS010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.156"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            281..1402
                     /gene="dnaJ"
                     /locus_tag="ACFOCA_001657"
     CDS             281..1402
                     /gene="dnaJ"
                     /locus_tag="ACFOCA_001657"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFC6988339.1"
                     /translation="MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAE
                     EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
                     MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTS
                     PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVN
                     IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAT
                     AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPV
                     NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
     gene            1598..3616
                     /locus_tag="ACFOCA_001658"
     CDS             1598..3616
                     /locus_tag="ACFOCA_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFC6988340.1"
                     /translation="MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
                     FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
                     PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
                     GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
                     VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDMEMAAFAMKLWKEKVRFIGAGTIGI
                     AAVWTLLMLLKPMVEGMKMSFKSFGGGAPAAERAEQDLSPKAMIFWVLAMMFVLGVSF
                     YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSV
                     VVISLVLLLVGESGGLLADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
                     ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
                     TIASGIFAHNLEWVYIFTGIAIGAVLIAADLVLKKSSGGKLALPVLAVGMGIYLPPSV
                     NMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFII
                     AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMIIFARRVLKAGR"
     gene            complement(3660..4217)
                     /gene="rfbC"
                     /locus_tag="ACFOCA_001659"
     CDS             complement(3660..4217)
                     /gene="rfbC"
                     /locus_tag="ACFOCA_001659"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6988341.1"
                     /translation="MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTF
                     VQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILS
                     AENKRQLWVPEGFAHGFYVLSDEAEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE
                     PNLSPKDLAGKTWAQAEKLRLTLSR"
     gene            complement(4271..>4372)
                     /locus_tag="ACFOCA_001660"
     CDS             complement(4271..>4372)
                     /locus_tag="ACFOCA_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HFC6988342.1"
                     /translation="WRNGWLSDEKLEELARPMAKNQYGQYLLRLLKK"
BASE COUNT          919 a          987 c         1292 g         1174 t
ORIGIN      
        1 gataaaaaat aaaataaggg gaagtctgca gccgcatcaa atgccgtctg aacatgcgtt
       61 cgggcggcgt ttttataaca aaaacacttc atggcggttg gttttatgcc tgtctaagtt
      121 tttgtgtcgt gcatacctga agatttcaga cggcatcggt ttatgctgtc tgaaaagtgt
      181 attccgtttc agtttgtaag ctatggcagt ctgtttgtct tgtgttttgc gcaattgccc
      241 ttattttgag ccgtgatttt attttgaatt agatgaaaaa atgagtaatc aagattttta
      301 tgcgacgctg ggtgtggcaa gaacagctac cgatgatgag attaaaaaag cctaccggaa
      361 attggcaatg aaataccatc ccgaccgcaa tcctgacaat aaagaggcgg aagagaagtt
      421 taaagaagta caaaaggcgt atgaaacttt gtccgacaag gaaaagcgcg ctatgtacga
      481 ccagtatggt catgcggcgt ttgaaggcgg cggacagggg ggcttcggag ggtttggcgg
      541 atttggcggt gcgcagggtt ttgactttgg ggatattttc agccaaatgt ttggaggcgg
      601 ttcggggcgc gcccagcctg attatcaggg tgaggacgtt caagtcggta tcgaaatcac
      661 gcttgaagaa gccgcaaaag gtgtgaagaa acgcatcaat attccgactt atgaagcgtg
      721 tgatgtctgt aacggcagtg gcgcgaaacc ggggacatcc ccggaaacct gcccgacttg
      781 caaaggttcg ggtacggtgc acatccagca ggcgattttc cgtatgcagc agacttgtcc
      841 gacctgccac ggtgcgggca aacacattaa agaaccttgc gtcaaatgcc gtggcgcggg
      901 gcggaataag gcggtcaaga cggtggaagt caatattccc gccggtatcg atgacgggca
      961 gcgtatccgt ttgagcggcg aaggcgggcc gggtatgcac ggtgcgcctg ccggcgactt
     1021 gtatgtaacc gtccgcattc gggcgcataa gattttccaa cgcgacggtc tggacttgca
     1081 ttgcgaactg ccgatcagtt ttgccacggc tgctttgggc ggggagttgg aagtgccgac
     1141 cttggacgga aaggtcaagc tcaccgtccc caaagaaacc caaaccggca ggaggatgcg
     1201 cgtgaagggt aagggtgtca aatctttacg cagcagcgcg accggcgatt tgtactgcca
     1261 tattgttgtc gaaacgcctg tcaatttgac cgaccgtcaa aaagagcttt tggaagaatt
     1321 tgagcggatt tctaccggct tggaaaacca aacaccgcgc aagaaatcgt ttttagacaa
     1381 gctgcgcgat ttgtttgatt gattttaagg ttcggaaaca agcagccgta tcggggaatc
     1441 tccctgatac ggctgttttt gtttgtttaa aaatagtttt tattttcaat ggggtatggg
     1501 gcagggtggg ataactgttt ttaactgttc tttttaaaac ttgacatcat ggcgcgatgc
     1561 caacaatatg tgaacgtctg ttgtcaaagg aagaataatg aataaatctt tatccgggtc
     1621 ggtagaagaa taccgcgaac tgacgctccg aggcatgata ctcggtgcat tgatcactgt
     1681 aatttttact gcgtccaacg tttacctcgg tttgaaagtc gggctgacct ttgcctcgtc
     1741 gattccggcg gcggtgattt cgatggcggt tttaaagttt ttcaaaggca gcaatatttt
     1801 ggaaaacaac atggtgcaga cccaagcttc ggcggcgggt acgctttcga ccatcatctt
     1861 cgtcctgccc ggtttgctga tggcgggcta ctggagcggt ttcccgttct ggcagacgac
     1921 gcttttatgt attgccggcg ggattttggg ggtgattttc accattccgc tgcgttacgc
     1981 gatggtggtg aaaagcgatt tgccttatcc ggaaggtgtg gcggctgctg aaattttgaa
     2041 agtgggcggt catgaagaag gggataaccg tcagggcggc agcggcatca aagagctggc
     2101 ggccggcggt gcgttggcgg gattgatgag cttttgcgcc ggaggtctgc gcgtgattgc
     2161 cgacagcgcg agttattggt ttaaaagcgg tacggcgatt ttccagctgc cgatgggctt
     2221 ttcactggca ttgttgggcg cgggctattt ggtcggactg acgggcggta tcgccatcct
     2281 gttgggcatt tcgattgctt ggggcattgc cgtgccgtat ttctcctcac acattccgca
     2341 accttccgat atggaaatgg cggcgtttgc gatgaagctg tggaaggaga aagtgcgttt
     2401 tatcggtgcg gggactattg gcattgcggc ggtttggacg ctgttgatgc tgctcaagcc
     2461 gatggtggaa ggcatgaaga tgtcgttcaa gagttttggc ggcggtgcgc ccgctgcgga
     2521 acgcgccgaa caggatttgt cgcctaaggc tatgattttt tgggtgctgg cgatgatgtt
     2581 tgttttaggc gtgtcgtttt accactttat cggcgattcg cacattacgg gcggcatggc
     2641 ttggcttttg gtggtcgttt gcacgctttt ggcttccgtc atcggctttt tggtcgccgc
     2701 cgcctgcggt tatatggcag gtttggtcgg ctcgtcttcc agcccgattt ccggcgtggg
     2761 catcgtgtcc gtcgtcgtta tttcactggt tttgctgctg gtaggcgaat ccggaggttt
     2821 gttggcggat gaggctaacc gcaaattttt gctggcactg actttgtttt gcggctcggc
     2881 agtaatctgc gtggcttcga tttccaatga caacctgcaa gacttgaaaa ccggctacct
     2941 gctcaaagcc acgccttggc ggcagcaagt cgccctgatt atcggctgta tcgttggtgc
     3001 gctggttatt tcgcccgtgt tggaactgct ttacgaagcc tacggcttta ccggcgcaat
     3061 gccgcgcgaa ggcatggatg cggcgcaggc tttggcagcc cctcaagcga ctttgatgac
     3121 gaccatcgcg tcgggcattt tcgcccacaa ccttgaatgg gtctatatct ttaccggcat
     3181 cgcgattggc gcggtgttga ttgccgccga tttggtgttg aaaaaatcat caggcggcaa
     3241 acttgccctg cccgtccttg cggtcggtat gggtatttat ctgccgccgt ccgtcaatat
     3301 gcccatcgtg gcaggcgcgg tgttggcggc ggtgttgaaa cacatcatcg gtaaaaaagc
     3361 ggaaaaccgt gaaggccgtc tgaaaaacgc cgagcgcatc ggaaccttgt tctccgccgg
     3421 tctgattgtc ggtgaaagtc tgattggtgt gattatggcg tttattattg ccttctccgt
     3481 gaccaacggc ggctcggacg cgccgctcgc gttgaatctg caaaactggg atgccgccgc
     3541 ttcttggctg ggcttggcgt tcttcgttac cggaatgatt atttttgcac ggcgcgtact
     3601 gaaggcgggt aggtagcctg tcggagaaaa tgccgtctga aacgttcaga cggcattttt
     3661 tatcgggaaa gtgtaaggcg gagcttttcg gcttgcgccc acgttttgcc ggcaaggtct
     3721 ttgggcgaca ggttcggctc gccttgtagc ggccagtcga tgccgacggt cggatcattc
     3781 caaattagtg agtgttcggc ttcagggttg taatagtctg tgcatttata gacgaactcg
     3841 gcttcatcgc tcagtacata gaagccgtgt gcgaaacctt cgggtaccca cagttggcgt
     3901 ttgttttctg cggacagaat ctcgcctacc catttgccga aagtggggga gtctttacgc
     3961 atatcgacgg ccacgtcgaa tacttcgccg acaactacgc gtacgagttt gccttgtgtg
     4021 ttttcggttt ggtagtgcag gccgcgcaat acgcctttgc cggatttgga gtggttttcc
     4081 tgcacgaagg tgcgttcgca gacttgggtt ttaaaccact cgtcgcggaa ggtttccata
     4141 aaaaagccgc gcgcgtcgcc gaagacttgg ggctcaagca gttttacgtc aggaatggcg
     4201 gtatcaatga tgttcatctt tttatctttc atctaaaggc cgtctgaaaa gtttcagacg
     4261 gcctcaaaca ttattttttc aacaggcgca gcaaatattg gccgtattgg tttttcgcca
     4321 tcgggcgcgc caattcttcc agtttttcat cggaaagcca accgttgcgc ca
//
LOCUS       DAXIFS010000157         4279 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.157, whole genome shotgun sequence.
ACCESSION   DAXIFS010000157 DAXIFS010000000
VERSION     DAXIFS010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4279
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.157"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..540
                     /locus_tag="ACFOCA_001661"
     CDS             <1..540
                     /locus_tag="ACFOCA_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HFC6988343.1"
                     /translation="RLLYQVLMINFVFFIIECSVGIFANSMGLIADSLDMLADSFVYI
                     LALSAIGMTLAYKKRVAFLAGITQIILALFGVIEVIRRFIGAEQLPNYQLMIGTAFLA
                     LIANWLCLYLLSKNQNKEIHIKASMIFTSNDIIINIGVIAAGALTLLTHSSYPDLIIG
                     MIVFVIVLFGARNILKLAK"
     gene            complement(992..1630)
                     /locus_tag="ACFOCA_001662"
     CDS             complement(992..1630)
                     /locus_tag="ACFOCA_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HFC6988344.1"
                     /translation="MFQNFDLGVFLLAVLPVLLAITVREVARGYTARYWGDNTAEQYG
                     RLTLNPLPHIDLVGTIIVPLLTLMFTPFLFGWARPIPIDSRNFRNPRLAWRCVAASGP
                     LSNLAMAVLWGVVLVLTPYVGGAYQMPLAQMANYGILINAILFALNIIPILPWDGGIF
                     IDTFLSAKYSQAFRKIEPYGTWIILLLMLTGVLGAFIAPIVRLVIAFVQMFV"
     gene            1885..2721
                     /locus_tag="ACFOCA_001663"
     CDS             1885..2721
                     /locus_tag="ACFOCA_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HFC6988345.1"
                     /translation="MDKERILTPAVVFSVALLHLAMVALLWQAHKLPVIESGNVIEFV
                     DLGDFGGGDGAPEGAGAPAAPEPQPEPEPPKPVEPPKPVLKPVVTKKADADIQQPKEE
                     PKPEEKPKPEEKPKPEPKPEAKPVPKPAEKPVEKPSEKPAEHPSNASAKADSEQGNGE
                     ETGTKGDGTGRGEGSGKGSGGVKGEHGEGAGSSKGNPLRANGSIPRPAYPTLSMENDE
                     QGTVVLSVLVSPGGHVESVKIVKSSGFSRLDNAARKAAQNGHFQANAWTEFKVPVKFE
                     LN"
     gene            2787..3449
                     /gene="exbB"
                     /locus_tag="ACFOCA_001664"
     CDS             2787..3449
                     /gene="exbB"
                     /locus_tag="ACFOCA_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFC6988346.1"
                     /translation="MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARK
                     GNAAVKRHMRDTLSLNDAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLN
                     EYLVIQIRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMS
                     IAAVAGPIGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQK
                     DS"
     gene            3452..3886
                     /locus_tag="ACFOCA_001665"
     CDS             3452..3886
                     /locus_tag="ACFOCA_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFC6988347.1"
                     /translation="MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSI
                     PLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQN
                     ENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ"
BASE COUNT         1139 a          949 c         1142 g         1049 t
ORIGIN      
        1 agattattat atcaagtgct catgattaac tttgtgtttt ttatcataga gtgttcggtt
       61 ggtatttttg ctaattctat ggggctgatt gctgatagtc tagatatgct ggcggacagc
      121 tttgtctata tattggcgct atcagccatt ggtatgacgc tggcgtataa aaaacgtgtg
      181 gcatttttgg cggggataac gcagataata ttggcgttat ttggggtgat agaagtgatt
      241 aggcgtttta tcggtgctga gcagctgccc aattatcaac tgatgattgg cacggcattt
      301 ttggcattga ttgcaaactg gctgtgctta tatctactga gcaaaaatca aaataaagaa
      361 atccatatca aagccagcat gatttttaca tccaatgaca ttatcatcaa tatcggtgtg
      421 atagcggcgg gagcattgac gttattgact cattctagct atcctgattt aatcattggc
      481 atgattgtct ttgtcattgt actatttggt gctagaaata ttttaaaatt ggcaaaataa
      541 ttcctttcac cagcaaagga gtttttatgc aaatatcggt caaagctacc tacatacgtg
      601 gcagtacttc caaaaacttg attttttaaa atgtggttaa tgcgagtttg tttatctggt
      661 atttgattgg tcaagccttc atccaagcgt ttgacgattt cacgcaaaaa tacccctgat
      721 ttacacacag ggtctaagaa tgtcgccttt ggatttgacc aaatctcaga cggcaataaa
      781 tccagcattt gattggcaag ttttggcgat gtgaaaacct catcattaga cagactggag
      841 tttcttaatc agtgtttcag ttaatgaaag gtattatcat gcaacttggt tctaataatg
      901 atgaaaaaaa taagattaca ctacaggaaa acgcggcagg gcaatatgtc ctgccgcgtt
      961 ttctggagcg tttatgccgt ctgaaagcca gtcagacgaa catctgcaca aacgcaatca
     1021 ccagccgcac aatcggtgca ataaacgcac ccaaaacccc ggtcagcata agcagcagga
     1081 taatccacgt cccataaggt tcgattttgc ggaacgcttg cgaatatttc gccgacagga
     1141 aggtgtcgat gaaaatgccg ccgtcccaag gcaggatggg gatgatgttg agcgcgaaca
     1201 gaatcgcatt gatcagaata ccgtagtttg ccatttgagc caacggcatc tgatacgccc
     1261 cgccgacata cggagtcagc accaaaacca cgccccacag aacagccatc gccagattcg
     1321 acagcgggcc ggacgcggca acgcaacgcc aggcaaggcg cgggttgcgg aagttgcgcg
     1381 aatcgatagg aatcggacgc gcccagccga acaggaaggg cgtgaacatc aaagtaagca
     1441 gcggtacgat gattgtgccg accaaatcga tatggggcag ggggttcagt gtcagcctgc
     1501 cgtattgttc ggcagtgttg tctccccagt agcgcgccgt atagccgcgc gccacctccc
     1561 tgacggtaat ggcgagcagc acgggcagga cggcaagcag aaacacgccc aaatcaaaat
     1621 tttgaaacat ggttttcctt tgaacagatg tggtgtgcag cccgaaacgg ctgacagaca
     1681 gaagcggcaa tatatcatct aacctgattt tattggaata agaaatcaga cggaatcatt
     1741 ttttctgccg gcccgttatc tgatgatttg ctgtaataca gcgtttaaac acggtttgcc
     1801 tgtgaacgga acagacattc atatgaccaa aaattgtaaa aataggttgc aaataggaat
     1861 tgttgctatt attatgcccg aattatggat aaagaacgaa ttttaacccc cgcagtcgtg
     1921 ttttccgtcg cactgctgca tttggcaatg gtggcattgc tctggcaggc gcacaagctg
     1981 cccgtgatag agtcaggaaa tgttatcgaa tttgtcgatt tgggtgattt tggcggaggg
     2041 gacggtgcac ccgaaggcgc aggtgcgcct gctgcgcctg agccgcaacc tgagcctgag
     2101 ccgcccaaac ctgtcgagcc gcccaagccg gttttgaagc cggtggttac gaaaaaggcg
     2161 gatgcggata ttcagcagcc taaggaagag ccgaaacctg aagaaaagcc gaaacccgaa
     2221 gaaaaaccga aaccagagcc taagccggaa gcgaagcctg tcccgaaacc ggcggaaaaa
     2281 ccggtcgaga agccgtctga aaaacctgcc gaacatccca gcaatgcttc tgccaaagca
     2341 gacagcgagc agggtaatgg ggaagaaacc ggtaccaaag gagacggaac ggggcgcgga
     2401 gaaggcagcg gtaaaggtag cggcggtgtc aaaggcgaac acggggaagg agccggcagc
     2461 agcaaaggca atcctttacg cgccaacggc agcattccgc gcccggctta tcccacgctt
     2521 tctatggaga atgacgagca gggtacggtt gttttgagcg ttttggtttc tccgggcggt
     2581 catgtcgagt ccgttaaaat cgtgaaaagc agtggttttt ctcggttgga caatgcggca
     2641 cgcaaggcgg cgcaaaacgg gcattttcaa gccaatgcct ggacggagtt taaagtcccc
     2701 gtcaagtttg aattgaatta ggcggttgcc gcagcggttt gcggcagctt ggatgtttga
     2761 ttggtttttt cagtgttgga atcattatga atttgaaatt agtatttgaa tcgggcgatc
     2821 ccgtcctgat cggtgtgttt gtgttgatgc tgttgatgag tatcgtaacg tggtgtttgg
     2881 ttgtcttgcg ctgcatcaag ctgtatcggg cgcgcaaagg gaatgccgcc gtcaaacggc
     2941 atatgcgcga tactttgtcg ctgaacgacg cggtcgaaaa agtgcgcgcc gtcgatgcgc
     3001 ctttgtccaa actggcgcaa gaggcattgc agtcttaccg caactaccgc cgaaacgaag
     3061 cgtccgaact ggcgcaggct ttgccgttga acgagtattt ggtcattcaa atccgcaaca
     3121 gtatggcgca gattatgcgc cggtttgatt acgggatgac cgcgcttgcc tccatcggcg
     3181 cgaccgcgcc gtttatcggg ctgttcggca cggtttgggg gatttaccac gccctgatca
     3241 atatcgggca aagcgggcag atgagtattg cggcggttgc cggcccgatt ggcgaggcac
     3301 tggtggcgac ggcggcgggt ttgttcgtgg cgattccggc ggtgttggca tacaacttcc
     3361 tcaatcgcgg cacaaaaata ctgacccagg atttggatgc gatggcgcac gatttgcacg
     3421 tccgcctgct taatcaaaag gatagctgat tatggcattt ggttcgatga attccggcga
     3481 cgattctccg atgtccgaca tcaacgttac gccgttggtg gacgtgatgc tggtgttgct
     3541 gattgtgttt atgattacta tgccggtgct gacgcattcc atccctttgg aactgccgac
     3601 cgcgtccgag cagacaaaca agcaggacaa acagcctaaa gaccccctgc gcctgacgat
     3661 tgatgcgaac ggcggctatt atgtcggcgg ggattctgca agcaaagtgg aaatcgggga
     3721 agtggaaagc cgtctgaaag ccgccaagga gcagaatgaa aacgtgattg tggcgattgc
     3781 ggcagacaag gcggtggaat acgattatgt aaacaaagct ttagaagccg cccgtcaggc
     3841 aggaatcacc aaaatcggtt ttgtaaccga aaccaaggcg caataaagtt cgacgcttga
     3901 acgaatgccg tctgaaagtc tttcagacgg catttcttat gtttaatcag ctatatatat
     3961 agttgattaa aacaaaaatg agacgacaga gcgccgtctc catttctgcg cagacgggaa
     4021 tacaaacatc tgatttttct tttattttca aacattactg aaatgggtaa gtctggagtc
     4081 ctgcctgcgc gagaataatg aaaatgtgca tttctaattt ttatagtgga ttaacaaaaa
     4141 tcaggacaag gcaacgaagc cgtagacagt acaaatagta cggaaccgat tcacttggtg
     4201 cttcagcacc ttagagaatc gttctctttg agttaaggcg aggcaacgcc gtactggttt
     4261 ttgttaatcc gctataccc
//
LOCUS       DAXIFS010000158         4251 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.158, whole genome shotgun sequence.
ACCESSION   DAXIFS010000158 DAXIFS010000000
VERSION     DAXIFS010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.158"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(447..872)
                     /locus_tag="ACFOCA_001666"
                     /pseudo
     CDS             complement(447..872)
                     /locus_tag="ACFOCA_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686491.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
     gene            1015..1467
                     /gene="dut"
                     /locus_tag="ACFOCA_001667"
     CDS             1015..1467
                     /gene="dut"
                     /locus_tag="ACFOCA_001667"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HFC6988348.1"
                     /translation="MNIEVEMKVLDERMADFVPAYATEGSAGLDLRACLDEEVVLQPG
                     ETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNR
                     SSEPFAVKPFERIAQMVVVPIVQARFKRVEEFVGSSRGEGGFGSTGLH"
     gene            1543..2730
                     /gene="dapC"
                     /locus_tag="ACFOCA_001668"
     CDS             1543..2730
                     /gene="dapC"
                     /locus_tag="ACFOCA_001668"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HFC6988349.1"
                     /translation="MNTLLKQLKPYPFARLREAMQGISAPEGLEAVPLHIGEPKHPTP
                     KVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTLNPDTEILPVLGSREA
                     LFSFVQTVLNPVSDGLKPVIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSI
                     SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK
                     PLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSA
                     MSIPVQRASIAAWDDEQHVIDNRRMYQEKFERVIPILQQVFDVKLPDASFYIWLKVPD
                     GDDLALARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAETIVF
                     LYR"
     gene            2992..3771
                     /gene="yaaA"
                     /locus_tag="ACFOCA_001669"
     CDS             2992..3771
                     /gene="yaaA"
                     /locus_tag="ACFOCA_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HFC6988350.1"
                     /translation="MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQ
                     QIAELMHVSDKIALLNAQRNAEWHTPFTPENAKQAVFMFNGDVYEGMDANTLDIGQIR
                     YLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLA
                     QAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRY
                     AVEHHITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK"
     gene            3854..3944
                     /locus_tag="ACFOCA_001670"
     tRNA            3854..3944
                     /locus_tag="ACFOCA_001670"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3888..3890,aa:Ser,seq:tga)
     gene            4048..4137
                     /locus_tag="ACFOCA_001671"
     tRNA            4048..4137
                     /locus_tag="ACFOCA_001671"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4082..4084,aa:Ser,seq:cga)
BASE COUNT         1108 a          992 c         1037 g         1114 t
ORIGIN      
        1 cgcgggaatg acggatttta ggttggggtc atttattgga aaaagcagaa accgctccgc
       61 cgtcattccc acgaaagtgg gaatccagtt ttttgagttt cagtcattcc cgataaattg
      121 ccttagcatt gaatgtctgg attcccgcct gagcgggaat gacgaatcca tccatacgga
      181 aacctgcacc acgtcattcc cacgaaagtg ggaatctagt tttttgagtt tcagtcattt
      241 tcaataaatt gccttagcat tgaatgtcta gattcccgcc tgcgcgggaa tgacgattca
      301 tatagtggat taacaaaaat caggacaagg cggcgaagct gcagacagta cagatagtac
      361 ggaatcgatt cacttggtgc ttcagcacct tagagaatcg ttctctttga gctaaggcga
      421 ggcaacgctg tactggtttt tgttaatcca ctataaaaag gcatattgaa tgcgggcaaa
      481 ccggctgctt tccgtttttg gatttcggag aatgccatcg cccagctttc atcacacata
      541 aaaaacagtg cgggcacggc ttttttcagc ggtattcctt tcaggtgcgg ggcaagcgcc
      601 gcccccatca ggatatgccg agaattaatc ataaaggtta cggtggcgat aagcagtatc
      661 ggcagaggtt ccgcccacag gttgaccgtg gcaaactcgg agccgccggc gaagttcata
      721 ctggtcatca acaacatttc cagccagctc atgccttttt gtccgccctg cataccgagt
      781 attaatgccc aaggcaaaag cccaatcagc atgggcgaac tttctttgat gccgcgtata
      841 aattcgttac ggggtgaact tgtatgtgtc atgttaatat tgatatgtaa gaaggtcgag
      901 cattatacac agacggtgta tttcagaaca aaacctattt gccgtgtttc agcgtaaaca
      961 cggcttgtgt ataatctccc atctttgaaa ctggccgtat gcaggagcaa gacgatgaat
     1021 attgaagtag aaatgaaagt gttggacgag aggatggcgg attttgtccc tgcctatgca
     1081 acggagggtt ctgccggttt ggacttgcgc gcctgtttgg atgaggaagt cgttttgcag
     1141 ccgggtgaaa cgtttcttgt gccgacaggt ttggcaattt atttggccaa tcctgcatat
     1201 gccgccgttt tgctgccccg ttccggattg gggcataaac acggtattgt cttgggtaac
     1261 ttggtcggtt tgattgactc cgattatcaa ggggaattga aggtgtcgtt atggaacaga
     1321 agcagcgagc catttgccgt caagccgttc gagcgtatcg cgcagatggt tgtcgtgcca
     1381 atcgtgcagg cgcgtttcaa acgtgtcgag gaatttgtcg gaagcagccg gggtgagggc
     1441 ggcttcggca gtacgggttt gcattgaata taaaatgccg tctgaagggc acgtcaggtt
     1501 cagacggcat atcttccgat ataccgacaa ccggagaaaa tcatgaatac cttactcaag
     1561 cagcttaaac cctatccctt tgcccgactg cgtgaagcga tgcagggcat ttccgccccc
     1621 gaaggtctgg aagccgtccc actgcatatc ggcgaaccga aacatccaac accgaaagtc
     1681 attacggatg cgctgaccgc ctcattgcac gagttggaaa aatatccgct gacggccggt
     1741 ttgcctgaac tgcgtcaggc gtgtgcgaac tggttaaaac gccgttatga cggcttgacg
     1801 ctgaatcccg acaccgaaat tctgccggtt ttgggaagta gggaggcgtt gttttctttt
     1861 gtccaaaccg tgttgaaccc tgtttcagac ggcctcaaac ccgtaatcgt cagcccgaat
     1921 cccttttatc agatttatga aggtgcgaca cttttgggcg gcggtgaaat ccattttgct
     1981 aattgccccg cgccgtcttt caaccccgat tggcgcagta tttccgaaga ggtttggaaa
     2041 cgcaccaaac tggtgttcgt ctgctcaccc aacaacccca gcggcagcgt gctggatttg
     2101 gacggctgga aagaagtttt tgatttacag gataaatatg gtttcattat tgcctcggat
     2161 gaatgctatt ccgaaatcta tttcgacggc aacaaacctt tgggctgcct gcaagccgct
     2221 gcacagttgg gtcgaagcag gcaaaaactg cttatgttca ccagtttgtc caagcgttcc
     2281 aacgttccgg gcctgcgttc cggttttgtc gccggcgatg ccgaactgct taaaaacttt
     2341 ctgctttaca gaacctatca cggcagtgca atgagtattc ccgtgcagcg cgcaagcatt
     2401 gccgcttggg atgatgaaca gcacgttatc gacaaccgcc gtatgtatca ggaaaaattt
     2461 gagcgcgtta ttcccatttt gcaacaggta tttgacgtta aattaccgga tgcctcgttt
     2521 tacatctggt tgaaagtccc tgatggcgac gatttggcac ttgcacgcaa tttatggcaa
     2581 aaagcggcta tccaagtatt gcccggacgt tttttggcgc gggataccga acagggcaat
     2641 cccggggaag gttatgtgcg tatcgctttg gttgccgatg tcgcaacttg tgtcaaagct
     2701 gcggaaacca ttgttttcct atatcggtaa ggaatcggaa atgccgtctg aacttttgtt
     2761 cagacggcat ttttcaatat tttacggttg aatttgctat aacggtattt atagtggatt
     2821 aacaaaaatc aggacaaggc gacgaagccg aagacagtac agatagtacg gcaaggcgag
     2881 gcaacgctgt actggtttaa atttaatcca ctatacttca cttttaatcg gcttgcccgc
     2941 aaacacgttt aaacttaaaa tccccgtgtt tgacacaata ccgagcagat tatgtttttt
     3001 gtcctttccc ctgcgaagaa ccttaatgaa aaagaccctg cccctgtcag cgagtttacc
     3061 caacccgacc tgctggcaga gtccgacatt ctaatgcagc agttgcgcga gcttgcgccg
     3121 caacagattg ccgaactgat gcacgtttcc gacaaaattg ccctcttaaa cgcgcagcgc
     3181 aatgcagaat ggcacacgcc gtttacgccg gaaaacgcca aacaggcggt ctttatgttc
     3241 aacggcgatg tttacgaagg tatggatgca aacacattgg atattggaca gatacgctat
     3301 ctgcaaaacc atgtccgcct gctgtccggt ctgtacggtc ttcttcgccc gttagacctg
     3361 atacagccct accgtttgga aatggggacg gcatttgcca atttgcgcgg caagaatttg
     3421 tatgagtttt ggggcgacat cattaccaac cttttaaatg acacgcttgc ccaagcaggc
     3481 agcaatacgc ttgtcaacct tgcctcacag gaatatttca agtccgtcaa cacgaaaaaa
     3541 cttcgggcgc ggctgattac cccgatattt aaagacgaaa aaaacggtaa atataaaatc
     3601 atcagtttct atgccaagcg cgcgcgcgga ttaatggtgc gctatgcggt agaacatcat
     3661 attaccgacc ctgaaatgct gaaaaatttt aattacgaag gctacgcatt caatgacgcg
     3721 gcttcaaatg aaagcgaatg ggtttttatg cgttcggaac aaataaaatg aaaacaataa
     3781 attaagtatt ttccgaaaaa agtgcttggc aaaatgtata aacttcatta ttattcctac
     3841 tcttcaagaa gacggaagcg tggcagagcg gtttaatgca acggtcttga aaaccgtcga
     3901 gggttgatag ccctccgtga gttcgaatct caccgcttcc gccaatcctt gaggtcaaaa
     3961 accaaataaa aatgaagtag cataaagcat cggcattttt atttggtttt acttcatcgt
     4021 gtttcctttt aggttgaaac atctttcgga aacctggcag agaggctgaa tgcagcggac
     4081 tcgaaatccg ctgagggtgc aaatcctccg tgggttcgaa tcccaccgtt tccgccagaa
     4141 aacaaaaccg ccctgattca gggcggttct tttttgttca agttgtgtca attaccatat
     4201 aaaaatcatc ggtttgccct atcaaaacgc gtcaaagtaa atcatttgca a
//
LOCUS       DAXIFS010000159         4204 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.159, whole genome shotgun sequence.
ACCESSION   DAXIFS010000159 DAXIFS010000000
VERSION     DAXIFS010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4204
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.159"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            341..1135
                     /locus_tag="ACFOCA_001672"
     CDS             341..1135
                     /locus_tag="ACFOCA_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFC6988351.1"
                     /translation="MTTILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQ
                     TGGDFMQHHLHQVVAISCCMRWGQDKVHVGTIGEMDDGEEVVIAKFFELIEKHTPQLV
                     SWNGGGFDLPVLHYRSLLHGINAARYWDMGDGDFGDSRDFKWNNYISRYHQRHCDLMD
                     LLALYQPRANVPLDDMAKLCGFPGKLGMDGSKVWDAFHAGRLKEIRNYCETDAVNTYL
                     MYLRFCLVSGRFDADEYEMEIKRIRNYLSAQTEDKPHWAEFVQAWK"
     gene            1346..3949
                     /gene="pepN"
                     /locus_tag="ACFOCA_001673"
     CDS             1346..3949
                     /gene="pepN"
                     /locus_tag="ACFOCA_001673"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HFC6988352.1"
                     /translation="MSKTVRYLKDYQTPAYRILETDLHFDIAEPQTVVKSRLTVEPQR
                     VGEPLVLDGSAKLLSVKINGAAADYMLEGETLTIADVPSERFTVEVETEILPAENKSL
                     MGLYASAGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDG
                     GEYSDGRHWVKWEDPFAKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTAEADKPK
                     VGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADS
                     RTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRA
                     VRRIENIRLLRQHQFPEDAGPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLG
                     EEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLDQFALWYSQAGTPVLEAESRL
                     KNNIFELTIKQTVPPTPDMADKQPMMIPVKIGLLNRNGEAAAFDYQGKRATEAVLLLT
                     EAEQIFLLEGVTEAVFPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTL
                     YRRAVAANLAALSDGIELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGA
                     ENIDPLRYHQAREALLDTLAVRFLPKWHELNRQAAKQENQSYEYSPEAAGWRTLRNVC
                     RAFVLRADPAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKFSDD
                     ALVMDKYFALIGSSRRSDTLQQVQTALQHPKFSLENPNKARSLIGSFSRNVPHFHAED
                     GSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSK
                     DVGEIVGKILD"
BASE COUNT         1039 a         1130 c         1137 g          898 t
ORIGIN      
        1 atgttttgac atttatattg taaaaaatgc ttggcaaagc gtagaaaatg gcgtacattt
       61 cgctacatgg aattacacga caggcaggaa atgctgtttg aaaggatttt ccggtcagtc
      121 ttgcgattgg tcggggtttc atcggaaacg gtgaaacaaa agtttgccgg cgtagagttg
      181 agctacgcgg gtaaagccgc aggcgaaagc ctgtattgtt tgtgaagcgt aaatctctga
      241 tttgaggtat tggggcaatc ctgtgggggg ttgcctcttt ttttatcggc cttttaatga
      301 cacaataggc gcaagtctgt tttaaataca aggtgctgtc atgaccacga ttttggcttt
      361 cgatattgaa accgtacctg atgtccaggg tatccgaaca ttgtacgagc tgccgtcctc
      421 gctgcccgac gatgaagtgg tgctgtttgc ccagcaaaaa cgccgtgctc agacgggcgg
      481 cgattttatg cagcatcatc ttcatcaggt tgtggcgatt tcgtgctgca tgcgttgggg
      541 gcaggataaa gtacatgtcg gcaccatcgg cgagatggat gacggcgagg aagtggtcat
      601 tgctaaattt ttcgaattga ttgaaaaaca tacgccgcaa ctggtcagtt ggaacggcgg
      661 cggtttcgac ctgccggttc tgcattaccg ttcgctgcta cacggcatca acgccgcgcg
      721 ctattgggat atgggcgacg gcgatttcgg cgacagccgc gatttcaagt ggaacaacta
      781 catcagccgt taccaccaac gccactgcga tttgatggat ttgctcgcac tttatcagcc
      841 gagggcaaac gtgccgctgg acgatatggc gaaactgtgc ggttttccgg gcaagctggg
      901 tatggacggc agcaaggtgt gggatgcgtt ccacgcgggc aggctgaaag aaatccgcaa
      961 ttattgcgaa accgatgccg tgaatacgta tttgatgtat ctgcgttttt gtctggtcag
     1021 cggcagattc gacgcggacg aatacgaaat ggaaatcaag cggatcagaa actatctttc
     1081 cgcccaaaca gaagacaaac cgcattgggc agaatttgtc caagcgtgga aatagaaaat
     1141 ctgctgtccg aaggcggtac gcttgtgccg ccgtttcggt tcagacggca tatggtggat
     1201 taaattcaaa ccggtacagc ccgtactatc agtactgtct gcggcttcgt cgccttgtcc
     1261 tgatttttgt taatccgctt taaaagctgt atccgtgccg tctgaagcct tttccagtca
     1321 aaccaaacaa tattgaaaga aaaaaatgag caaaaccgtc cgttatctga aagattacca
     1381 aacgcctgcc taccgcattc tcgaaaccga cctgcatttc gatattgccg aaccgcaaac
     1441 cgtcgtgaag tcgcgtttga cggttgagcc gcagagggta ggggagccgc tggtgttgga
     1501 cggttcggcg aaactcttgt ccgtcaaaat caacggcgcg gcggcggatt atatgttgga
     1561 aggcgagacg ctgacgattg cagacgtgcc gtccgaacgc ttcaccgtcg aagtggaaac
     1621 cgaaatcctg ccggcggaaa acaaatcgct gatggggctg tatgcgtccg ccggtaacct
     1681 gtttacccag tgcgagccgg agggcttccg caaaatcacg ttctatatcg accgtccgga
     1741 tgtcatgtcc aagttcacga ccaccatcgt cgcggacaaa aaacgctatc ccgttttgct
     1801 ctccaacggc aacaaaatcg acggcggcga gtattcagac ggccgccatt gggtgaaatg
     1861 ggaagacccg tttgccaaac cgagttatct gtttgctttg gtcgcgggcg atttggcggt
     1921 cacggaagac tatttcacca ccatgagcgg cagaaacgtc aaaatcgagt tttacactgc
     1981 cgaggcggac aagcctaagg tcggctttgc cgtggaatcc ttgaaaaacg cgatgaagtg
     2041 ggacgaaacg cgcttcggtt tggaatacga cttggatatt ttcatggtcg tcgccgtggg
     2101 cgatttcaat atgggtgcga tggaaaacaa ggggctgaac atttttaata ccaagttcgt
     2161 ccttgccgac agccgtaccg ccaccgatac cgattttgaa ggcatcgaat ccgtggtcgg
     2221 acacgagtat ttccacaact ggacaggcaa ccgcgttacc tgccgcgatt ggttccagct
     2281 ttcgctgaaa gaagggttga ccgtgttccg cgaccaagaa ttttccggcg accgcgccag
     2341 ccgcgccgtg cgccgcatcg agaacatccg cctgctgcgc cagcaccagt tccccgaaga
     2401 cgcaggcccg accgcccatc cggtgcgccc cgccagctat gaggagatga acaatttcta
     2461 caccatgacc gtttatgaaa aaggcgcgga agtggtgcgg atgtatcaca ccttgctcgg
     2521 cgaagagggc ttccaaaaag gcatgaagct ctatttccaa cgacacgacg ggcaggccgt
     2581 gacctgcgac gatttccgcg cggcgatggc ggacgcgaac ggcatcaatc tcgaccagtt
     2641 cgccttgtgg tacagccagg cgggcacgcc cgttttggaa gcggaaagcc gtctgaaaaa
     2701 caatattttc gagttgacca ttaaacaaac cgtgccgccc acgcccgata tggcggacaa
     2761 gcagccgatg atgattcccg tcaaaatcgg gctgctgaac cgcaacggcg aagcggcggc
     2821 attcgattat cagggcaaac gcgcgaccga agccgtattg ctgctgaccg aagccgaaca
     2881 gatcttcctg ctcgaaggcg taaccgaagc cgtctttccc tcgctgctgc gcgggttcag
     2941 cgcgccggtg catctgaact atccgtacag cgacgacgac ctgctgcttc tgctcgccca
     3001 tgacagcgac gccttcacgc gctgggaagc cgcacaaacg ctctaccgcc gtgccgtcgc
     3061 cgccaacctt gccgcacttt cagacggtat tgaactgccg aaacacgaaa aactgcttgc
     3121 cgccgtcgaa aaagtcattt cagacgacct cttagacaac gccttcaaag ccctgctttt
     3181 gggcgtgccg tctgaagccg agctgtggga cggcgcggaa aacatcgacc cgctgcgcta
     3241 ccatcaggcg cgcgaagcct tgttggacac gcttgccgtc cgcttcctgc cgaaatggca
     3301 cgaattgaac cgtcaggcgg cgaagcagga aaaccaaagc tacgagtaca gccccgaagc
     3361 tgccggctgg cgcacgctgc gcaacgtctg ccgcgccttc gtcctgcgcg ccgaccccgc
     3421 gcacatcgaa accgttgccg aaaaatacgg cgaaatggcg caaaacatga cccacgaatg
     3481 gggcatcctg tccgccgtca acggcaacga aagcgatacg cgcaaccgcc tgctggcgca
     3541 gtttgccgac aagttttcag acgacgcgct ggtgatggac aaatatttcg cccttatcgg
     3601 ctcaagccgc cgcagcgaca ccctgcaaca ggttcaaacc gccttgcagc atccgaaatt
     3661 cagcctcgaa aaccccaaca aagcccgttc gctcatcggc agcttcagcc gcaacgtccc
     3721 gcatttccac gcagaagacg gcagcggcta ccgcttcatc gccgacaaag tcatcgaaat
     3781 cgaccgcttc aacccgcagg tcgccgcccg tttggtgcag gcgttcaacc tctgcaacaa
     3841 gctcgagccg caccgcaaaa acttggtgaa acaagcattg cagcgcattc gggcgcagga
     3901 aggattgtcg aaagacgtgg gcgaaatcgt cggcaaaatt ttggattgag gccgtcaaac
     3961 agaaaaacaa tgccgtctga tatagttaca cacacgtttt atcatcactt ccccatcgtt
     4021 ttattacgca atggcaaaac ggccgcaaag tcatattaat tatagtggat taacaaaaat
     4081 caggacaagg cgacgaagcc gcagacagta cagatagtac ggtaaggcga ggcaacgctg
     4141 tactggtttt tgtgaatcca ctatattgct agaagtgcac cgattaaggt taattaaaat
     4201 acga
//
LOCUS       DAXIFS010000160         4172 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.160, whole genome shotgun sequence.
ACCESSION   DAXIFS010000160 DAXIFS010000000
VERSION     DAXIFS010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.160"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..529)
                     /locus_tag="ACFOCA_001674"
     CDS             complement(<1..529)
                     /locus_tag="ACFOCA_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6988353.1"
                     /translation="MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGE
                     WVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDR
                     LNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGA
                     TLEISTEKLFSKNARS"
     gene            complement(936..1103)
                     /locus_tag="ACFOCA_001675"
     CDS             complement(936..1103)
                     /locus_tag="ACFOCA_001675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988354.1"
                     /translation="MADFDWIIENNRIKPTELSIYKGRLKNKKQPAQPVFPAEPLIPT
                     AAPSSLPVGKR"
     gene            complement(1107..1496)
                     /locus_tag="ACFOCA_001676"
     CDS             complement(1107..1496)
                     /locus_tag="ACFOCA_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HFC6988355.1"
                     /translation="MSTHEKLLTADNPVLHQRAKAMRQEMSEAEAKLWQHLRAGRLNG
                     YKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWN
                     HEILQQTNDVLTEILLVLQELEKQAAR"
     gene            complement(2088..2213)
                     /locus_tag="ACFOCA_001677"
                     /pseudo
     CDS             complement(2088..2213)
                     /locus_tag="ACFOCA_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            complement(2259..3392)
                     /gene="carA"
                     /locus_tag="ACFOCA_001678"
     CDS             complement(2259..3392)
                     /gene="carA"
                     /locus_tag="ACFOCA_001678"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFC6988356.1"
                     /translation="MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILT
                     DPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYL
                     VRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAK
                     EVSCTETYEWTEGEWELGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPA
                     QTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAI
                     GAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTL
                     QGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA"
BASE COUNT          951 a         1034 c         1058 g         1129 t
ORIGIN      
        1 cagatctagc attttttgaa aacaattttt cagttgatat ttccaatgtt gctccgctat
       61 caaataaatc atcaattact aaaatattct tattggatag atctatattg tcaattgtga
      121 tggaattatt cagtatttct agtttttctg atttttcttc aatatttttg agtggtgtgt
      181 gtgagctaga ttttcttaaa ataggagaat atggaatatt caagcgatca cttagttctt
      241 tggcaattaa ttgaactggt tgattaatac gctctgttgt aaaaggggcg ggaacaatta
      301 aatttataga ttctaaacca ctaaattttt gtaaaatata gtctaccagc aaagaaacat
      361 tttgggtttg attacgatat tttaattgat aaacccattc tccaatcaca cttctcttgc
      421 tatcaaagtg aggatgccct aattcatcat aacctaacaa aatacttttt tgcatatgat
      481 ggtctaaagc aaatcctttt gtccagttac catttagttc tatcgccatt tcattgactc
      541 cttgtcaaaa ttaagtataa cgagcaatcc tagcaagccg tagcccgcat gtagggtatg
      601 tgcggtacgc acgcacgcgt tcttcatttt ccctgtaacc ccaacccacc gcatgcgcgc
      661 cttgcggcac acactctgcc gacggattca aaggtcgtct gaaaaaacgc tcgcggcgtt
      721 tgttacatct gccttgcgat aaaggctgcc tgaaaaattc ccactgttga tatttcgggc
      781 attctttctc aaaccgcctg caaccgcaaa atctgctgaa acctactccc tcccccgtgg
      841 gggagggctg gggagagggc attctccgaa tttcggcaac ctttcctaac actctaaccg
      901 ccaagacaca agccttgcgg cttgttgccc tctctctaac gctttcccac agggagagag
      961 gacggggcgg ctgttggaat taagggttct gcaggaaaaa caggttgtgc gggctgtttt
     1021 ttgtttttca gacggccttt ataaatgctc aattcagtcg gctttatcct attattttca
     1081 ataatccaat caaaatcagc catctgctat cgtgcagctt gcttttccaa ttcttgcaac
     1141 acgagcagga tttctgtcag cacatcgttt gtctgctgta aaatctcgtg attccaaaac
     1201 cgcagtacgg taaagcccaa gctgttgaga tatgccgtcc gcgcgtggtc gtatgcggct
     1261 tgttctgtgt gctgccctcc gtctgcttcg acaatcaact tgggcgttac gcacataaaa
     1321 tcaacaatat agtttcccat cggctgctgg cggcggaatt tatagccgtt cagacggcct
     1381 gcccgcaggt gctgccacaa ttttgcttcc gcctcgctca tttcttggcg catggctttg
     1441 gcgcgttgat gcaggacggg gttgtcggcg gttaaaagtt tctcgtgcgt gctcattctg
     1501 ttgtcgggtt actgtttgtg taagccttac agtttgttgc cctctctctg actctctccc
     1561 atgggagaga ggacgtggtg gcggttggga ttaagggttc tgcaaggaaa acaggttgtg
     1621 caggctgctt tttatttttc agatgacctg aaacaacagc tgcaaatcta agttgccttt
     1681 caaatcgcct gcaaccgcaa aatctgctgc aaccttctcc ctcccccgtg ggggagggct
     1741 ggggagaggg cattcttcga atttcggcaa ccttccccaa caccctaacc gcccaaacac
     1801 aagccttgct gtttgttgcc ctctctctaa cgctttccca cagggagaca ggacggggcg
     1861 gctgtagtga ttaagggttt tgcaaggaaa acaaggaaaa caagttgtac aggctgtttt
     1921 ttatttttca agcgacctga aatcaacgct tgtaaatcca agtcgctttt caaactgcct
     1981 gcaaccgcaa aatctgctgc aacctacccc ctcccccgtg ggggagggct ggggagaggg
     2041 cattttccaa gttgcggcaa tctttcccaa atcccttagt cttctaaaat acaagcctta
     2101 cggttgttgc caaatgaaac ttcttccata cccaaaactt gcgtgtaaaa cgcaatggtt
     2161 cggtcaatgt cggcaacggt cagtaccaga tggtcgagtg cgctaatctt catttcccgc
     2221 tttctttttc aggcggcggc agtgccgtct gaaagccatt atgcccgttt tgccgctttc
     2281 atattgccaa tgaatttgtc aaacaaatag ccgacatctt gcggaccggg gctggcttcg
     2341 gggtggcctt ggaagcagaa cacaggtttg tcggtcagct cgatgccttg caaagtgttg
     2401 tcaaacaagg atttgtgggt aatgcgtgcg ttagcgggca gggtgtcggc atcaacggca
     2461 aaaccgtggt tttggctggt gatgacgact ttgccgctgt ccaaatcttg cacagggtgg
     2521 ttcgcaccgt ggtggctgaa gcgcattttc agggttttcg cgccgatagc gaggctgatg
     2581 agctggtgtc ccaagcagat gccgaaaatc ggtttgccgc tttccatcag tttttgcacg
     2641 gcttcgatgg cgtaggtgca aggctcgggg tcgccggggc cgttggacag gaacacgccg
     2701 tcgggattga gtgccaacac gtcttgtgcg ctcgtttggg cggggacgac ggtcaggcgg
     2761 cagccgcgcg aggcgagcat acgcaggatg ttggttttca cgccgaaatc gtaggcgacg
     2821 acgtggtaag gctgttcgtc aggggtaacg aaacccttgc ccaattccca ttcgccttcc
     2881 gtccattcgt aagtttccgt gcaggaaact tcttttgcca agtctttgcc gaccatactg
     2941 ccgaacgcgg cgatgagttc ttgcgctttt tcaaccgtag catccgcgcc ggtcaagatc
     3001 gcgccgcctt gcgcgccttt ttcacgcaac agcgtggtca ggcggcgggt gtcgatgtcg
     3061 gcgatggcga cggttttgtt gcgtaccaaa tagtcgtgca ggctttcgga ggcacggaag
     3121 ttgctgtgca agagcggcag gtcgcggata atcaggccgg cggcgtaaac gctgcggctt
     3181 tcttcatctt cggcgttggt gccggtgttg ccgatgtggg ggtaggtgag ggtaacgatt
     3241 tgtttgcagt aggacgggtc ggtcaggatt tcctgatagc cggtcatcga agtattgaac
     3301 acgacttcgc cggaagtcga accttcgtaa ccgattgatg tgccgtggaa tacgctgccg
     3361 tcagcgagga cgaggagggc gggggtgctc atgatgggaa tcctgttttt aataaaattc
     3421 ttgacaatgc cgtctgaagg gacttcggca gggggcatcc ggtcggaaaa atccggtcaa
     3481 aaaaaaacac gccgcgcaag atagacgcgt aacgtgcttt tcgggcaagt gcctataccc
     3541 tgaaagcagc atattttaag acgaaacata cccgatttca agcgcaaacg cggcaggcgg
     3601 gctgatatgt tcgcgcgaaa acggaaatcc gtggcgtaaa accgcccgct ctgcgcccac
     3661 tatgcccgtt acgcatttcc ccacgtccgt ccggcgaaac tatgggaata cccgaatcgt
     3721 cattcccacg aaagtgggaa tccagttttt tgagtttcag tcatttccga taaattgcct
     3781 tagcattgaa tgtctagatt cccgcctgcg cgggaatgac gcgtttcatt tgcccccatc
     3841 ccgaaaacgc aaacaatacc gtctgaaagc tctgtaggga gggcttcagc ccaccgattc
     3901 catcaatccc acatttccgc cgttttcacc gaatccgccc cttttcacaa tccagtccta
     3961 cgcaactgaa ccgtcattcc cgcgcaggcg ggaatccgga cttgtcggca cggaaactta
     4021 tcgggtacaa cggtttcttg agattccgca tcctagattc ccgcctgcgc gggaatgacg
     4081 gcgcataagt ttctgtgttg atttgagtct atgggaacgg tgtaggattg gtggaatcgt
     4141 tggaatcggt gggctgaagc ccaccctata ac
//
LOCUS       DAXIFS010000161         4158 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.161, whole genome shotgun sequence.
ACCESSION   DAXIFS010000161 DAXIFS010000000
VERSION     DAXIFS010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.161"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..315)
                     /locus_tag="ACFOCA_001679"
     CDS             complement(<1..315)
                     /locus_tag="ACFOCA_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium:proton antiporter"
                     /protein_id="HFC6988357.1"
                     /translation="MDWMGSLFLPGGALLFLSVVSTTLPARLGMPLLLVSPAGVLDGA
                     AEALAIAAFLMLVARPPAVFGGLWKFNYSLREKAYSRIEMQSDTVLQAGIWRGTSCPT
                     ARS"
     gene            511..1237
                     /locus_tag="ACFOCA_001680"
                     /pseudo
     CDS             511..1237
                     /locus_tag="ACFOCA_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
     gene            1306..2844
                     /gene="lnt"
                     /locus_tag="ACFOCA_001681"
     CDS             1306..2844
                     /gene="lnt"
                     /locus_tag="ACFOCA_001681"
                     /EC_number="2.3.1.269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFC6988358.1"
                     /translation="MVSKLDKYWQHPALYWPLLILFAAATPFTFAPYYHFWLMPLIFG
                     AFVRLIELRPRFAVSSAYLFGLTAYTTQFYWIHTALHDVSGLPDLYAVPLTFLLPAYL
                     ALYPALCFWLWKKFTLPRGIKIGLVLPILWTLTEFARERFLTGFGWGAIGYSQITPDS
                     PLAGFAPLGGIHMVTLATAFLGVWLVLASDNTARSGKRLLPIILIAALLAAGYTARQT
                     DFTRPDGSRSTVALLQGNIDQTLKWREDQVIPTIQKYYEQVGKTTADIVILPETAIPV
                     MRQNLPENILAKFAEQAQNNGSALAVGISQYTSDGNGYENAVINLTGYQENNQDGIPY
                     YAKNHLVPFGEYKPLPFLTTPLYKMMNMPLSDFRKGGGKQSALLMKNQKIAFNICYED
                     GFGDELIAAAKDATLLANASNMAWYGKSNAMYQHLQQSQARAMELGRYMVRATNTGAT
                     AIISPKGNIIAQAQPDTETVLEGHIKGYVGETPYMKTGSSWWLMGILTLAALILFIFR
                     NKEH"
     gene            3108..3971
                     /gene="rpoH"
                     /locus_tag="ACFOCA_001682"
     CDS             3108..3971
                     /gene="rpoH"
                     /locus_tag="ACFOCA_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HFC6988359.1"
                     /translation="MNNAFALPAIQSGNGSLEQYIHTVNSIPMLSQEEETRLAERRIK
                     GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLF
                     SFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADD
                     LGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYAL
                     QTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKL
                     RGFLTEEAEAV"
BASE COUNT         1005 a         1291 c          958 g          904 t
ORIGIN      
        1 cgaccttgcc gtcgggcagg atgtaccacg ccaaatcccc gcctgaagca cggtgtcgga
       61 ctgcatttcg attcggctat acgccttttc acgcaggctg taattgaatt tccacaaacc
      121 gccgaacact gccggcggac gcgcgaccag catcaggaac gccgcaatcg ccaaggcttc
      181 cgccgccccg tccaacacgc cggcgggaga aaccagcagc aaaggcattc ccaaacgtgc
      241 gggtaaagtg gtcgaaacca cgctcagaaa caacagtgcg ccacccggca ggaacagact
      301 gcccatccaa tccacgctaa cgattctccc ttaaaattca ttaaattaaa atcgaaagac
      361 tgtaacacgg cattttcttt tcacgaaact ttacttcacg tccgccacag cgttcagacg
      421 gcattttcct gtttcatgcc gcctgaaacc gcccaaatcc gcgttctcct atataatgtc
      481 ggactttgcg ccgcatttca ggattcttta atggcatttg cctcactatt taccctgccg
      541 gacgacatca ccgccgtttt ggacgatgtt gccctgatga ccaaagccgc cgcaaagaaa
      601 accgccggcg tggtcggcga cgatttggca cccaatgcca accgtgttac gggcgtatcg
      661 gcagaacgcg agttgccgat tgtttggtcg atggcgaaag gttctttttc caacaagccg
      721 gttttggtgc ctgcggccct gctgctttcc gccttcctgc cgcaactcat tacgccgctt
      781 ttgacggcag gcggcattta tctgtgcttt gaaggcgtag aaaagctgct gcacaagttt
      841 ctgcaccgac atgacgcgca tgctcgtaat ggcggcaatc ggcatcggca tgactgtttt
      901 ggtgtacgga atcgttgccg tcatcgtcaa actcgacgac ttaggcatgc tgctgatgcg
      961 ccgcccacaa accttttcgc gcagtttggg gcaaatgctg actgccttta tgccttgctt
     1021 tatgcgcggt ttgagcgtgg tcggcacgct tgccatgttt cttatcggcg gcgtactggt
     1081 cgcccacaac ctcggccttc tgcacgattt cctgcacgcg caacactggg acgctggctg
     1141 ggcggagtac ttcgccaacc tcgttgtcgg gctgctttcc ggttcgattg cctgcgcccc
     1201 cgccttgccg ctgatgaatc gtttcggcag gcattgattt ctttttcaaa taccgatgcc
     1261 gtttgaaaga tgttcagacg gtatcttccg aacagacaga tgaatatggt ttccaaactg
     1321 gacaaatact ggcagcaccc cgccctctac tggcctttgc tcatcctttt tgccgccgcc
     1381 acccccttta ccttcgcacc ctactaccac ttttggctga tgcccttgat tttcggtgcc
     1441 ttcgtccgcc tcatcgaact gcgtccgcgt tttgctgtct cttccgccta cctgttcggc
     1501 ctgaccgcat acacgacaca gttctactgg atacacaccg ccctgcacga cgtttccggc
     1561 ctgcccgacc tctatgccgt accgctgacc ttcctactcc ccgcctacct tgccctttat
     1621 ccggcactgt gtttctggct gtggaaaaaa tttaccctgc ctcggggcat aaaaatcggt
     1681 ttggtactgc ccatcctgtg gacactgacc gagtttgccc gcgaacgttt cctgaccgga
     1741 ttcggctggg gcgcaatcgg ctactcccaa atcaccccgg acagcccgct cgccggcttt
     1801 gccccattgg gcggcatcca catggttaca ctggcaaccg cctttctcgg tgtctggctg
     1861 gttttggcga gtgataacac cgcacgttcg ggcaaacgcc tgcttccaat tatcctgatt
     1921 gccgccctgc ttgccgcagg ctacaccgcc cgacaaaccg acttcacccg ccccgacggc
     1981 agccgcagca ccgtcgccct gcttcaaggc aacatcgacc aaaccctcaa atggcgtgaa
     2041 gaccaagtca tcccgaccat acagaaatat tacgaacagg tcggcaaaac cactgccgac
     2101 atcgtcatcc tgcccgaaac cgccatcccc gttatgcgcc aaaacctgcc ggaaaacata
     2161 ctggcaaaat ttgccgaaca ggcgcaaaac aacggcagcg cgctcgccgt cggcatcagc
     2221 caatacactt cggacggcaa cggttacgaa aacgccgtca tcaacctgac cggttatcag
     2281 gaaaacaatc aggacggcat cccctactac gccaaaaacc acctcgtccc cttcggcgaa
     2341 tacaaaccgc tgcccttcct gaccacgccg ctttacaaaa tgatgaatat gcccctttcc
     2401 gacttccgca aaggcggcgg taagcaatcc gccctgctga tgaaaaacca aaaaatcgcc
     2461 ttcaacatct gttacgaaga cggattcggc gacgaactga ttgccgccgc caaagatgcc
     2521 acactgcttg ccaatgccag caatatggcg tggtacggaa aatccaacgc catgtaccag
     2581 cacctccaac aatcgcaggc gcgggctatg gaactcggac gctatatggt ccgtgccacc
     2641 aacaccggcg caaccgccat catctccccc aaaggcaaca tcatcgccca agcccaaccc
     2701 gatacggaaa ccgtattgga aggacacatc aaaggctatg tcggcgaaac gccctatatg
     2761 aaaaccggca gttcatggtg gttgatgggc atattgaccc tagccgcact gattcttttc
     2821 atcttccgaa acaaagaaca ctgatacctg cacagcccgt ccggacgggc tgtctttttt
     2881 caaaacggct atttacatac aattacgtat gtaatataat tctgaaatcg aattgagcca
     2941 tcaggtttac aaaatcaatc aaacctgcct tacaaaattt tcctgtcttt caaaccttag
     3001 cgcatatctc ctgccaaaca tacaaaatac aagccaagca gtgatatact gcatcccaac
     3061 acagcaaacc gccgatacgc agtttcagcc gaaaggaaat gccccaaatg aataacgctt
     3121 tcgcattacc cgccatccaa agcggcaacg gcagcctcga acaatacatc cacaccgtca
     3181 acagcatccc gatgctgtcc caggaagaag aaacccgcct cgccgaacgc cggataaagg
     3241 gcgacctcaa cgccgccaaa caactcatcc tgtcccacct gcgcgtcgtc gtttccatcg
     3301 cgcgcggcta tgacggctac gggctgaatc aggcagacct gattcaggaa ggcaatatcg
     3361 gactgatgaa ggcggtcaaa cgctacgagc ccggtagagg cgcgcgtctg ttttcatttg
     3421 ccgtacactg gattaaagcc gaaatccacg agtttatttt gagaaactgg cgtttggttc
     3481 gcgttgccac caccaaaccg caacgcaagc tgtttttcaa tttacgcagt atgcgtaaaa
     3541 acctcaacgc cctgtctccc aaagaggcac aagacatcgc cgacgatttg ggtgtcaaac
     3601 tttccgaagt tctggaaatg gaacagcgca tgacgggaca cgacatcgcc atcatggcag
     3661 acaacagcga cgacgaggac agtttcgccc ccatcgactg gcttgccgac cacgattccg
     3721 aaccgagccg gcaactatcg aaacaggcgc attacgccct gcaaacagaa ggtttacaaa
     3781 acgctttggc gcaactggat gacaggagcc gccgtattgt ggaaagccgc tggcttcaag
     3841 acgacggcgg gctgacgctg caccagcttg ctgcagaata cggcgtctct gccgagcgca
     3901 tccgccagat tgaagcaaaa gccatgcaga aactgcgtgg tttcctgacc gaagaagccg
     3961 aagcggtttg aaatatacgc aataaaatac ccgacaaatt gttttgtcgg gtattttatt
     4021 tggtaaacat caatgcggtt tgtgcgtcgt gctgtacacg attttatccg tccacgccgt
     4081 tgcaattgcc gaaatcaaaa agcagacatg caccagacac tgccgcatca gctgcttttc
     4141 cgacagattg gcggaatt
//
LOCUS       DAXIFS010000162         4130 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.162, whole genome shotgun sequence.
ACCESSION   DAXIFS010000162 DAXIFS010000000
VERSION     DAXIFS010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.162"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            43..675
                     /locus_tag="ACFOCA_001683"
     CDS             43..675
                     /locus_tag="ACFOCA_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFC6988360.1"
                     /translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
                     DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
                     QDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVG
                     KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA"
     gene            747..2117
                     /gene="purB"
                     /locus_tag="ACFOCA_001684"
     CDS             747..2117
                     /gene="purB"
                     /locus_tag="ACFOCA_001684"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFC6988361.1"
                     /translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
                     ALAAEPKIVEVPPFSAGTLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKR
                     FAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDL
                     AAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKILQAQEFLGKINGAVGNYNAHMA
                     AYPDVDWETHCHNFVEIGLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVW
                     GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLAEKLPVSRWQ
                     RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
                     MRRYGVANPYEKLKDLTRGKGGITPEVLKVFIGSLEIPAEAKAKLLELTPALYVGKAE
                     ALAKRI"
     gene            2198..4066
                     /locus_tag="ACFOCA_001685"
     CDS             2198..4066
                     /locus_tag="ACFOCA_001685"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6988362.1"
                     /translation="MQAVRYRPEIDGLRAVAVLSVIIFHLNNRWLPGGFLGVDIFFVI
                     SGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQM
                     RKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKK
                     TKSLRVLRNISIILFLILTATSFLPSRFYTDILNQPNTYYLSTLRFPELLAGSLLAVY
                     GQTQNGRRQTASGKRQLLSLLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRS
                     MQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALT
                     AGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPG
                     APLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDTTLAD
                     NPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFQARFRETVKRIAA
                     VKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLVKDIPNV
                     HWVDAQKYLPKNTVEIHGRYLYGDQDHLTYFGSYYMGREFHKHERLLKSSRGGALQ"
BASE COUNT          935 a         1113 c         1075 g         1007 t
ORIGIN      
        1 tttttgacgg tgtacaatcg ctgtttttga acggaggatg gaatggagaa tacaaaccgt
       61 gtgccggagc aggcacgtta tgatgccgaa cgcaggcagg cagacgaagc attggcgggc
      121 gtgtttccgg cagtcagtat cttcggcagc gcgcgcacgc cgcagaatca tgcggattat
      181 gcgttcgcct gccgtctggc gcggcggctg tcggattcgg gcattgccgt catttcgggc
      241 ggcgggccgg ggattatgga ggcggcaaac aagggcgcgt ttgcagggaa gtcggtttcg
      301 gtggggctga acatcgtttt gccgcacgag cagaaaccga atccgtatca ggacatcgcc
      361 ttgcggtttt cccgttttgc cgaacgcaag gcggtgtttt tccgctattc ccaagcatat
      421 gtcgtgatgc cgggcggctt cgggacgctg gacgaattgt ttgaaatcct gaccttggtg
      481 cagacgggca aagtgccgcc gcgtccgatt gttttggtcg gaaaggcgtt ttggtcgggc
      541 ttggcggagt ggataaacgc gcagcttttg gcgcgcgggc tgatttccga aggggcggtc
      601 tctttgtttg ccatatcgga cgatgaagac gaaatcgttg cgtatctgtc ggaacacggg
      661 cttcagacgg catagcgtcc tgagagtgat gtataattgc aaacaattta acaatttttg
      721 atgtctttcc cgaacaggat gccgaaatga tcaaccccat cgcctcgctt tcccctttag
      781 acggccgtta tgcccaatcc gttgaagcat tgcgcccgat tttttcagag tacggcctga
      841 tgaaggcgcg cgtcaaagtc gaattaaact ggctcaaagc cctggccgcc gagccgaaga
      901 ttgtcgaagt gccgcccttc agtgccggaa cgcttgccga aatcgacacg gtgattgaaa
      961 acttttcatt ggaagacgcg gccgccgtca aagccatcga agccacgacc aatcatgatg
     1021 tcaaagccat tgaatattgg ctgaaaaaac gttttgccga agtgccggaa gtcgccgccg
     1081 tgagtgagtt catccacttc gcctgcacca gcgaagacat caacaacctg tcccacgctt
     1141 taatgctgca agaagcgcgt gaggctgttt tgctgccgaa gctggccgaa atcatcgaaa
     1201 aactgaccgc tatggcgcac gaccttgccg ccgtcccgat gatgagccgc acccacggcc
     1261 agcccgccac gcccacaaca ctgggcaaag aaaccgccaa cgtcgtgtac cgcctgcaac
     1321 gccagttcaa aatccttcag gcgcaagaat tcctcggcaa aatcaacggt gcggtcggca
     1381 actacaatgc ccatatggcc gcttatcccg atgtggattg ggaaacccac tgccacaact
     1441 tcgttgaaat cggcctcggt ttgaccttca acccctatac catccaaatc gagccgcacg
     1501 actatatggc tgaattcttc caaaccctca gccgcatcaa cacgattctc atcgacttta
     1561 accgcgacgt ttggggttat atttcattgg gttacttcaa acaaaaagtc aaagcgggcg
     1621 aagtcggctc ttccacgatg ccgcacaaag tcaaccccat cgattttgaa aactccgaag
     1681 gcaacctcgg tatggcaaac gccgtattgg gttttttggc ggaaaaactg cccgtctcac
     1741 gctggcagcg cgatttgacc gacagcaccg tcttacgcaa tatgggcgtg ggcgtgggct
     1801 atgccgtgtt gggctttgcc gcccacctgc gcggtctgaa caagctcgaa cccaaccctg
     1861 ccgcgcttgc cgccgatttg gatgccactt gggagctgct cgccgagccg attcaaaccg
     1921 tgatgcgtcg ttacggcgtg gccaatcctt acgaaaagct caaagacctg acgcgcggca
     1981 aaggcggcat tacgcccgaa gtgctgaaag tcttcatcgg atcgttggaa attccggcag
     2041 aagccaaagc aaaattgctt gagctgactc ctgcactgta tgtgggcaag gctgaagcgt
     2101 tggcgaaacg gatttgagcg tttactgaaa ccgatgccgt ctgaacgcgc gttcagacgg
     2161 catttttaag ataacgggac atacgggggc gatatttatg caagctgtcc gatacaggcc
     2221 tgaaattgac ggattgcggg ccgttgccgt gctatccgtc attattttcc acctgaataa
     2281 ccgctggctg cccggagggt ttttgggggt ggacattttc tttgtcatct cgggattcct
     2341 cattaccggc atcattcttt ctgaaataca gaacggttct ttttctttcc gggattttta
     2401 tacccgcagg attaagcgga tttatcctgc ttttatcgcg gccgtgtcgc tggcttcggt
     2461 gattgcctct caaatcttcc tttacgaaga tttcaaccaa atgcggaaaa ccgtggagct
     2521 ttctgcggtt ttcttgtcca atatttatct ggggtttcag caggggtatt tcgatttgag
     2581 tgccgacgag aaccccgtac tgcatatctg gtctttggcg gtagaggaac agtattacct
     2641 cctgtatcct cttttgctga tattttgctg caaaaaaacc aaatcgctac gggtgctgcg
     2701 taacatcagc atcatcctat ttctgatttt gactgccaca tcgtttttgc caagcaggtt
     2761 ttataccgac atcctcaacc aacccaatac ttattacctt tcgacactga ggtttcccga
     2821 gctgttggca ggttcgctgc tggcggttta cgggcaaacg caaaacggca gacggcaaac
     2881 agcaagcgga aaacggcagt tgctttcatt actctgcttc ggcgcattgc ttgcctgcct
     2941 gttcgtgatt gacaaacaca atccgtttat cccgggaatg accctgctcc ttccctgcct
     3001 gctgacggca ctgcttatcc ggagtatgca atacgggaca cttccgaccc gcatcctgtc
     3061 ggcaagcccc atcgtatttg tcggcaaaat ctcttattcc ctatacctgt accattggat
     3121 ttttattgcc ttcgcccatt acattacagg cgacaaacag ctcggactgc ctgccgtatc
     3181 ggcggttgcc gcattgacgg ccggattttc cctgttgagc tattatttga ttgaacagcc
     3241 gcttagaaaa cggaagatga ccttcaaaaa ggcatttttc tgcctctatc tcgccccgtc
     3301 cctgatactt gtcggttaca acctgtacgc aagggggata ttgaaacagg aacacctccg
     3361 cccgttgccc ggcgcgcccc ttgctgcgga aaatcatttt ccggaaaccg tcctgaccct
     3421 cggcgactcg cacgccggac acctgcgggg ttttctggat tatgtcggca gccgggaagg
     3481 gtggaaagcc aaaatcctgt ccctcgattc ggagtgtttg gtttgggtgg atacgacact
     3541 ggcagacaac ccgttatgtc gaaaataccg ggatgaagtt gaaaaagccg aagccgtttt
     3601 cattgcccaa ttctatgatt tgaggatggg cggccagccc gtgccgagat ttgaagcgca
     3661 atccttccta atacccgggt tccaagcccg attcagggaa accgtcaaaa ggatagccgc
     3721 cgtcaaaccc gtctatgttt ttgcaaacaa cacatcaatc agccgttcgc ccctgaggga
     3781 ggaaaaattg aaaagatttg ccgcaaacca atatctccgc cccattcagg ctatgggcga
     3841 catcggcaag agcaatcagg cggtctttga tttggttaaa gatatcccca atgtgcattg
     3901 ggtggacgca cagaaatacc tgcctaaaaa cacggtcgaa atacacggac gctatcttta
     3961 cggcgaccaa gaccacctga cctatttcgg ttcttattat atggggcggg aatttcacaa
     4021 acacgaacgc ctgcttaaat cttcccgcgg cggcgcattg cagtagcctg ccttcttgtc
     4081 ggatattgcc tttggcagcc tatgccgctg tttgcccttc ggggcggcgg
//
LOCUS       DAXIFS010000163         4071 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.163, whole genome shotgun sequence.
ACCESSION   DAXIFS010000163 DAXIFS010000000
VERSION     DAXIFS010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.163"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(175..1071)
                     /gene="argB"
                     /locus_tag="ACFOCA_001686"
     CDS             complement(175..1071)
                     /gene="argB"
                     /locus_tag="ACFOCA_001686"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFC6988363.1"
                     /translation="MESENIISAADKARILAEALPYIRRFSGSVAVIKYGGNAMTEPA
                     LKEGFARDVVLLKLVGIHPVIVHGGGPQINAMLEKVGKKGEFVQGMRVTDKEAMDIVE
                     MVLGGHVNKEIVSMINTYGGHAVGVSGRDDHFIKAKKLLIDTPEQNGVDIGQVGTVES
                     IDTGLVKGLIERGYIPVVAPVGVGEKGEAFNINADLVAGKLAEELNAEKLLMMTNIAG
                     VMDKMGNLLTKLTPKRIDELIADGTLYGGMLPKIASAVEAAVNGVKATHIIDGRLPNA
                     LLLEIFTDAGIGSMILGGGEDA"
     gene            1241..2371
                     /locus_tag="ACFOCA_001687"
     CDS             1241..2371
                     /locus_tag="ACFOCA_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HFC6988364.1"
                     /translation="MIKISTRFDAGSVVVKDLTDPSNIRLALRPDNASDFAQWFYFRL
                     QGAAYQNCIMHFDNAAEAAYPKGWEGYQACASYDRRNWFRVPTSYENGVLTVNHTPLS
                     NSVYYAYFEPYSEEQHLNLLGDAQGSGLCRIDDLGSTVQGRDINLLTIGNQVESDLKI
                     WITARQHPGETMAEWFVEGLLGRLLDHQDATARTLLDRATFYIVPNMNPDGSALGNLR
                     TNAAGVNLNREWENPTVEKSPEVFFVRERMLETGVDLFLDIHGDEGLPFVFVAGTEGV
                     PNYNPRISALETQFKTALLNASPDFQDEYGYEKDAPGQANVTLATNWVGNRFNCLAYT
                     LEMPFKDNANLPDDDFGWNGQRSLRLGEAVLSAILNVAGDLR"
     gene            2444..3295
                     /gene="lgt"
                     /locus_tag="ACFOCA_001688"
     CDS             2444..3295
                     /gene="lgt"
                     /locus_tag="ACFOCA_001688"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFC6988365.1"
                     /translation="MITHPQFDPVLISIGPLAVRWYALSYILGFILFTFLGRRRIAQG
                     LSVFTKESLDDFLTWGILGVIFGGRLGYVLFYKFSDYLAHPLDIFKVWEGGMSFHGGF
                     LGVVIAIWLFGRKHGIGFLKLMDTVAPLVPLGLASGRIGNFINGELWGRVTDINAFWA
                     MGFPQARYEDAEAAAHNPLWAEWLQQYGMLPRHPSQLYQFALEGICLFAVVWLFSKKQ
                     RPTGQVASLFLGGYGIFRFIAEFARQPDDYLGLLTLGLSMGQWLSVPMIVLGIVGFVR
                     FGMKKQH"
     gene            complement(3378..4040)
                     /locus_tag="ACFOCA_001689"
     CDS             complement(3378..4040)
                     /locus_tag="ACFOCA_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HFC6988366.1"
                     /translation="MDSQKFTEASKRRLSELLDAKSEQGNTMRCDEVQGFMTALLSGP
                     DKLTPLDWLPEVLGDESQFTAAERSEIERLVLAMAMETTAAMSDKKLPDLWLYENEDG
                     GSDFYTWCNAYLYGLDIVPTDWFEAVDDEAFEELFYPIMALGGIYDEEDNGTIRLQFT
                     EGELAELESELPYALADIYRYWQAVINKPQTVRREGEKTGRNDPCPCGSGRKYKACCG
                     KN"
BASE COUNT          892 a         1189 c          993 g          997 t
ORIGIN      
        1 aacaaccgga tttcaaaaaa accagattcc cgccttcgcg ggaatgacgg attttaggtt
       61 tctgttttgg tttctgtttt cgcgggaata acaacttaga aattgcccga aaccccaaaa
      121 acagaaaccg gacaaacggg ttttccgcca aagccggcat tttccgactt tgcttcaggc
      181 atcttccccg ccgcctaaaa tcatcgaacc gataccggca tcagtaaaga tttccaacaa
      241 aagcgcgttg ggcaacctgc cgtcgatgat gtgcgtggct ttcacaccgt tgacggcggc
      301 ttcgaccgca gaagcgattt tcggcagcat accgccatac agcgtgccgt cggcaatcag
      361 ttcatcaatc cgtttcggcg tgagtttggt cagcagattg cccattttgt ccatcacacc
      421 ggcgatattc gtcatcatca agagtttttc agcgttcaat tcttccgcca atttgcctgc
      481 taccaaatcg gcgttgatgt tgaacgcttc gcctttttca cctacgccga cgggggcgac
      541 gacgggaatg tagccgcgtt ctatcagccc tttaaccaaa ccggtatcga tgctttccac
      601 cgtaccgacc tgtccgatgt ccacgccatt ctgttcgggc gtatcgatca aaagtttctt
      661 cgccttaatg aaatgatcgt cgcgtccgct cacgccgacc gcgtgtccgc catatgtgtt
      721 aatcatcgac acgatttctt tattgacatg cccgcccaac accatttcga caatatccat
      781 cgcctctttg tcggtaacgc gcattccttg gacaaactca ccctttttgc cgactttttc
      841 aagcatcgca ttgatctgcg gcccgccgcc gtgaacgatg acgggatgaa tgccgaccag
      901 cttcagcagc acgacatcgc gggcaaaccc ttctttcaag gcaggttcgg tcatcgcgtt
      961 gccgccgtat ttgatgacgg cgaccgaacc ggaaaaccgg cggatgtaag gcagcgcttc
     1021 ggcaaggata cgcgccttgt cggcggcgga aataatgttt tcagactcca taacggctcc
     1081 ctattgttga caatttcggc ttatgttaac gccaaacgcc gtctgaaaca atcttcagac
     1141 ggcatccggc agactttcgg gcaggttgaa gccttgcgat acgggcggta aaatcgcggt
     1201 ttatccggtt cgagaaaccg gcgacagcaa ggactttccc atgattaaaa tcagcacccg
     1261 cttcgatgcc ggctcggtcg tcgtcaaaga cctgaccgat ccttccaaca tccgcctcgc
     1321 cctgcgtccc gacaacgcct ccgattttgc acaatggttc tacttccggc tgcaaggcgc
     1381 ggcatatcaa aactgcatca tgcattttga caatgcggca gaagccgcct acccgaaagg
     1441 ctgggaaggc tatcaggcgt gtgcctcata cgaccgccgc aactggttcc gcgtaccgac
     1501 ttcctacgaa aacggcgtac tgaccgtcaa ccataccccg ctgtccaata gcgtgtacta
     1561 cgcctatttc gaaccctatt ccgaagaaca gcacctcaac ctcctcggcg acgcgcaagg
     1621 cagcggcctg tgccgcatcg acgacttggg cagcaccgtg caagggcgcg acatcaatct
     1681 gctgaccata ggcaaccagg tcgaaagcga tttgaaaatc tggattaccg cccgccagca
     1741 tccaggcgaa accatggcgg aatggtttgt cgaggggctg ctcggcagac tgctcgacca
     1801 tcaggatgca accgcgcgca ccctgctcga tcgcgccacg ttctatatcg tccccaacat
     1861 gaaccccgac ggttcggcac tgggcaacct tcgcaccaac gccgccggtg tgaacctcaa
     1921 ccgcgaatgg gaaaatccga ctgtggaaaa aagccccgaa gtgttcttcg tgcgtgaaag
     1981 aatgctggaa accggcgtgg atttgttttt ggatatccac ggcgacgaag ggttgccctt
     2041 tgtctttgtt gcaggaactg aaggcgtgcc gaactacaat ccgcgcattt ccgcgttgga
     2101 aacacagttc aaaaccgccc ttttgaacgc cagccccgat ttccaagatg aatacggtta
     2161 cgaaaaagat gcgcccggtc aggcaaacgt gaccttggca acaaactggg tcggcaaccg
     2221 tttcaactgc cttgcctata cgttggaaat gccgttcaaa gacaatgcca acctgcccga
     2281 cgacgacttc gggtggaacg gtcaacgttc gttgcgcttg ggcgaagcgg tgctttccgc
     2341 cattttgaac gtcgccggcg atttgcgttg acactcccca ctgaaaaatg ccgtctgaaa
     2401 gcccttcccc ttttcagacg gcatttgaaa acgaaagccc gttatgatta cccatcccca
     2461 attcgacccc gtccttatca gtatcggtcc gcttgccgtc cgctggtatg ccctaagcta
     2521 catcctcgga tttattcttt ttacctttct cggcagaagg cgcatcgcgc aaggcttgtc
     2581 cgtttttacc aaagaatcgc ttgacgactt cctcacttgg ggcattttgg gcgtaatttt
     2641 tggtgggcgt ttgggttacg tcctgtttta caagttttcc gactacctcg cccatccgct
     2701 tgatattttc aaggtatggg aaggcggaat gtcgttccac ggcggctttt tgggtgtagt
     2761 tattgccata tggttgttcg gccgcaaaca cggcatcggc ttcctcaaac tgatggacac
     2821 ggtcgcaccg ctcgttccgc tgggtctcgc ttcgggacgt atcggcaact tcatcaacgg
     2881 cgaactttgg ggacgcgtta ccgacatcaa cgcattttgg gcaatgggct tcccgcaggc
     2941 gcgttacgaa gatgccgaag ccgccgcgca caatccgctt tgggcagaat ggctgcaaca
     3001 atacggtatg ctgccgcgtc atccctcgca gctttatcag tttgcacttg aaggcatctg
     3061 cctgttcgcc gtcgtttggc tgttctctaa aaaacagcgg ccgaccggac aagtcgcctc
     3121 gctcttcctc ggcggctacg gcatattccg cttcattgcc gaattcgcac gccaacccga
     3181 cgactatctc gggctgctga ccttggggct gtcgatgggg caatggttga gcgtcccgat
     3241 gattgttttg ggtatcgtcg gctttgtccg gttcggcatg aaaaaacagc actgaccgcc
     3301 tgtgaaaaat accgtctgaa acatggaaat ccggtttcag acggcatttt tacgtttggt
     3361 tcatggaaac aaacgcttca attcttaccg caacacgcct tgtattttct gccgctgccg
     3421 cacggacagg gatcgttcct gcctgttttt tcgccttccc tgcggacggt ttgcggcttg
     3481 ttgatgaccg cctgccagta gcggtagata tccgccaatg cataaggcaa ctcggattcc
     3541 agttccgcca gctcgccttc tgtgaattgc agacggatag tgccgttgtc ctcttcgtcg
     3601 taaataccgc ccaatgccat gatgggataa aacaactctt caaacgcttc atcatcgacg
     3661 gcttcaaacc aatcggtcgg cacaatatcc aaaccgtaaa gataagcatt gcaccatgtg
     3721 taaaaatcgc tgccgccgtc ttcgttttca tacagccaca aatcgggcag ttttttatcc
     3781 gacatcgcgg cggttgtttc catcgccatt gccaaaacca gccgttcgat ttcggaacgt
     3841 tcggcggcgg taaattgcga ttcgtcgccc aacacttcgg gcagccagtc gagcggtgtc
     3901 aatttgtccg gcccgctcaa cagcgccgtc ataaaacctt gaacctcgtc gcaacgcatc
     3961 gtgttgcctt gttcgctttt ggcatccaac aattcgctca accgccgttt ggatgcttcg
     4021 gtaaattttt gggaatccat cattttcctt ttcaaatggg ttttgcgccc t
//
LOCUS       DAXIFS010000164         4022 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.164, whole genome shotgun sequence.
ACCESSION   DAXIFS010000164 DAXIFS010000000
VERSION     DAXIFS010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4022
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.164"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(214..285)
                     /locus_tag="ACFOCA_001690"
     tRNA            complement(214..285)
                     /locus_tag="ACFOCA_001690"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(250..252),aa:Arg,seq:cct)
     gene            complement(305..751)
                     /locus_tag="ACFOCA_001691"
     CDS             complement(305..751)
                     /locus_tag="ACFOCA_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HFC6988367.1"
                     /translation="MNFSFVPLFLVTLILLGVVSNNNSITISATILLLMQQTALVQFV
                     PLVEKHGLNLGIILLTIGVLSPLVSGKAQVPPVAEFLNFKMISAVFIGIFVAWLAGRG
                     VPLMGQQPVLITGLLIGTVIGVAFMGGIPVGPLIAAGILSFVVGKG"
     gene            complement(756..1730)
                     /gene="ispB"
                     /locus_tag="ACFOCA_001692"
     CDS             complement(756..1730)
                     /gene="ispB"
                     /locus_tag="ACFOCA_001692"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HFC6988368.1"
                     /translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
                     GGKRLRPIMTILAGKAVGYDDGKLYSLAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
                     NLFGNAAAVLVGDFLYTRAFQLMVDSDSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
                     TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHERALKDYGMYVGTAFQIIDDVLDY
                     SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
                     VRSDALAYSIGEARKAVDCAVAALDALPDSEVKDAMIQLAKESLVRVS"
     gene            1954..2262
                     /gene="rplU"
                     /locus_tag="ACFOCA_001693"
     CDS             1954..2262
                     /gene="rplU"
                     /locus_tag="ACFOCA_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFC6988369.1"
                     /translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
                     ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
                     "
     gene            2287..2559
                     /gene="rpmA"
                     /locus_tag="ACFOCA_001694"
     CDS             2287..2559
                     /gene="rpmA"
                     /locus_tag="ACFOCA_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFC6988370.1"
                     /translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
                     FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
     gene            2794..3978
                     /gene="ubiM"
                     /locus_tag="ACFOCA_001695"
     CDS             2794..3978
                     /gene="ubiM"
                     /locus_tag="ACFOCA_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-demethoxyubiquinol-8 5-hydroxylase UbiM"
                     /protein_id="HFC6988371.1"
                     /translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
                     PYDGREIALTHFSREIMQRLGMWDKIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
                     EPADCLGYLISNHNIRRAAYEVVSQLDNVSILTDTVVKEVKTSDNEAQVILENGKILT
                     ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNQHTAYECFHYGRTIAL
                     LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKGRLGDMELVSSIHHYPLVG
                     MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGASSL
                     LEKYSNKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRAGNNFPPLKKLITKQL
                     TG"
BASE COUNT         1150 a         1110 c          874 g          888 t
ORIGIN      
        1 aatttaatcc actatatcat aaaacaacag atttccaagc cggaacatct tttacgaagc
       61 ctgaaaatca tttcatgatt ctaccgtcct aaaggtcggt ttttcaagca ggaagaaaaa
      121 gttttcagat ggcaaaaaag ccctccaaca ctgaaaggcc ttatatcgga aacttcccgc
      181 aacacgggaa acagacaaat gcaaatcgtc aaacctcgcc aacaggaatc gaacctgtat
      241 tttacgctta ggaggcatac gttctatccg ttgaactatg gcgagccgaa atgaaaagga
      301 gattttaacc ctttccgacg acaaaagaca agatgccggc cgcaatcagc ggcccgacag
      361 ggataccgcc cataaatgcc accccgataa ccgtcccgat taacagccct gtaattaaaa
      421 caggctgctg tcccatcaaa ggcacgccgc gtcccgccag ccaagccacg aaaataccga
      481 taaaaacggc ggatatcatt ttaaaattca aaaattcggc aacgggagga acctgcgcct
      541 ttcctgaaac caacggactc aaaaccccta tggtcaaaag aatgataccg agattcaacc
      601 catgcttctc gaccaacggg acaaactgta ccaatgccgt ctgctgcatc agcagcaata
      661 tggttgccga gatggtaatc gaattgttgt tgctgaccac ccccaacaga atcagcgtaa
      721 ccagaaacag gggaacaaaa ctgaaattca tcgcctcaag acaccctgac caaagattcc
      781 ttcgccagct gaatcatggc atccttcact tcgctgtcgg gcagggcatc caaggcggca
      841 acggcacaat cgactgcttt gcgcgcctcg cctattgaat atgccaaagc atccgaacgg
      901 acgacataat cgtggatttt ctcaaaatag ctgcgatctg cattttccaa agcagtacgc
      961 acatcgttcg caacctgttc ggaaccctga cgcatcagat aaatcaaagg caaagtcggt
     1021 tttccttccg ccaaatcgtc gccgacgttt ttgccggttt cttcggtttc gccagaatag
     1081 tccagcacat cgtcaataat ttggaatgcc gtaccgacat acataccgta gtctttcaac
     1141 gcccgttcgt gttcggggga agccttgccc aaaattgcgc cgacttgagc ggcagcttca
     1201 aacaattttg ccgttttata ttggatgact tggatatatt gttcttcggt aatgtccgta
     1261 ttgccgatgt tcatcagctg catgacttcg ccctcggcaa taatgttggt tgcatccgcc
     1321 atcacttcca aaacgcgcat actgtccgag tcaaccatca gttgaaaggc gcgcgtgtat
     1381 aaaaagtcgc caaccaacac tgccgccgca ttgccgaaca gattgtttgc cgttgcccgt
     1441 ccacggcgca aatcgctttc atcgacgaca tcgtcgtgca gcagcgtcga agtgtggata
     1501 aattcgacca tcgccgccag cgaatacagt ttcccgtcat cataaccgac cgccttaccc
     1561 gccaaaatcg tcataatcgg acgcaggcgt ttgccgcccg cgctgatgat atatgtaccg
     1621 atttgcgaaa tcagtgcgac atcggattgc accgcacggt tgatgacttc attgactttg
     1681 gcaaggtctt caggcagatg tcgctggaaa tagggcagat tttcgagcat ggcagactct
     1741 caggtttacg cttccatcaa acggcagata ccgcttgaaa gctgattcaa atagcgggca
     1801 attatatcag caaagccatc agggtacatc ttttcagacg gcatatggtt atccgaaccg
     1861 cgcaaacttt gacaaaacag gcaaataaca atacaatgcc gagttccgca caatggtgtg
     1921 cggatattaa ccataaccct tatggagttg agtatgtacg cggtcgtaaa aaccggcggc
     1981 aaacagtata aagtttccgt cggcgaaaaa ttgaaagtag aacagatacc agccgaactc
     2041 gacagccaaa tcgaactgac cgaagttttg atgattgctg acggcgaatc tgtaaaagtt
     2101 ggcgcaccct ttatcgaagg tgcaaaagta acggctaaag tagtggcaca cggtcgtggc
     2161 gaaaaagtcc gcatcttcaa aatgcgccgc cgcaaacact accaaaaacg ccaaggccac
     2221 cgccaaaatt tcacccaaat cgaaatcgtg gcaatcgcct aaccttaaaa cttaggagca
     2281 ttacaaatgg caagtaaaaa agcaggcggc agcacccgca acggtcgcga ttcagaagcc
     2341 aaacgcttgg gcgttaaagc ctacggcaac gagctgattc ccgcaggttc catcatcgta
     2401 cgccaacgcg gtaccaaatt ccacgcaggc gacaacgtag gcatgggcaa agatcacact
     2461 ttgttcgcca aagttgacgg ttatgttgaa ttcaaaacca aaggtgcgct gaaccgtaaa
     2521 actgtcagca tccgtcctta caccggttct gaagaataat ccaaccgata cctgaagccg
     2581 catcttttca cgatgcggct ttttacatac cccacacccg atttgataca cattaagctg
     2641 aaagtaaaaa tccgcataca tcctcccctg catatttctt caacagcggg ttttgatata
     2701 atcgcctatc tgttacagat agttcaaacg gcattcaaac ccttacaaat gccgtctgaa
     2761 atcatcggca tccgtctatg caaaggatat tttatgagtt tacacagcga catcctcgtc
     2821 gtcggcgcag gcccggcggg tttaagtttt gcagccgaac ttgccggcag cggtttgaaa
     2881 gttaccctga tcgaacgcag cccactgact gttctgcaaa atcctccata tgacggacgc
     2941 gaaatcgccc tgacccattt ttcccgcgaa atcatgcagc gtttgggtat gtgggacaaa
     3001 attcccgaaa acgaaatcta ccctttgcgc gatgccaaag tgctgaacgg acgttccgac
     3061 taccagctcc actttcccca accgactgaa gcgcgcggcg aacctgccga ctgtttgggc
     3121 tatctgattt ccaaccacaa tatccgccgc gccgcctatg aagtcgtatc acaactcgac
     3181 aatgtcagca ttctgaccga tacggttgtc aaagaagtca aaacatctga caacgaagca
     3241 caagtcattt tggaaaacgg caaaatcctg actgcacgcc tgcttttggc ggcagacagc
     3301 cgcttctcgc aaacccgtcg acaactcggt atctcctccg atatgcacga ttacagccga
     3361 accatgttcg tctgccgtat gaaacatacc ctttccaacc aacataccgc ttacgaatgc
     3421 ttccattacg gacgcaccat cgcactgctg ccgctggaag agcacctgac caataccgtc
     3481 attaccgtcg ataccgataa aatcaacagc gttcaaaacc tttcgcccga agaattggcg
     3541 gcaagcgtaa aagaacaact caagggtagg cttggcgaca tggaactggt cagcagcatc
     3601 caccattacc cccttgtcgg tatgattgcc aaacgtttct acggcaaacg cagcgcgctg
     3661 atcggcgatg cggcggtcgg tatgcaccct gtaacggcac acggcttcaa cttgggtctt
     3721 tccagcgcag atattctggc aaaactgata ctcgaagccg aacaacgcgg tcaggacatc
     3781 ggcgcatctt ccttgttgga aaaatacagc aacaaacata tgctgcacgc ccatccgctt
     3841 tatcacggaa ccaatatgat gctgaaactg tttaccaacg aaaccgcgcc ggcaaaactg
     3901 ctgcgcggtt tggtattgcg tgccggcaac aacttcccgc cgctgaaaaa gctgattacc
     3961 aaacaactga ccggttgaaa actgccgaaa tgccgtctga aacgtttcag acggcatttt
     4021 tg
//
LOCUS       DAXIFS010000165         4016 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.165, whole genome shotgun sequence.
ACCESSION   DAXIFS010000165 DAXIFS010000000
VERSION     DAXIFS010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4016
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.165"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(75..2921)
                     /gene="uvrA"
                     /locus_tag="ACFOCA_001696"
     CDS             complement(75..2921)
                     /gene="uvrA"
                     /locus_tag="ACFOCA_001696"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFC6988372.1"
                     /translation="MCNHHPQHSHDNDTIRIRGARTHNLKNVDLDIPRHKLVVVTGLS
                     GSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTS
                     HNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHKLPLSSQTVSQMVDAVLKLPEDTRVM
                     ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRV
                     KVKADIKQRLAESFETALRHGNERALAMEMESGEEHWFSARFACPVCSYSLPELEPRL
                     FSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLA
                     RHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLER
                     RYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVSGEPLHEVSAWPLTKTHQ
                     FFETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLAS
                     QIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAIREADFV
                     VDMGPGAGEHGGNVLIADTPENVAQCENSVTGQYLSGKKSIAVPSERTPVNPDRMLVL
                     KGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYD
                     DIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGIPLSRERGYNVGRFS
                     FNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLD
                     MTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRD
                     TGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADYIVDLGP
                     EGGDGGGRIIASGSPEEVAKVKGSYTGKYLKVVL"
     gene            3076..3873
                     /locus_tag="ACFOCA_001697"
     CDS             3076..3873
                     /locus_tag="ACFOCA_001697"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFC6988373.1"
                     /translation="MNRLYPHPIIAREGWPIIGGGLALSLLVSMCCGWWSLPFWVFTV
                     FALQFFRDPAREIPQNPEAVLSPVDGRIVVVERARDPYRDVDALKISIFMNVFNVHSQ
                     KSPADCTVTKVVYNKGKFVNADLDKASTENERNAVLATTASGREITFVQVAGLVARRI
                     LCYTQAGAKLSRGERYGFIRFGSRVDMYLPVDAQAQVAIGDKVTGVSTVLARLPLTAP
                     QIESEPESEPALQTAPVETAANPSAEQRQIEAAAAKIQAAVQDVLKD"
BASE COUNT          816 a          977 c         1209 g         1014 t
ORIGIN      
        1 tgaattattc gatgtaatta aactttcatc aatagcacta aaaaaataat ttgaactcat
       61 tttaaatctc ctaattacaa aaccactttc aaatacttcc cagtataact ccccttaacc
      121 ttcgccactt cctcagggct acctgaagca ataatccttc ccccaccgtc gccgccttcc
      181 ggccccaaat ccacaatata atcagccgtt tttataacgt caagattatg ctcgataatc
      241 acaattgagt tgcctttgcc tttcagacgg cctatcactt ccagcagcag ggcgatgtcg
      301 gcgaagtgta ggccggtggt gggttcgtcg aggatgtaga gcgttctgcc ggtgtcgcgt
      361 ttggagagtt ccaaggcgag tttgacgcgc tgggcttcgc cgccggagag ggtggtggcg
      421 gactgaccga ggcggatgta gcctaggcct acgtccatca gggtttgcag tttgcgcgat
      481 acggtgggga cggcatcgaa aaattcgcgg gcttcttcga cggtcatgtc gaggacttgg
      541 ctgatgtttt tgcctttgta ttggatttcg agggtttcgc ggttgtagcg tttgccgtgg
      601 cagacttcgc aggggacgta cacgtcgggc aggaagtgca tttcgacttt aatcacgccg
      661 tcgccttggc aggcttcgca gcggccgcct ttgacgttga aggaaaagcg gccgacgttg
      721 tagccgcgtt cgcgcgagag ggggatgccg gcgaagagtt cgcggatggg ggtgaacagg
      781 ccggtgtagg tggcggggtt ggagcgcggg gtgcggccga tgggggattg gtcgacgttg
      841 atgactttgt cgaggtgttc gaggccgcgg atgtcgtcgt atggggcggg ttcttcttgg
      901 gcgcggttga gttcgcgggc ggtaattttg gcgagggtgt cgttaatcag ggtggatttg
      961 ccgctgccgg atacgccggt gatgcaggta atcaaaccga gcggcagctc aagggtaacg
     1021 tttttgagat tgttgccgcg tgcgcctttg aggacgagca tccggtcggg attgacgggc
     1081 gtgcgttcag acggcacggc aatggatttt ttgccgctga ggtattgtcc ggtaacggag
     1141 ttttcgcatt gggcgacgtt ttcgggcgtg tcggcaatca gtacgttgcc gccgtgttcg
     1201 cctgcgccgg ggcccatatc gaccacgaaa tcggcttcgc ggatggcgtc ttcgtcgtgt
     1261 tcgaccacaa tcacgctgtt gcccaaatcg cgcagtcgtt tgagggtggc cagcaggcgg
     1321 tcattgtcac gctggtgcag gccgatggag ggttcgtcca gtacatacat cacgccggtc
     1381 aggccgctgc cgatttggct ggcgaggcgg atgcgctggg cttcgccgcc ggagagggtt
     1441 tcggcggagc ggcttaaatt caggtaatcc agcccgacgt taatcaggaa gccgaggcgt
     1501 tcggtgattt ctttgaggat tttttcggcg atttgttttt tgttgccgtc taaatccagt
     1561 gtttcaaaga attggtgggt tttggtgagc ggccaggcgg aaacttcgtg cagcggttcg
     1621 ccgctgacgt aaacgtagcg ggcttctttg cgcaaacgtg caccaccgca gctcgggcag
     1681 gcgcggtggt tctggtattc gcgcaatttt tcgcgcacgg tttcgctgtc ggtttcgcgg
     1741 tagcggcgtt cgagattggg aatgatgcct tcgaaggcgt ggctgcggtt gaaggtggtg
     1801 ccgcgttcgg ataggtaggt gaaatcaatg acttccttgc ccgagccgtg cagcacgact
     1861 tttttgactt tttcaggcag cgtttcccaa gcagcctgca catcgaaacc gtaatgccgc
     1921 gccagcgact gaatcatttg gaaatagaac tggttgcgct tatcccagcc gtcaatcgcg
     1981 cccgttgcca gcgacaattc gggatgcgcg accacttttt cgggatcgaa gaagttggtg
     2041 ttgcccaagc cgtcgcaagt tgggcaggag cccatcgggt tgttgaacga aaacaggcgc
     2101 ggctctaatt cgggcaggct gtatgaacat acgggacagg cgaaacgcgc ggaaaaccaa
     2161 tgttcttcgc cgctttccat ttccatcgcc agcgcgcgct cgttgccgtg gcgcagtgcg
     2221 gtttcaaaac tttccgccag ccgctgcttg atgtccgcct tcactttcac gcggtcgatg
     2281 accacgtcga tattgtgctt gatgtttttc tccagcttcg gcacttcgtc aagctgataa
     2341 acttcgccgt ccacgcgcac acgggcaaag ccttgcgcct gcaagtcggc aaagaagtcg
     2401 acaaactcgc ccttacgctc tcgtaccgcc ggcgccagaa tcatcacgcg cgtgtcttcc
     2461 ggcagtttta agacggcatc aaccatttga gatacggttt ggctggatag cggcagcttg
     2521 tgttcggggc agtagggtgt gccgacgcgt gcgtacaaaa ggcgcagata gtcgtggatt
     2581 tccgtaaccg tgccgacggt ggaacgcgga ttgtggctgg tggatttctg ctcgatggaa
     2641 atcgcgggcg acaggccttc gatcaaatcg acatcgggtt tgtccatcat ctgcaaaaac
     2701 tgccgcgcat aggcggacag gctctcgaca taacgccgct gtccttcggc atacagcgtg
     2761 tcgaacgcca gcgatgattt gccgctgcct gacaatcctg ttaccaccac cagcttgtgg
     2821 cgcggaatgt ctaaatcgac gtttttcaaa ttatgcgtgc gcgcgccgcg tatgcggatg
     2881 gtgtcgttgt cgtgcgaatg ttggggatga tggttgcaca taatggatgc cgcctgaaaa
     2941 ataaaggaaa accgatattg tagcacttta tcaaataacg tcttaagcag gattcagacg
     3001 gcatttgtcg gcggagtacg gcagattccg ctataatgtc ggcaatttta acccgcttga
     3061 acaaaaggat gacaaatgaa ccgtctttac ccccacccga ttatcgcccg tgagggctgg
     3121 ccgattattg gcggcggttt ggctttgagc ctgctggtgt cgatgtgttg cggctggtgg
     3181 tctttgccgt tttgggtgtt taccgtattt gccctgcagt ttttccgcga ccctgcgcgt
     3241 gagattccgc aaaatcctga agcagtgttg agtccggttg acggccgtat cgtggtggtc
     3301 gagcgcgcac gcgatccgta tcgtgatgtc gatgctttga aaatcagtat ttttatgaac
     3361 gtgttcaacg tgcattcgca aaaatcgcct gccgattgta cggtaacgaa agtggtctat
     3421 aacaaaggca aattcgtgaa tgcggatttg gacaaagcca gcacggaaaa cgaacgtaat
     3481 gcggtgttgg cgactacggc ttccggtcgt gaaattactt ttgttcaagt ggccggtttg
     3541 gtggcgcgcc gtattttgtg ctacacccaa gcaggtgcga aactgtcccg cggcgaacgt
     3601 tatggcttta tccgcttcgg ttcgcgcgtg gatatgtatc tgcctgtcga tgcgcaggcg
     3661 caagtggcga ttggcgataa agtaactggc gttagcactg tattggcgcg tttgccgctg
     3721 actgcgccgc aaatcgaatc cgagcctgag tctgagcctg ctttacaaac tgctccggtt
     3781 gaaacagcgg caaacccatc tgccgaacaa cggcaaatcg aggcagcggc ggctaagatt
     3841 caggcggctg tgcaagatgt gttgaaagat taattttgcg aactgaaata gaaaatatca
     3901 gtaccatcat tcacacgaat gaggaagttt ggttttttga atttttgcta atgttcacac
     3961 cgttatgttc acgaaaatgg gaatctggaa atttaacgtt acggtgattt atcaga
//
LOCUS       DAXIFS010000166         4010 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.166, whole genome shotgun sequence.
ACCESSION   DAXIFS010000166 DAXIFS010000000
VERSION     DAXIFS010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.166"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..533
                     /gene="mafB"
                     /locus_tag="ACFOCA_001698"
     CDS             <1..533
                     /gene="mafB"
                     /locus_tag="ACFOCA_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6988374.1"
                     /translation="DQWMQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKAAVSGDF
                     SDSYKHNTASRLSQSVDGEMFQTRNVDFKAKSIGTKIHDGAQGKHISGHRNYIEGKST
                     LNQNINPQELLNGIHSGAYPVISKGARGNPVVDFGYPIGSDGKSGLSTNFGTIHSGKN
                     GVHIVPANPKTIKKVQ"
     gene            536..853
                     /locus_tag="ACFOCA_001699"
     CDS             536..853
                     /locus_tag="ACFOCA_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988375.1"
                     /translation="MNILPSWLRVGMNIAMLGMIHSDIRLITVDYEERRRFLKIKNYL
                     SREAITEDHEDMEYLITELWSMCGEYFDEADFECIYSNHSSMELNQINGAVFRRKELI
                     SQA"
     gene            954..1694
                     /locus_tag="ACFOCA_001700"
                     /pseudo
     CDS             954..1694
                     /locus_tag="ACFOCA_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798991.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
     gene            1697..2020
                     /locus_tag="ACFOCA_001701"
     CDS             1697..2020
                     /locus_tag="ACFOCA_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HFC6988376.1"
                     /translation="MIVDEKSTSDVLKQYQELGFDLTKSMIIEFFIEGSQKNLQSIES
                     QIISYRQDFQISIEQNEFGEMWTCYCSVNIIPSLENILAIETTLFDIAQKNDCNYEGF
                     GSYGN"
     gene            2253..2525
                     /locus_tag="ACFOCA_001702"
     CDS             2253..2525
                     /locus_tag="ACFOCA_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988377.1"
                     /translation="MMSVKELFKVILDENKDFPIRTIHRTPMGILPKPVALSIVQYEN
                     DPGFYLFYLDETGQEQTDTYHDTLDSAFEQAEFEFGISKEEWMQSP"
     gene            2507..2659
                     /locus_tag="ACFOCA_001703"
     CDS             2507..2659
                     /locus_tag="ACFOCA_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988378.1"
                     /translation="MDAKSLDGKIKMPLYFSDGISVNKKVGIGAQNSLRLAGIGMKSL
                     RKNDYS"
     gene            2646..3191
                     /locus_tag="ACFOCA_001704"
     CDS             2646..3191
                     /locus_tag="ACFOCA_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HFC6988379.1"
                     /translation="MIIVEHLEHYLGEIESGIKCLDRRYHLSVSVFPSQPYKGVTTFS
                     TLGLNRYDLNYKSRFELIFTCSEEWNKENIAAFLSGVAEYLIDNRQPILRGEIIQLPR
                     VIIEGSKMDALYVSAPFYFDDDFQVCYGEHYNIVFPLLVPLYKQEAELVEKKGWNAFE
                     QFLLDNEVGNLSDMNRKPFTW"
     gene            3327..>4010
                     /locus_tag="ACFOCA_001705"
     CDS             3327..>4010
                     /locus_tag="ACFOCA_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
                     /protein_id="HFC6988380.1"
                     /translation="MVKTADGYKAIARIRTGDRVFAKDEASGKTGYKPVTARYGNPYQ
                     ETVYIEISDGIGNNQTLISNKIHPFYSQGKWIQAGRLKKGDTLLSESGAKQTVQNITF
                     KQQPLKAYNLTVADWHTYFVKGSQAETEGVWVHNDCPYDKGNQRYKDASYHGKNDNSV
                     KSRAPTNGQAALDNSVQVKSTSPRRVGVDKANNEIVVLDKTQTFNNGFAEYHGHVRSW
                     QDLHTDQKNA"
BASE COUNT         1336 a          765 c          842 g         1067 t
ORIGIN      
        1 ttgaccagtg gatgcaggaa aaccccaatg ccgccgaaac cgtcgaagcc ctggtcaacg
       61 tcctgccgtt tgccaaagtc aaaaacctga caaaggcggc aaaaccgggg aaggctgcgg
      121 ttagtgggga tttctcagac tcctacaagc ataacactgc ttcaagatta tctcagtctg
      181 tagatggaga aatgtttcaa acccgcaatg ttgattttaa agcaaaatct attgggacta
      241 aaattcatga tggagctcaa gggaaacata tttcaggaca tagaaactac attgaaggta
      301 agagtacttt aaatcaaaac attaatcctc aagaattgtt gaacggaata cattcaggtg
      361 cttatccagt tatttctaaa ggagcaagag gaaatcctgt tgttgatttt gggtatccta
      421 taggcagcga tgggaaatca ggattaagta ccaattttgg tacgattcat tcaggtaaaa
      481 atggagttca cattgttccg gctaacccta aaaccattaa aaaggtgcaa tagttatgaa
      541 tatattacca agctggctgc gagtcggtat gaatatagca atgctgggca tgatacactc
      601 agatatcagg ttaattaccg tagattacga ggaaagaaga aggtttttaa aaatcaaaaa
      661 ttatttatca agagaagcca tcacagaaga ccatgaagat atggaatatt tgattacaga
      721 gttatggtct atgtgtggag aatattttga tgaagctgac tttgaatgta tttattctaa
      781 tcattcttct atggagttaa accaaataaa tggtgcagta ttcaggagaa aggaattaat
      841 ttcgcaagcg taggttaaaa aaccaacaat cacaatgtct tctgaaaccg tgtttaattt
      901 tcagacggca tttccttcat ttgaaatagg atattgagaa ctgagttctt caaaaatcct
      961 acacctgctc cttccacggc agcaccttgg tcaaaacggc agacggctac aaagccattg
     1021 cccatattca agccggcgac cgcgtcttcg ccaaggacga ggcaagcgga aaaacgggat
     1081 acaaacccgt taccgcccga tacggcaatc cgtatcggga aaccgtttac attgaaattt
     1141 cagacggcat cggcaacaac caaaccctga tttccaataa aatccacccg ttttacagtc
     1201 aaggaaaatg gatacaggca ggtcgtctga aaaaaggcga caccctgctt tccgaaagcg
     1261 gtgcaaaaca gacggttcaa aacattaccc tcaaacagca gccgctcaaa gcctacaacc
     1321 tgaccgttgc cgactggcat acttacttcg tcaagggtga taaggcggaa acggaagggg
     1381 tttgggttca taatgagtgt ccgtatggag aaaaatatag gacagaagtt ggttcttata
     1441 ctaatactca tgaaagtggt cgaacttatt ctggaaaggg cacaagacaa cgttcccaaa
     1501 tctctggagc aagagaagct agggttaata atgaccctca tatagctaca gattttactc
     1561 ctgccaaaaa taatcgagag gcattcaaag atgaatctag aagaattgac gctcacggtg
     1621 gttccaaaag taccaataat tacaatcgaa ttgaaagccc ggggaaaaaa tatcgaaaac
     1681 aagatggaga ttaaaaatga ttgttgacga aaaatctact tcagatgtac tgaaacaata
     1741 tcaagaacta gggtttgatt tgacaaaatc gatgataata gagtttttta tagagggttc
     1801 tcaaaagaat ctgcaatcaa tagaaagtca aatcatttct tatcggcaag attttcaaat
     1861 cagtattgag caaaatgaat tcggagaaat gtggacttgc tattgttccg tcaatattat
     1921 cccttctctt gaaaacattt tagctattga aactacgtta tttgatattg cacaaaaaaa
     1981 tgattgtaat tatgaaggtt ttggttcgta tgggaactaa caagaagtgt aggttgggtt
     2041 gaaaaacaca acaatcaaaa ggtcgtctga aaccatgttt aattttcaga tggcttttcc
     2101 ttcatttaaa acaggatatt gagatctaag ttctttaaaa atcctacacc tgctccttcc
     2161 acggcagcac cttggtcaaa acggcagacg gctacaaagc caatggacgt gtaatagaaa
     2221 atagtgcggt aacaattatt cgggattgaa gaatgatgag tgtaaaagaa ttattcaaag
     2281 tcatcttaga tgaaaataaa gattttccta ttagaacgat tcatcgtacc ccgatgggga
     2341 tacttcccaa acctgttgct ttaagtattg ttcaatatga aaatgacccg ggattttatt
     2401 tgttttattt ggatgagacc ggtcaggaac aaacggatac ttatcatgac acattagatt
     2461 cggcatttga acaggctgaa tttgaatttg gaatcagcaa agaggaatgg atgcaaagtc
     2521 cttagacggc aaaatcaaga tgccgcttta tttttcagac ggcatttccg tcaataaaaa
     2581 agtcggtatt ggagcccaaa acagcctacg tcttgccggg atagggatga aatctttaag
     2641 aaaaaatgat tatagttgaa catttagaac attatttggg tgaaatcgaa agcggtataa
     2701 aatgcttgga tcgacgttat catctcagcg tttccgtctt cccatcacaa ccatataaag
     2761 gggtaactac tttttctact ttaggcttga atcgatatga cttgaactat aagagtaggt
     2821 ttgaattaat ttttacctgt tctgaagaat ggaataaaga aaatattgca gcttttctat
     2881 caggagtggc tgaatatttg attgacaata gacaacctat tttaagaggt gaaattattc
     2941 aattacccag ggtaattatc gaaggtagca aaatggatgc actgtatgtt tccgccccat
     3001 tttatttcga cgatgatttt caggtctgtt atggcgaaca ctacaatatc gttttccctt
     3061 tgcttgtccc gttgtataaa caggaagcag aattggtgga aaaaaagggt tggaatgctt
     3121 ttgagcagtt cttgctggat aatgaagttg gcaacctttc ggatatgaat cggaaaccgt
     3181 ttacttggta aggattttct taaatttaat caaagtgccg tctgaaaccg tgtttaattt
     3241 tcaggcgacc ttccccttat tttaaacagg atattgggaa ctaagttctt caaaaatcct
     3301 acacctgctc cttccacggc agcaccttgg tcaaaacggc agacggctac aaagccattg
     3361 cccgtatccg aaccggcgac cgcgtcttcg ccaaggacga ggcaagcgga aaaacgggat
     3421 acaaacccgt taccgcccga tacggcaatc cgtatcaaga aaccgtttac attgaaattt
     3481 cagacggcat cggcaacaac caaaccctga tttccaataa aatccacccg ttttacagtc
     3541 aaggaaaatg gatacaggca ggtcgtctga aaaaaggcga caccctgctt tccgaaagcg
     3601 gcgcaaaaca gacggttcaa aacattacct tcaaacagca gccgctcaaa gcctacaatc
     3661 tgaccgtcgc cgattggcat acctacttcg tcaagggcag tcaggcggaa acggaagggg
     3721 tttgggttca taatgattgt ccgtatgata aaggcaacca acgatataaa gacgcttctt
     3781 atcatggcaa aaatgataat tctgtgaaaa gtagagcacc aacaaacgga caagcagctc
     3841 ttgataattc cgttcaagtt aaatcaactt ctcctcgaag agttggggtt gataaagcca
     3901 ataatgaaat cgttgtatta gacaaaactc aaacttttaa taacggtttt gcggaatatc
     3961 acgggcatgt cagaagttgg caagatttgc ataccgatca gaaaaatgct
//
LOCUS       DAXIFS010000167         3954 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.167, whole genome shotgun sequence.
ACCESSION   DAXIFS010000167 DAXIFS010000000
VERSION     DAXIFS010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3954
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.167"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(186..380)
                     /locus_tag="ACFOCA_001706"
     CDS             complement(186..380)
                     /locus_tag="ACFOCA_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HFC6988381.1"
                     /translation="MKHKLSSWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTK
                     LQFQDYCRKRRCGANGGRCC"
     gene            complement(370..2451)
                     /locus_tag="ACFOCA_001707"
     CDS             complement(370..2451)
                     /locus_tag="ACFOCA_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFC6988382.1"
                     /translation="MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISV
                     YCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPG
                     VIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKI
                     GEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLT
                     PRDYLSTFLKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPFLFITIAC
                     GAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAM
                     NSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMA
                     HIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTD
                     SIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLI
                     KMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEVLAP
                     AKDIGEMAQIIFNDKINAGLTILFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYR
                     DSKQPEAQSEA"
     gene            2927..3307
                     /locus_tag="ACFOCA_001708"
     CDS             2927..3307
                     /locus_tag="ACFOCA_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HFC6988383.1"
                     /translation="MNIRFFALTVPVLSLAACAVPEAYDDGRRGYMPPVQNQAGPNDF
                     RAFSCENGLSVRVRRLDGGKIALRLDGRRAVLSSDVAASGERYTAEHGLFGNGTEWHQ
                     KGGEAFFGFTDAYGNSVETSCRAR"
     gene            complement(3440..3933)
                     /locus_tag="ACFOCA_001709"
                     /pseudo
     CDS             complement(3440..3933)
                     /locus_tag="ACFOCA_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713843.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="contact-dependent growth inhibition system
                     immunity protein"
BASE COUNT          925 a          983 c         1117 g          929 t
ORIGIN      
        1 tacggcgttg tctcgccttg gctcaaagag aacgattctc taaggtgctg aagcaccaag
       61 tgaatcggtt tcgtactatt tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt
      121 taatccacta tattataaaa attccgtctg aagcggcgtt cagacggaat ttgtttcaag
      181 caggcttaac agcagcgtcc gccgtttgcg ccgcagcgac gtttgcggca atagtcttga
      241 aactgcagct tggtcatcac aggggcgttg ggattatgtt tgcgctgctg tgcaacgtag
      301 ttttcataat cgggcacgcc tgccatcaag tttgctgtca gcttgatggt tttccaccaa
      361 gacgagagct tatgcttcac tttgtgcctc cggctgtttg ctgtcgcggt acaccgccgg
      421 gatttctttg gcggtcggcc agccgacttt gcgtgctttg agggcggtac gcaaaccgta
      481 cgcggcgaca atcacgacaa ccgacaagaa gaggatggtc agaccggcat taatcttgtc
      541 gttgaagatg atttgcgcca tttcgccgat gtctttggca ggcgcaagga cttcgttttt
      601 agccaatgcg tcgctgtatt tgccggcgtg ggcaaggaag ctgatgcgcg ggtcgctgtg
      661 gaacagtttt tgcaggccgg cgtagcaggt tacgaacagt acgccgacgg cgggaacgag
      721 taccacccaa acataacggt cgcgtttcat cttaatcagc accacggcgc acataatcaa
      781 ggccacgcct gccagcattt ggttggcgat gccgaacaaa ggccagagcg agttgatgcc
      841 gcccagcggg tcggttacgc cggtgtagag gaagtagccc cacaatgcca cggcgaagaa
      901 ggtcgcaatc aggttggcgg ggatggagtc ggtgttgccg aaaggtttgt agaagatgct
      961 gcccaagtct tgaatcataa aacgtgcgac gcgcgtaccg gcatcgacgg cggtcaggat
     1021 gaacaaggct tcaaacaata gggcgaagtg ataccagaac gccatcatcg cctcgcccgg
     1081 aatcaggcgg ctcataatgt gcgccatacc gactgcgagg gttggcgcac cgcctgcacg
     1141 ggaaaggatg gtgttttcgc ccacttcctt agcggtatgc aacagggttg ccgcatcgac
     1201 agggaattgc agcttggtgg taatcacttc ggcggcggtg ttggcatccg taccgatcag
     1261 ggcggcaggg ctgttcatgg cgaagtacac gccgggatca agcgatgcgg cggcggcaag
     1321 cgccataatg gctacgaaac tttccatcaa cataccgccg taaccaatca tacggacgtg
     1381 ggtttcgttt tccagcattt tcggcgtggt gccggaggaa atcagcgcgt ggaagcccga
     1441 aaccgcaccg caggcgatgg tgatgaagag gaacgggaac aatgcgcctg agaataccgg
     1501 acccgaaccg tcgataaagt gggttacggc aggcatttgc aaagtgggat tgacgatgac
     1561 gatgcccaaa gccaaggccg caatcgtacc gattttcagg aaggtggaga gatagtcgcg
     1621 cggagtgagc agcaaccata cgggcaatac ggaggcgaca aagccgtaaa tcataatcgc
     1681 ccaagtgagc tggatgccgt caaggtcgaa ccaatgtccg atggaacttt tcgccacatc
     1741 ttcgccgtaa attaccgcca gcatcagcaa aataaagccg acgatggaaa tctcgccgat
     1801 tttgcccgga cggatatagc gcgtgtaaat acccataaac agggcaatcg gcatagtggc
     1861 ggcgatggta aacgtacccc aagggctgtg aacaagtgct tttacgacaa tcaacgccaa
     1921 caccgccata atgatgacca taatcatcaa aataccgatg gaggcaatca cgccggggac
     1981 agtgccgagt tcctgtttca caatatcgcc caaagactta ccgtcacggc gcatagaaac
     2041 aaacagtacc atcatatcct gtaccgcgcc ggcaaaaacc acgccgaaga taatccacaa
     2101 agtaccgggc aggtaaccca tttgcgcagc cagtacaggg ccgaccaaag ggcccgcgcc
     2161 ggcaatcgcg gcaaagtggt gtccgaacaa tacgcccttg tgcgtcggaa cgtagtccaa
     2221 gccgtcgttg tggcgttctg ccggagtcag gcggttagga tcgagccgca ttacgcggtt
     2281 ggcgatgtag aggctgtaaa aacggtaggc gatgcagtaa acggatatgg cggcggtaac
     2341 catccatacc gcgctgacct gttcgcctcg gctgagagcc agagtggtaa aggatgctaa
     2401 gccgaccagt accactatgc cccaaatgag gaaggttttg agtgatttca tcgaataaat
     2461 ccttatctca cactgtcgga atatgcctga acggcgggaa acggatgacc gcctgccggc
     2521 acgggcacaa accggagtct gaatgattga cgaagtatga aacagtgcgc ttgtcgggat
     2581 ttgtgcctta tgcccgcatc aaacagtgca gggatgcggg cgcacaaaac gttaaacgcc
     2641 gaataggatt ttaacgcaaa ttagcacact gatagcggtt tttacttgga atttggaaaa
     2701 aatttacatt ccttcgggcg gacaggcggg tttggatggc atcgtcaggc aaaaggcggc
     2761 gccggaagac gggtaaagaa ggggcgcgca atccggatta ttgattcatc gcgggtaaat
     2821 tccggttatc gggcttgtgt gtttgcgcgt ccgtttatag tatggcgttg ccgcagcttg
     2881 gaatcagggc ggttgtttca tatcttattt ttattgggga gcttttatga atatcaggtt
     2941 tttcgcgctg accgtaccgg ttttgtcttt ggcggcctgt gccgtgccgg aggcgtatga
     3001 tgacggcaga cgcgggtata tgccgcctgt tcaaaaccaa gccggcccga acgattttcg
     3061 ggcgttttca tgcgagaacg gtttgtctgt gcgcgtccgc cgtttggacg gtggcaaaat
     3121 cgcgttgcgg ctggacggca ggcgtgccgt cctctcttcc gacgttgccg catccggcga
     3181 acgctatacc gccgaacacg gtttgtttgg aaacggaacc gagtggcacc agaaaggcgg
     3241 cgaagccttt ttcggcttta ccgatgccta cggcaattcg gtcgaaactt cctgccgcgc
     3301 ccgttaaacg gggcagcctg tttgaaccgc cgtccggatt tttcgggcgg ttttttgtgt
     3361 cggatttgtt ttggctgtcg gctggtttcg gcggttttcg ggcgtggcgg attatttttc
     3421 gtttcgttcc gggtttatcc tatcggcagc ggctcaatgc caactttaaa cctgctccga
     3481 tttcttcagg gctgttatcc aatgataaaa tgacatcgtc tgcatcaatg gcatcccacg
     3541 cttccagctt gacatggcgg ctcgggctga ttttcaggca gccgttgtgc agccaaatat
     3601 ccccgctcat catgttttta aatagggcgc gtctggtttt atagcccaag ttcccgcata
     3661 gtttggcaac ccaatcctca tagcgttgcc gaaatttttc ggtatcaaaa aaatcttggt
     3721 cttccgaact gtcataaacg aaagtcctgc tgtttgccaa cgcttgcaag accgtcgtgc
     3781 ctaaagtttc attgtcggta tccaatggca ggatatgggg ggatataggt ggtctattgc
     3841 cgttaacccc aaacctgaac atgtttgaac aatcagagct tcttcattag cataaaaaac
     3901 tgcccaataa ttttgatcct gtttaaaaat tattatttga tctccgtaat tttg
//
LOCUS       DAXIFS010000168         3912 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.168, whole genome shotgun sequence.
ACCESSION   DAXIFS010000168 DAXIFS010000000
VERSION     DAXIFS010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.168"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            362..2143
                     /locus_tag="ACFOCA_001710"
     CDS             362..2143
                     /locus_tag="ACFOCA_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HFC6988384.1"
                     /translation="MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDSALQKGWQ
                     KGLHSVLFADYGFGLPLTGVESERGGNLALHWFADCADTDAENWLARHSDGLPAGIST
                     PQSSVSEADYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAV
                     LSHLPDAQGQSAWTLCFSPELFLKIGSDGTISTEPMKGTAPILGDGQDERRAAELQAD
                     PKNRAENVMIVDLLRNDLGKIAQTGTVCVPEPFKVSRFGSVWQMTSTIQAQALPHTSF
                     ADILRAAFPCGSITGAPKKMSMQIIESLEAEARGLYTGSIGYLNPCSGGLGFEGTFNV
                     VIRTLSLTPLSDGIYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETL
                     RVENGRCALLDRHLCRLKTSAQALNLPLPDGCENQIKQYIARLPDGAFRIKALLASDG
                     ISLSRAVLNRLTDKQRVIISPAVLPAQNYLRRFKTTCRALFDQAWQTAETQGAFDSLF
                     FNSDGILLEGGRSNVFVKHRGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETH
                     ITQKTLQEAEEIRLSNALRGVFAAALA"
     gene            complement(2202..3719)
                     /locus_tag="ACFOCA_001711"
     CDS             complement(2202..3719)
                     /locus_tag="ACFOCA_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6988385.1"
                     /translation="MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRSVSDK
                     WAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYD
                     AVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERH
                     FAEAEKLDLPAPVLENVGRFRKKAEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGS
                     QICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRA
                     YLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTY
                     RPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSSAKRLGESATVFGGWQFVRF
                     VPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGIAAFSTEA
                     QRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF"
BASE COUNT          937 a         1283 c          875 g          817 t
ORIGIN      
        1 caacgaagcc gaagacagta cagatagtac ggaaccgatt cacttggtgc ttcagcacct
       61 gagagaatcg ttctctttga gctaaagcga ggcaacgctg tactggtttt tgttaatcca
      121 ctatacttgg agctggtctt gcttttcgcc taattctacg ttttcaaacg gttgcagctg
      181 gtggtctgtc ataaaggtct ccttattgta tttcaggttg gaaatcggaa tttgttttca
      241 caattttaca ccttcgcccc ccactttctc tacataaaat tacattttgc cgatatttgc
      301 cgaatcgtct gaaaatatgt gtaaaaagag cgtataatca aaacatttgc cccgaattgc
      361 catgccttat ttcgccctgt ttgacgatgc cgtaagcggc cgcgcaaaac gctatcaaaa
      421 tcatgtggaa agccgttttt tccgtcccga agaactcgat gctttggaca gcgcgctgca
      481 aaagggctgg caaaaagggc tgcattcggt gttgtttgca gactacggat tcggtttgcc
      541 gctgacgggg gtcgagtccg aacgcggcgg caaccttgcc ctgcactggt ttgccgactg
      601 cgccgacacc gatgccgaaa actggcttgc ccgacattca gacggcctcc ccgccggcat
      661 ttccacgccg caatcctccg tatccgaagc cgattacctc gaccatatcc gccaaatcca
      721 cgaagccatc cggcgcggcg acacctatca aatcaactac accacccgcc tgcacctgca
      781 agcctacggc aatcccgtca gcctctaccg ccgcctgcgc cagcccgtcc cctatgccgt
      841 tttgtcccac ctgcccgatg cacaagggca atccgcgtgg acgctgtgtt tctcgcccga
      901 actcttcctc aaaatcggtt cggacggcac catcagcacc gaaccgatga aaggcaccgc
      961 gccgattttg ggcgacggac aagacgaacg ccgcgccgcc gagttgcaag cagacccgaa
     1021 aaaccgcgcc gaaaacgtga tgattgtcga tttgctgcgt aacgacctcg gcaaaatcgc
     1081 ccaaaccggc acagtatgcg tacccgaacc gtttaaagta tcgcgtttcg gcagcgtttg
     1141 gcagatgacc agcaccatcc aagcccaagc cttgccgcac acctcgttcg ccgacatcct
     1201 ccgcgccgcc ttcccctgcg gcagcatcac cggcgcgccc aaaaaaatga gtatgcagat
     1261 tatcgaatcg ctcgaagccg aagcgcgcgg actttatacg ggcagcatcg gctatttgaa
     1321 cccgtgttcc ggcggcttgg ggtttgaagg cacgttcaac gtcgttatcc gcaccttgtc
     1381 gctcacgccg ctttcagacg gcatttatca aggcgtgtac ggtgtcggtt ccggcatcgt
     1441 catcgacagc gaccctgccg ccgaatatcg ggaatgcggc tggaaagccc gtttcctcaa
     1501 cgaattgcgc cccgacttcg gcatttttga aaccctgcgc gtggaaaacg gacgctgcgc
     1561 cctgctcgac cgccacctat gccgtctgaa aacctccgcc caagccctca acctgcccct
     1621 gcccgacggt tgcgaaaatc aaatcaaaca atacatcgca cgcttgcccg acggcgcgtt
     1681 ccgcatcaaa gccctgctcg cttcagacgg catcagcctg tcccgcgccg ttttaaaccg
     1741 tctgaccgac aaacaacgcg tcatcatttc gcccgccgtc ctgcccgcac aaaactacct
     1801 gcgccgcttc aaaaccacct gccgcgccct cttcgaccaa gcgtggcaaa ccgccgaaac
     1861 acaaggcgcg ttcgacagcc tgtttttcaa ttcagacggc atcctgctcg aaggcggcag
     1921 aagcaacgtg ttcgtcaaac atcgcggaca atggctcacg ccctccttag atttagacat
     1981 tttaaacggc ataatgcgcc aagccgtatt ggacgaaccg caaaaatatt tgcaaacaaa
     2041 tcaagtaatc gaaacacaca tcacacaaaa aacactgcaa gaagccgaag aaatccgcct
     2101 ctccaacgcc ttgcgcggcg tatttgccgc cgcccttgcc tgaacgcgca aaaatgccgt
     2161 ccgaacctgt ttccaaagtt cggacggcat tatcccacca ttcaaaaccg ccaatccgcc
     2221 gacacaaaca cctcgctgtt gcggcgtttc gcatacggca cattactttc cgtcctgccg
     2281 aaacgataat tcaacgccgg cacgatacct ttgtacgaca acttgtcgtg gctcaaagcc
     2341 agcgagacat tccattcgcg gttgcgttgc gcctctgtcg agaaagccgc aatgccctta
     2401 tagttgcggc gggcataaga cgcagaaacc cgactgttca aaccgcccaa ctgccgccac
     2461 tcctgcgccc aaccggcata aacaccgttg cgccggtagg cggcattatt gaccgcgccg
     2521 cccaccgttt cgcgtttcgg cacaaaccgc acaaactgcc agccgccgaa cacagttgcc
     2581 gattcgccca aacgttttgc cgacgaaaca taaaacccgt cctgcctgcc gttattgtat
     2641 tccgccctat cctgttcgcg gtagcgttgg cggtaatgtt ccagcgcgac cgaaaattgc
     2701 catcccgggt ttgggcggta agtatgggac aactgcacgc cgactccgtg cgccagcata
     2761 tacggcggca ggcggcggtt gtttacccgt tttgttttcg catcaaagcc gtcgctgccc
     2821 gacaactgca cctgataaaa cggcaaaatc cccgccgtct gccgtgcatt tttatactgc
     2881 caacccaaat acgctctgcc gaacccgtcg tcataagctg attttttact gaaataatag
     2941 ctcgtgccgc cgatattgga acggaacaac aaataatgat tatctgccaa cgccgtcagt
     3001 ttttccgcct cgatttcata attcaagcct gccgcccgct ccgcccggct gacactgcat
     3061 atctgactgc ctccgttttg ccggcaatac tgcggcgcgg cattattggc atttctattg
     3121 accgccgggc tgataccgcc cgaaaaacgc cagcccgtca gcccctccgc ttttttccga
     3181 aaacgcccca cattttccaa aaccggcgcc ggcaaatcca atttttccgc ctcggcaaaa
     3241 tgcctttctg ccgacttcag ccggaaatcg tcaaactccg ccgccgccaa atccagcaaa
     3301 atccgctcgt ctgccgcatt ttccccgtgc agttcccgat accgcgccac cgcctccgcc
     3361 ggccttcccg ccaatttcgc cagcaaagcc cgcgccctgc cgtacaaaac cgcgtcataa
     3421 tccggcagct tggcatacaa atccgccaac gaagcgatta aatccgcctg attgccgttg
     3481 agcgcgtcgc gcaaactatg ttccaacatt ttcgggtgcg ccaacaaaaa atccccgtca
     3541 accacgcgcg gggcatcatt ttcaactttc caatccgatt ccgcccactt atccgacacc
     3601 gaccgctgca cctgcaacaa tgccttgtca tccaaaatcg cgggcgcatc cgccccatag
     3661 gcggcagaaa cacctgccgc acaccaaaca accaaaaaac cgtatctgaa atacaacata
     3721 ccctgtcatt tacctttctg gcaaacacgc cgccgaagca cgtcaaacca tccgaaaaac
     3781 aggcagaaac ccgtgaaaac cggctttgcc gtctgaaagc gggcaggcaa aaaaccgccg
     3841 cccgattttc aaagggcgga tttcacattt atagtggatt aacaaaaatc aggacaagac
     3901 gacgaagccg ca
//
LOCUS       DAXIFS010000169         3881 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.169, whole genome shotgun sequence.
ACCESSION   DAXIFS010000169 DAXIFS010000000
VERSION     DAXIFS010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3881
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.169"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            54..477
                     /locus_tag="ACFOCA_001712"
                     /pseudo
     CDS             54..477
                     /locus_tag="ACFOCA_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221878.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            583..1146
                     /gene="pgsA"
                     /locus_tag="ACFOCA_001713"
     CDS             583..1146
                     /gene="pgsA"
                     /locus_tag="ACFOCA_001713"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFC6988386.1"
                     /translation="MPWNLPIFLTWLRVLLIPVMTALFYLPFPWFAEETINLTAAVIF
                     AVAALTDWFDGFLARLWKQTSDFGAFLDPVADKLMVAVSLLLLVKLDRTYVLFAMIII
                     GREITISALREWMAQMGKRNSVAVATVGKFKTAAQMLAIFLLLLNIPDFYGFNLVVIG
                     NVLMFIASLLTVWSMLYYLKMAWKEIA"
     gene            1226..1301
                     /locus_tag="ACFOCA_001714"
     tRNA            1226..1301
                     /locus_tag="ACFOCA_001714"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1259..1261,aa:Gly,seq:gcc)
     gene            1327..1402
                     /locus_tag="ACFOCA_001715"
     tRNA            1327..1402
                     /locus_tag="ACFOCA_001715"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1360..1362,aa:Gly,seq:gcc)
     gene            1428..1501
                     /locus_tag="ACFOCA_001716"
     tRNA            1428..1501
                     /locus_tag="ACFOCA_001716"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1460..1462,aa:Cys,seq:gca)
     gene            1604..1693
                     /locus_tag="ACFOCA_001717"
     tRNA            1604..1693
                     /locus_tag="ACFOCA_001717"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1638..1640,aa:Leu,seq:taa)
     gene            1797..2849
                     /gene="sohB"
                     /locus_tag="ACFOCA_001718"
     CDS             1797..2849
                     /gene="sohB"
                     /locus_tag="ACFOCA_001718"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HFC6988387.1"
                     /translation="MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVL
                     TDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSSETQK
                     SRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
                     RRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKK
                     HDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEV
                     ATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEAS
                     VEKLFAKLVNRRADVM"
     gene            complement(2900..3763)
                     /locus_tag="ACFOCA_001719"
     CDS             complement(2900..3763)
                     /locus_tag="ACFOCA_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HFC6988388.1"
                     /translation="MENVETHSQNHRKRLIGTFFLVGLENLLMLVYPVFGGWAINAVI
                     AGQAWQALLYALVVLLMWLVGAARRIADTRTFTRIYTEIAVPVVLEQRQRQVPHSAVT
                     ARVALSREFVSFFEEHLPIAATSVVSIFGACIMLLVLEFWVGVSAVGILALFLWLLPR
                     FAAISENLYFRLKNSLERDNHFIRKGDERQLDRHYGLLARLRVLISNREAFGYLCVGT
                     AMGILFGFAFVMMTLKGYSSAGHVYSVGTYLWMFAMSLDDVPRLVEQYSNLKDIGQRI
                     EWSKRNIKAGT"
     gene            complement(3776..>3881)
                     /locus_tag="ACFOCA_001720"
     CDS             complement(3776..>3881)
                     /locus_tag="ACFOCA_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HFC6988389.1"
                     /translation="KVFATFGDKRTTRLFADLDALAEVMEKTISENKK"
BASE COUNT          982 a          922 c         1006 g          971 t
ORIGIN      
        1 ttaatccact atattatcgc tgggtatggt ttgccgccat aagctgtctg ctgttgtccg
       61 ccgtttttat tgcaccttac ctgacggcat ttcacgaaca agaaaaaaca ttcgaatatg
      121 cggaattgac cgttaccgcc cccaaccgca gcggacgggc aatcaaactg gatgcagacg
      181 ggcagcatta ccggctttcc tgctatgggt tcgacagttt gtgcacaggc ggcaatatcg
      241 gcagaaccat cagggcggag caggttagag ccgttttaag cgaaaccgtc ggcaaaggtt
      301 ttttaaacgg cgttctgttg gaataccgca acagtggcag tgtctataag caataaagat
      361 tttgcccgca cggaagaccg ccttgtcgaa gtgttggcac aacctgccgt tttctgcctg
      421 aaactgggta ttttgctttt attgcccgcc attttcctgc gtttgaaaag aatgtgaaaa
      481 cagattggcg gggcggggga atgcccatgc agcaatttta cgttttgggt tatgaggata
      541 accgttataa tcacaacttt acagtctgca cagagaaaac cgatgccttg gaatctccct
      601 atcttcctca catggttgag ggtcttgctc attcctgtca tgacagccct tttttacctg
      661 ccttttccgt ggttcgcgga ggaaacgatt aatctcaccg ccgccgtcat ttttgccgtt
      721 gccgccttaa ccgactggtt tgacggattt ttggcaagac tgtggaaaca gacttccgat
      781 ttcggcgcct tcctcgatcc cgtcgccgac aagctgatgg ttgccgtatc gctactttta
      841 ctggtcaaac tcgaccggac ctatgttttg tttgccatga tcattatcgg cagggaaatt
      901 accatttccg cattgcgcga atggatggcg caaatgggca aaaggaacag cgttgccgtc
      961 gccaccgtcg gtaagttcaa aaccgccgcg caaatgctgg caattttcct gctgctgctg
     1021 aatattcccg atttttacgg atttaatctt gttgttatcg gcaatgtatt gatgtttatc
     1081 gcatctttgc tgacagtctg gtcgatgctg tattatctga aaatggcgtg gaaagaaatc
     1141 gcctgaaaaa aacataaaaa tagcttgacg gcaaaaacag aatccataat aattgcgtct
     1201 cttcgatgtt ggagaatgaa atcgggcggg aatagctcag ttggtagagc gcaaccttgc
     1261 caaggttgag gtcgcgagtt cgagactcgt ttcccgctcc aaaaatttca ttttcccaca
     1321 atcattgcgg gaatagctca gttggtagag cgcaaccttg ccaaggttga ggtcgcgagt
     1381 tcgagactcg tttcccgctc caagtttttt agataagcca gttttagggc gagatagcaa
     1441 agtggttatg cagcggattg caaatccgtc tacgccggtt cgattccgac tctcgcctcc
     1501 attatcgtac tacggcgggg tggcagagtg tttatgctat gaggagtgca atcttcatat
     1561 aggccggtta aaatccgcgc ccccgcctcc acctttcaca aatgcccggg tggtgaaata
     1621 ggtagacaca acggacttaa aatccgtcgg gactaaacat cccgtgccgg ttcgattccg
     1681 gctccgggca ccaagctgaa aatgacaatg ccgctccaag cggttatttt tttatctgtc
     1741 ggacggtgat ggacaatatt gacatgttca tgcctgaaca agaggaaatc caatcaatgt
     1801 ggaaagaaat tttactgaat tacggtattt tcctgctcga actgcttacc gtgttcggcg
     1861 caattgcgct gattgtgttg gctatcgtac agagtaagaa acagtcggaa agcggcagtg
     1921 tcgtactgac ggatttttcg gaaaattata aaaaacagcg gcaatcgttt gaagcattct
     1981 ttttaagcgg ggaagaggca aaacatcagg aaaaagagga aaagaaaaag gaaaaggcgg
     2041 aagccaaagc agagaaaaag cgtttgaagg agggtgggga gaaatcttcc gaaacgcaaa
     2101 aatcccgcct ttttgtgttg gattttgacg gcgatttgta tgcacacgcc gtagaatcct
     2161 tgcgtcatga gattacggcg gtgcttttga ttgccaagcc tgaagatgag gttctgctta
     2221 gattggaaag tccgggcggc gtggttcacg gttacggttt ggcggcttcg cagcttaggc
     2281 gtttgcgcga acgcaatatt ccgctgaccg tcgccgtcga taaggtggcg gcgagcggtg
     2341 gttatatgat ggcgtgtgtg gcggataaaa ttgtttccgc tccgtttgcg attgtcggtt
     2401 cggtgggtgt tgtagcggaa gtaccgaata tccaccgcct gttgaaaaaa catgatattg
     2461 atgtggatgt gatgacggcg ggcgaattta agcgcacggt tacttttatg ggtgaaaata
     2521 cggaaaaggg caaacagaaa ttccgacagg aactggagga aacgcatcag ttgttcaagc
     2581 agtttgtcag cgagaaccgc cctcaattgg atattgagga agtggcaacg ggcgagcatt
     2641 ggttcggtcg gcaggcgttg gcgttgaact tgattgacga gatttcgacc agtgatgatt
     2701 tgttgttgaa agcgtttgaa aacaaacagg ttatcgaagt gaaatatcag gagaagcaaa
     2761 gcctgatcca gcgcattggt ttgcaggcgg aagcttctgt tgaaaagttg tttgccaaac
     2821 ttgtcaaccg gcgggcggat gtgatgtagt ttgccgaacg gatggaaatg ccgtctgaag
     2881 cgtgttcaga cggcattttt caagttccgg ctttgatgtt ccgtttcgac cactctatcc
     2941 gttgtccgat gtctttcaaa ttggaatatt gttcgaccaa tcgcggcacg tcgtccaaac
     3001 tcatggcaaa catccacaga taagtgccga ccgaatagac atgccccgcg ctgctgtagc
     3061 ctttgagcgt catcatcaca aaagcaaagc cgaacaaaat acccatcgcc gtgccgacgc
     3121 agagatagcc gaaggcttcg cggttggaaa tcagcacacg caggcgcgca agcagtccgt
     3181 aatggcggtc cagctgccgc tcgtcgcctt ttcggataaa gtggttgtcg cgttccaagc
     3241 tgttcttcag gcggaaatac aggttttcgc tgatggcggc aaaacgtggc aaaagccata
     3301 aaaacaacgc aagtatgccc accgccgaca cgccgaccca aaattccagc accagcagca
     3361 tgatgcacgc gccgaatatg gatacgacgg atgtcgcggc aatcggcagg tgttcttcaa
     3421 aaaagctgac aaactcacgc gacagggcaa cccgcgcagt taccgccgaa tgcgggactt
     3481 gccgctgccg ctgttccaac acaaccggca cggcgatttc ggtataaatc cgcgtaaacg
     3541 tgcgcgtatc ggcaatccgc cgcgccgcac cgaccagcca catcaaaagc acaaccaaag
     3601 cgtacagcaa cgcctgccac gcctgccccg caatcacggc attaatcgcc cagccgccaa
     3661 acaccggata caccagcatc aaaaggtttt ccagtccgac cagaaaaaat gtgccaatca
     3721 atcgcttgcg gtggttttgg ctatgtgttt caacattttc cacatatttg cccccctatt
     3781 ttttattttc cgagattgtt ttttccatca cttcagccag tgcatccaaa tcggcaaaca
     3841 gccgggttgt gcgcttgtcg ccgaatgtgg caaatacttt g
//
LOCUS       DAXIFS010000170         3861 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.170, whole genome shotgun sequence.
ACCESSION   DAXIFS010000170 DAXIFS010000000
VERSION     DAXIFS010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.170"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            490..1446
                     /gene="thiL"
                     /locus_tag="ACFOCA_001721"
     CDS             490..1446
                     /gene="thiL"
                     /locus_tag="ACFOCA_001721"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFC6988390.1"
                     /translation="MKEFDFIKRYLQTGTDKDVVLGIGDDAAIVRPREGFDLCFSADM
                     LLKDRHFFADVKPEDLAWKVLAVNISDMAAMGAIPRWVLLSAALPELDEVWLERFCGS
                     FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRVGMA
                     AAALNCRLKRCVLPDDVFAECEQKLLRPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
                     ILTASGVGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLD
                     AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
     gene            1439..1924
                     /locus_tag="ACFOCA_001722"
     CDS             1439..1924
                     /locus_tag="ACFOCA_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFC6988391.1"
                     /translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
                     FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
                     PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
                     F"
     gene            complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFOCA_001723"
     CDS             complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFOCA_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HFC6988392.1"
                     /translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
                     GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
                     KRLEEVYAEYANPDADFDALAEEQGRLEAIIAAGSSTGGGAEHELEIAADALRLPEWD
                     AKIDNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
                     THDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
                     EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
                     SFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKSTLFKMIAGKEQPDSGEVKIGQTVKMS
                     LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKITGQLSG
                     GERGRLHLAKTLLGGGNVLLLDEPSNDLDVGTLRALEDALLEFAGSVMVISHDRWFLD
                     RIATHILACEGDSKWVFFDGNYQEYEADKKRRLGEEGTKPKRIKYKPVTR"
BASE COUNT          784 a          943 c         1079 g         1055 t
ORIGIN      
        1 gaggcaacgc tgtactggtt taaatttaat ccactatatc ggttgaaact ctgattttaa
       61 ggcggtagga tgtgggtttg cccatagaaa gggaatcctt tctgtatcaa gccctgaaag
      121 ggataattca tacaaattca cgcctttccc cttcattggg aaatggatgg aatcgtgcca
      181 gatgtgtgcg gcactgtatg ccggatatgg ttttatcatc agcccttttc ggttgaaacc
      241 ccgtcagttg cagcgattga gcctaatcgg tggcggaagt tgccgctttg cattcggggt
      301 ggcgtgcagt gcggtgcttt gatatgccgt ttgtgtgttg aaacagggtg gtcggtgcat
      361 acgggtacgg tatggccaaa gctaaaagtg aaatacgctg aaacactgaa tgagccgctt
      421 tattgtttgt acggcctttg ctgccttgct atgatttaaa ttggattcgc ccgccggata
      481 ttttgggata tgaaagaatt tgacttcatc aaacggtatt tgcaaacagg cacggataag
      541 gatgtcgtat tgggcatagg cgacgatgcg gcgattgtcc gcccgcgtga aggcttcgat
      601 ttgtgtttca gtgcggatat gcttttgaag gacaggcatt tttttgccga tgtcaaacct
      661 gaggacttgg cttggaaggt tttggccgtc aatatttcag atatggcggc gatgggcgcg
      721 ataccgcgtt gggtgttgtt aagtgcggct ttgcccgaat tggatgaggt atggctggaa
      781 cggttttgcg gcagcttttt cggtttggca aaaaagtttg gcgtaacgtt aatcggcggc
      841 gatacgacca agggcgatat ggcgttcaat gtaaccatta tcggcgaatt gccgaagggt
      901 agggcattgc ggcgtgatgc ggcggttgcg ggcgacgata tttgggtgtc ggggcgtgtc
      961 ggtatggcgg cggcggcttt gaactgccgt ctgaaacggt gtgtgttgcc ggatgatgtg
     1021 tttgccgaat gcgaacaaaa gctgctccgc cccgagccaa gggttgggct ggggcttgcg
     1081 ctgttgccgt ttgcccgggc ggcgcaggat gtttcagacg gcctcgcgca agatttgggg
     1141 catatcctga ccgcttccgg cgtgggggcg gaaatttggg ccgattcgct gccgtcttta
     1201 tccgtattga aagatatttt gccccgagcg caatggctgt cttatacttt ggcgggcggc
     1261 gacgattacg agctggtgtt taccgcgccg gaaagttgcc gcagccgcgt gcttgatgcg
     1321 gcagaacggt gcggcgtgcc ggtaacgcgc atcggcaaaa tcaacggagg atgccgtctg
     1381 aaggttttag atgccgacgg cagggaattg gaactacatt ctttaggatt cgatcatttt
     1441 ggctgatttt aaacctgact ttgcgtggct gttgaaacga ccgttgtgtt ttttggcttt
     1501 tggtttcggc agcgggctgg ctccgttcgc gccgggtaca tttggcactt tggcggcact
     1561 gcctttggca tttgtgctga ttttgctcgg catagacggg ctgctgctgg cttttttgtg
     1621 tatcgtgctg tttatgtggg gcatacgcat ttgcgcttat gcggaacgtg aaacgggtgt
     1681 cagcgaccat ggtgggattg tttgggacga gattgtcgcc atgctgtttg tgctggcgtt
     1741 tgtgccgttc aggtggacgt ggtggctggc ggcatttgtc ctattccgtc tgtttgacgc
     1801 gctcaaaccg tctcccgtcg gttggtttga caagaatctg cacggcggtt tgggcattat
     1861 ggcggacgat atggcggctg cggtgatgac tttgattgtc ttgaggattg caatgctgtt
     1921 ttaaacggtg ctgccttgta aaaatgccgt ctgaaagcct ttcagacggc attgtttcgg
     1981 aggttaacgc gttaccggtt tgtatttgat gcgtttcggt ttcgtgcctt cttcgccgag
     2041 tcggcgtttc ttgtcggctt cgtattcctg atagttgccg tcaaagaaca cccatttgga
     2101 gtcgccttcg caagccaaga tatgcgtagc aatacggtcg aggaaccagc ggtcgtgcga
     2161 aatcaccatc acgctgccgg caaattccag caatgcgtct tccaacgcgc gcagggttcc
     2221 cacgtcgagg tcgttggacg gttcgtccag cagcaacaca ttgccaccgc ccaacaaggt
     2281 ttttgccaag tgcaaacgtc cgcgttcgcc gccggaaagc tgccccgtga ttttgctttg
     2341 gtcgctgcct ttgaaattga agcgtcccaa atattggcgg gcggggattt caaactgccc
     2401 gacctgtaaa atatcgcgac cttcggcaat gttgtcgaac acggttttgt cgttttgcaa
     2461 accttcgcgg ctttggtcaa tcaagctcat tttcacggtt tgcccgattt tcacttcacc
     2521 agaatcgggc tgctctttgc ccgcaatcat tttaaacagt gtcgatttac ccgcgccgtt
     2581 cggaccgatg atgccgacaa tcgcgcccgc aggcactttg aagctcaaat cgtcaatcag
     2641 cactttgtcg ccgaacgatt tggaaacatt cacaaattca atcacttcgt tacccaaacg
     2701 ctcggcgacg ggaatgaaga tttcctgcgt ttcattgcgt ttttggtatt cgtagttgct
     2761 catttcttca aaacgagcca aacgcgcttt ggacttggct tggcggcctt tggcattttg
     2821 gcgcacccat tccaattcct gcttcatcgc cttcacgcgc gcggcttcgg attttgcctc
     2881 gttttccaag cgtttttctt tctgctccag ccaagacgag taattgcctt tccacggaat
     2941 accatggccg cggtcgagtt ccaaaatcca ttcggcggcg ttgtcgagga agtagcggtc
     3001 gtgtgttacc gcaacgactg taccggggaa gcgcacgaga aattgctcca gccactcgac
     3061 agattccgcg tccaagtggt tggtcggctc gtccagcaaa agcatatcgg gtttgctcaa
     3121 caagagtttg cacaaggcaa cgcggcgttt ttcaccgccg gacaaattat cgattttggc
     3181 atcccattcc ggcaggcgca gcgcgtcggc ggcgatttcc aattcgtgtt ccgcaccgcc
     3241 gcccgtggac gaacctgccg caataatcgc ttccaagcgg ccctgctctt ctgccaacgc
     3301 gtcaaaatcc gcatcaggat tggcgtactc ggcatacact tcttccaaac gtttctgcgc
     3361 ggcagccact tcgcccaaac cgctttccac ttcctcgcgc acggtttttt caggatcaag
     3421 ctcaggctct tgcggcaggt agccgatttt aatgccgccc atcggcacgg cttcgccctc
     3481 aaattcctta tccacacccg ccataatccg cagcacggtg gacttgcccg cgccgttcaa
     3541 accgagcagg ccgattttcg cgccggggaa gaaagaaagg gaaatatctt taatgatggt
     3601 tttctgcggc ggcacaacct tgcttacgcg cagcatagaa tagacgtatt gttgggacat
     3661 ggttttctcg ttttcatcaa acaaatttca gacggccatt ttaaccgata atttgattta
     3721 agccagttta tccgcgaacc ggtattgcca aaatcgggca ggattcataa aatccgccta
     3781 tccctttgaa attatacaga caaaaaaaat aataatgata ggagatcgcc gcaccggcaa
     3841 ccatttcgga ttttccaaag c
//
LOCUS       DAXIFS010000171         3853 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.171, whole genome shotgun sequence.
ACCESSION   DAXIFS010000171 DAXIFS010000000
VERSION     DAXIFS010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3853
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.171"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..419
                     /locus_tag="ACFOCA_001724"
     CDS             <1..419
                     /locus_tag="ACFOCA_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HFC6988393.1"
                     /translation="EAEWAGSLFGLHKSFGFLTLTVITLRIVWAVANRAKRPQSDSKA
                     AAAGHGILYLLMLAVPVIGMIRQYGSGRGPLKVFGVEVMQGSPEKIEWMANLGNTFHG
                     NLGWLLFAAVVGHVAMVVVHRVQGKDVLYRMTGRVR"
     gene            complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFOCA_001725"
     CDS             complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFOCA_001725"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFC6988394.1"
                     /translation="MFQKHLQKASDSVVGGTLYVVATPIGNLADITLRALAVLQKADI
                     ICAEDTRVTAQLLSAYGIQGKLVSVREHNERQMADKIVGYLSDGMVVAQVSDAGTPAV
                     CDPGAKLARRVREVGFKVVPVVGASAVMAALSVAGVAGSDFYFNGFVPPKSGERRKLF
                     AKWVRAAFPVVMFETPHRIGATLADMAELFSERRLMLAREITKTFETFLSGTVGEIQT
                     ALSADGNQSRGEMVLVLYPAQDEKHEGLSESAQNIMKILTAELPTKQAAELAAKITGE
                     GKKALYNLALSWKNK"
     gene            1376..1723
                     /locus_tag="ACFOCA_001726"
     CDS             1376..1723
                     /locus_tag="ACFOCA_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFC6988395.1"
                     /translation="MRLNHKQGEAGEDAALAFLQSQGCTLLARNWHCAYGEIDLIVKN
                     GGMILFVEVKYRKNRQFGGAAYSISPSKLLKLQRSVEYYLQQNRLTNVPCRLDAVLIE
                     GSRPPEWIQNITG"
     gene            1728..2321
                     /locus_tag="ACFOCA_001727"
     CDS             1728..2321
                     /locus_tag="ACFOCA_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HFC6988396.1"
                     /translation="MTTLQERVAAHFAESIRAKQEAGKVLVEPTVQAAELMLQCLMND
                     GKILACGNGGSAADAQHFAAEMTGRFEKERMELAAVALTTDTSALTAIGNDYGFNHVF
                     SKQVRALGRAGDILVGISTSGNSANVIEAIKAAHERDMHVIALTGRDGGKIAAILKDT
                     DVLLNVPHPRTARIQENHILLIHAICDCIDSVLLEGM"
     gene            2385..2993
                     /locus_tag="ACFOCA_001728"
     CDS             2385..2993
                     /locus_tag="ACFOCA_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HFC6988397.1"
                     /translation="MKPKPHTVRTLIAAIFSLALSGCVSAVIGSAAVGAKSAVDRRTT
                     GAQTDDNVMALRIETTARSYLRQNNQTKGYTPQISVVGYNRHLLLLGQVATEGEKQFV
                     GQIARSEQAAEGVYNYITVASLPRTAGDIAGDTWNTSKVRATLLGISPATQARVKIVT
                     YGNVTYVMGILTPEEQAQITQKVSTTVGVQKVITLYQNYVQR"
     gene            3001..3651
                     /locus_tag="ACFOCA_001729"
     CDS             3001..3651
                     /locus_tag="ACFOCA_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988398.1"
                     /translation="MPSEPPSDGIARHPKSTIKMAKKPNKPFRLTPKLLIRAVLLICI
                     TAIGALAIGIVSTFNPNGDKTLQAEPQHTDSPRETEFWLPNGVVGQDAAQPEHHHAAS
                     SEPAQPDGTDESGSGLPSPAAPKKNRVKPQPADTAQTDRQPDDAGTQAENTLKETPVL
                     PTNVPRPEPRKETPEKQAQPKETPKEKETPKENHTKPDTPKNTPPKPHKEILDNLF"
     gene            3691..>3853
                     /locus_tag="ACFOCA_001730"
     CDS             3691..>3853
                     /locus_tag="ACFOCA_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6988399.1"
                     /translation="MNGIIIKTPEEIEKMRELGKLVAEALDYIGQFVKPGVTTDEIDK
                     LVYDYHVNVQ"
BASE COUNT          985 a         1270 c          935 g          663 t
ORIGIN      
        1 aagaggcgga atgggcgggc agcctgttcg gcctgcacaa atctttcggc ttcctcacgc
       61 tgacggtgat tacattgcgc atcgtgtggg cagttgccaa ccgcgccaag cgtccgcaaa
      121 gcgacagcaa ggctgcggcg gcaggacacg gcattctgta tctgctcatg cttgccgttc
      181 ccgttatcgg catgatccgc caatacggca gcggccgcgg cccgttgaaa gtgttcggcg
      241 ttgaggtgat gcagggttcg ccggaaaaaa tcgagtggat ggcaaacttg ggcaacacgt
      301 tccacggcaa tttgggctgg ctgctgtttg ccgccgtcgt cggacacgtc gccatggtcg
      361 tcgtccaccg tgttcaaggc aaagacgtgc tgtaccgcat gacggggcgt gtccgttgat
      421 tccgttcgca ctatggtgcc ggtccgtccg gcatcatttg tttttccaag acagtgccag
      481 attgtacaaa gctttttttc cctcgcccgt gattttggcg gcaagctccg ccgcctgttt
      541 ggtcggcagc tcggctgtga ggattttcat gatgttttgc gcggactcgg acaagccttc
      601 gtgtttttca tcctgcgccg gataaagcac caacaccatc tcaccgcgcg attggttgcc
      661 gtcggcagac aatgccgtct gaatttcccc aaccgtgccg cttaagaacg tttcaaacgt
      721 tttcgtaatt tcgcgcgcca gcattaatcg gcgttcggag aacagttccg ccatatcggc
      781 aagcgtcgca ccgatgcggt gcggcgtttc aaacatcacg acgggaaacg ccgcccgcac
      841 ccatttggca aacagtttcc tgcgctctcc cgatttcggc ggtacaaaac cgttgaaata
      901 aaaatcggat cccgccacac cggccacact caaagccgcc atcaccgcgc ttgcgccgac
      961 aacagggaca actttaaacc cgacctcacg cacgcggcgg gcgagtttcg cgcccgggtc
     1021 gcacacggcc ggcgtacccg catcggaaac ctgtgccaca accatgccgt ctgaaagata
     1081 gccgacaatc ttgtccgcca tctgccgttc gttgtgttcg cgcacgctga caagtttgcc
     1141 ctgaatgccg tacgcgctca aaagctgcgc ggtaacgcgc gtgtcttcgg cacagatgat
     1201 gtccgccttt tgcaataccg ccaaagcgcg cagggtaatg tccgccaaat tgccgatggg
     1261 cgtggcaacc acgtataatg tccctccgac gacgctgtcg gaggctttct gcaagtgttt
     1321 ctgaaacata aaaaatgccg tctgaaaaac agacattata aaggttaaac cgattatgcg
     1381 cctaaaccac aaacagggcg aggcagggga agatgccgcg cttgccttcc tccaatccca
     1441 aggctgcaca ctgcttgccc gcaactggca ctgcgcctac ggcgaaatcg acctgattgt
     1501 caaaaacggc ggcatgattc tgtttgttga agtaaaatac cgcaaaaatc ggcaattcgg
     1561 cggtgccgca tacagcattt ccccatccaa attattgaaa ctgcaacgaa gtgtagagta
     1621 ttatctgcaa cagaacaggt tgacaaacgt accgtgccgc ctcgacgcgg tactcatcga
     1681 aggcagccgc ccgcccgagt ggatacagaa tattacaggt tgacgatatg acgacattac
     1741 aagaacgcgt tgccgcccat tttgccgaaa gcatccgtgc caagcaggaa gccggaaaag
     1801 tattggtcga gccgaccgta caggctgccg agctgatgct gcaatgcctg atgaacgacg
     1861 gcaagattct ggcgtgcggc aacggcggtt cggctgccga cgcgcagcac ttcgccgccg
     1921 aaatgaccgg acgctttgaa aaagagcgca tggaactcgc cgccgtcgcc ctgaccacag
     1981 acacctccgc gctgaccgcc atcggtaacg actacggctt caaccacgtc ttcagcaaac
     2041 aggtacgcgc cctcggacgc gccggcgaca tcctcgtcgg catttccact tccggcaatt
     2101 ccgccaacgt catcgaagcc attaaagcgg cacacgaacg cgatatgcac gtcatcgccc
     2161 tgaccggccg cgacggcggc aaaatcgccg ccatactcaa agacaccgac gttctgctca
     2221 acgtccccca tccgcgcacc gcccgcattc aggaaaacca catcctgctg atacacgcca
     2281 tatgcgactg tatcgactcc gtactgctgg aaggaatgta acccttttca gacggcatgg
     2341 cgcaaagcaa tgccgtctga aacgcccaag aaaggaagcc cccgatgaaa cccaaaccgc
     2401 acaccgtccg caccctgatt gccgccattt tcagccttgc ccttagcggc tgcgtcagcg
     2461 cagtaatcgg aagcgccgcc gtcggcgcga aatccgccgt cgaccgccga accaccggcg
     2521 cgcaaaccga cgacaacgtt atggcgttgc gtatcgaaac caccgcccgc tcctatctgc
     2581 gccaaaacaa ccaaaccaaa ggctacacgc cccaaatctc tgttgtcggc tacaaccgcc
     2641 acctgctgct gctcggacaa gtcgccaccg aaggcgagaa acagttcgtc ggtcagattg
     2701 cacgttccga acaggccgcc gaaggcgtat acaactacat taccgtcgcc tccctgccgc
     2761 gcactgccgg cgacatcgcc ggcgacactt ggaacacatc caaagtccgc gccacgctgt
     2821 tgggcatcag ccccgccaca caggcgcgcg tcaaaatcgt tacctacggc aacgtaacct
     2881 acgttatggg catcctcacc cccgaagaac aggcgcagat tacccaaaaa gtcagcacca
     2941 ccgtcggcgt acaaaaagtc atcaccctct accaaaacta cgtccaacgc tgactcggca
     3001 atgccgtctg aaccgccttc agacggcatt gcccgacacc ccaaaagcac aatcaaaatg
     3061 gcaaaaaaac cgaacaaacc cttcaggctg acccccaaac tcctgatacg cgccgtattg
     3121 ctcatctgta tcaccgccat cggcgcattg gcaataggca tcgtcagcac attcaacccg
     3181 aacggcgaca aaacccttca agccgaaccg caacacaccg acagcccccg cgaaaccgaa
     3241 ttctggctgc caaacggcgt agtcggacaa gatgccgccc aacccgaaca ccaccacgcc
     3301 gcctcatccg aacccgcaca gccggacggc acagacgaaa gcggcagcgg actgccgtcc
     3361 cctgccgcac ccaagaaaaa ccgggtcaaa ccgcaacctg ccgacacagc tcaaaccgac
     3421 aggcagccgg acgacgccgg aacacaagct gaaaacacac tcaaagaaac ccccgtactg
     3481 cccacaaacg tcccccgtcc cgaaccccga aaagaaacac ccgaaaaaca ggcgcagccc
     3541 aaagaaacac ccaaagaaaa agaaacgccc aaagaaaacc ataccaaacc ggacaccccg
     3601 aaaaacacgc cgcccaaacc ccataaagaa attctcgaca acctcttctg acccggcacg
     3661 gcaggcacac ccgcaatcca aggaagcatt atgaacggca tcatcatcaa aacccccgaa
     3721 gaaatcgaaa aaatgcgcga gctgggcaaa ctcgtcgccg aagccctcga ctacatcgga
     3781 caattcgtca aacccggcgt aaccaccgac gaaatcgaca aactcgttta cgactaccac
     3841 gtcaacgtcc aag
//
LOCUS       DAXIFS010000172         3827 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.172, whole genome shotgun sequence.
ACCESSION   DAXIFS010000172 DAXIFS010000000
VERSION     DAXIFS010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.172"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            98..1123
                     /gene="hupA"
                     /locus_tag="ACFOCA_001731"
     CDS             98..1123
                     /gene="hupA"
                     /locus_tag="ACFOCA_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemoglobin-haptoglobin-utilization protein HupA"
                     /protein_id="HFC6988400.1"
                     /translation="MKYKALSLLPLAAALAACAGGGVAEPHIPVSIPTATPLPTGEVK
                     LSDDNSKIENINTAGTGSTSGISIQQREVEKEPFPGYKTKETSFIFQTPGGAQYALSS
                     YADPITVSYSSPDFKIPDRHAGQRLADGSRIFICCSESGATSYAEITKQDYMKFGAWI
                     GPNGEIDLFAGGFPVGKTPKPAYSWSDDTPETQGKGKITYQVWGIRVKDGQFVTSSYT
                     PPKGSSFTGYTNTPVLSFITANFNSNKLAGEIRGNSDYGLSVKIENATIDGLSFSGDA
                     TSGGKNGKLEGKFFGKFNSTRSSDTGIGGKITFKDDRSLDTVFGGVIYEKKLDDKTSQ
                     DTNHLKK"
     gene            1154..3580
                     /gene="hupB"
                     /locus_tag="ACFOCA_001732"
     CDS             1154..3580
                     /gene="hupB"
                     /locus_tag="ACFOCA_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemoglobin-haptoglobin-utilization protein HupB"
                     /protein_id="HFC6988401.1"
                     /translation="MPIPFKPVLAAAAIAQAFPAFAADPAPQSAQTLNEITVTGTHKT
                     QKLGEEKIRRKTLDKLLVNDEHDLVRYDPGISVVEGGRAGSNGFTIRGVDKDRVAINV
                     DGLAQAESRSSEAFQELFGAYGNFNTNRNTSEPENFSEVTITKGADSLKSGSGALGGA
                     VNYQTKSASDYVSEDKPYHLGIKGGSVGKNSQKFSSITAAGRLFGLDALLVYTRRFGK
                     ETKNRSTEGDVKIENKGYVFSPTQSFNKYQTYVATGVARSQPDPQEWVNKSTLFKLGY
                     NFNDRNRIGWIFEDSRTDRFTNELSNLWTGTIYSPATGDYRHRQDVSYRRRSGVEYKN
                     ELEHGPWDSLKLRYDKQRIDMNTWTWDIPKNYDLRGINSEVYHSFRHIRQNTAQWTAD
                     FEKQLDFSKAVWAAQYGLGGGRGDNANSDYSYFVKLYDPKILTSNQAKITMLIENRSK
                     YKFAYWNNVFHLGGNDRFRLNAGIRYDKNSSSAKDDPKYTTAIRGQIPHLGSERAHAG
                     FSYGTGFDWRFTKHLHLLAKYSTGFRAPTSDETWLLFPHPDFYLKANPNLKAEKAKNW
                     ELGLAGSGKAGNFKLSGFKTKYRDFIELTYMGVSSDNPNKPTYAPLSDGTALVSSPVW
                     QNQNRTAAWVKGIEFNGTWNLDSIGLPKGLHTGLNVSYIKGKATQNNGKETPINALSP
                     WTAVYSLGYDAPSKRWGINAYATRTAAKKPSDTVHSNDDLNNPWPYAKHSKAYTLFDL
                     SAYLNIGKQVTLRAAAYNITNKQYYTWESLRSIREFGTVNRVDNKTHAGIQRFTSPGR
                     SYNFTIEAKF"
BASE COUNT         1051 a         1189 c          877 g          710 t
ORIGIN      
        1 cgatttttgc accgacccac aaaaccagtt gacatcatat aacatttaaa ctgataatca
       61 aaactattat taacacatca tcaagattga gtatgcgatg aaatacaaag ccctgtcctt
      121 actgccgctt gccgccgccc ttgccgcctg tgcagggggg ggggtagccg aaccgcacat
      181 ccccgtgtcc atccccaccg ccaccccgct gcccaccggc gaggtaaagt tatcagacga
      241 caatagcaaa atcgaaaaca tcaacaccgc cggcacagga agcacatccg gtatttccat
      301 tcagcagcgg gaagtagaaa aagaaccttt ccccggctac aaaaccaaag aaacatcatt
      361 catcttccaa acacccggcg gcgcgcaata cgccctttca tcctacgccg accccataac
      421 cgtcagctac tcctcccccg atttcaaaat tcccgaccgc cacgcagggc agcggcttgc
      481 cgacggcagc cgcatcttta tctgttgcag cgaatccggg gctacttcgt atgcggaaat
      541 caccaaacaa gattatatga aattcggggc gtggataggt cccaacggcg aaatcgacct
      601 cttcgccggc ggcttccccg tcggcaaaac gccgaaaccg gcatactcct ggagcgacga
      661 cacgcccgaa acccaaggca aaggcaaaat cacttatcag gtttggggca tccgcgtcaa
      721 agacgggcaa tttgttacct cctcttatac gccgcccaaa ggcagctctt ttaccggcta
      781 caccaacacc cccgtccttt cctttatcac cgccaatttc aacagcaaca aactggcagg
      841 cgaaatccgc ggcaacagcg attacggact gagtgtgaaa attgaaaacg caacgattga
      901 cggactatcc ttttccggcg atgccacgtc cggcggcaaa aacggcaaat tggaaggcaa
      961 gttttttggc aagttcaaca gcacccgcag cagcgacacc ggcataggcg gcaaaatcac
     1021 ttttaaagac gaccgctccc tcgataccgt attcggcggc gtgatttatg agaaaaaact
     1081 tgatgacaaa accagtcaag ataccaacca tctcaaaaaa taataaccca tccgctttta
     1141 aaaaggtttt cttatgccca tcccctttaa acccgtattg gctgccgccg ccatcgccca
     1201 agcgtttccc gcctttgcgg cagaccccgc gccgcagtcc gcccaaacgc tgaacgaaat
     1261 caccgttacc ggcacgcaca aaacccaaaa actcggcgaa gaaaaaatcc gccgcaaaac
     1321 tttagacaag ctcttggtca acgacgaaca cgacctggtg cgctacgacc ccggcatttc
     1381 cgtcgtcgaa ggcggcaggg cgggttctaa cggctttacc atacgcggcg tggacaaaga
     1441 ccgcgtcgcc atcaacgttg acgggctggc gcaggcggaa agccgctctt ccgaagcctt
     1501 ccaagagttg ttcggcgcgt acggcaactt caacaccaac cgcaacacct ccgagccgga
     1561 aaacttttcc gaagtaacca tcaccaaagg cgcggactcg cttaaatccg gcagcggcgc
     1621 attgggcggc gcagtcaatt accaaaccaa atccgcaagc gattatgttt ccgaagacaa
     1681 gccctaccat ttggggataa agggcggcag cgtcggcaaa aacagccaaa aattcagcag
     1741 catcaccgcc gccggcaggc tctttggttt ggatgcctta ttggtttata cccgccgctt
     1801 cggcaaagaa accaaaaacc gctcgaccga gggcgatgtc aaaattgaaa acaagggata
     1861 tgttttcagc ccaacccaat cattcaacaa gtaccagacc tacgtagcca caggggttgc
     1921 gcgctcccaa cccgacccgc aagaatgggt aaacaaaagc accttgttca agctgggcta
     1981 caatttcaac gaccgcaacc gcatcggctg gatttttgaa gactcccgca ccgaccgttt
     2041 taccaacgag ctgtctaatt tgtggacggg tacaatttac tctcccgcaa cgggcgacta
     2101 ccgccaccgc caagacgtga gctaccgccg ccgctccggc gtcgaataca aaaacgaatt
     2161 ggaacacggc ccgtgggaca gcctcaagct gcgctacgac aagcagcgca tcgatatgaa
     2221 cacttggact tgggacatcc cgaaaaatta cgatttgcgc ggtatcaaca gtgaagttta
     2281 ccattcgttc cggcatatcc gccaaaacac cgcgcaatgg actgccgatt ttgaaaaaca
     2341 actcgacttt tccaaagccg tttgggcggc gcaatacggc ttgggcggcg gcagagggga
     2401 caatgccaac tcggattaca gctatttcgt aaaactttac gaccccaaaa tcctcacttc
     2461 caaccaagcc aaaatcacaa tgctgatcga aaaccggtcg aaatataaat ttgcctattg
     2521 gaacaatgtg tttcacttgg gcggcaacga ccgcttccgc ctgaatgcgg gcatacgcta
     2581 cgacaaaaac agcagcagcg cgaaagacga tccgaaatac accaccgcca tccgggggca
     2641 gattccccat ttgggttcgg aacgcgcgca cgcgggcttc agctacggca cggggttcga
     2701 ctggcggttt accaagcatc tgcacttgtt ggcaaaatac agcaccggct tccgcgcacc
     2761 gacttcggac gaaacctggc tgctgttccc acaccccgat ttctacctga aagccaaccc
     2821 aaacctgaaa gccgaaaaag ccaaaaactg ggaattgggt ctggcgggca gcggcaaagc
     2881 gggcaacttc aagctctcgg gcttcaaaac caaataccgc gactttatcg aattgacgta
     2941 tatgggcgtt tcgtcagaca accctaacaa gcccacctac gccccgcttt cagacggtac
     3001 ggcattggtc agctcgcccg tttggcaaaa ccaaaaccgc accgccgcct gggtgaaagg
     3061 catagagttt aacggcactt ggaacctcga cagcatcggt ttgcccaaag ggctgcacac
     3121 cggcctcaac gtcagctaca tcaagggcaa ggcaacgcaa aacaacggca aagaaacgcc
     3181 catcaacgcg ctttcgccgt ggacggcggt ttacagcctg ggctatgacg cgccttccaa
     3241 acgttggggc atcaacgcct acgccacgcg caccgccgcc aaaaagccgt ccgacaccgt
     3301 acacagcaac gacgacttga acaacccgtg gccttatgcc aaacacagca aggcctatac
     3361 gctgttcgac ctttccgcct acctcaacat cggcaaacag gttacgctcc gcgctgccgc
     3421 gtacaacatt accaacaagc agtactacac ttgggaatct ttacgcagca tccgcgagtt
     3481 cggtacagtt aaccgcgtcg acaacaaaac ccatgccggc atccaacgct ttacctcgcc
     3541 gggcaggagc tacaatttca ccatcgaagc gaagttctaa gctcctgatg tgccaatgcc
     3601 gtctgaaacc cgatgatttg ggtttcagac ggcatttttt acggtcgcac cgccgccccc
     3661 tttcaggctt gtaccaagcc caatcccgca actctccgtc attcccacgg aagtgggaat
     3721 ctagaaacgc aaagctgcaa gaatttatcg gaaatgactg aaactcaacg aacctggatt
     3781 cccgcctgcg cgggaatgac gaagccatcc gcacggaaac ctgcacc
//
LOCUS       DAXIFS010000173         3723 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.173, whole genome shotgun sequence.
ACCESSION   DAXIFS010000173 DAXIFS010000000
VERSION     DAXIFS010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.173"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..217
                     /locus_tag="ACFOCA_001733"
     CDS             <1..217
                     /locus_tag="ACFOCA_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988402.1"
                     /translation="SLHIENAAQANLQFASLVLALSHGERGLGCRLPLRFRQILTSLI
                     PRFSFAEAALSDDLLEHHRYTHLRNAV"
     gene            complement(228..551)
                     /locus_tag="ACFOCA_001734"
     CDS             complement(228..551)
                     /locus_tag="ACFOCA_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6988403.1"
                     /translation="MDIVQLGSAELKAWMDEGRMFCLLDVRTDEETAVCSLPNALHIP
                     MNLIPLRQNELPDDVPLVVYCHHGIRSLHTAMYLADAGFENLYNLQGGIDAWAAEIDG
                     NMMRY"
     gene            complement(631..1287)
                     /locus_tag="ACFOCA_001735"
     CDS             complement(631..1287)
                     /locus_tag="ACFOCA_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HFC6988404.1"
                     /translation="MDFEKARFNMVEQQIRPWDVLDFDVLDALAEIPRELFVDEDLQG
                     LAYADMALPLANGHKMLEPKVVARLAQGLKLTKNDTVLEIGTGSGYATALLAKLAGRV
                     VSDDIDAEQQNRAKAVLDGLGLDNIDYVQNNGLTELSAGAPFDAVYVGGAVNLVPEVL
                     KEQLKDGGRMVVIVGRKPVQRALLITRKGDVFEEKVLFDTLVAHLDDKDADPFGGFQF
                     "
     gene            complement(1389..1916)
                     /locus_tag="ACFOCA_001736"
     CDS             complement(1389..1916)
                     /locus_tag="ACFOCA_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HFC6988405.1"
                     /translation="MYATIGDVMHALHFSASDKAALYREVLPQIESVVADETDWVANL
                     ANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGT
                     VVVGDVDAHPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGEL
                     AKILEKRFEASRQAV"
     gene            2076..2849
                     /gene="tpiA"
                     /locus_tag="ACFOCA_001737"
     CDS             2076..2849
                     /gene="tpiA"
                     /locus_tag="ACFOCA_001737"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFC6988406.1"
                     /translation="MYHQIGMWDQKWVIGNWKMNGRLQNNNSLMHRFRILPTAERVLI
                     GLAAPTVYLLQLHNAMQIVLNNRILTCAQDVSRFPDNGAYTGEVSAEMLADTGTDIVL
                     IGHSERSLYFGEKNEIQRRKMENVLNVGLIPLLCVGESLEEREAGKEHEVIAHQLSIL
                     QGLDTKNIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDVKIRVLYGGSV
                     KADNAADIFAVPYVDGALVGGASLSYDSFTAIISAAQNA"
     gene            2856..3206
                     /gene="secG"
                     /locus_tag="ACFOCA_001738"
     CDS             2856..3206
                     /gene="secG"
                     /locus_tag="ACFOCA_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFC6988407.1"
                     /translation="MEAFKTLIWIVNIISALAVIVLVLLQHGKGADAGATFGSGSGSA
                     QGVFGSAGNANFLSRSTAVAATFFFATCMAMVYIHTHTTKYGLDFSNVQQTQQAPKPI
                     SNTEPSAPVPQQQK"
     gene            3220..3305
                     /locus_tag="ACFOCA_001739"
     tRNA            3220..3305
                     /locus_tag="ACFOCA_001739"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3254..3256,aa:Leu,seq:gag)
     gene            complement(3474..>3723)
                     /locus_tag="ACFOCA_001740"
     CDS             complement(3474..>3723)
                     /locus_tag="ACFOCA_001740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988408.1"
                     /translation="SELNLNRYGKARQRRTGLNLIHYSIGFFQKPKKKPLCILDGFPL
                     IPYGASVFPASYFPLGIPALVVVQLYFYGIFSRYFRML"
BASE COUNT         1004 a         1196 c          784 g          739 t
ORIGIN      
        1 cagcctgcac attgaaaatg ccgcccaagc aaaccttcag tttgccagcc tcgtcctagc
       61 cctctcccac ggggagaggg gattggggtg caggctgcct ttaaggttca ggcaaatttt
      121 aacttcgttg ataccgcgct ttagcttcgc agaagctgca ctttcagacg accttttgga
      181 acaccacagg tacacgcatt taaggaatgc cgtctgaaat gcctgcctca ataacgcatc
      241 atgttgccgt caatctcggc cgcccatgca tcgatgccgc cctgaaggtt gtacaggttt
      301 tcaaaacccg cgtccgccaa atacatcgcc gtatgcaggc tgcggatacc gtggtggcaa
      361 tacaccacaa gcggcacatc atccggcagc tcgttctgcc gcagcggaat cagattcatc
      421 gggatatgca gcgcatttgg cagcgaacaa accgccgttt cttcatccgt acgcacgtcc
      481 aacaaacaaa acatccgccc ttcgtccatc cacgccttca attccgccga cccaagttgc
      541 acaatatcca tcgcaccccc caaaaaaaaa ccaagcaaaa tgccgtctga agccccaaac
      601 ccgctttcag acggcatcgc aatccgaaca tcaaaactga aaaccgccaa acggatcggc
      661 atccttatca tccaaatgcg ccaccaaggt atcgaacagc accttctctt caaacacatc
      721 gcccttgcgc gtaatcaaaa gcgcacgctg aacaggcttg cggcctacga taaccaccat
      781 gcgtccgcca tctttcaact gttctttcaa cacttcaggc acaaggttta ccgcaccgcc
      841 gacataaacc gcatcaaacg gcgcacctgc ggaaagttcg gtcaacccgt tgttttgcac
      901 ataatcgata ttgtccaaac ccaagccgtc caacaccgct ttggcgcggt tttgctgttc
      961 ggcatcgatg tcgtccgaca ccacacgacc agccaatttt gccaacagcg cggtcgcata
     1021 gcccgaaccc gtgccgattt ccaaaaccgt atcgtttttc gtcagcttca agccctgcgc
     1081 cagccgcgcc acgactttcg gctcgagcat cttatgaccg ttggcaagcg gcagcgccat
     1141 atccgcatac gccaaaccct gcaagtcctc atcgacaaaa agctcgcgcg gaatctccgc
     1201 caaagcgtcc aaaacgtcaa aatccaatac atcccaagga cggatttgct gttcgaccat
     1261 attgaaccgc gctttttcaa aatccattta gtgctccgtc aaataattgt tccaacaata
     1321 gcaggcatta taaaaccaca ctcccgccgc gccaacttcg gcacgcgccg cccgcccctt
     1381 tccctcactc aaaccgcctg acgcgaagcc tcaaaccgct tctccaaaat cttcgccagc
     1441 tcgcccaaat acaaagcatc tgtctcatca aactgcgcca aatgttcgct gtccgcgtcc
     1501 aacacgccga tacagcggcc gtctgaaaac agcggcacga caatctccga acgcgacaaa
     1561 gacgaacagg caatatggtc gggatgcgcg tccacatccc cgacgaccac cgtcccgccc
     1621 ttcgcccaag cctgaccgca caccccgcga ccgaacggaa tccgcgtaca cgccaaaggc
     1681 ccctgaaacg gtgccaaaac caattcgtcc gaacgcgtat cgaccaaata aaaacccacc
     1741 caaaaccaac cgaacgcctc cttcaaaacc gccgccgtgt tcgccaaatt cgccacccaa
     1801 tccgtctcgt ccgccaccac agactcaatc tgcggcaaca cctcccgata aagcgcggcc
     1861 ttgtccgaag ccgaaaaatg aagcgcgtgc atcacatctc ctatagttgc atacatatca
     1921 ggcggccatt ataaaacaac ctgcccgaaa caacattcca aaccgccccc gcagccgccc
     1981 gccccaagtt gcgaacccgc cgcatatcca ctaaacttca cattgcaacg cgccacacgc
     2041 ggcagacaga aaaaacacga cacggagcaa aaaagatgta tcaccaaatc ggaatgtggg
     2101 atcaaaaatg ggtcatcggc aactggaaaa tgaacggccg gctccagaac aacaattcgc
     2161 tcatgcaccg cttccgcatc ctccccaccg ccgaacgcgt cctcatcgga ctcgccgccc
     2221 cgaccgttta cctgctgcaa ctgcacaacg ccatgcaaat cgtcttaaac aaccgcatcc
     2281 tcacctgcgc ccaagacgtg agccgcttcc ccgacaacgg cgcgtacacc ggcgaagtgt
     2341 ccgccgaaat gctcgccgac accggcacag acatcgtcct catcggacac tccgaacgca
     2401 gcctttattt cggcgaaaaa aacgaaatcc aacgccgcaa aatggaaaac gtcctcaacg
     2461 tcggactcat cccgttattg tgcgtcggcg aaagcctcga agagcgcgaa gccggcaaag
     2521 aacacgaagt catcgcccat cagctttcca tcctgcaagg gctggatacc aaaaacatcg
     2581 ccgtcgccta cgaacccgtc tgggcgatcg gcaccggcaa agtcgccacc gtcgaacaga
     2641 ttgccgatat gcacgcattc atctacaaag aaatcttgtc tttgtgcgga agcgatgtta
     2701 aaatccgcgt cctttacggc ggaagtgtga aagcggacaa cgcggccgac atcttcgcag
     2761 taccttatgt ggacggcgca ctcgtcggcg gcgcgtcatt gtcgtacgac tcctttaccg
     2821 ccatcatcag tgccgcacaa aatgcgtaga aaaatatgga agccttcaaa accctaattt
     2881 ggattgttaa tataatttcc gctttggccg tcatcgtgtt agtattgctc caacacggca
     2941 aaggcgcgga tgccggcgcg accttcggat cgggaagcgg cagcgcgcaa ggcgtattcg
     3001 gctctgccgg caacgctaac ttcctcagcc gttcgaccgc cgttgcagca acatttttct
     3061 ttgcaacctg catggctatg gtgtatattc acacccacac gacaaaatac ggtttggact
     3121 tcagcaacgt acaacaaact cagcaagcac ccaaacccat aagcaatacc gaaccttctg
     3181 cccctgttcc tcagcagcag aaataacagt ttttcaaatg ccgacatggt gaaattggta
     3241 gacacgctat cttgaggggg tagtggccgt aggctgtgcg agttcaaatc tcgctgtcgg
     3301 caccaacaca caaaacgctt agaaattcta agcgtttttt tcgtttaatc ctgtctaatg
     3361 ccgtcaacca atcccaatca atacaaggat ttcaggctga ttgttatcct gccgtccccc
     3421 ttcctgacag tgcaatcccg tccaatccgc cctaattgaa ctaacctgat tttttacagc
     3481 atccgaaaat accgcgagaa aataccgtaa aaataaagct gaacgaccac caaagcagga
     3541 atgccaagcg ggaaatagct tgcggggaat actgacgcac cgtagggaat gagggggaaa
     3601 ccgtccaaga tgcagagcgg tttttttttg ggtttttgga aaaaacctat actatagtgg
     3661 attaaattta aaccggtacg gcgttgcctc gccttgccgt accggtttaa atttaattca
     3721 cta
//
LOCUS       DAXIFS010000174         3671 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.174, whole genome shotgun sequence.
ACCESSION   DAXIFS010000174 DAXIFS010000000
VERSION     DAXIFS010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.174"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(100..1017)
                     /gene="thrB"
                     /locus_tag="ACFOCA_001741"
     CDS             complement(100..1017)
                     /gene="thrB"
                     /locus_tag="ACFOCA_001741"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFC6988409.1"
                     /translation="MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTT
                     SGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVA
                     CLKGSDTALPTAEQCFHTGAMLAKMHLVAADFPLEMENPRYDAWWTEACARLLPVLSQ
                     DDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMY
                     DLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSR
                     LLDFHFPQAGEMTFIKDPNAFRNLLLSLD"
     gene            complement(1054..1782)
                     /gene="ubiG"
                     /locus_tag="ACFOCA_001742"
     CDS             complement(1054..1782)
                     /gene="ubiG"
                     /locus_tag="ACFOCA_001742"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061542 - 3-demethylubiquinol-n
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HFC6988410.1"
                     /translation="MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLR
                     LDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNN
                     VADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFST
                     INKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYH
                     VLSQTYALCDSTDVNYMFACRPAF"
     gene            1934..3175
                     /locus_tag="ACFOCA_001743"
     CDS             1934..3175
                     /locus_tag="ACFOCA_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015173 - aromatic amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015801 - aromatic amino acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter"
                     /protein_id="HFC6988411.1"
                     /translation="MPTKTPSLFGCAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLL
                     YTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYI
                     FVGGDLTAKGIGNALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTSVLIGGMVLTF
                     IWATGGLIADAKMPVLFDTQAPAGTGYWIYAATALPVCLASFGFHGNVSSLLKYFKGD
                     APKVAKSIWMGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQT
                     GNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLISC
                     LLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLF
                     GIVNIAAQVLSQMELVPVFKG"
     gene            3233..>3671
                     /locus_tag="ACFOCA_001744"
     CDS             3233..>3671
                     /locus_tag="ACFOCA_001744"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6988412.1"
                     /translation="MELKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKFD
                     HGIPEYAMIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLICG
                     GTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRR"
BASE COUNT          869 a         1164 c          846 g          792 t
ORIGIN      
        1 ggaaaatacc cggctatcgt ctcattttcg ttttaatcag ccataaaaat gccgtctgaa
       61 accctttcag acggcatttc tgtcaaacgc cggacgcact caatccaaac tcaacagcag
      121 gttgcggaac gcgttcgggt ctttgataaa cgtcatctcg cccgcctgcg gaaaatgaaa
      181 atccaacagg cgcgacaccc aaaaacggat gcagccggcg cgttgggcgg tcggaaaata
      241 cgccttttct tcggcactca aggggcgcac gccctcataa ccgccgataa acgccttttt
      301 caacgcctca tccaacttat tgtccgccgt ccttgcccaa tcgttgaccg caatcgccaa
      361 gtcatacata aaattgcccc ggcaggcata ataaaaatcg ataaagcccg acacctgacc
      421 gccgtcaagc aacacattgt ctttaaacaa atcggcgtgg atgatgcccg aaggcagatg
      481 attgccgaga ttgtccttca gcgcatcgat ttcggaacac agcagcgcag catcgtcttg
      541 cgacaggacg ggcagcagcc gggcgcacgc ctccgtccac cacgcatcgt aacgcgggtt
      601 ttccatttcc aaagggaaat cggcggcgac aaggtgcatt ttggccaaca tcgcaccggt
      661 atggaaacac tgctccgccg tcggcagcgc agtatccgaa cctttcaggc aggcaaccaa
      721 gcaggcgggc ttgcccgcca aaacggaatc aagccggccg tctttgcgcg caaccggcgc
      781 ggcaaccgcc acgcccttca tactcaaatg ccggttaagc tccagaaaaa acggcagctc
      841 ttcctgtttc aacacttcaa acacggtcag cacataacgt cccgaagtcg tcgtcagaaa
      901 ataattgctg ttggtaatcc cctgcgcgat gccctgcagg gaaacaaatt cccccaaatc
      961 gtaaccgctc aggaagccgc gcatttcatc atcggaaaca ctggtataga cagacatatc
     1021 aactcacttg ctcaaaaacg ggcaaacccg ccgtcagaac gccggacggc aggcaaacat
     1081 ataattcaca tcggtcgaat cgcacagggc ataagtttgc gacaacacat ggtaagtcat
     1141 acccttcgta tccgccacat ccaagcctgc ctgacggcac attcgcgcca gctcggcagg
     1201 tgcgatgaat tttttccagt cgtgcgtgcc tttggggaca aacttcaaca gatattccgc
     1261 cgccacaatc agatgcaggt acgatttcgg gtttttattg atggtagaaa aaaacaccat
     1321 gccgtccggt ttgaccagat tggcacaagc acgcacgatg gcggcgggat cggggacgtg
     1381 ttccatcatt tccatgcacg ttaccacatc gaacgagtgc ggttccgcct cggcaaggtc
     1441 ttccacgcgg atacattcgt attcgatatc ggcgacattg ttcaaagccg cgtgcaggcg
     1501 ggcggtttcc agcgactgct ccgccatgtc gatacccttt acaaacgccg cgccgcgccg
     1561 cgccatgctt tccgccagga tgccgccgcc gcagcccaca tccaaaaccc gtttgccgca
     1621 caaatccgcg tgtccgtcga tataatccag ccgcagcgga ttgatgtcgt gcaaggtttt
     1681 gaactcgccc gacttgtccc accatttgtc ggcaatccgg ctgaatttgg cgatttcccc
     1741 ctcatcgaca ttatattttt tgtcggacat tttccctccc atctgacgaa ccgcccactc
     1801 caaaacccaa gattatacta tggaacgcaa tgccgtctga aagccttttc gggcggcgcg
     1861 gcgcaaatac cttacaaatc cttacacttt acggcataat ggcggctcgc tttttctggc
     1921 agaaagacaa aatatgccca ccaaaacccc ttcactgttc ggctgcgcga tgattatcgc
     1981 cggcacggtc atcggcgcag gtatgctcgc caacccgacc gccacatccg gcgtatggtt
     2041 taccggctcg ctggccgtgt tgctgtacac ctggttttcc atgctctcca gcggcctgat
     2101 gattttggaa gtcaacaccc actaccccca cggcgcgagc ttcgacacca tggttaaaga
     2161 cctgctcgga cgcggctgga acatcatcaa cggtatcgcc gtcgccttcg ttttatacct
     2221 gcttacttac gcttatatct tcgtcggcgg cgacctgacc gccaaaggca tcggcaacgc
     2281 cttgggcggc aatgtttcgc ttaccgtcgg acaactcgtc ttcttcggca tcctcgcctt
     2341 ttgcgtatgg gcatccgcac gcttggtcga ccgattcacc agcgtcctca tcggcggcat
     2401 ggtattaacc tttatttggg caaccggcgg cctgattgcc gatgccaaaa tgcctgtttt
     2461 gtttgacacc caagcccctg ccggcaccgg ctactggatt tacgccgcca ccgccctgcc
     2521 cgtctgcctc gcttccttcg gcttccacgg caacgtttcc agcctgctca aatactttaa
     2581 aggcgacgcg cccaaagtgg ctaaatccat ctggatgggc acactgattg cgctggtaat
     2641 ttacgtcctc tggcaaaccg ccatccaagg caacctgccg cgcaacgagt tcgcccccgt
     2701 gattgccgcc gaagggcaag tctccgtcct catcgaaacc ctgtccaaat tcgcccaaac
     2761 cggcaatatg gacaaaatat tgtccctgtt ttcctatatg gcgatcgcca cctcgttttt
     2821 aggcgtaacg ctcggactct tcgactacat cgcagacatc ttcaaatgga acgacagcgt
     2881 gtccggccgc accaaaaccg ccgcgctgac cttcctgccg cccctgattt cctgcctgct
     2941 cttccccacc ggcttcgtta ccgccatcgg ctacgtcggc ctggcggcaa ccgtctggac
     3001 aggcatcatc cccgccatgc tgctctaccg ttcgcgcaaa aaattcggcg caggcaaaac
     3061 ctataaagtt tacggcggct tgtggctgat ggtttgggtc ttccttttcg gcatcgtcaa
     3121 catcgccgca caggtattga gccaaatgga actcgtcccc gtatttaaag gataaaggca
     3181 aaatgccgtc tgaagccctg ttcagacagc cttacgacat tcggaaaatc atatggaact
     3241 caaaatagac attgcaacca acaacttcaa acacggcggc ggcacggaac gctacacatt
     3301 ggatttggta aagggtctga acagacaaaa catcacaccg gccgtttatg cgacgaaatt
     3361 tgatcacggc attcctgaat acgccatgat cgaaccccat cttgtcgatc aacaccggac
     3421 gctgaaaaaa ctacgctcat tcctcttttc aagtcggctc gctcaaacca gaaaaaacag
     3481 tgccgccaaa ctgattgcct gccaccacgc cgattacgcc gacctcctca tctgcggcgg
     3541 cacacacttg ggctacctgc accatatggc gcaaaaaccg aacctgctcg accgtctcgc
     3601 catacgccgc aaccgcagca actacgccac cgccaaactg attatggcgc attcccatat
     3661 gatgcggcgc g
//
LOCUS       DAXIFS010000175         3666 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.175, whole genome shotgun sequence.
ACCESSION   DAXIFS010000175 DAXIFS010000000
VERSION     DAXIFS010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.175"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..1939
                     /locus_tag="ACFOCA_001745"
                     /pseudo
     CDS             1..1939
                     /locus_tag="ACFOCA_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374913.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(2120..3487)
                     /locus_tag="ACFOCA_001746"
     CDS             complement(2120..3487)
                     /locus_tag="ACFOCA_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HFC6988413.1"
                     /translation="MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRS
                     VESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCIT
                     VEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIG
                     LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAW
                     VGIPDIESAVRLLTETQAHFAERLCSFELIGRFAAELSSEFSKFPLPTHSEWHILLEL
                     TDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHD
                     IAVPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYEN
                     DINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNP
                     GKLLP"
BASE COUNT         1057 a          783 c          881 g          945 t
ORIGIN      
        1 gctgttgatt acgtttacga caattctaaa ttaacaaatg agcaaattga tcgcttaaaa
       61 aaacttagag ataaaagcag cgaactggaa acaagaaact tatcttctaa aaccgacgaa
      121 tggtagctct cagaactctc tcaaagttcc cgcactatac tctaaaacac accaattcaa
      181 aaacatcaac aactcaaaaa agatttcttt ttatgacaag gaatacactg aagattacct
      241 tgttggcttc gcccgaggtt tcggggttga aaaaagaaat ggggaagaag aaaaaacact
      301 ccagcaatat tttaaggact gtgtaaatac tgggaattcc aataatgata agtgtgaaca
      361 accatccttc gaaaactctg gcccaagatt aataaagagc gatattttcg ccttagctcc
      421 acaaataaaa aatagccata tcaacagcga aattttatct gtaggtaatt atatcgaatg
      481 gcttcgccca acacttaata agcttcctag ttggcaagag catctctatt ctggtttaga
      541 tccattccac tatattgagg ttacagacaa ctcacacgtt atcggacaaa caattagttt
      601 ggatgaattc cgcttagaaa attctctctg ggaaccccgt tgggattctg atgttgggga
      661 attaaaaaca acgaatgcag acatccgttt taatactaaa agtgaaagtt tactcgtaaa
      721 agaagattat gctggcggag ctcgttttcg ttttgcttac gatctaaaag ataaagtctc
      781 tgaaacacca gttttaactt ttgaaaaaaa tataactggc acttccgaca tcatcttcga
      841 aaatccaata gacgatttaa aaagtctcga cgggcatcaa attatcaaag taaatggcac
      901 agcagataaa cacgcattcc gtctttctgg caaacaccaa aagggaattt atacgctttc
      961 tttacaacaa cgcccagaag gcttttttac caaagtgcaa gaacgcgatg atatttcgat
     1021 ttatgcacaa caggctcaag ccgccaatac cttattcgcc ttgcgtttga acgacaaaaa
     1081 cagcgatatt tttgaccgca ctttaccacg caaaggcttg tggttgcgtg tgattgacgg
     1141 acattccaac caatgggtgc aaggcaaaac agcacctgta gaaggctatc gtaaaggtgt
     1201 gcaactcggt ggcgaagtat tcacatggca aaacgaaagt aatcaacttt ccgttggctt
     1261 aatgagcgga caagcagaac aacgcagcac tttccgcaat ccagatacag acaatcttac
     1321 aacgggaaat gtgaaaggct ttggggcggg catttatgcc acttggcatc agcttcagga
     1381 caaacagaca ggtgcgtatg cggatagctg ggtacaatat caacgcttcc gccaccgcat
     1441 taacactgaa gatgctacag aacgttttac ttcaaaaggt attaccgcct caattgaagc
     1501 gggttacaat gctttattgg cagaacactt cactaaaaag ggcaacagcc ttcgtgttta
     1561 cctacaacca caggcacaat tgacttattt gggggtaaac ggaaaattca gcgatagcga
     1621 aaatgcccac gtgaatttac ttggctcccg ccaattacaa actcgggttg gcgttcaagc
     1681 taaagctcaa ttttcactct ataaaaatat cgctattgaa cctttcgccg ctgtgaacgc
     1741 gctttaccac aacaaacctt tcggtgtgga aatagacgga gagcgtcgag tgataaacaa
     1801 taagacggca attgagagcc aattaggtgt agcagtgaaa atcaaatctc acttaacttt
     1861 acaagcctca ttcaaccgcc aaacaagcaa atatcatcag gctaaacaag gtgcgttgaa
     1921 tttgcagtgg acgttttaag ttaagttgta acaaaataaa atcggcaggg aaattcactg
     1981 ccgatttttt tattttaaaa atgcggtcat ttttcgtgtc atttccacca attttttacc
     2041 gcactcacga gctcgcgcta aaccgacaat cggatctatt gtccctttct ttgttgtgta
     2101 tgcaaatcag aaatgccggt tacggaagca gtttgcccgg attcataatg ttatatggat
     2161 caaggtgttg tttgatgctt ttcatcaggg cgatttcggc aggcgtgcgt actttgtcca
     2221 gccactgttt tttgatgata cctatgccgt gttcggcggc aatcgtgccg ttgcaggcaa
     2281 gaacgttgcg ataaactgcg tcgttgatgt cgttttcgta acgatagact tcattgctga
     2341 ggatttcggg caggaaagta ttgtagtgca ggctgccgtc gccaagatgt ccgaagcaga
     2401 cgatttgtat gcctttaaaa ttctgttcca aatctttggc gcaccggcgg acaaagtcgg
     2461 caacgcgtcc gataggaacg gcaatatcgt gtttgatgct ggtgcccagt ttgcgttggg
     2521 aggcggagat gttttcgcgc aatgcccaca tatggatacg ttcttgttcg ctttgtgcca
     2581 atacgctgtc ggtaaatcct tttttataaa gaaattcgac gagccgatca tcaagattgc
     2641 tgtcgggtaa tgagtcggtc aactcaagta aaatatgcca ttctgaatgt gtcggcaggg
     2701 ggaatttgct gaattcggaa gacaactcgg cggcaaaacg gccgatcagc tcaaaactgc
     2761 ataggcgttc ggcaaagtga gcttgggttt cggtcagcag gcggacggcg gattcgatgt
     2821 cgggtatgcc gacccatgcc gttgccttgt ccgagggacg ggcaaaaagc ttgagtgtgg
     2881 cggcagtgat gatgcccagt gtgccttcgc tgccgataaa cagatggcgc aggtcgtagc
     2941 cggtggtgtt tttatgcagg ggatggagat gggaaaccag ctcgccgttg gggaggacga
     3001 cttccaaacc gataatcagg tcgcgcatcg tgccgtaacg caatacgttc aaacctccgg
     3061 cattgcaggc gatgttgccg ccgatttgac aggagccttc gctggcgaga ctgagtggga
     3121 acagcctgtt tgaggcttcg gctgcctgtt ggacggtttg gagtacggaa cctgcttcga
     3181 cggttatgca gttgtctgac aaattgatgc tgcggatgcg gttgagtttg gaaaggttca
     3241 gcaatacgcc gttttccgat actgccgcgc cgcacaaacc ggtattgccg ccttgcggcg
     3301 taaccggaat acggtgttcg taacaaaaac gcataatggt ttgcacgctt tcaacgctgc
     3361 gcggctgcaa aatgatgtct ggtgcagacg taaagcggtt gcgctggtct tttaaaagcg
     3421 tcggagaaag ttcggcaatt tcatctgccg gcaggagtcg ggaaaattcg gtatgaaggt
     3481 caggcatgtt tgtcggaagg gtagggagaa gattgaggaa gggaatctga tgccgtctga
     3541 aaaatcaaaa aagcaggata ctgaacgtat cctgcttttt tgcaagcgga aaatgcttat
     3601 tttgcagctt cggcagcagg agcttcggca gcaggagctt cagcggcagg tgcttcggta
     3661 gcggca
//
LOCUS       DAXIFS010000176         3655 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.176, whole genome shotgun sequence.
ACCESSION   DAXIFS010000176 DAXIFS010000000
VERSION     DAXIFS010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.176"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..577
                     /gene="map"
                     /locus_tag="ACFOCA_001747"
     CDS             <1..577
                     /gene="map"
                     /locus_tag="ACFOCA_001747"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6988414.1"
                     /translation="PKSCCTSVNHVICHGIPDDKPLKEGDIINIDLTIKKDGFHGDSS
                     RMFTVGKVSPIAQRLIDVTHASMMAGIEAVKPGATLGDVGYACQQVAENAGYSVVQEF
                     CGHGIGRGFHEAPQVLHYGKKGQGSVLKPGMIFTVEPMINQGKRHLRILNDGWTVVTK
                     DRSLSAQWEHEVLVTETGYEILTVSPASGKP"
     gene            732..1031
                     /locus_tag="ACFOCA_001748"
     CDS             732..1031
                     /locus_tag="ACFOCA_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6988415.1"
                     /translation="MKIFENIEDVKAIRKKTGLNQIDFWGKVGVTQSGGSRYETGRKM
                     PKPVRELLRLVHIECIDLAKVNKKDMEIAALLKKHHPDLYAELSKQTKSERKKQS"
     gene            1269..1643
                     /locus_tag="ACFOCA_001749"
     CDS             1269..1643
                     /locus_tag="ACFOCA_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6988416.1"
                     /translation="MKLLTTAILSSAIALSSMAAAAGTNNPTVAKKTVSYVCQQGKKV
                     KVTYGFNKQGLTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVMDGKSY
                     RKQPIMITAPDNQIVFKDCSPR"
     gene            complement(1831..3297)
                     /locus_tag="ACFOCA_001750"
     CDS             complement(1831..3297)
                     /locus_tag="ACFOCA_001750"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate:quinone oxidoreductase"
                     /protein_id="HFC6988417.1"
                     /translation="MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALE
                     SSNAWNNAGTGHSALCELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLE
                     DNSFINAVPHMSLVMNEDHCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG
                     RDENQPVAANYSAEGTDVDFGRLTRQMVKYLQGKGVKTEFNRHVEDIKRESDGAWVLK
                     TADTRNPDGQLTLRTRFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFFRNSTPET
                     AEQHNAKVYGQASVGAPPMSVPHLDTRNVDGKRHLMFGPYAGFRSNFLKQGSLMDLPL
                     SIHMDNLYPMLCAGWANMPLTKYLLGELRKTKEERFASLLEYYPEANPDDWELITAGQ
                     RVQIIKKDSEKGGVLQFGTEIVAHADGSLAALLGASPGASTAVPLMIRLMHQCFPERA
                     PSWEGRLKELVPGYGIKLNENPERADEIIAYTAKVLDI"
BASE COUNT          954 a          999 c          903 g          799 t
ORIGIN      
        1 ccccaaatcc tgctgcacct ccgtcaacca cgtcatctgc cacggcattc ccgacgacaa
       61 gccgctcaaa gaaggcgaca ttatcaacat cgacctcacc atcaaaaaag acggcttcca
      121 cggcgactcc agccgtatgt ttaccgtcgg caaagtctcc cccatcgccc aacgcctgat
      181 cgacgtaacc cacgcctcca tgatggcggg catagaagcc gtcaaacccg gcgcgacact
      241 gggcgacgta ggttacgcct gccaacaggt tgccgaaaac gccggctatt ccgtcgtaca
      301 ggaattctgc ggacacggca tcgggcgcgg tttccacgaa gccccgcaag tgttgcacta
      361 cggaaaaaaa ggacagggct ccgttctaaa accgggtatg atttttaccg tcgaaccgat
      421 gatcaaccaa ggcaaacgcc acctgcgtat cctcaacgac ggctggacgg tggttaccaa
      481 agaccgctcc ctctccgccc aatgggaaca cgaagtcttg gtgaccgaaa ccggctacga
      541 aatcctcacc gtcagccccg cctccggcaa accctgaagc cggacgtatc cgccccataa
      601 aaacaaacaa tgccgtctga aagaaacggc agatatgata tataatataa aaacaggctt
      661 gacccggcac attacgaaaa caaagcaaat cggaatttgc cccgcaacca gacaaactta
      721 aaggaagttt tatgaaaata tttgaaaata tagaagatgt taaagccatc cgtaaaaaga
      781 ccgggctgaa ccagatagac ttctggggca aggtcggcgt tacccagtct ggaggctcgc
      841 gctacgaaac cggccgcaaa atgcccaaac ccgtacgcga actgctccgc ctcgtccata
      901 tcgaatgcat cgatttggcg aaagtcaaca aaaaagatat ggaaatcgcc gccctgttga
      961 aaaaacacca tcccgacctg tatgccgagt tgtccaaaca gaccaagtcc gaaagaaaaa
     1021 aacaaagtta aaccgcaacc tccggatgcc cgacagtttt tcatttccga aaaacgcaaa
     1081 caatgccgtc tgaaacaccg gacaggtcgc cgtatcccgc ctgccgcccc tgcctcaaac
     1141 cgccgaaccg cccgaacccg cctttttaca aactttatcc aatttcctgt ttatttcagg
     1201 atacgccgac attagaatgt caaacagctc gaaacgggca aactccacat ccatccaaag
     1261 gaataaaaat gaaacttctg accaccgcaa tcctgtcttc cgcaatcgcg ctcagcagta
     1321 tggctgctgc tgccggcacg aacaacccca ccgttgccaa aaaaaccgtc agctacgtct
     1381 gccagcaagg taaaaaagtc aaagtaacct acggcttcaa caaacagggt ctgaccacat
     1441 acgcttccgc cgtcatcaac ggcaaacgtg tgcaaatgcc tgtcaatttg gataaatccg
     1501 acaatgtgga aacattctac ggcaaagaag gcggttatgt tttgggtacc ggcgtgatgg
     1561 atggcaaatc ttaccgcaaa cagcccatta tgattaccgc acctgacaac caaatcgtct
     1621 tcaaagactg ttccccacgt taatcaggca acaaaaaaca gcgttttcag aaatgaaaac
     1681 gctgtttttt tgaccgttcc attattcgca aaagggaaaa aacgattacc tgccccgtgt
     1741 atcaaaacct gccctgccgg atgaagggca taaccggcag ggacggcatc aacaccatat
     1801 gggggtacgg cttttcttga aagattcggc ttaaatatcc aacactttcg cggtataggc
     1861 gataatttca tccgcccttt cggggttttc gttcaacttg atgccgtaac ccggtaccag
     1921 ctctttcaga cggccttccc aagacggggc gcgctcgggg aagcattggt gcatcagccg
     1981 gatcatcagc ggcacagcag tcgatgcgcc cggcgacgcg cccagcaatg cggcgagtga
     2041 gccgtcggcg tgggcgacaa tctccgtacc aaactggagc acgccgcctt tttcggagtc
     2101 ttttttaatg atttggacgc gttgccctgc ggtgatgagt tcccagtcgt cggggtttgc
     2161 ctcggggtag tattccagca gggaggcgaa gcgttcttct ttggttttac gcaattcgcc
     2221 cagcaggtat ttggtcagcg gcatattcgc ccagccggcg cacagcatag gatagaggtt
     2281 gtccatatgg atggacagcg gcaaatccat aagcgagcct tgcttgagga agttggaacg
     2341 gaagcctgca taagggccga acataaggtg gcgtttgccg tccacgttgc gtgtgtcgag
     2401 gtgcgggacg gacatcggcg gcgcgccgac ggaagcctgc ccgtacactt tggcgttgtg
     2461 ttgttcggcg gtttcagggg tgctgttgcg gaagaacagg ccggacacgg ggaagccgcc
     2521 gtagcctttg ccttcgggga tgccggattt ttgcagcagg gtcagcgcgc cgccgcccgc
     2581 gccgaggaag aggaagcggg tacggagggt gagctgcccg tcggggttgc gggtatcggc
     2641 ggttttgagc acccacgcgc cgtcggattc gcgtttgatg tcttcgacgt ggcggttgaa
     2701 ctcggttttt acgcccttgc cctgcaaata tttcaccatt tggcgcgtca gccgtccgaa
     2761 atcgacatcc gtgccttcgg cggagtagtt ggcggcgacg ggttggtttt cgtcccggcc
     2821 gcgcatcatc agcggagccc aatcggaaat tttgttccga tcggtggaaa attccatatt
     2881 ttcaaaaagt ttttgggttt taaacgcgtc ataacgtttt tgaagataag aacaatggtc
     2941 ttcattcatc accaaagaca tatgcggcac ggcattgatg aaggaattgt cttccaactt
     3001 gccttccgcg accaacgtcg cccaaaactg gcggctgaca tgaaactgtt cggcaatatt
     3061 gagggcgcgc gccggatcga taatcccatt tgcacccaac ggcgcatagt tcaattcgca
     3121 cagcgcggaa tgccccgtgc cggcgttgtt ccacgcgttt gacgattcca acgccacatc
     3181 ttccaagcgt tcaatcaggg tgatttccca agacggttcg agttctttga gcaaaacgcc
     3241 caaagtcgcg ctcataatgc cgccgcccac caagacaacg tctgtcgctt cagccatggt
     3301 ttactcctaa aaaacaggca tcttctgccc ttatggttat ttgccgtact acaaacgcct
     3361 gaatcgcaaa agcagggaaa accggcaatg gtgtgtgtcc gagtatgctg tttcggggtt
     3421 ggaatgcgtt gcaagtatgg cttccgacac cgcttcaggg gcttgtaata tgttatcgtg
     3481 aatgtagtgg attttactgg gaaatgcaaa gtttttctgt cgcccgccaa gcccgggaac
     3541 tgcgaaatga aaaataaaaa tagttattta tctatatata tcaaattttt aatagataaa
     3601 aaaccaaaat tgtttatata ttaattttta aaagattgtc agcatattgc gttaa
//
LOCUS       DAXIFS010000177         3648 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.177, whole genome shotgun sequence.
ACCESSION   DAXIFS010000177 DAXIFS010000000
VERSION     DAXIFS010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.177"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..183)
                     /locus_tag="ACFOCA_001751"
     CDS             complement(<1..183)
                     /locus_tag="ACFOCA_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
                     /protein_id="HFC6988418.1"
                     /translation="MPHLQNLSLGLKKKLPVILQTEISECGLACLAAVAGFHGFHTNL
                     RALRSKYCPRPLQNSPK"
     gene            complement(467..769)
                     /locus_tag="ACFOCA_001752"
     CDS             complement(467..769)
                     /locus_tag="ACFOCA_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988419.1"
                     /translation="MTWVGGSGNAQQSSYYCEICESAGLNDTGNPDKSLGLPNNTFSN
                     PPGWGATIGALAGSRIGMPEFGTFASHAIENFDWSWYRRYREIAETIEREYSGGLP"
     gene            complement(1078..1326)
                     /locus_tag="ACFOCA_001753"
                     /pseudo
     CDS             complement(1078..1326)
                     /locus_tag="ACFOCA_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237325.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFP transporter"
     gene            complement(1230..1856)
                     /locus_tag="ACFOCA_001754"
     CDS             complement(1230..1856)
                     /locus_tag="ACFOCA_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein"
                     /protein_id="HFC6988420.1"
                     /translation="MNRPKQPFFRPEVAVARQTSLTGKVILTRPLSFSLWTTFASISA
                     LLIILFLIFGNYTRKTTAEGQILPASGVIRVYAPDTGTITAKFVEDGEKVKAGDKLFA
                     LSTSRFGAGGSVQQQLKTEAVLKKTLAEQELGRLKLIHGNETRSLKATVERLENQKLH
                     ISQQIDGQKRRIRLAEDQWQKRHWADRNCRDWAWYPPIWRRATNLFIS"
     gene            complement(1917..2270)
                     /locus_tag="ACFOCA_001755"
     CDS             complement(1917..2270)
                     /locus_tag="ACFOCA_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988421.1"
                     /translation="MIELQLHELKLVSGGGPVTDNIAGNVANAATTKGGPTWGDLVAI
                     PAAAAAVYYLPKNAYGAAGANGVYNVTRDWVNDAVNAPPYNGRPIFEIEHGLTAPATK
                     ADKSGNGYTDGTDYC"
     gene            complement(2263..2490)
                     /locus_tag="ACFOCA_001756"
     CDS             complement(2263..2490)
                     /locus_tag="ACFOCA_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988422.1"
                     /translation="MKNWKQFTFFVILVIACYQVLYFLSDMFLLDYINKYSWNLNFIQ
                     GTLNFFSIYLPYVFVSRIFRNTNQEKEYKND"
     gene            complement(2499..3648)
                     /locus_tag="ACFOCA_001757"
                     /pseudo
     CDS             complement(2499..3648)
                     /locus_tag="ACFOCA_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704893.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
BASE COUNT         1003 a          817 c          761 g         1067 t
ORIGIN      
        1 ttttggggaa ttttgcaaag gtctcggaca gtattttgaa cgcagtgcgc gtaaattcgt
       61 atggaaacca tgaaatcccg ccacagccgc cagacatgcc aagccgcatt ctgatatttc
      121 tgtttgcagg ataacaggca gctttttctt taagcccaaa gacaggtttt gcagatgggg
      181 catagatttc ctttttgaaa aatagggatt aggaagttgg atgtatttta gaaaggccgc
      241 ctgaaaaggt ttcagacgac cttttgcgac tagctgctat tttatttaaa gcttttctct
      301 aacaaacgag ctaatatttt tcctgtaata aaacagataa aaaacagcat ccaatacgtc
      361 agattggaaa aatcggtcgt atagagaatc aacatataaa gaagcagcat gatgccgagt
      421 gcgatgaatt gataatgttt ggcaaacatc atgacctcct caactattaa ggcaaaccgc
      481 ctgaatattc tcgttcaatc gtttcggcaa tttccctata acgtcgatac catgaccagt
      541 cgaaattttc aatggcatgg ctcgcaaacg taccaaattc aggcatccct atgcggctac
      601 ctgctaaagc tccgattgta gctccccaac caggcggatt actgaacgta ttgtttggca
      661 atcctaaaga tttatcagga tttcccgtat cgttaagccc tgcagattcg caaatttcgc
      721 aataatatga gctttgttgc gcattacctg agcctccgac ccaagtcatt tcatgaacac
      781 atatagtgga ttaacaaaaa tcaggacaag gcgacgaagc cgcagacagt acaaatggta
      841 cggcaaggcg aggcaacgct gtactggttt ttgttaatcc actataaaac tctcattttg
      901 aaactccttg tatcgttaat caaacaatca aaagggcaga tgccctatcc ttgcttttac
      961 aaacggagtg cctgtaaaag gggatggttt caggcagttt tgaagtttgt gttttttatt
     1021 gtcttctggt cgtctgaaaa ggtttcagac aacttcttta tctttcagcc tcaagtctta
     1081 cagtttgccc gacatactat aaatcagctc caatacccat tcgtacagcc gccgtttctc
     1141 gtgcaggatg tctgcttcca acgtcatgcc gatttgcagc ggtttttcct caccgtatgc
     1201 agtgatggtt ggtttgtcgg gttttatttt cacgagataa acaggttcgt tgctcttcgc
     1261 caaatcggag gataccatgc ccaatcccga caattcctgt ctgcccagtg ccgtttttgc
     1321 cactgatctt ccgcaagtct aatgcgcctt ttctgaccgt ctatctgttg cgaaatatgg
     1381 agtttctggt tttccaaacg ttcgacagtt gctttaaggc tgcgcgtttc attcccgtgt
     1441 atcagcttca gacgacccag ttcctgttct gccaacgttt tcttcaaaac tgcctccgtt
     1501 ttcaactgct gctgcacgct acctcctgcg ccgaaacgtg aggtcgaaag cgcaaatagc
     1561 ttgtcgccag ccttaacctt ttctccatct tccacgaatt tcgctgtaat tgtccccgta
     1621 tccggtgcat acaccctgat tacgcctgat gcaggtaaaa tttgtccctc cgctgttgtc
     1681 tttcgcgtat agttaccaaa tatcaaaaac aggataatca ataacgcaga tatcgatgca
     1741 aatgtcgtcc atagggaaaa tgacaacggt cgtgtcagaa tcactttacc cgtcaggctg
     1801 gtttggcggg caacggcgac ttcgggacgg aagaagggtt gcttgggtct attcataaaa
     1861 ttgaagttaa gaaagtttca gacgacccct agagatcgtc tgaacaatga gaaatatcag
     1921 cagtaatctg taccgtcagt gtagccgttt cctgatttat ctgcttttgt tgcgggagca
     1981 gttaatccat gttcaatctc aaagattggt cttccgttat aaggaggtgc attaacggca
     2041 tcatttaccc aatcacgagt cacattgtat acaccatttg caccagcagc accgtaagca
     2101 tttttcggca gataataaac tgccgctgcg gcagcaggta ttgcaaccaa atccccccat
     2161 gtgggacctc ctttggttgt ggcagcatta gctacatttc cagctatatt gtctgttaca
     2221 ggacctcccc ctgaaaccag cttcaattca tgaagttgaa gttcaatcat ttttatactc
     2281 cttttcttgg ttggtattcc taaaaattcg gctaacaaaa acatatggca gatatattga
     2341 aaaaaaattc aaagtaccct gaataaaatt caaattccaa ctatatttgt taatgtagtc
     2401 gagaagaaac atatctgata aaaaatatag cacttgataa caagctatta ctaatattac
     2461 gaaaaatgta aattgcttcc agtttttcat agaatccctc acaaaatttc cagaaaatct
     2521 aactctatca actgataaat caacttccta acttcttcat attttccctg attgaagtta
     2581 accagtagat ttttcaacaa taacggttca ttcttaccga tgtgttctaa aacttttttc
     2641 cccaactcat ctacgcttat cttcatccca ttcccaatca aatatccctt ttccaacgta
     2701 tccaaattat tggcatttaa tctcaacctg acgtcgtctg aaagcggagt agcgttggga
     2761 ttcgcgaact gttcgagatg aaaagcggta tcggtacgtt ctttgccgag aaagtcttca
     2821 ctgaaggctt cataattgac ggggtcggca atcatggcag caatttgtgc ggcagtatcg
     2881 ttgatacgcg tcctatcttg ctcccagtct gagaaactgt ggcgcagact ttctatggtg
     2941 gggaatttct tcattagcca ctcgaggtaa ttatagccgt tgggcggaaa ggtaccgaca
     3001 gcgaggtgga aggtttcaca gccgagcggg ataggtctgt gccaccaacc gcgcgggatg
     3061 tagaggacat cacctgcttc aaggataata tccatatcga tatgttcagg aatggaaata
     3121 tcagtatctt tagtctgttg catatacaat ggcataggga aatcaggggc agtaagttgc
     3181 caacgtttct tgccgaaaag ctggatggca tacacatcgc gggtgtccca atggttttta
     3241 taagattcgt cgctgccaaa agcaagatac ccactaacaa tagtatgtgc gccggcaagg
     3301 cgggcgactt gacgggaaat atgatctgaa aacggctcgt tgttaatatg gttatagact
     3361 aacgacgcac cattcttcat atgttcgtag ataacggatt taataaaacg gtagcgagtt
     3421 ttgcccaaag cgtcgaaact ttcgacgtat tcttctttag gaacaattgc acctttttta
     3481 cgcagataaa acagcggtgc ggttgggtct gctcgttggt atatctcgtt gatatctttc
     3541 caagatgcgg cttcgagatt ccgaaccgct cctttaaaga gcttgggctt ttgatacaga
     3601 ttaagtctgt cggaacgttt taggactaat gccgaagtcg agatggat
//
LOCUS       DAXIFS010000178         3647 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.178, whole genome shotgun sequence.
ACCESSION   DAXIFS010000178 DAXIFS010000000
VERSION     DAXIFS010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.178"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            22..1287
                     /locus_tag="ACFOCA_001758"
     CDS             22..1287
                     /locus_tag="ACFOCA_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HFC6988423.1"
                     /translation="MSHLFRKEVFVAQQNKWTGQVILTRPFSFLFLTFCAFLIALCII
                     IFLIFGSYTNKTTVEGQLLPTMGVVRVYSSDIGTITHKFVEDGNFVKAGEPLFKLSTS
                     RFGEKGNVQAKLAAEANLKKTLALQELERLKRIHQNEQKNVHNNIHRLNNQLENIKQQ
                     ITGQNRQIRLAEKTLNKNKFLASQGAVSQQDKMTAESHLLEQRSRLESLKREQNNAIR
                     ELDEQKITLSSLPERHKTELSQLNRAITEMNQEILDFDLKSEQTIRASKSGYISTINV
                     DIGQQVEPSKLLLSIVPEQTELVANLYIPSKAVGFIKPKDKVVLRYQAYPYQKFGHAT
                     GEIISVARTALGKQELSGLGIIFTNPTLLNEPAYLVKVKLEKQTIKAYGENKPLQIGM
                     ILEADILHERKKLYEWVLDPLYSISGKIN"
     gene            1290..3377
                     /locus_tag="ACFOCA_001759"
     CDS             1290..3377
                     /locus_tag="ACFOCA_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HFC6988424.1"
                     /translation="MDYLSRLSFGFNKKLPVILQTEVAECGLACLTSILSYYGFHTDL
                     RTLRQKYTLSLKGANLADIMRFGNEMNLTPRALRLELDELSNLQLPCILHWNLNHFVV
                     LCSISKDSIVIMDPAVGMRKIKMDEVSQKFTGIALELFPNTHFEEKKETKKIKILSLL
                     RGISGLKRSLIQMLILAISLEVFALVSPFFMQWVIDHVIVTADKNLLLTLTLGFGLLA
                     ILQQLISLLQAWVGMHLSITLNLQWKANIFKRLLDLPNDYFSKRHLGDVISRFGSIDH
                     IQETLTSTFFVLVLNSLMAIFTFVLMTIYSTQLSLIVLLTLVLYILIRWLAYYPLRNA
                     TEENIVHEAKQNSYFMETIRGIQSVKLFDKHYQRHGTWMSLFVNTVNTKLTTDKLSAL
                     FEFSNKLLFSMENIIIIYLGASAILDGSFTVGVLMAFLAYKGQFESRTASLVDQYIQI
                     KMLGLHAERLADITLNETETEIIKYNHIPKLDNEQLVLKVENVSFRYADNEPYLFENI
                     NLEFKDNEAVVLTGQSGRGKSTLLNILTGSLKPETGTVSINGHDIYQVSPSFIRGLSG
                     IVRQDDVLFAGSIGENISFFDESPNMELIEQCAKMAQIHDDILKMPMGYETLIGDMGN
                     ILSGGQKQRVILARALYKRPKILFLDEASSHLDVENEQKINHNLKSLGIMKIMVAHRQ
                     ETIQSADKILNLG"
     gene            complement(3459..3632)
                     /locus_tag="ACFOCA_001760"
     CDS             complement(3459..3632)
                     /locus_tag="ACFOCA_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988425.1"
                     /translation="MSWWEFREFWGILQRSQTVKLAQKWEQEQKKQQIQQKKETEKSP
                     KHKASRDDWEMER"
BASE COUNT         1219 a          651 c          632 g         1145 t
ORIGIN      
        1 ttttttaaga aataataata aatgtcccac ttattccgaa aagaagtctt tgtagcccaa
       61 caaaataagt ggacaggtca ggttatcttg acccgtccat tctctttttt atttctgact
      121 ttttgcgctt ttctcattgc tctgtgtatc attatctttt tgatttttgg tagctatacc
      181 aataaaacaa ccgttgaagg tcaattactt ccaactatgg gggtggttcg tgtttactct
      241 tccgatatcg gcacgattac gcataaattt gttgaagatg gtaactttgt caaagctggc
      301 gaaccattgt tcaaactttc cacatcgcgt tttggcgaaa aaggaaacgt acaagccaaa
      361 ttggcagcag aagccaacct taaaaaaact ttggcattac aagaattgga acgtttaaag
      421 cgcattcatc aaaatgagca aaaaaatgtt cataacaaca ttcatcgttt aaacaatcaa
      481 ttagagaata ttaaacagca aattacaggg caaaatcgtc aaattcgttt agcggaaaaa
      541 acccttaaca agaacaagtt tttagccagt caaggcgcag tatcccaaca agataagatg
      601 accgccgaaa gccatttatt ggaacaacgc tcacgtttgg agagcctaaa acgtgaacaa
      661 aataatgcaa tcagggaact tgatgaacag aaaatcacat taagcagcct gcctgaacgc
      721 cataaaaccg aattgagcca actcaaccgt gcgattacgg aaatgaacca agaaattttg
      781 gattttgatt tgaaatccga acaaaccata cgagctagta aatcaggtta tatttcaaca
      841 attaatgttg atatagggca acaagttgaa ccgtctaaat tgctgttaag cattgtccct
      901 gaacaaactg aattggtcgc caatctttac atacccagta aagctgttgg ttttattaaa
      961 ccgaaagata aagttgtttt acgttaccaa gcgtaccctt accaaaaatt tggacatgcc
     1021 acaggagaaa ttatttcagt tgccagaact gctctcggta aacaagagct atcaggttta
     1081 ggtatcattt tcactaaccc aaccttatta aatgaacctg cctatcttgt gaaagttaaa
     1141 ttggaaaaac aaacgattaa agcatacgga gaaaacaagc cgcttcaaat tggcatgatt
     1201 ttagaagcag atattctcca tgaacgaaaa aaattgtacg aatgggtact tgacccactt
     1261 tacagcattt caggaaaaat caattaaaaa tggattattt atcaagactg tcctttggat
     1321 ttaacaaaaa gctacctgtc attctgcaaa cagaagttgc tgaatgtggt ttagcatgcc
     1381 tgacatccat cttgtcctat tatggctttc acactgattt aagaacgtta cgccaaaaat
     1441 acaccctgtc attaaagggc gcaaatcttg cagacatcat gagatttggc aatgaaatga
     1501 atttaacgcc acgagctttg cgtttagagt tagatgagct gtcaaattta caactaccct
     1561 gcattctcca ttggaactta aaccattttg ttgtactttg ttccatttcc aaagacagta
     1621 tcgtcattat ggaccctgct gtcggtatgc gaaaaatcaa aatggacgaa gtttcacaaa
     1681 aattcacagg gattgcccta gaattattcc ccaataccca ttttgaagag aaaaaagaaa
     1741 caaagaaaat caaaatatta tctctattaa gggggatttc aggcttaaaa cgctctttaa
     1801 ttcaaatgct tatattagct atttctttgg aagtctttgc attggttagt ccattcttta
     1861 tgcaatgggt aatagaccat gtcattgtaa ctgctgataa aaatttatta ctgaccctta
     1921 ctttgggatt tggtttactg gctatcctgc aacagttaat tagcctgtta caagcatggg
     1981 taggtatgca cctatctata actcttaatt tacaatggaa agccaatata tttaaaaggt
     2041 tacttgactt acctaatgac tatttcagta aacgacattt aggagatgtg atttcaagat
     2101 ttggttcaat agatcatatc caagaaacac taacttctac tttttttgtt ttagttttaa
     2161 atagcttaat ggctattttt actttcgtgt taatgacaat ttacagcact caattatcgc
     2221 tgattgttct tttaacactt gttttgtaca tactaattcg ttggcttgca tattacccat
     2281 taagaaatgc aacagaagaa aatattgttc atgaagccaa acaaaactca tatttcatgg
     2341 aaaccattcg tggtatccaa tcagttaaat tatttgataa acattatcaa agacatggca
     2401 cttggatgag cctatttgtg aatacagtca ataccaagct gacaacagat aaactctctg
     2461 ctttatttga attttcaaat aaactgttgt ttagcatgga aaatattatc ataatttatc
     2521 ttggtgcaag cgcaatttta gatggttcat ttacagtcgg tgttctgatg gcttttttgg
     2581 cttataaagg gcaatttgaa agcagaacag cttctctcgt tgaccaatac atccaaatca
     2641 aaatgttagg gcttcatgct gaacgtttgg ctgacattac tttaaatgaa acagaaactg
     2701 aaattattaa gtataatcat atacctaaat tagataatga acaactggtt cttaaagttg
     2761 aaaacgtctc attcagatat gctgataatg agccatatct ttttgaaaac attaatttgg
     2821 aatttaaaga taatgaagca gttgttttaa caggacaatc tggtcggggg aagtccactt
     2881 tgttaaacat tttaacaggt agcctaaaac ctgaaactgg tacagttagt attaatgggc
     2941 atgatatata tcaagtttct ccatccttta ttaggggatt gagcgggatt gttcgccaag
     3001 atgatgtcct ttttgcaggt tctattgggg aaaatatttc attttttgat gaaagcccaa
     3061 atatggagct cattgaacaa tgtgcaaaaa tggcacaaat acatgacgat atacttaaaa
     3121 tgccaatggg ctatgagacc ttgattggcg atatgggaaa tatcttatca ggtggacaaa
     3181 agcagagagt tatcttggct cgtgcattgt ataaacgacc caaaattcta tttttagacg
     3241 aagcaagtag ccatttagat gtagaaaatg aacaaaaaat taaccataac ctaaaaagtc
     3301 ttggtattat gaaaataatg gttgcacacc gccaagaaac aattcaatcg gcagataaaa
     3361 ttctgaattt aggttgaaca gaacaagact tcatttttct ttaacaaaaa gtgaagtctt
     3421 ttttcaaata atttaataga atacatgaaa atagcggttt aacgttccat ttcccaatca
     3481 tcacgactgg ctttgtgttt tggcgatttt tcagtttcct ttttctgttg aatttgttgt
     3541 tttttctgct cttgttccca tttttgggct aatttcacgg tctgagacct ttgcaaaatt
     3601 ccccaaaatt ccctaaattc ccaccaagac atttagggga tttctca
//
LOCUS       DAXIFS010000179         3566 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.179, whole genome shotgun sequence.
ACCESSION   DAXIFS010000179 DAXIFS010000000
VERSION     DAXIFS010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.179"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            76..525
                     /locus_tag="ACFOCA_001761"
     CDS             76..525
                     /locus_tag="ACFOCA_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6988426.1"
                     /translation="MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQ
                     FPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGY
                     NVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD"
     gene            599..907
                     /locus_tag="ACFOCA_001762"
     CDS             599..907
                     /locus_tag="ACFOCA_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988427.1"
                     /translation="MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGA
                     SKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
                     "
     gene            1023..1865
                     /locus_tag="ACFOCA_001763"
     CDS             1023..1865
                     /locus_tag="ACFOCA_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HFC6988428.1"
                     /translation="MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWAR
                     KQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGG
                     HLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAV
                     AREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDT
                     HGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEY
                     RRAA"
     gene            1855..2601
                     /locus_tag="ACFOCA_001764"
     CDS             1855..2601
                     /locus_tag="ACFOCA_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HFC6988429.1"
                     /translation="MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHS
                     FIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLLDGILA
                     LMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLI
                     WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSG
                     WTEQRIIIPSLSAISENMEGNSPGQNHLSA"
     gene            2623..3210
                     /locus_tag="ACFOCA_001765"
     CDS             2623..3210
                     /locus_tag="ACFOCA_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HFC6988430.1"
                     /translation="MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSA
                     YSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQN
                     GHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
                     MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK"
     gene            3216..3395
                     /locus_tag="ACFOCA_001766"
     CDS             3216..3395
                     /locus_tag="ACFOCA_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HFC6988431.1"
                     /translation="MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQL
                     QTIKRSLAKTTRTSK"
BASE COUNT          965 a          927 c          828 g          846 t
ORIGIN      
        1 attggctgcc gggtgtcagt ttttccgaca aaatccgtct aatggggtat caacagaacc
       61 aaaacaggaa cacttatgaa aatcggaaca acttggcaga cggcatccgc tatgctggtt
      121 ttgcgtctgt ttgccgcata tgaatttttg gaatcgggtt tgcaaaaatg gaacggggag
      181 aattggtttt ctgaaatcaa cgatcaattc ccattcccgt tcaacttgct gccggacgcg
      241 ttaaactgga atctcgctat gtatgcggag cttttactgc ccgtactgtt gcttttgggt
      301 ttggcaacgc gtctgtcggc attagggctg atggtcgtta ccgccgtcgc ttgggctgcg
      361 gttcacgccg gttcgggtta caatgtctgc gacaacggtt ataaaatggc tttaatttat
      421 atcgtggtat taatcccgct gcttttccag ggtgcgggcg gatggtcgct ggatacgctg
      481 ctgaaaaaac ggttttgccc ccaatgccgt ctgaagcaag attgattcag tcgtggaatc
      541 tgactttaaa cattccaacc ttatctcgtt aacttgatat tctgaaaagg aaatagaaat
      601 gaacaaaaac attgctgccg cactcgccgg tgctttatcc ctgtctttgg ccgccggtgc
      661 agttgctgcc aacaaaccgg caagcaacgc aacaggcgtt cataaatccg cccatggctc
      721 ttgcggcgcg tccaaatctg ccgaaggttc gtgcggcgcg gctggttcta aagcaggcga
      781 aggcaaatgc ggcgagggca aatgcggtgc gaccgtaaaa aaaacccaca aacacaccaa
      841 agcatctaaa gccaaggcca aatctgccga aggcaaatgc ggcgaaggca aatgcggttc
      901 taaataatcc caccccttca aaccaagccg cgtttttcag taaaatgcgg cttttttaac
      961 ggcaaacaaa gattttttaa caagcacatc attcttttgt gccatccgaa ccgggtaaaa
     1021 atatgatcca acacgcaggc ttgggctacc gccgcgactt ggcggaagac tttctctcgc
     1081 tttccgaaaa cagcccgata tgctttatcg aagccgcacc ggaaaactgg ctgaaaatgg
     1141 gcggctgggc gcgcaaacag tttgaccgtg tggcggaacg gctgccgctg gcgttgcacg
     1201 gattgtctat gtcgctgggc gggcaagcac cgctggatac tgatttgata gacggcatca
     1261 aagaaatgat gcgccgttac gattgcacgt ttttctccga ccatttgagc tactgccacg
     1321 acggcggtca tctttacgat ttgttgccgc tgccctttac cgaggaaatg gtgcatcata
     1381 cggcgcggcg tatccgcgaa gtgcaagacc gtttgggctg ccgcatcgcc gtggaaaaca
     1441 cgtcctacta tctgcattcc ccgcttgccg agatgaacga ggtcgagttc ctcaacgccg
     1501 tcgcacgtga ggccgattgc ggcattcatc tggatgtgaa caatatctac gtcaacgccg
     1561 tcaatcacgg cctgttgtcg ccggaggctt ttttgaaaaa cgttgacgca gatcgcgtgt
     1621 gctatatcca tattgccgga catgacgtgg aaacgccgga attgttgatt gatacacatg
     1681 gcgcggcagt tttgccgact gtttgggact tgctcgaact tgcctatgcc aagctgccga
     1741 cgattccgcc caccctgttg gaacgcgatt ttaatttccc gccttttgcc gaactcgaag
     1801 ccgaagtcgc caaaatcgcc gattatcaaa cgcgtgccgg aaaggaatac cgccgtgcag
     1861 cctgaaacct ccgcccaata ccagcaccgt ttcgcccaag ccatacgcgg gggcgaagcc
     1921 gcagacggtc tgccgcaaga ccgactgaac gtctatatcc gcctgatacg caacaatatc
     1981 cacagcttta tcgaccgctg ctataccgaa acgcggcaat actttgacag cgaagaatgg
     2041 agccgtctga aagaaggttt cgtccgcgac gcgcacgccc aaacgcccta ttttcaagaa
     2101 atccccggcg agttcctaca atattgccaa agcctgccgc ttttagacgg cattttggca
     2161 ctgatggatt ttgaatatac ccaattgctg gcagaagttg ctcaaattcc ggatattccc
     2221 gacattcatt attcaaatga cagcaaatac acaccttccc ctgcggcctt tatccggcaa
     2281 tatcgatatg atgttaccga tgatttgcat gaagcggaaa cagccttgtt aatatggcga
     2341 aacgccgaag atgatgtgat gtaccaaaca ttggacggct tcgatatgat gctgctagaa
     2401 ataatgggtt cctccgcgct ttcgtttgac accctcgccc aaacccttgt cgaatttatg
     2461 cctgaggacg ataattggaa aaatattttg cttgggaaat ggtcaggctg gactgaacaa
     2521 aggattatca tcccctcctt gtccgccata tccgaaaata tggaaggcaa ttccccgggc
     2581 caaaaccatc tatccgcata aaattacctt gttcccgata ctatgccgct acccgacctg
     2641 accgatgccg aattaataga gtcgcgtaaa ctgcttctgc attttgcgcg gcttcagttg
     2701 cccgaccacc ctgatttggc tgaagattta gtgcaggaaa cattgctgtc cgcatacagc
     2761 gcaggcgaca gttttcaagg cagggcactt gtcaacagct ggctttttgc catattgaaa
     2821 aacaaaatta ttgacgcatt acgtcaaatc ggaaggcaga ggaaagtctt taccacactg
     2881 gatgacgagc tactggatga agcatttgaa agccattttt cccaaaacgg gcattggacg
     2941 ccggaagggc agccgcaaca ttggaacact ccggaaaaat cattaaacaa caacgaattc
     3001 caaaaaattc tgcaaagctg cctatacaac ctgcctgaaa acaccgcacg ggtatttacc
     3061 ctgaaggaaa tactcggttt ttcatccgac gaaatacaac aaatgtgcgg tatcagcacg
     3121 tccaactacc acaccattat gcaccgcgcc cgagaatcat tgcgccaatg cctgcaaatc
     3181 aaatggttca accaagaaaa cccgaagtaa acgttatgaa aaaatgccgc gatatcgccc
     3241 tgcttctttc caaacatcag gaccgggaaa ccaccccggg cgagaagatt tccatataca
     3301 cacacctgct gttctgtccg tattgccgtg aatataaaag acaacttcaa accatcaaaa
     3361 gatcactggc aaaaacaacc agaacttcaa aataaatgcc gtctgaaaag gcttcagacg
     3421 gcataagctg acggaaacaa atcaaaccga tttactgtta tcggcagttc atccataata
     3481 cacgcttcaa aagcagcata ttcctccata cggaatatat aaatacgcaa aacacgaagg
     3541 ctgcatcaat ttgctttatt tgcctt
//
LOCUS       DAXIFS010000180         3560 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.180, whole genome shotgun sequence.
ACCESSION   DAXIFS010000180 DAXIFS010000000
VERSION     DAXIFS010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.180"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            113..3316
                     /gene="nalP"
                     /locus_tag="ACFOCA_001767"
     CDS             113..3316
                     /gene="nalP"
                     /locus_tag="ACFOCA_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endopeptidase autotransporter NalP"
                     /protein_id="HFC6988432.1"
                     /translation="MRTTPTFPTKTFKPAAMALAVATTLSACLGGGGGTSAPDFNAGG
                     TGIGSNSRATTAKSAAVSYAGIKNEMCKDRSMLCAGRDDVAVTDRDAKINAPPPNLHT
                     GDFTNPNDAYKNLINLKPAIEAGYTGRGVEVGIVDTGESVGSISFPELYGRKEHGYNE
                     NYKNYTAYMRKEAPEDGGGKDIKASFDDEAVIETEAKPTDIRHVKEIGHIDVVSHIIG
                     GRSVDGRPAGGIAPDATLHIMNTHDGTKNEIMSAAIRNAWVKLGERGVRIVNNSFGTT
                     SRAGTADHFQIANSEEQYRQALLAYSGGDKTDEGIRLMQQSDYGNLSYHIRNKNMLFI
                     FSASNDAQAQPNTLTLLPFYEKDAQKGIITVAGVDRSGEKFNGSNHCGITAMWCLSAP
                     YEASVRFTRTNPIQIAGTSFSAPIVTGTAALLLQKYPWMSNDNLRTTLLTTAQDIGAV
                     GVDSKFGWGLLDAGKAMNGPASFPFGDFTADTKGTSDIAYSFRNDISGTGGLIKKGGS
                     QLQLHGNNTYTGKTIIEGGSLVLYGNNKSDMRVETKGALIYNGAASGGSLNSDGIVYL
                     ADTDRSGANETVHIKGDLQLGGEGTLYTRLGKLLKVDGTAMTGGKLYMSARGKGAGYL
                     NRTGQRVPFLSAAKIGRDYSFFTNIETDGGLLASLDSVEKTAGSEGDTLSYYVRRGNA
                     ARTASAAAHSAPAGLKHAVEQGGSNLENLMVELDASESSATPETVETAAADRTDMPGI
                     RPYGATFRAAAAVQHANAADGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHN
                     GTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSE
                     NSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLM
                     QLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAG
                     LKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGL
                     GADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF"
BASE COUNT          946 a          987 c          968 g          659 t
ORIGIN      
        1 gacaacccct ataataatat aattcaaaat ataaaaatgg gttacatcta aacattacgg
       61 aatttttatt ccctcgcctg aattctattg tcagattcaa ggagacctca tcatgcgaac
      121 gaccccaacc ttccctacaa aaactttcaa accggctgcc atggcgttag ctgttgcaac
      181 aacactttct gcctgcttag gcggcggcgg cggcacttct gcgcccgact tcaatgcagg
      241 cggcaccggt atcggcagca acagcagagc aacaacagcg aaatcagcag cagtatctta
      301 cgccggtatc aagaacgaaa tgtgcaaaga cagaagcatg ctctgtgccg gtcgggatga
      361 cgttgcggtt acagacaggg atgccaaaat caatgccccc cccccgaatc tgcataccgg
      421 agactttaca aacccaaatg acgcatacaa gaatttgatc aacctcaaac ctgcaattga
      481 agcaggctat acaggacgcg gggtagaggt aggtatcgtc gatacaggcg aatccgtcgg
      541 cagcatatcc tttcccgaac tgtatggcag aaaagaacac ggctataacg aaaattacaa
      601 aaactatacg gcgtatatgc ggaaggaagc gcctgaagac ggaggcggta aagacattaa
      661 agcttctttc gacgatgagg ccgttataga gactgaagca aagccgacgg atatccgcca
      721 cgtaaaagaa atcggacaca tcgatgtggt ctcccatatt attggcgggc gttccgtgga
      781 cggcagacct gcaggcggta ttgcgcccga tgcgacgcta cacataatga atacgcatga
      841 tggaaccaag aacgaaataa tgtctgcagc catccgcaat gcatgggtca agctgggcga
      901 acgtggcgtg cgcatcgtca ataacagttt tggaacaaca tcgagggcag gcactgccga
      961 ccatttccaa atagccaatt cggaggagca gtaccgccaa gcgttgctcg cctattccgg
     1021 cggtgataaa acagacgagg gtatccgcct gatgcaacag agcgattacg gcaacttgtc
     1081 ctaccacatc cgtaataaaa acatgctttt cattttttcg gcaagcaatg acgcacaagc
     1141 tcagcccaac acactgaccc tattgccatt ttatgaaaaa gatgctcaaa aaggcattat
     1201 cacagtcgca ggcgtagacc gcagtggaga aaagttcaat ggctccaacc attgcggaat
     1261 tactgccatg tggtgcctat cggcacccta tgaagcaagc gtccgtttca cccgtacaaa
     1321 cccgattcaa attgccggaa catccttttc cgcacccatc gtaaccggca cggcggctct
     1381 gctgctgcag aaatacccgt ggatgagcaa cgacaacctg cgtaccacgc tgctgacaac
     1441 ggctcaggac atcggtgcag tcggcgtgga cagcaagttc ggctggggac tgctggatgc
     1501 gggtaaggcc atgaacggac ccgcgtcctt tccgttcggc gactttaccg ccgatacgaa
     1561 aggtacatcc gatattgcct actccttccg taacgacatt tcaggcacgg gcggcctgat
     1621 caaaaaaggc ggcagccaac tgcaactgca cggcaacaac acctatacgg gcaaaaccat
     1681 tatcgaaggc ggttcgctgg tgttgtacgg caacaacaaa tcggatatgc gcgtcgaaac
     1741 caaaggtgcg ctgatttata acggggcggc atccggcggt agcctgaaca gcgacggcat
     1801 tgtctatctg gcagataccg accgatccgg cgcaaacgaa accgtgcaca tcaaaggcga
     1861 tctgcagctg ggcggcgaag gtacgctgta cacacgtttg ggcaaactgc tgaaagtgga
     1921 cggtacggcg atgaccggcg gcaagctgta catgtcggca cgcggcaaag gggcaggcta
     1981 tctcaaccgt accggacaac gtgttccctt cctgagtgcc gccaaaatcg ggcgggatta
     2041 ttctttcttc acaaacatcg aaaccgacgg tggtctgctg gcttccctcg acagcgtcga
     2101 aaaaacagcg ggcagtgaag gcgacacgct gtcctattat gtccgtcgcg gcaatgcggc
     2161 acggactgct tcggcagcgg cacattccgc gcccgccggt ctgaaacacg ccgtagaaca
     2221 gggcggcagc aatctggaaa acctgatggt cgaactggat gcctccgaat catccgcaac
     2281 acccgagacg gttgaaactg cggccgccga ccgcacagat atgccgggca tccgccccta
     2341 cggcgcaact ttccgcgcag cggcagccgt acagcatgcg aatgccgccg acggtgtacg
     2401 catcttcaac agtctcgccg ctaccgtcta tgccgacagt accgccgccc atgccgatat
     2461 gcagggacgc cgcctgaaag ccgtatcgga cgggttggac cacaacggca cgggtctgcg
     2521 cgtcatcgcg caaacccaac aggacggtgg aacgtgggaa cagggcggtg ttgaaggcaa
     2581 aatgcgcggc agtacccaaa ccgtcggcat tgccgcgaaa accggcgaaa atacgacagc
     2641 agccgccaca ctgggcatgg gacgcagcac atggagcgaa aacagtgcaa atgcaaaaac
     2701 cgacagcatt agtctgtttg caggcatacg gcacgatgcg ggcgatatcg gctatctcaa
     2761 aggcctgttc tcctacggac gctacaaaaa cagcatcagc cgcagcaccg gtgcggacga
     2821 acatgcggaa ggcagcgtca acggcacgct gatgcagctg ggcgcactgg gcggtgtcaa
     2881 cgttccgttt gccgcaacgg gagatttgac ggtcgaaggc ggtctgcgct acgacctgct
     2941 caaacaggat gcattcgccg aaaaaggcag tgctttgggc tggagcggca acagcctcac
     3001 tgaaggcaca ctggtcggac tcgcgggtct gaagctgtcg caacccttga gcgataaagc
     3061 cgtcctgttt gcaacggcgg gcgtggaacg cgacctgaac ggacgcgact acacggtaac
     3121 gggcggcttt accggcgcga ctgcagcaac cggcaagacg ggggcacgca atatgccgca
     3181 cacccgcctg gttgccggtc tgggcgcgga tgtcgaattc ggcaacggct ggaacggctt
     3241 ggcacgttac agctacgccg gttccaaaca gtacggcaac cacagcggac gagtcggcgt
     3301 aggctaccgg ttctgacgga caggaagcag acagccgcaa agatcacggt ctttgcggct
     3361 gtttcttatg aaaagaaaac cctattccaa ttgcctgctt ctattgtttc aagacttctt
     3421 ccaaagattc ggcattaatc agatgtatag cggattaaca aaaatcagga caaggcggcg
     3481 aagccgcaga cagtacaaat agtacggaac cgattcactc ggtgcttgag caccttagag
     3541 aatcgtttct ttgagctaag
//
LOCUS       DAXIFS010000181         3541 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.181, whole genome shotgun sequence.
ACCESSION   DAXIFS010000181 DAXIFS010000000
VERSION     DAXIFS010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.181"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(231..1295)
                     /locus_tag="ACFOCA_001768"
     CDS             complement(231..1295)
                     /locus_tag="ACFOCA_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6988433.1"
                     /translation="MEKEFRILNIVSAKIWGGGEQYVYDVSKALGLRGCTMFTAVNKN
                     NELMHRRFSEVSSVFTTRLHTLNGLFSLCALTRFIRENRISHLMIHTGKIAALSILLK
                     KLTGVRLIFVKHNVVANKTDFYHRLIQKNTDRFICVSRLVYDVQTADNPFKEKYRIIH
                     NGIDTDRFPPSQEKPDSRFFTVAYAGRISPEKGLENLIEACVILHRKYPQIRLKLAGH
                     GHPDYMCRLKRDVSASGAEPFVSFEGFTENIASFYRQSDVVVLPSLVPEAFGLSLCEA
                     MYCRTAVISNTLGAQKEIVEHHQSGILLDRLTPESLADEIERLVLNPEAKNALATAAH
                     QCVTARFTINHTADKLLDAI"
     gene            complement(1296..2054)
                     /locus_tag="ACFOCA_001769"
     CDS             complement(1296..2054)
                     /locus_tag="ACFOCA_001769"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6988434.1"
                     /translation="MKKVSVLIVAKNEANHIRECIESCRFDKEVIVIDDHSTDNTAEI
                     AEGLGAKVFQRHLNGDFGAQKTFAIEQAGGEWVFLIDADERCTPELSDEISKIVQTGD
                     YATYFVERRNLFPNHPATHGAMRPDSVCRLMPKKDSSVQGKVHETVQTPYPKRRLKHF
                     MYHYTYDNWEQYFNKFNKYTSISAEKYREQGKPVRFVRDIILRPIWGFFKIYILNKGF
                     LDGKMGWIMSVNHSYYTMIKYVKLYYLYKSGGKF"
     gene            complement(2129..2204)
                     /locus_tag="ACFOCA_001770"
     tRNA            complement(2129..2204)
                     /locus_tag="ACFOCA_001770"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2169..2171),aa:Ile,seq:cat)
     gene            complement(2258..3394)
                     /locus_tag="ACFOCA_001771"
                     /pseudo
     CDS             complement(2258..3394)
                     /locus_tag="ACFOCA_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247614.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            complement(3339..>3541)
                     /locus_tag="ACFOCA_001772"
     CDS             complement(3339..>3541)
                     /locus_tag="ACFOCA_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6988435.1"
                     /translation="SLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRV
                     LRKYSGLARTFPRIGSATGCAD"
BASE COUNT          802 a          854 c          937 g          948 t
ORIGIN      
        1 gtactggttt ttgttagtct actatacatt gtaacaaagc acttgatgcg gcagcacaag
       61 ccggggaaga cgctgcaaaa ctttgccaat aggctgcgta atatcggggg atattgggat
      121 tttcttattt ttaaggatgg attcggggtg tttctttcca atgaacgaat ataatttggc
      181 ggtttgttgc atcaaaggct ttcagacggc atatgccgtc tgaaagcagt ttatattgca
      241 tccaataatt tgtcggcggt atggttgatg gtaaaacggg cggtgacgca ttgatgagct
      301 gccgttgcca gtgcgttttt tgcttcgggg tttaagacga ggcgttcgat ttcgtccgcc
      361 aaagattcag gcgtaagcct atccagcaga atccccgatt gatgatgttc gacaatttcc
      421 ttttgcgccc ccaaagtatt ggaaatcacc gccgttcggc agtacatcgc ctcgcataat
      481 gacaaaccga atgcctccgg gacgaggctg ggcaaaacca cgacatcgct ttggcggtaa
      541 aacgaagcaa tgttttcggt aaacccttca aaagaaacaa atggttctgc tcctgaagca
      601 gatacgtccc gcttcaggcg gcacatataa tcaggatgtc cgtgccctgc caatttgagt
      661 ctgatttgag gatatttccg atgcaatatc acacaggctt caattaggtt ttccaatcct
      721 ttttccggac tgatcctgcc ggcgtaggcg acggtaaaaa aacggctgtc gggtttttct
      781 tgagagggag ggaaccgatc ggtatcgata ccgttatgaa taatccggta tttttcttta
      841 aagggattgt cggcggtttg cacatcgtaa accagacggg aaacgcaaat aaagcggtct
      901 gtgtttttct gtatcaggcg gtggtaaaaa tcggttttgt tggcgacgac attatgtttg
      961 acaaatatca ggcgcacccc ggtcagtttt ttcaaaagta tggataaggc ggcaattttg
     1021 ccggtgtgta tcatcaggtg ggaaatgcgg ttttcccgga taaagcgggt aagcgcgcag
     1081 agcgaaaaca gcccgttgag cgtgtgaagg cgtgtcgtga aaacggaaga aacttcggaa
     1141 aagcgtctgt gcatcaactc attattttta ttgacggcgg taaacattgt gcagccccga
     1201 agccccaatg cttttgaaac atcatagaca tattgttcgc ccccacccca aatcttggcc
     1261 gatacgatat ttaatatcct gaattctttt tccatttaaa attttccgcc agatttgtac
     1321 agataatata gtttgacata tttaatcatc gtgtaatagc tgtggttgac ggacataatc
     1381 caacccattt ttccatcaag aaaccctttg ttcagaatat aaattttgaa aaaaccccaa
     1441 atcggacgga ggataatgtc cctaacgaaa cgcacgggct ttccctgctc tcggtatttc
     1501 tcggctgaga tggaagtata tttgttgaac ttgttgaaat attgttccca gttgtcgtac
     1561 gtataatggt acataaaatg tttcagacgg cgtttggggt agggggtttg tacggtttcg
     1621 tgtactttgc cttgcaccga actgtctttc ttcggcatca aacggcatac gctgtcggga
     1681 cgcatcgcgc cgtgtgtggc gggatggttg gggaaaaggt tgcggcgctc gacaaaatag
     1741 gtggcataat cgccggtttg gacaattttt gagatttcat cagatagttc cggcgtgcag
     1801 cgttcgtctg catcaatcag gaaaacccat tctccgcctg cctgttcgat ggcaaatgtt
     1861 ttttgcgctc cgaaatcccc gttcaaatgc cgttggaaga cttttgcacc caaaccctcg
     1921 gcaatttcgg cagtattgtc ggtgctgtgg tcgtcgataa cgataacttc tttatcgaaa
     1981 cggcaacttt caatacattc ccgaatgtgg tttgcttcgt ttttggcaac aatcaatacg
     2041 ctgacttttt tcattatcaa ggtttctcaa agcattttgg tttcacaggg cggcaaaaaa
     2101 gcccaaacat acgtccgggc ttgggaattg gtgggtccgg tggggttcga acccacgacc
     2161 aagggattat gagtcccctg ctctaacccc tgagctacag acccgtcaag agtaggcgcg
     2221 tattgtatag catagcggtg ggattgacaa acttatttca tccgatgatt aagacgcagt
     2281 tgcttccccc gaaggcaaac gatgagctgg cggcaatgcg tttttcggtt tcccagcggc
     2341 tgccgctgcc ggtcaggttg atggcgggca ggttggggtc gttctgcccg tcccaaagcc
     2401 ggggcggaag ttttccttcg ggattgcttt gccggttggc aatgccccac gcgaacgcgg
     2461 cttcgattgc gtccgccgcg cccagcgtgt gtccggtttg cggcttggtg gacgtgcagg
     2521 gcgtattgtt gccgaaaacc gctgcaacgg cgcggctttc catattgtcg ttgtggtgcg
     2581 tcccggtgcc gtgcagatta atccagccga tgtcttcggg cgcaagacct gcgtgttgca
     2641 atgccgtctg aaaggcaagg attgcgcctt acgcgtcggg gcggggcgtg gaaatatggt
     2701 aggcatcgct gttggctccg tagccgacga gttcggcgta aattttcgca ccgcgccgtt
     2761 tggcgtgttc caattcttcc agcacgaaaa tccccgcgcc ttcgccgatg accagcccgt
     2821 cgcggttcgc gtcgtatggg cgcggggttt tttccggttc gccgttgcgg cggctggcgg
     2881 cataaagcga gtcgaaaaca tacacttcgg acgggaaaaa ttcttcgcct ccgcccgcca
     2941 gcatcatatc ggtcagaccg tatttgatgg cttcgtaggc ataacctatg ccttggctgc
     3001 cggacgaaca cgcgctcgat gtcgggatga tgcgtccttt cagcccgaaa aagatgccga
     3061 tattggcggc ggcggtgtgc ggcatcatac gcacataggt gttggcactg aagttgcgcg
     3121 acatgccggt cagcaacaat tcgcctacat cgccgatgtc tttggtgctg ccgctggaag
     3181 agccgcaggc aacgcccatg cgtccgtcag taatgctttc gtctccgagc aaaccggcat
     3241 ccgtcaaagc ctgctccgcc gcatcgacgc acaaatacga cacacgcccc atacttctga
     3301 gctgcttgcg cgtccaatgt ttcggcggcg cgtaattttc aatcggcgca cccagttgcg
     3361 cttccaattc ggggaaacgt tcgtgccaat ccactatatt ttcgcaagac gcgttttgcc
     3421 tgattccaaa agttctcaat gccgttaatg tggttctgac ggtctgcaaa ttccttggaa
     3481 tggttgatgc ggtaatggat aaaaccgctc acgtccaact tgtcgcagct gctcagacta
     3541 t
//
LOCUS       DAXIFS010000182         3535 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.182, whole genome shotgun sequence.
ACCESSION   DAXIFS010000182 DAXIFS010000000
VERSION     DAXIFS010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.182"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(36..761)
                     /gene="aat"
                     /locus_tag="ACFOCA_001773"
     CDS             complement(36..761)
                     /gene="aat"
                     /locus_tag="ACFOCA_001773"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFC6988436.1"
                     /translation="MRIPLLAPDNYAFPDPAYALARCDGLVGVSRDLDAGRLLEAYRN
                     GVFPWFLRDGWFFWYAVGPRAVIVPERLHVPRSLEKTLRNCSYRVTVNGCFAEVVAHC
                     AAAVRPNQDGTWIAPEFQTAYLKLHEMGYAHSFECHYPDENGKTRLAGGFYGVQIGRV
                     FYGESMFALQPDASKIAFACAVPFLASLGVELIDCQQDTGHMRRFGSELLPFADFAER
                     LRMLNAVPLKEEIGRREVACKGL"
     gene            complement(831..1265)
                     /gene="fur"
                     /locus_tag="ACFOCA_001774"
     CDS             complement(831..1265)
                     /gene="fur"
                     /locus_tag="ACFOCA_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HFC6988437.1"
                     /translation="MEKFSNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRI
                     LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
                     EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
     gene            1492..1869
                     /locus_tag="ACFOCA_001775"
     CDS             1492..1869
                     /locus_tag="ACFOCA_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6988438.1"
                     /translation="MNKTLILVLSALFSLTACSVERVSLFPSYKLKIIQGNELEPRAV
                     AALRPGMTKDQVLLLLGSPMLRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
                     RAEGDALQNAAEALRAKQNADKQ"
     gene            1879..2688
                     /gene="dapB"
                     /locus_tag="ACFOCA_001776"
     CDS             1879..2688
                     /gene="dapB"
                     /locus_tag="ACFOCA_001776"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFC6988439.1"
                     /translation="MIPLKIAIAGVNGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
                     LDAGYAVGLKTGIAISDDVDTVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
                     FDDAGKAAIQAAGEKTGVVFAANFSVGVNLTFHLLDTVARVLNEGYDIEIIEGHHRHK
                     VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
                     ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
     gene            complement(2952..3362)
                     /locus_tag="ACFOCA_001777"
     CDS             complement(2952..3362)
                     /locus_tag="ACFOCA_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988440.1"
                     /translation="MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFP
                     QEIPTPNYTDWVKIKFKQFSYLKFIYGYATKNQDKNIKNVLELGELKQDDEILDYGGA
                     LEVIGSRYDLPTGFSIDIVCREIELEFLDQESFN"
BASE COUNT          928 a         1071 c          760 g          776 t
ORIGIN      
        1 accatatttg aacctgaccg aagcataagc cgccatcaaa gccccttgca cgccacttcg
       61 cgccgcccga tttcctcttt caacggcacg gcgttcaaca tccgcagacg ttcggcaaaa
      121 tccgcaaacg gcagcagctc cgaaccgaaa cggcgcatat gccccgtatc ctgctggcag
      181 tctatcagtt ccacacccaa agacgcgaga aacggcacgg cgcaggcaaa cgcgattttc
      241 gacgcatccg gttgtaatgc gaacatcgat tcgccgtaaa acaccctgcc gatctgaacg
      301 ccgtaaaacc cgcccgccaa cctcgtttta ccgttttcat cgggataatg gcactcaaac
      361 gaatgcgcgt atcccatttc gtgcagcttc aaatatgccg tctgaaactc gggcgcaatc
      421 caagttccgt cctgattcgg gcgcaccgct gccgcacaat gcgcgaccac ttccgcaaaa
      481 cagccgttga ccgtaacccg atagctgcag ttgcgtagcg ttttctccag cgagcgcgga
      541 acgtgcagac gttcgggaac aatcaccgca cgcggcccga ccgcatacca aaaaaaccaa
      601 ccgtctcgca aaaaccaagg aaacacgccg ttccgatacg cctcgagcag ccgccccgcg
      661 tccaaatccc tgctcacgcc gaccagcccg tcgcaccgtg ccaaagcata ggcaggatcg
      721 ggaaaggcat aattgtcagg ggcaagcagc ggaatacgca tggcagttct ccaaaaacac
      781 agacggcatc caaaatcatg aatgccgtct gaacaacaaa ccgtccggat ttaacgtttg
      841 cccttggcct gacagtcgct gcacacgccg tacatataaa gcgcgtgatc gacgatgcgg
      901 tagccgtttt cctcggcgat tttgtcttgc agggcttcga tttcgggatt gtggaattcc
      961 gttacctcgc cgcacttcac acagacgata tggtcgtggt ggtcgccctt gtccaactca
     1021 taaaccgcct tgcccgtttc aaaatggtgg cgttgcaaaa tgcccgcctg ctcaaattgc
     1081 gtcagcacgc gataaatcgt cgccacaccg atttccacac cctcttccaa caaaatacgg
     1141 tacacatcct cggcactcaa atgctcttcc gcatgagtct cgaacaaatc caaaatcttc
     1201 aaacgcgggc cggtaacttt cagtccactg tctttcagtt gcgcaatgtt gctgaatttt
     1261 tccataatat tcaatatccc tgtaaaataa tagacgctat aatacgcaat ttcagcctgc
     1321 ttgcccacta tcacaccata gcagtttgca atagcaaaac cgcaacggcg gacgggcagt
     1381 cggacacaga cagggtgaaa taccgcttaa gcgtatgatt atcgttcgct tttataaaat
     1441 attcaagcag tgctacacta gacatcccga tttgcacaga aaggttctcc cgtgaacaaa
     1501 accctcatac tcgtcctttc cgccctgttc agcctgaccg cgtgcagcgt cgaacgcgtt
     1561 tcactgttcc cctcgtacaa actcaaaatc atacagggca acgaactcga accccgcgcc
     1621 gttgccgccc tgcgccccgg catgaccaaa gaccaagtcc tgctcctgct cggcagcccc
     1681 atgctgcgcg acgcattcca taccgaccgc tgggactata ccttcaacac ctcccgcaac
     1741 ggcatcatca aagaacgcag caatctgacc gtctattttg aaaacggcgt gctcgtacgc
     1801 gccgaaggcg acgccctcca aaatgccgcc gaagccctcc gcgcgaaaca aaacgcagac
     1861 aaacaataag gaacacacat gataccgctc aaaatcgcca tcgccggcgt caacggccgc
     1921 atggggcgcg tattggttga agccgtcaac aaccatcccg acaccgtcct ttccggcgcg
     1981 ctcgaacact cgggctcaga agccctcggg ctggacgcag gctacgccgt cggactcaaa
     2041 accggcatcg ccatttcaga cgacgttgac accgttctcg cacaaagcga cgtactcatc
     2101 gactttaccc gccccgagcc gaccctcaaa cacctgcaaa aatgcgttga aaaacaagtc
     2161 aacatcatca tcggcacaac aggcttcgac gatgcgggca aagccgccat ccaagccgca
     2221 ggcgaaaaaa caggcgttgt cttcgccgcc aacttcagcg tcggcgtcaa cctcaccttc
     2281 cacctcctcg acaccgtcgc ccgcgtatta aacgaaggct acgacatcga aatcattgaa
     2341 ggtcaccacc gccacaaagt cgatgccccc agcggcaccg cgttacgcat gggtgaagtc
     2401 atcgccggcg cgctcggccg cgacctcaaa caatgcgccg tttacggccg tgaaggccac
     2461 accggtccgc gcgatccgtc caccatcggc tttgccaccg tccgcgcagg cgacatcgtc
     2521 ggcgaccaca ccgccctctt cgccaccgac ggcgaacgcg tggaaatcac ccacaaagcc
     2581 agcagccgca tgacctttgc cgccggtgcc gtccgcgccg cagtttgggt aaacggcaaa
     2641 acgggtttgt acgatatgca ggatgtactc gggctgaaca accgttaacc cccatacaaa
     2701 atgccgtctg aaaagatatt gttcagacgg cattttgccg acaggctccg tatcggcata
     2761 tcaatgtttc aacacacagg acgacacata aagcgtcgcc ctatgtgttg ccctgattcg
     2821 gaaggggtta cgcccctccc aaataaagtc tgattctacc gccccgaagg acagatgtcc
     2881 gagtggcggg gtttcaaccg aaaaggaaat acgataaagt tgcctgctca gcataacaag
     2941 ctacggctcg tttaattgaa actctcctga tctaaaaatt ctaactctat ttcccggcaa
     3001 actatatcta tactaaaacc ggtcggaaga tcatacctac tgcctatcac ttccagcgca
     3061 cctccataat ccaagatttc atcatcctgc tttaattctc caagttccaa tacatttttg
     3121 atatttttat cttggttctt cgtggcgtat ccatagataa atttcagata gctgaactgc
     3181 ttgaatttaa tttttaccca gtctgtataa tttggtgtag gaatctcttg aggaaagtcc
     3241 ggataatcca cattctggac gatgatatgg aattcatcgt ttttcaaagt atagtttaat
     3301 agagtgccct catatatata cagaaattga taatcttttt ttggaatggt ataagttgtc
     3361 atattatttt accttttcaa aaacaatgag tttaagattt tttgagtcca agttggttct
     3421 actactctta tgaaatttca gttgtttaaa ctcttccttt attttaagga atttttcaac
     3481 tagccgagaa caaactggag caaaatggac gattgagttt aggaatcaac ctgat
//
LOCUS       DAXIFS010000183         3482 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.183, whole genome shotgun sequence.
ACCESSION   DAXIFS010000183 DAXIFS010000000
VERSION     DAXIFS010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.183"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            203..1675
                     /gene="pyk"
                     /locus_tag="ACFOCA_001778"
     CDS             203..1675
                     /gene="pyk"
                     /locus_tag="ACFOCA_001778"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFC6988441.1"
                     /translation="MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVR
                     FNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
                     LLDAALEGEGTREAVGLDYRDLPDDVAAGDVLWLDDGLLTLTVESVEGSRIITRVENS
                     HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
                     EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
                     RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
                     YPFETVSQMAIICAAAEKEQDSLNGVAEQAEYPEAVSTNLAVAGGAVSVARAVHAKAI
                     VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
                     VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
     gene            1983..3383
                     /locus_tag="ACFOCA_001779"
     CDS             1983..3383
                     /locus_tag="ACFOCA_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpP1/FadL family transporter"
                     /protein_id="HFC6988442.1"
                     /translation="MTPSALKKTVLLLGTAFAAASAQASGYHFGTQSVNAQSTANAAA
                     AEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFTGLPVQGSKSGKI
                     TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
                     AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIKSKAEILTAKPPKPNGVAEAAKIQAD
                     GHADVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWS
                     TMLAANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFE
                     KEKTIVNGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMN
                     SLPDGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTSYRTAKASGNDVDSKGASSARF
                     KNHADIIGLQYTYKFK"
BASE COUNT          900 a         1052 c          886 g          644 t
ORIGIN      
        1 aatttagcct aagtcataaa accgtgtaat tttgcaccaa aaaaggcggt ttgcaggtaa
       61 aatatcaaac tattaattta aatcatattt ttacagaata ttccgccgcg ttcatcaaat
      121 ggacatcaaa ccggttccaa atttctgtaa ttttgtaaca aaataccgca aaacacccga
      181 ttgagaccaa aaggactttc atatgaacca gacaagccgc gatctgaccc gcatcagcca
      241 caacaccaaa atcgtcgcca cccttgggcc gggcagcaac aacgtcgaac tgttggaaga
      301 tatgatccgc gtcggcggcc tgaacgtcgt ccgcttcaac ttcagccacg gcacgcccga
      361 attccatcag gaaaacgccc gcatcgtgcg cgaagcggca aaacgcgccg gacaggaaat
      421 cgccatcatt gccgacctgc aagggccgaa aatccgcgtg ggcaaaatcg ccggcggcgg
      481 catcgaattg aacaaaggcg aaacgctgct actggatgcc gcgcttgaag gcgaaggcac
      541 gcgcgaggcg gtcggtttgg actaccgcga cctgcccgat gacgttgccg caggcgatgt
      601 cttgtggctg gacgacggcc tgctgaccct gaccgtggaa tccgtcgaag gcagcaggat
      661 tatcacaagg gtggaaaaca gccacgtcct gaaaagcaac aagggcatca acaaacgcgg
      721 cggcggtctg tccgcaggcg cgttgaccga aaaagacttc cgcgacctga aaaccgcgat
      781 tgccatcggt tgcgactacc tcgccatcag ctttgtgaaa tccgccgaag atttgcatat
      841 cgcgcgcgcc aaagtcgaag aagaaatgaa aggcagcacg gccgtgcgcc ccggtttggt
      901 ttccaaaatc gaacgcgtag aagcgattga aaacttggac gaaatcatcc tcgccggcga
      961 cggcattatg gttgcgcgcg gcgacttggc ggtcgaagtc ggacacgccg ccgtccccgc
     1021 cctgcaaaaa cggatgatcc gccgcgcccg cgagttgcgc cgcttcagca ttacggcgac
     1081 gcaaatgatg gaatcgatga ttaccaaccc cgtaccgacc cgcgcggaag tcagcgatgt
     1141 ggcaaacgcg gtattggacg gtaccgatgc ggtgatgtgt tccgccgaaa ccgccgtcgg
     1201 cgcgtatccg tttgaaaccg tcagccaaat ggcaattatc tgcgcggctg cggaaaaaga
     1261 gcaggattcg ctcaacggcg ttgccgaaca ggcggagtat cccgaagcgg tcagcaccaa
     1321 cctggcggtt gccggcggcg cggtcagcgt ggcgcgcgcg gttcacgcca aagcgattgt
     1381 cgccctgacc gaaagcggtt cgaccgcctt tgaaatcagc cgccacaaca tcaccctgcc
     1441 gattttcgcg ctgaccccga gcgtttccgc ccaacgccgt atggcgatgt accgcggcgt
     1501 gcgcccgctg attttggcaa ccagtaccga ccacgacacg gcgttgaacg aagtcgaaac
     1561 catgctggtg gaacacaaca tcctgcattc cggcgaccag tacatcatca ccagcggttc
     1621 gcaaatgcgc gaatccggtt cgaccaacac actggaagtg ctgcgcgtca aataatccgc
     1681 cctgagtgga aaatgccgtc tgaagccgat gcccgaggct tcagacggca ttttttgcgg
     1741 cggcgcggcg gttcgggcaa actgaaaaaa ttgtgcaaat ccggcaacat cggataaaat
     1801 tgagtaccta tactaaagcg aaacaaggca tttccgactg ccttttttat agtggattaa
     1861 atttaaacca gtacggcgtt gccttgccgt actatctgta ctgtctgcgg cttcgtcgcc
     1921 ttgtcctgat ttttgttaat ccactatatt tatccaccgt ccgccttttt acggaaaccg
     1981 aaatgacccc ttccgcactg aaaaaaaccg tcctactgct cggcactgcc tttgccgccg
     2041 catccgcaca agcctccggc taccacttcg gcacacagtc ggtcaacgcg caaagcacgg
     2101 caaatgccgc cgccgcagaa gccgccgacg catcgaccat cttctacaac cctgccggcc
     2161 tgaccaaact cgacagcagc cagatttccg tcaacgccaa catcgtgctg cccagcattc
     2221 attatgaggc ggattccgcc accgacttta ccgggcttcc cgtccaaggt tcgaaaagcg
     2281 gcaaaatcac caaaaccacg gtcgcgcccc acatctacgg cgcatacaaa gtcaacgaca
     2341 atctgaccgt gggcttgggc gtgtacgtcc ccttcggctc tgccaccgaa tacgaaaaag
     2401 attccgtgtt gcgccacaac atcaacaaac tcggtctgac cagcatcgcc gtcgaacctg
     2461 tcgccgcatg gaaactcaac gaccgccatt ccttcggcgc aggcatcatc gcccaacata
     2521 cttccgccga actgcgcaaa tatgccgact gggggattaa gagtaaagca gagatattga
     2581 cggcaaaacc gcccaaacct aacggtgtag ccgaagctgc aaaaattcag gccgacggac
     2641 acgccgatgt caaaggcagc gattggggct tcggctacca actggcgtgg atgtgggaca
     2701 tcaacgaccg cgcgcgcgtg ggcgtgaact accgttccaa agtctcgcac acgctcaaag
     2761 gcgatgccga atgggcggca gacggcgcgg cggcgaaagc aatgtggagt acgatgcttg
     2821 cagcaaacgg ctacacggcg aatgaaaaag cccgcgttaa aatcgttacg cctgagtctt
     2881 tgtccgtaca cggtatgtac aaagtgtccg ataaagccga cctgttcggc gacgtaactt
     2941 ggacgcgcca cagccgcttc gataaggcgg aactggtttt tgaaaaagaa aaaaccatcg
     3001 tcaacggcaa atccgaccgc accaccatca cccccaactg gcgcaacacc tacaaagtcg
     3061 gcttcggcgg ttcttatcaa atcagcgaac cgctgcaact gcgcgccggc atcgcttttg
     3121 acaaatcgcc cgtccgcaac gccgactacc gcatgaacag cctgcccgac ggcaaccgca
     3181 tctggttctc cgccggcatg aaataccata tcggcaaaaa ccacgtcgtc gatgccgcct
     3241 acacccacat ccacatcaac gacaccagct accgcacggc gaaggcaagc ggcaacgatg
     3301 tggacagcaa aggcgcgtct tccgcacgtt tcaaaaacca cgccgacatc atcggcctgc
     3361 aatacaccta caaattcaaa taaacggccc gccgtttgat tgtagaaatg ccgtctgaaa
     3421 cagatttccg tttcagacgg cattgtttta ggcgcgattt atagtggatt aacaaaaatc
     3481 ag
//
LOCUS       DAXIFS010000184         3434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.184, whole genome shotgun sequence.
ACCESSION   DAXIFS010000184 DAXIFS010000000
VERSION     DAXIFS010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.184"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..1080
                     /gene="dapA"
                     /locus_tag="ACFOCA_001780"
     CDS             205..1080
                     /gene="dapA"
                     /locus_tag="ACFOCA_001780"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFC6988443.1"
                     /translation="MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGT
                     TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADFTLS
                     VVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGV
                     KEASGNIGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMC
                     RAALQGDIALARKLNDRLIPIYDTMFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTEG
                     GQAKVRAALKASGQL"
     gene            1089..2285
                     /gene="bamC"
                     /locus_tag="ACFOCA_001781"
     CDS             1089..2285
                     /gene="bamC"
                     /locus_tag="ACFOCA_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HFC6988444.1"
                     /translation="MPSEPFGRHNATNTLISITQDDTMTLIKPVIAALALIGLAACSG
                     SKTEQPKLDYQSRSHRLIKLEVPPDLNNPDQGSLYRLPAGSGAVRASDLEKRRTPAVQ
                     QPADAEVLKSVKGVRLERDGSQRWLVVDGKSPAEIWPLLKAFWQENGFDIKSEEPAIG
                     QMETEWAENRAKIPQDSLRRLFDTVGLGGIYSTGERDKFIVRIEQGKNGVSDIFFAHK
                     AMKEVYGGKDKDTTVWQPSPSDPNLEAAFLTRFMQYLGVDGQQAENASAKNPTLPAAN
                     EMARIEGKSLIVFGDYGRNWRRTALALDRIGLTVVGQNTERHAFLVQKAPNESNAVTE
                     QKPGLFKRLLGKGKAEKPAEQPELIVYAEPVANGSRIVLLNKDGSAYAGKDASALLGK
                     LHSELR"
     gene            complement(2342..3274)
                     /gene="pip"
                     /locus_tag="ACFOCA_001782"
     CDS             complement(2342..3274)
                     /gene="pip"
                     /locus_tag="ACFOCA_001782"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HFC6988445.1"
                     /translation="MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAG
                     ASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWL
                     VFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETAWLNEAGGVSRIYPEQWQKF
                     VAPIAENRRNRLIEAYHGLLFHQDEEVCLSAAKAWADWESYLIRFEPEEVDEDAYASL
                     AIARLENHYFVNGGWLQGDRAILNNIGKIQHIPTIIVQGRYDLCTPMQSAWALSKAFP
                     EAELRVVQAGHRAFDPPLADALVQAVEDIFPRLL"
BASE COUNT          914 a         1135 c          761 g          624 t
ORIGIN      
        1 tgttaatcca ctataaatcc gacggcaccg gcataaaccg gcgaatataa taaaatgatt
       61 tcaaacagga aaaatcaatt tccaccatac ctttcggcgc aaacgcccca catctgcaac
      121 ccgccggatt tcacacctgc ggtaaagtag gctacaatca gaagcattac cgccccctac
      181 accacaactg ataaaaggtt ctgtatgtta caaggtagcc tggttgccct gattaccccg
      241 atgaatcaag acggcagcat ccattacgaa caactccgcg atttgatcga ctggcacatt
      301 gaaaacggca cggacggcat cgttgccgtc ggcacgacag gcgaatccgc caccctctcc
      361 gtcgaagaac acaccgccgt catcgaagcc gtcgtcaaac acgttgccaa acgcgtcccc
      421 gtcatcgccg gcacaggggc aaacaacacc gtcgaagcca tcgccctttc ccaagccgcc
      481 gaaaaagccg gtgcagactt cactctctcc gtcgtcccct attacaacaa gccctcccaa
      541 gaaggcattt accaacattt caaaaccatc gccgaagcca cttcgattcc gatgattatc
      601 tacaacgtgc ccggccgtac cgtcgtcagc atgactaacg acactatcct gcgccttgcc
      661 gaaatcccca acatcgtcgg cgtgaaagaa gccagcggca acatcggcag caacatcgaa
      721 ctcatcaacc gcgcgcccga aggcttcgtc gtcctttccg gcgacgacca taccgccctg
      781 ccgttcatgc tgtgcggcgg acacggcgtg attaccgtag ccgccaacgc cgcacccaag
      841 ctctttgccg atatgtgccg cgccgcgctg caaggcgaca ttgccctcgc acgcaagctc
      901 aatgaccggc tgattccgat ttacgacacc atgttctgcg aacccagccc cgccgcaccg
      961 aaatgggcgg tatccgccct gggcagatgc gaaccgcacg tccgcctgcc gctcgttccg
     1021 ctgacggaag gcggacaggc aaaagtccgc gccgccctga aagcctcagg acaactctaa
     1081 atataactat gccgtctgaa ccgttcggac ggcataacgc aacaaacact ttaatatcca
     1141 tcacacagga tgacacgatg acccttatca aacccgtcat tgccgcgctc gcactcatcg
     1201 ggcttgccgc ctgctccggc agcaaaaccg aacagcccaa gctcgactac caaagccggt
     1261 cgcaccgcct gatcaaactt gaagtcccac ccgatttgaa caaccccgac caaggcagcc
     1321 tctaccgcct gcctgccggt tcgggagccg tccgcgccag cgatttggaa aaacgccgca
     1381 cacccgccgt ccaacagcct gccgatgccg aagtattgaa aagcgtcaaa ggtgtccgcc
     1441 tcgagcgcga cggcagccaa cgttggcttg tcgttgacgg caaatcccct gccgaaatct
     1501 ggccgcttct gaaagccttt tggcaggaaa acggcttcga catcaaatcc gaagaacccg
     1561 ccatcggaca aatggaaacc gagtgggcgg aaaaccgtgc caaaatcccc caagacagct
     1621 tgcgccgcct attcgacaca gtcggtttgg gcggcatcta ctccaccggc gagcgcgaca
     1681 aattcatcgt ccgtatcgaa cagggcaaaa acggcgtttc cgacatcttc ttcgcccaca
     1741 aagccatgaa agaagtgtac ggcggcaaag acaaagacac gaccgtatgg cagccctccc
     1801 cgtccgatcc caacctcgaa gccgctttcc tgacgcgctt tatgcaatat ttgggcgttg
     1861 acggacagca ggcggaaaac gcatcggcaa aaaacccgac cctgcccgcc gccaacgaaa
     1921 tggcgcgtat cgaaggcaaa agcctgattg tctttggcga ctacggcaga aactggcggc
     1981 gcaccgcgct cgccctcgac cgcatcgggc tgaccgtcgt cggtcaaaac accgaacgcc
     2041 acgctttcct ggttcaaaaa gccccgaacg aaagcaatgc agttaccgaa caaaaacccg
     2101 gcctgttcaa acgcctgctg ggcaaaggca aagcggagaa acctgccgaa cagccggaac
     2161 tgattgtcta tgccgagcct gtcgccaacg gctcgcgcat cgtcctgctc aacaaagacg
     2221 gcagcgcata tgccggcaaa gacgcatccg cattattggg caaactccat tccgaactgc
     2281 gttaaaccat tcaaaacaaa agcagcttcc aaacagaagc tgctttttta tgcggaactt
     2341 tttacaacaa ccgaggaaaa atatcctcaa ccgcctgaac caacgcatcc gccaaaggcg
     2401 gatcgaacgc acgatgccct gcctgaacca ccctcaattc cgcttccgga aaggctttcg
     2461 acagcgccca cgcactctgc atcggcgtac acaaatcata ccgcccctgc acgataatgg
     2521 tcgggatatg ctgtattttg ccgatattgt tcaaaatcgc cctatcgccc tgcaaccagc
     2581 cgccgttgac aaaataatgg ttttccaaac gcgcgattgc cagcgaggca taagcatctt
     2641 catccacttc ctccggctcg aaacggatca gatagctttc ccaatccgcc caagcctttg
     2701 cggcagacag gcacacttct tcatcttgat gaaacagcaa cccgtgatac gcctcaatca
     2761 gccggttccg ccgattttca gcaatcggcg cgacaaattt ttgccattgt tccggataaa
     2821 tccggctcac accgcccgcc tcgttcagcc acgccgtttc agacggcctg cacaaaaata
     2881 tcccgcgcaa caccaatccc tttacccgtt ccggatgggt ttgggcataa gccagcgaca
     2941 aagtactgcc ccacgaaccg ccgaacacca gccatttccc gatacccagc atttcacgga
     3001 ctttttcaat atccgccacc aaatcccaag tcgtattgtc ttccgcacaa gcatacgggc
     3061 gcgaacgtcc gcaaccgcgc tggtcaataa tgacgatgcg gaacacatcg ggattgaaaa
     3121 aaccccgaca ttcaggcgaa gcccccgccc ccggtccgcc gtgtaaaaaa atgaccggca
     3181 caccgtcggg attgcccgac tcttcccaat aaatttgatg aatttcagac acctgcaagt
     3241 atccgctatg aaaaggctgt tttatctcat acatcatctt ctcccatatt gcctctgaca
     3301 atccgaacat tcccacacgc aacatcacgc acgaaacaca agccgccccg aaaggcaaat
     3361 tccgaaaaat cgcgatatag tggattaaca aaaatcagga caaggcgacg aagctgcaga
     3421 cagtacagat agta
//
LOCUS       DAXIFS010000185         3390 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.185, whole genome shotgun sequence.
ACCESSION   DAXIFS010000185 DAXIFS010000000
VERSION     DAXIFS010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.185"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            314..3079
                     /gene="tdfH"
                     /locus_tag="ACFOCA_001783"
     CDS             314..3079
                     /gene="tdfH"
                     /locus_tag="ACFOCA_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc piracy receptor TdfH"
                     /protein_id="HFC6988446.1"
                     /translation="MRSSFRLKPICFYLMGVMLYHHSYAEDAGRAGSEAQIQVLEDVH
                     VKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIR
                     GDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSA
                     GINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGAS
                     VGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQQYFVQTGGLKFNSNSGKWER
                     DLQRQFWKTSYYKQYKDPQKLKKYIEDQDKDWRENLAPQYDITPIDPSSLKQQSAGNL
                     FKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNSYTNLNLTAAYNSGRQ
                     KYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKN
                     RFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALK
                     KDIYRLNYSTNTVGYRFGGEYTGYYSSEGEFKRAFGENSPTYKKHCNPSCGLYEPVLK
                     KYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPER
                     ANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGDIPSWVSST
                     GLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNA
                     SKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYI
                     DGTNGGNTSNFRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRY
                     IDPLDAGNDAATQRYYSSFDPKDKDEDVTCNADGLCNGKYGGTSKSVLTNFARGRTFL
                     MTMSYKF"
     gene            3122..3364
                     /locus_tag="ACFOCA_001784"
     CDS             3122..3364
                     /locus_tag="ACFOCA_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988447.1"
                     /translation="MPSESPSDGICFPKRIILPQAYANPFYRIGNSKKNPFHSHAGKP
                     VFDFGYFWLFRVIYESSFPQKRESRHSMLRQFIEND"
BASE COUNT          968 a          840 c          812 g          770 t
ORIGIN      
        1 gcctgcgcgg gaatgacggc tgcagatgcc cgacggtctt tatagcggat taataaaaat
       61 caggacaagg cggcgagcca cagacagtac aaacagtacg gaaccgattc acttggtgct
      121 tcagcacctt agagaatcgt tctctttgag ctaaagcgag acaacgctgt actggttttt
      181 gttaatccac tataaatatc caattgaaat cttcagacgg tatatcaaat ttacactttt
      241 ttaatgttta tgccgcctga aaaaaatgct agtatatttc ctaattgtct gactgtttat
      301 tgttgaggaa aatatgagat cttctttccg gttgaagccg atttgttttt accttatggg
      361 tgttatgcta tatcatcata gttatgccga agatgcaggg cgcgcgggca gcgaggcgca
      421 gatacaggtt ttggaagatg tgcacgtcaa ggcgaagcgc gtaccgaaag acaaaaaagt
      481 gtttaccgat gcgcgtgccg tatcgacccg tcaggatata ttcaaatcca gcgaaaacct
      541 cgacaacatc gtacgcagca tccccggtgc gtttacacag caagataaaa gctcgggcat
      601 tgtgtctttg aatattcgcg gcgacagcgg gttcgggcgg gtcaatacga tggtggacgg
      661 catcacgcag accttttatt cgacttctac cgatgcgggc agggcaggcg gttcatctca
      721 attcggtgca tctgtcgaca gcaattttat tgccggactg gatgtcgtca aaggcagctt
      781 cagcggctcg gcaggcatca acagccttgc cggttcggcg aatctgcgga ctttaggcgt
      841 ggatgacgtc gttcagggca ataataccta cggcctgctg ctaaaaggtc tgaccggcac
      901 caattcaacc aaaggtaatg cgatggcggc gataggtgcg cgcaaatggc tggaaagcgg
      961 agcatctgtc ggtgtgcttt acgggcacag caggcgcagc gtggcgcaaa attaccgcgt
     1021 gggcggcggc gggcagcaca tcggaaattt tggcgcggaa tatctggaac ggcgcaagca
     1081 gcaatatttt gtacaaacag gcgggttgaa attcaattcc aacagcggaa aatgggaacg
     1141 cgatttgcaa aggcaattct ggaaaaccag ttactataaa caatacaaag acccccagaa
     1201 actgaaaaaa tacatcgaag accaagataa agactggcgg gaaaacctgg cgccgcaata
     1261 cgacatcacc cccatcgatc cgtccagcct gaagcagcag tcggcaggca atctgtttaa
     1321 attggaatac gacggcgtat tcaataaata cacggcgcaa tttcgcgatt taaacaccaa
     1381 aatcggcagc cgcaaaatca tcaaccgcaa ttatcaattc aattacggtt tgtctttgaa
     1441 ctcgtatacc aacctcaatc tgaccgcagc ctacaattcg ggcaggcaga aatatccgaa
     1501 agggtcgaag tttacaggct gggggctttt aaaggatttt gaaacctaca acaacgcaaa
     1561 aatcctcgac ctcaacaaca ccgccacctt ccggctgccc cgcgaaaccg agttgcaaac
     1621 cactttgggc ttcaattatt tccacaacga atacggcaaa aaccgctttc ctgaagaatt
     1681 ggggctgttt ttcgacggtc ctgatcagga caacgggctt tattcctatt tggggcggtt
     1741 taagggcgat aaagggctgc tgccccaaaa atcaaccatt gtccaaccgg ccggcagcca
     1801 atatttcaac acgttctact tcgatgccgc gctcaaaaaa gacatttacc gcttaaacta
     1861 cagcaccaat accgtcggct accgtttcgg cggcgaatat acgggctatt acagctcgga
     1921 aggcgaattt aagcgggcat tcggagaaaa ctcgccgaca tacaagaaac attgcaaccc
     1981 gagctgcggg ctttatgaac ccgtattgaa aaaatacggc aaaaagcgcg ccaacaacca
     2041 ttcggtcagc attagtgcgg acttcggcga ttatttcatg ccgttcgcca gctattcgcg
     2101 cacacaccgt atgcccaaca tccaagaaat gtatttttcc caaatcggcg actccggcgt
     2161 tcacaccgcc ttaaaaccag agcgcgcaaa cacttggcaa tttggcttca atacctataa
     2221 aaaaggattg ttaaaacaag atgatacatt aggattaaaa ctggtcggct accgcagccg
     2281 catcgacaac tacatccaca acgtttacgg gaaatggtgg gatttgaacg gggatattcc
     2341 gagctgggtc agcagcaccg ggcttgccta caccatccaa catcgcaatt tcaaagacaa
     2401 agtgcacaaa cacggttttg agttggagct gaattacgat tatgggcgtt ttttcaccaa
     2461 cctttcttac gcctatcaaa aaagcacgca accgaccaac ttcagcgatg cgagcgaatc
     2521 gcccaacaat gcgtccaaag aagaccaact caaacaaggt tatgggttga gcagggtttc
     2581 cgccctgccg cgagattacg gacgtttgga agtcggtacg cgctggttgg gcaacaaact
     2641 gactttgggc ggcgcgatgc gctatttcgg caagagcatc cgcgcgacgg ctgaagaacg
     2701 ctatatcgac ggcaccaacg ggggaaatac cagcaatttc cggcaactgg gcaagcgttc
     2761 catcaaacaa accgaaactc ttgcccgcca gcctttgatt tttgattttt acgccgctta
     2821 cgagccgaag aaaaacctta ttttccgcgc cgaagtcaaa aatctgttcg acaggcgtta
     2881 tatcgatccg ctcgatgcgg gcaatgatgc ggcaacgcag cgttattaca gctcgttcga
     2941 cccgaaagac aaggacgaag acgtaacgtg taatgctgat ggcttgtgca acggcaaata
     3001 cggcggcaca agcaaaagcg tattgaccaa ttttgcacgc ggacgcacct ttttgatgac
     3061 gatgagctac aagttttaaa ggcagcccgc gttttgtgga aaaccgcaaa aaaaagccaa
     3121 aatgccgtct gaaagccctt cagacggcat ttgtttcccc aaacgcatca tcctgccgca
     3181 agcctatgcc aatccgtttt atcgcatcgg caactcaaag aaaaatccat ttcattccca
     3241 cgcagggaag ccggtttttg atttcggtta tttttggttg tttcgggtaa tttatgagtc
     3301 gtcattcccg caaaagcggg aatctagaca ttcaatgcta aggcaattta tcgaaaatga
     3361 ctgaaactca aaaaactgga ttcccacttt
//
LOCUS       DAXIFS010000186         3378 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.186, whole genome shotgun sequence.
ACCESSION   DAXIFS010000186 DAXIFS010000000
VERSION     DAXIFS010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.186"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            65..816
                     /locus_tag="ACFOCA_001785"
                     /pseudo
     CDS             65..816
                     /locus_tag="ACFOCA_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284601.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
     gene            813..1373
                     /locus_tag="ACFOCA_001786"
     CDS             813..1373
                     /locus_tag="ACFOCA_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfQ family protein"
                     /protein_id="HFC6988448.1"
                     /translation="MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSV
                     ADAVDPRSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAA
                     GYQIQIDEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLT
                     DYSDAVIESLFNRLKPAHTAIRFTYR"
     gene            1384..3357
                     /locus_tag="ACFOCA_001787"
     CDS             1384..3357
                     /locus_tag="ACFOCA_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyocin knob domain-containing protein"
                     /protein_id="HFC6988449.1"
                     /translation="MHPIETPDKTFHDGDGVSELGTILPAWWLNQVQSELLAVLTAAG
                     IQPDKSQPNQLLAALNRLAVVTTGNQEIGGQKTFTAQTQFQSGIHLSANQTNWNGGHK
                     AYIGADADNAHIVFGDDTLRLHGANNRISYNNHDIFHKANKPRFAEDIEGKPNTLSGY
                     GIGNFKVETFRGDLNTLKTDGIYSLSTAVGSSNLPVENTACHIQVIAGTKHGWCRQLG
                     YPAYTSDVYERHQTSSANDNWSAWKKLNSDGIPVGAIVSFPKAVRNPAGYLKANGTTF
                     AQNTFPDLYRALGNSNRLPDLSRTDIGMTAWFPSDQIPTGWLAFDDIRTRVTETAYPE
                     LYRLLTGKYGSIQNVPQAEDRFIRNAGNSLAVGTKQEDEIKRHVHKVFSHWTNHTDTA
                     AVGYEDHNERQRSALVSTWTDGDLNDNGFLTPRPDSKMATGGDENRPKALVLKLCIKA
                     ADTLGEAVFWIKSHGETINAGALDAGTLAQNLQDKADRAHTHTAAQIQGLDEKISTAV
                     AAQFTRQTIGGVDIVRFPDGTMIQTGSYRFTRSGGPIENEVVFPVAFADGNVKCFVSE
                     RHSGRVTGDRRQHNWLFIRAKNHAAAIITNWYEGSCDWMAIGKAASGNAASSPIGPEI
                     PETNEEPQRESGRTSTGPRNRRRRDGLLEALQD"
BASE COUNT          824 a         1088 c          916 g          550 t
ORIGIN      
        1 cgtatgctac cgcatactgg cctttttctg ttagggaaag ttgcacttca aatgcgaatc
       61 cgccggcctg caagtgcgta tcggccagcg tttttaccgc actaccgccc gcgccgttat
      121 cggcagcggc ggcacggcgg aaataccggc aatcgccgac gagccgggcg cggccgccaa
      181 tgtggcgacg gcgaggcgca actgatggcc gcccccgtcg gtgtggccac cgaatgccgc
      241 cttaccgtac aaggcggcac cgaccgagaa agcgatgcct cactgctggc gcgtctgttg
      301 aaaatcatcc gccgaccgcc cgcaggcggc aaccgttacg actataaaaa ctgggcgttg
      361 agtgttgacg gcgtaaccag cgcatatgtt tatccgctgc gccgcggctt gggtacggtg
      421 gatattgcca ttacctccgc cgacggtgtg ccatcggaag aaactgtgcg ccgcgtacag
      481 gcttatatcg acgagatgcg cccggtaacg gcaaaaaatg cgctggtact caagccaacc
      541 gtaacggcgg tgcctgttac cgtgcaagtc aagctcgacg gcatcgactt ggacgaggcc
      601 aagcgccgca tacggacggc cctaaaagaa tatttcgaca ccctgatccc cggcgacggc
      661 ctgactgtgt cgcaaatcga ggcggctatc agcaatgtgg atggtgtgat cgaccgccgt
      721 ctgactgcgc cgacggccaa ccgtgccgcc gatacggtta accgcatcga gtggtttaaa
      781 gcgggcgcga ttaatgtaac ggagatgccg tcatgagcta tcaagacatc ttgcggggtc
      841 tgttgccccc cgtgtcgtat gcccgcaatg ccccgcgtgt gcgggcgcag gcagaaatag
      901 acggcgcagc gctggatgcg gtagcggaat cggctcaaag cgttgccgat gccgtcgacc
      961 cgcgcagcgc cggccaaatg ctggccgatt gggagcgcgt attaggtttg gacggtacgg
     1021 gcaaaaaccg ccagcgccgt gtgttggccg tcatggccaa gctaaacgaa acaggcggct
     1081 tgagtattcc ttattttgtg cgtttggccg aggcggcggg ctatcaaatc caaatcgacg
     1141 aaccgcagcc gttccgcgcc ggtgtcaacc gtgcgggcga ccgtcttgcg ccgcaggaaa
     1201 tcatgtgggt gtggcacgtt aacgtgcgcg gcggcaacaa ccgcattacc cgattccgcg
     1261 ccggtatctc ggcggcgggc gacaggctga ccgattacag cgatgccgtg atcgaaagcc
     1321 tgttcaaccg cctcaagccc gcccacaccg ctatccgatt tacctaccga taaggactaa
     1381 accatgcacc ccatcgaaac ccccgataag accttccacg acggcgacgg cgtgtccgaa
     1441 ttgggcacca tcctgcccgc gtggtggctc aaccaagtgc aatccgagct gctggccgtg
     1501 ctgactgcgg ccggtatcca gccggataag tcgcagccta atcaattact ggcagcactg
     1561 aatagactgg ctgtagttac caccggcaac caagaaatcg gcggccaaaa aacctttacc
     1621 gcccaaaccc aattccaaag cggcatccat ttatccgcca accagacgaa ctggaacggc
     1681 ggccacaaag cctacatcgg cgcggatgcc gacaacgccc acatcgtctt cggcgacgac
     1741 accctgcgcc tgcacggcgc aaacaaccgc atttcctaca acaaccacga catcttccac
     1801 aaagccaaca aaccgcgttt tgccgaagac atcgaaggca aaccgaacac actgtccgga
     1861 tacggcatcg gcaatttcaa agtcgaaacc ttccggggcg atttgaacac cctcaaaaca
     1921 gacggcatct attccctgtc gacggcggtc ggcagctcca acctgcccgt tgaaaacacc
     1981 gcctgccata tccaagtcat cgccggcacg aaacacggct ggtgcaggca gttgggttat
     2041 cccgcctaca cgtccgacgt gtacgaacgc caccaaacga gcagcgcaaa cgacaactgg
     2101 tccgcatgga aaaaactcaa ttcggacggc atccccgtcg gcgcgatcgt atcctttccc
     2161 aaagccgtcc gaaaccccgc aggctatctc aaagccaacg gcacgacctt tgcacaaaac
     2221 accttccccg acctctaccg cgccttgggc aacagcaacc gcctgcccga tttaagccgt
     2281 accgacatcg gcatgaccgc gtggtttccg tccgaccaaa tcccgaccgg ctggctggcg
     2341 tttgacgaca tccgcacgcg cgtaaccgaa accgcttatc ccgagctgta ccgtctgctg
     2401 accggaaaat acggcagcat ccaaaacgtc ccgcaggcgg aagaccgctt tatccgcaac
     2461 gcaggcaaca gcttggcagt cggaacgaag caggaagacg aaatcaaacg gcacgtccac
     2521 aaagtatttt cacactggac aaaccacaca gacacggcag ccgtcggtta cgaagaccac
     2581 aacgaaaggc agagaagcgc gctcgtatcg acttggacgg acggcgattt aaacgacaac
     2641 ggctttttaa ccccgcgccc ggacagcaaa atggcgacag gcggcgacga aaaccgcccc
     2701 aaagccctgg ttttaaaact gtgcatcaaa gccgccgaca ccttgggcga agccgtgttt
     2761 tggataaagt cccacggcga aaccatcaac gccggcgcgc tggacgcggg cacgctggcg
     2821 caaaacctcc aagacaaagc agaccgcgcc cacacccaca ccgccgccca aatccaaggg
     2881 ctggacgaaa aaatcagcac cgccgttgcc gcgcaattca cacgccaaac catcggcggc
     2941 gtggatattg tcagattccc cgacggcaca atgatacaga ccggcagcta caggttcaca
     3001 cgaagcggcg gccccatcga aaacgaagtc gtcttccccg tcgcctttgc cgacggcaac
     3061 gtcaaatgct tcgtatccga acgccattcg ggacgcgtta ccggcgatcg aaggcaacac
     3121 aactggctgt ttatccgcgc aaaaaaccac gccgccgcca ttattaccaa ctggtacgaa
     3181 ggcagttgcg actggatggc catcggcaaa gccgcctcgg gaaacgccgc cagctccccg
     3241 ataggccccg aaatacctga aaccaacgaa gaaccgcaaa gagagagtgg aagaacatca
     3301 accggacccc gaaaccgccg ccgccgagac ggcttgctcg aggcactgca agactagcgg
     3361 gctgtagaga tggctgta
//
LOCUS       DAXIFS010000187         3357 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.187, whole genome shotgun sequence.
ACCESSION   DAXIFS010000187 DAXIFS010000000
VERSION     DAXIFS010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3357
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.187"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(220..399)
                     /locus_tag="ACFOCA_001788"
     CDS             complement(220..399)
                     /locus_tag="ACFOCA_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988450.1"
                     /translation="MPSERTFCRSDGIFISFSCLPPFENPLRAALFETKQTPAANRTI
                     LIRSQSKSGGKLLNI"
     gene            complement(415..1422)
                     /locus_tag="ACFOCA_001789"
     CDS             complement(415..1422)
                     /locus_tag="ACFOCA_001789"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFC6988451.1"
                     /translation="MYPLARRILFALDAEKAHHFTLDALNMVYKLGLIPVTGNRTKPV
                     KLMGLDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPNPQPGNPQPRLFRVPE
                     YQGIINRMGFNNHGIDAMIQNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
                     AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVHGKYVPLAVKIAPD
                     LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
                     KLLADHIDGKLPIIGVGGIMEGRDAAEKIRLGATAVQVYSGLIYKGPALVKECLKALA
                     Q"
     gene            1654..1890
                     /gene="acpP"
                     /locus_tag="ACFOCA_001790"
     CDS             1654..1890
                     /gene="acpP"
                     /locus_tag="ACFOCA_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFC6988452.1"
                     /translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
                     MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
     gene            2046..3293
                     /gene="fabF"
                     /locus_tag="ACFOCA_001791"
     CDS             2046..3293
                     /gene="fabF"
                     /locus_tag="ACFOCA_001791"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFC6988453.1"
                     /translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLAGKSGIGAITRFDAS
                     DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
                     GVNIGSGIGGLPSIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
                     MVSACTTGAHAIGNSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
                     TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
                     EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
                     KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
                     VAISNSFGFGGTNGTLVFKRFKG"
BASE COUNT          815 a          928 c          856 g          758 t
ORIGIN      
        1 atcactcaaa taccattcat ccaattcact ttccggatcg gatatcaatc ggataaattc
       61 atttagttcg tccttaaaca tatcaaatcc ttaaatataa aatcttttga ttatccgccg
      121 tatccttatt ttccacatca tgaatttcaa cgccgttcat attttgcgtt ttctcaaacc
      181 gtccaccacg gcataaaatt attttttcat atcaattatt tatatgttta acaacttacc
      241 gccggacttg ctttggctgc gtatcaagat tgtccggttc gcggcgggcg tttgctttgt
      301 ttcaaacagg gcggcgcgta agggattttc aaagggcggc aggcaggaaa aggaaataaa
      361 aatgccgtct gaacggcaaa acgtgcgttc agacggcatt ttgtgcggga cgcgtcattg
      421 cgccaaagcc ttcaaacatt ctttgaccaa tgccggacct ttgtatatca atccgctgta
      481 cacctggacg gcagttgcgc ccaagcggat tttctctgcc gcgtccctgc cttccataat
      541 gccgcctacg ccgataatcg gcagcttgcc gtcgatgtgg tctgccaaca gcttcaacac
      601 ccgattactt ttttcatgaa cgggcagccc gctcaaaccg ccctgctcgc ctgcgagcgg
      661 atggctgccg agacttgatt tgtcgatggt ggtattggta gcgatgatgc cgtccatttc
      721 gacggatttg acaacgtggg cgatgtcttc gatttgtgct tcatccaaat cgggggcgat
      781 tttgacggcg agcgggacgt atttcccgtg tacagaggca agctgtgcct gtttgttttt
      841 caaagcctca agcaatgcgc tcaactcgtc gccaccttgc agcgcgcgga ggtttttagt
      901 gttgggcgag gaaatattga cggtaatgta acttgcgtgt gcgtaggctt tttcgaggca
      961 gattaaataa tcatcggcag cgttttcaat cggtgttaca gcgtttttgc cgatgttgat
     1021 gcccaatacg ccgctgaatt tacttttttc gatgttttga atcatggcat cgatgccgtg
     1081 gttgttgaag cccatgcggt tgatgatgcc ttgatattcg ggaacgcgga agaggcgcgg
     1141 ctgcgggttg ccgggctgcg ggttgggcgt taccgtgccg atttcgatga aaccgaagcc
     1201 gagcgcgccc aatgcgtcta tatattcgcc gtttttatcg agtccggcgg caagcccgac
     1261 agggttgggc aaatccaaac ccatcagttt tacaggtttg gtacggttgc cggttacggg
     1321 aatcagaccc aatttataaa ccatgttgag cgcgtcgagc gtgaagtggt gggctttctc
     1381 ggcatcgagt gcaaacagga tgcggcgggc aagtggatac atgacagggc tttctgcttc
     1441 agatggaaat gccgtcattt taaccgaaat cccgtcaaac atacggcaca caggtcaaac
     1501 ttgaacgaca aaacccgccg cacccaaaaa tgtacaaatc ggcaaatatt gatataatag
     1561 tcattagata gaaaactcta ttaaaagtcg gtacaatacc accgatttat ttcccttaaa
     1621 caacctgccg caaggcataa aggaacgact gatatgtcaa acatcgaaca acaagttaaa
     1681 aaaattgttg ctgaacaact gggcgtaaac gaagccgacg tgaaaaacga atcttctttc
     1741 caagacgact tgggcgcgga ttctttggac accgtggagc tggttatggc tttggaagaa
     1801 gcattcggct gcgaaatccc cgacgaagat gccgaaaaaa tcaccaccgt ccaactggct
     1861 atcgactaca tcaatgccca caacggctaa ccggtcgtcg cccgacacaa cagcctctgc
     1921 tgcaccgcgc aatagaggct tttcccttat atggcaaact gtttgaaccc ctgccgcaaa
     1981 ttacagacgg catctgcacg acagccgcat atgcccccat tccgacaacc aacagcgagg
     2041 ttatcatgag tcagagaaga gtagtcatta caggcttagg tcaggtttcc cctgtcggca
     2101 acactgtcgc agaggcttgg gacaccctgc tcgccggcaa aagcggcatc ggcgcgatta
     2161 cccgctttga cgcatccgac atcaacagcc gtgtcgccgg cgaagtgcgc ggtttcgaca
     2221 tcggacaata catcagcgcg aaagaagcgc gccggatgga cgtattcatc cactacggca
     2281 ttgccgccgc attgcaggca atcgccgatt cgggcttgga cgatgtggaa aacctcgaca
     2341 aagaccgcat cggcgtgaac atcggttccg gcatcggcgg actgcccagc atcgaggtca
     2401 ccggcaaagc cgtaatcgaa ggcggcgcgc gcaaaatcaa ccctttcttt atccccggtt
     2461 cgctgatcaa cctgatttcc ggacacgtta ccatcctcaa aggctaccgc ggcccgagct
     2521 acgggatggt ttccgcctgt accaccggcg cgcacgccat cggcaattcc gcccgactga
     2581 tcaaatacgg cgacgcggac ataatggttg ccggcggcgc ggaaggcgca atcagcactt
     2641 tgggcgtggg cggttttgcc gcgatgaaag ccctctccac ccgcaacgac gaccccgcca
     2701 ccgcttcccg tccgtgggac aaaggccgcg acggcttcgt tatcggcgaa ggcgcgggca
     2761 tattggtgtt ggaagaattg gaacacgcca aaaaacgcgg cgcgaaaatc tacgccgaaa
     2821 tcgtcggctt cggcatgagt tccgatgctt accatatcac cgcgccgaac gaagaaggcc
     2881 ccgcccttgc cgttacccgc gcgctgaaag atgccggcat caatcccgaa gacgtggatt
     2941 acgtcaacgc gcacggcacg tccaccccct tgggcgatgc caacgaaacc aaagccctca
     3001 aacgcgcgtt cggcgaacac gcctacaaaa ccgtcgtcag ctcgaccaaa tccatgaccg
     3061 gccacctgct cggcgcggcg ggcggcgtgg aggccgtgta cagcattttg gcgatacacg
     3121 acggcaaaat cccgccgacc atcaacattt ttgaacaaga cgttgaagcc ggctgcgatt
     3181 tggactactg cgccaacgaa gcgcgcgacg cggaaatcga cgttgccatt tccaactcct
     3241 tcggcttcgg cggcaccaac ggcacgctgg tcttcaaacg cttcaaaggc tgattccgca
     3301 aagccgccgc cgacatcgaa atgccgtctg aaaccgtttc agacggcatt tttatag
//
LOCUS       DAXIFS010000188         3346 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.188, whole genome shotgun sequence.
ACCESSION   DAXIFS010000188 DAXIFS010000000
VERSION     DAXIFS010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.188"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            63..692
                     /locus_tag="ACFOCA_001792"
     CDS             63..692
                     /locus_tag="ACFOCA_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HFC6988454.1"
                     /translation="MSETENQALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIK
                     FLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYE
                     TGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHL
                     NALGLSPEAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMPHRH"
     gene            867..3245
                     /gene="hmbR"
                     /locus_tag="ACFOCA_001793"
     CDS             867..3245
                     /gene="hmbR"
                     /locus_tag="ACFOCA_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent hemoglobin receptor HmbR"
                     /protein_id="HFC6988455.1"
                     /translation="MKPLQMLPIAALVGSIFGNPVFAADEAATETTPVKAEVKAVRVK
                     GQRNAPAAVERVNLNRIKQEMIRDNKDLVRYSTDVGLSDSGRHQKGFAVRGVEGNRVG
                     VSIDGVNLPDSEENSLYARYGNFNSSRLSIDPELVRNIDIVKGADSFNTGSGALGGGV
                     NYQTLQGRDLLLPERQFGVMMKNGYSTRNREWTNTLGFGVSNDRVDAALLYSQRRGHE
                     TESAGKRGYPVEGAGSGANIRGSARGIPDPSQHKYHSFLGKIAYQINDNHRIGASLNG
                     QQGHNYTVEESYNLLASYWREADDVNRRRNTNLFYEWTPESDRLSMVKADVDYQKTKV
                     SAVNYKGSFPIEDSSTLTRNYNQKDLDEIYNRSMDTRFKRITLRLDSHPLQLGGGRHR
                     LSFKTFASRRDFENLNRDDYYFSGRVVRTTSSIQHPVKTTNYGFSLSDQIQWNDVFSS
                     RAGIRYDHTKMTPQELNAECHACDKTPPAANTYKGWSGFVGLAAQLNQAWRVGYDITS
                     GYRVPNASEVYFTYNHGSGNWLPNPNLKAERSTTHTLSLQGRSEKGTLDANLYQSNYR
                     NFLSEEQKLTTSGDVSCTQMNYYYGMCSNPYSEKLEWQMQNIDKARIRGIELTGRLNV
                     DKVASFVPEGWKLFGSLGYAKSKLSGDNSLLSTQPLKVIAGIDYESPSEKWGVFSRLT
                     YLGAKKVKDAQYTVYENKGWGTPLQKKVKDYPWLNKSAYVFDMYGFYKPVKNLTLRAG
                     VYNVFNRKYTTWDSLRGLYSYSTTNSVDRDGKGLDRYRAPSRNYAVSLEWKF"
BASE COUNT          898 a          877 c          829 g          742 t
ORIGIN      
        1 tgcgggcaag tgcggatttt gcccgccccg catccttatc ccttaccgac aaaggaaaac
       61 ttatgagtga aaccgaaaat caagccctga cgtttgccaa acgtctgaag gcggatacca
      121 cggcggttca cgacagcgtg gataacctcg ttatgtctgt ccaaccgttt gtcagcaaag
      181 aaaactacat caaatttttg aaactccaat ccgttttcca caaggccgtc gaccacatct
      241 ataaagatgc cgaattaaac aaagccattc ccgagctgga atacatggcg cgatacgatg
      301 ccgtaacgca agacttgaaa gatttgggcg aagagcctta caaattcgac aaagaattgc
      361 catacgaaac tggcaacaaa gcaatcggct ggctttattg cgccgaagga tccaatttgg
      421 gcgcggcgtt tttgttcaaa cacgcccaaa aactcgatta caacggcgaa cacggcgcgc
      481 gccacctcgc tccgcatccc gacgggcgcg gcaaacactg gcgcgccttc gtcgagcatc
      541 tgaacgcatt gggcttaagc cccgaagccg aagccgaagc catccaaggc gcgcgcgaag
      601 cctttgcatt ctacaaagtc gtgttgcgcg aaaccttcgg cttggcagcc gatgccgaag
      661 cccccgaagg tatgatgccg cacaggcact aaaaaataat cgaaccaaat aaacaaggtc
      721 tcggcatagc tgtttgcagg gacctttaat tacacggcgc ggctttgttt acatggatta
      781 ctgtcttatt aaatattaat gattatcata aaatctatta ttcgctaacc gatggatgaa
      841 caatccatac atcttgagtt gataatatga aaccattaca aatgctccct atcgccgcgc
      901 tggtcggcag tattttcggc aatccggtct ttgcggcaga tgaagctgca actgaaacca
      961 cacccgttaa ggcagaggta aaagcagtgc gcgttaaagg ccagcgcaat gcgcctgcgg
     1021 ctgtggaacg cgtcaacctt aaccgtatca aacaagaaat gatacgcgac aacaaagact
     1081 tggtgcgcta ttccaccgat gtcggcttga gcgacagcgg ccgccatcaa aaaggctttg
     1141 ctgttcgcgg cgtggaaggc aaccgtgtcg gcgtgagcat agacggcgta aacctgcctg
     1201 attccgaaga aaactcgctg tacgcccgtt atggcaactt caacagctcg cgtctgtcta
     1261 tcgaccccga actcgtgcgc aacatcgaca tcgtaaaagg ggcggactct ttcaataccg
     1321 gcagcggcgc cttgggcggc ggtgtgaatt accaaaccct gcaaggacgt gacttactgt
     1381 tgcctgaacg gcagttcggc gtgatgatga aaaacggtta cagcacgcgt aaccgtgaat
     1441 ggacaaatac cctcggtttc ggcgtgagca acgaccgcgt ggatgccgct ttgctgtatt
     1501 cgcaacggcg cggccatgaa actgaaagcg caggcaagcg tggttatccg gtagagggtg
     1561 ctggtagcgg agcgaatatc cgtggttctg cgcgcggtat tcctgatccg tcccaacaca
     1621 aataccacag cttcttgggt aagattgctt atcaaatcaa cgacaaccac cgcatcggcg
     1681 catcgctcaa cggtcagcag gggcataatt acacggttga agagtcttac aacctgcttg
     1741 cttcttattg gcgtgaagct gacgatgtca acagacggcg taacaccaac ctcttttacg
     1801 aatggacgcc ggaatccgac cggttgtcta tggtaaaagc ggatgtcgat tatcaaaaaa
     1861 ccaaagtatc tgcggtcaac tacaaaggtt cgttcccgat agaggattct tccaccttga
     1921 cacgtaacta caatcaaaag gacttggatg aaatctacaa ccgcagtatg gatacccgct
     1981 tcaaacgcat taccctgcgt ttggacagcc atccgttgca actcgggggg gggcgacacc
     2041 gcctgtcgtt taaaactttc gccagccgcc gtgattttga aaacctaaac cgcgacgatt
     2101 attacttcag cggccgtgtt gttcgaacca ccagcagtat ccagcatccg gtgaaaacca
     2161 ccaactacgg tttctcactg tctgaccaaa ttcaatggaa cgacgtgttc agtagccgcg
     2221 caggtatccg ttacgatcat accaaaatga cgcctcagga attgaatgcc gagtgtcatg
     2281 cttgtgacaa aacaccgcct gcagccaaca cttataaagg ctggagcggt tttgtcggct
     2341 tggcggcgca actgaatcag gcttggcgtg tcggttacga cattacttcc ggctaccgtg
     2401 tccccaatgc gtccgaagtg tatttcactt acaaccacgg ttcgggtaat tggctgccca
     2461 atcccaacct gaaagccgag cgcagcacca cccacaccct ctctctgcaa ggccgcagcg
     2521 aaaaaggtac tttggatgcc aacctgtatc aaagcaatta ccgcaatttc ctgtctgaag
     2581 agcagaagct gaccaccagc ggcgatgtca gctgtactca gatgaattac tactacggta
     2641 tgtgtagcaa tccttattcc gaaaaactgg aatggcagat gcaaaatatc gacaaggcca
     2701 gaatccgcgg tatcgagctg acgggccgtc tgaatgtgga caaagtagcg tcttttgttc
     2761 ctgagggctg gaaactgttc ggctcgctgg gttatgcgaa aagcaaactg tcgggcgaca
     2821 acagcctgct gtccacccag ccgttgaaag tgattgccgg tatcgactat gaaagtccga
     2881 gcgaaaaatg gggcgtgttc tcccgcctga cctatctggg cgcgaaaaag gtcaaagacg
     2941 cgcaatacac cgtttatgaa aacaagggct ggggtacgcc tttgcagaaa aaggtaaaag
     3001 attacccgtg gctgaacaag tcggcttatg tgttcgatat gtacggcttc tacaaaccgg
     3061 tgaaaaacct gactttgcgt gcaggcgtat ataatgtgtt caaccgcaaa tacaccactt
     3121 gggattccct gcgcggcctg tatagctaca gcaccaccaa ctcggtcgac cgcgatggca
     3181 aaggcttaga ccgctaccgc gccccaagcc gtaattacgc cgtatcgctg gaatggaagt
     3241 tttaatctgg tattattgaa ttaatcgcct tgttgaaaat taaagccgtc cgaattgtgt
     3301 tcaagaactc attcggacgg ttttttaccg taaatctgtg tgatgg
//
LOCUS       DAXIFS010000189         3343 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.189, whole genome shotgun sequence.
ACCESSION   DAXIFS010000189 DAXIFS010000000
VERSION     DAXIFS010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.189"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(154..324)
                     /locus_tag="ACFOCA_001794"
     CDS             complement(154..324)
                     /locus_tag="ACFOCA_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988456.1"
                     /translation="MLLYRLLGGAEIECGRCPVPPMTDWQHFLPAMGTVSAWVAVIWA
                     YLIIESEKNGRY"
     gene            481..2631
                     /gene="dinG"
                     /locus_tag="ACFOCA_001795"
     CDS             481..2631
                     /gene="dinG"
                     /locus_tag="ACFOCA_001795"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HFC6988457.1"
                     /translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
                     LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
                     QLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYKLYQLTQNNAQQNLLGFEAPEVLWD
                     SKPKPEELKLLHDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRP
                     ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
                     RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
                     EPSLSLGPSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAVAVRSLLKHVIGLNDALS
                     AARREKEQDGALLDRLTGDFGIFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
                     KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
                     LALKSPFDFEKQGELYIPPIYASPKDPEAHTAAIIEWLPKLISPGEAIGTLVLFSSRK
                     QMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPG
                     TACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRT
                     EQDYGRVTILDNRVKTQRYGQQLLAGLPPFKRIG"
     gene            2667..3281
                     /locus_tag="ACFOCA_001796"
     CDS             2667..3281
                     /locus_tag="ACFOCA_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HFC6988458.1"
                     /translation="MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGAPVAGAASMLLN
                     GKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRT
                     MIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIGDIATAVGNDEALAA
                     EAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF"
BASE COUNT          839 a         1101 c          817 g          586 t
ORIGIN      
        1 cgaacaatac ctgaatcgtc aaaaaacccg ttaccttcga gaccaccgcg gccgtcccgc
       61 acatcctgtc gccggtattc cctaagcggt acggcaacct aaaacaaatg ccgtctgaac
      121 ttccgtttca gacggcattt ttatacggac tactcaatat cttccgtttt tttcactttc
      181 aataatcaga tatgcccaaa tcaccgccac ccaagccgac accgttccca tcgccggcaa
      241 aaaatgctgc caatccgtca tcggcggcac agggcaacgg ccgcattcga tttccgcgcc
      301 gcccaacaac cggtacagca acatatccgc aatccaaagc aacaacgggt atttcaaacg
      361 ctgcaaccaa aaaaccaacc acgtccgcac gattcacctc accccccatt ccgacaacga
      421 tattgtaccg cttccgtgca atgttaaaat aagcccactt ctaccgccgt acaaaacgcc
      481 atgctcaccg atttagaaaa aaacgccatc cgcgaccatt accaaaacat cggcaaaaac
      541 ctgcccggtt tccgtccgcg cgcttcgcag cgggaaatga ttgcggcggt tgccaacgct
      601 ttttcgcgga cgttggcgcg cgaagaaggc ggcgagccgc ccaagcgcga gggcgagagc
      661 atcgccgtaa tcgaagggcc gaccggcgtg ggcaaatcgc ttgcctacct gctggcgggc
      721 ggcatcatgg cgcagacgcg cggcaagcgg ctgattgtga gcagcgcaac ggttgcctta
      781 caggagcagt tggttgaccg cgacctgccg tttctggtcg aaaaaagcgg tttggaactg
      841 accttcgcgc ttgccaaagg gcgcggccgc tatctctgcc cttacaaact ctaccaactg
      901 acgcaaaaca acgcccagca aaacctgctt ggttttgaag caccggaagt attgtgggac
      961 agcaaaccca agcccgaaga attgaagctg ctgcacgaca ttgccgacga attttccgcc
     1021 cgacggttca acggcgaccg cgacacttgg ccggaaaaaa tcgatgacgc gatttggctc
     1081 aaagttacca acgaccgcca cggctgcctg aaaaccgcct gtcccaaccg tccggaatgt
     1141 ccgttttacc tggcacgcga tgtcttggaa accgtcgatg tcgtcgttgc caaccacgac
     1201 cttctgcttg ccgacatcag tatgggcggc ggcgtgattc tgcccgcgcc cgaaaacagt
     1261 ttctattgca tagacgaagc gcaccacctg cccaaaaaag ccctcagccg ttttgccgcc
     1321 gaacattcgt ggaatattgc cgtttggacg ctggaaaaac tgccgcagct gaccggcaag
     1381 attgccgcgc ttaccgataa agccgaactt gccaaccttg ccgatgaagc cgccgcatcc
     1441 ttgctcgaca gcctgcacga atggcagttc catttggcgg aagagccgtc tttgagcttg
     1501 gggccgtctg aaaacgacag gcgaaccaac agcgaaccga cttggctgtg ggaagacggc
     1561 aaaatccccg aaggcctcga aaccaccgtt tccaacaccg ccgttgctgt gcgcagcctg
     1621 ctcaaacacg ttatcgggct gaacgatgcg ctttctgccg cacgccgcga aaaagaacag
     1681 gacggcgcgc tcctcgaccg cctgaccggc gatttcggca tcttcatcgc ccgtatcgaa
     1741 caaatcagcg cggtttggga tttgctctcc accgtccccc tcgaaggcga agagccgctg
     1801 gcaaaatgga taacccgccg cgccgacgac aaaaacgact acattttcaa cgccagcccc
     1861 atcagcagcg cgtcccacct cgccaacagc ctgtggcggc gcgcggcagg cgcggtattg
     1921 acctccgcca ccctgcaatc cttgggcaac tttaacctga tgctgcgcca aaccgggctg
     1981 caatggctgc ccgagaccac caccctcgcc ctcaaaagcc cctttgactt tgaaaaacag
     2041 ggcgaactct acatcccccc catatacgcc agccccaaag accccgaagc ccacaccgcc
     2101 gccatcatcg agtggctgcc caagctcatt tcgcccggcg aagccatcgg cacgctcgtc
     2161 ttgttttcct cgcgcaaaca aatgcaggat gtcgccctgc gcctgcccgg agactacctg
     2221 ccgctcttgc tcgtacaagg cgaattaccc aaagccgttc tcctgcaaaa acaccaccgg
     2281 gccatagaag aaggcaaagc cagcatcatc ttcggactcg acagctttgc cgaaggactc
     2341 gacctgcccg gcaccgcctg cgtgcaagtc atcatcgcca aacttccctt cgccatgccc
     2401 gacaacccca tcgaaaaaac ccaaaaccgc tggatagaac agcgcggcgg caaccctttc
     2461 atcgaaatca ccgtccccga agccggcatc aaactcatcc aggccgtcgg ccgcctcatc
     2521 cgcaccgaac aagactacgg ccgcgtaacc atcctcgaca accgcgtcaa aacacagcgg
     2581 tacggccaac aattattagc cggcctgcca ccgtttaaaa ggatagggta aacctaccgc
     2641 cctgcccgca acagaaagga aaaatcatga acttcacccg actgctcaac caagtcttaa
     2701 gcacggttca aaaaaaaggc aacaccttct ccgacagccc gctcaattca ttcggcggag
     2761 gcgcgccggt tgccggtgcc gcgtccatgc tgctgaacgg taaaaaccgc aaaaccatta
     2821 ccaaaatcgg ttcgaccgcc gctttgggct acctcgccta ccggggctat cagatgtggc
     2881 agcaaaacaa agggcgggca accgtaacac aaagcgattt ccaacctgcc ggagaaactg
     2941 aagaaacata cagccgcacc gtattgcgca ccatgatagc cgccgccgct tcagacggca
     3001 tgatagacga agccgaacgc cggactatcg aacaggaaag cggcacagac cccgaaactg
     3061 ccgcatggct cgccgccgaa taccgcctgc ccgcaagcat cggggacatc gccaccgccg
     3121 tcggcaacga tgaggcgttg gcggcggagg cctatctggc ggcaaggttg gtctgtgccg
     3181 atttgtcgcg gaaagaaacc gtcttcctcg cccgcctgtc gcaggctttg aaactggatg
     3241 acaatctggt ggagagtttg gaaaggcaat tggggttttg atgacacagc cagggaggga
     3301 aaatcatcaa aaaacggtta ttccgacccc ggcctcaaaa cgg
//
LOCUS       DAXIFS010000190         3308 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.190, whole genome shotgun sequence.
ACCESSION   DAXIFS010000190 DAXIFS010000000
VERSION     DAXIFS010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3308
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.190"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            120..452
                     /gene="trxA"
                     /locus_tag="ACFOCA_001797"
     CDS             120..452
                     /gene="trxA"
                     /locus_tag="ACFOCA_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HFC6988459.1"
                     /translation="MSSELIVHTSDAAFEKDVLNADIPVLLDFWAPWCGPCKMIAPIL
                     DDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLT
                     AFVEASIA"
     gene            complement(505..1452)
                     /locus_tag="ACFOCA_001798"
     CDS             complement(505..1452)
                     /locus_tag="ACFOCA_001798"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6988460.1"
                     /translation="MTDITPFANRLGKNIKHLMKWAKRNGIEAWRIYDRDIPQFPFAA
                     DVYGDRIHLQEYDTGWLMRPEEYEAWLAEVLEAVAFVTGFEPEQIRLKRRERQKGLQQ
                     YEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSY
                     TGSFTVYAATGGAASSETVDLSNTYLDWARRNFELNGIDTERHKIVRADVFQYLQTAY
                     GEGRRFDLIVMDPPSFSNSKKMSDILDIQRDHKKLIDGAVKLLASDGILYFSNNLRSF
                     VLDDLVSEQYAVKDISKQSVPEDFRNKKIHRCWEIRHKS"
     gene            1780..3168
                     /locus_tag="ACFOCA_001799"
     CDS             1780..3168
                     /locus_tag="ACFOCA_001799"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6988461.1"
                     /translation="MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIM
                     ASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNM
                     RWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEAD
                     RMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQG
                     KIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL
                     HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRI
                     GRTGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKG
                     KGGWGDRKSGGRCGDHKPGKEGFGGKTRGEGFKKEGFKKDGFKKTGEGFKGKRKAGDS
                     FAGRGERRYKDR"
BASE COUNT          818 a          896 c          855 g          739 t
ORIGIN      
        1 ttgcaaaggc gattggggcg gtacagaaaa actattatcc cgcccgccca cttgaaattt
       61 ttatgcccaa gccctatcct gcacgctatc gtgccaatcc caaccgaaaa ggaaaaataa
      121 tgagcagcga attgattgta cacaccagcg atgccgcttt tgaaaaagac gttttaaatg
      181 cagatatccc cgtcctgctg gacttttggg ctccgtggtg cggcccctgc aaaatgattg
      241 ccccgatttt ggacgacatt gccgccgaat ttgaaggccg tctgaaagtg gtcaaaatca
      301 acatcgacga caacgaagcc accccgtccc gtttcggcgt gcgcggcatt ccgaccctga
      361 tggtgttcaa aaacggcgaa gtcgtcgcca ccaaagtcgg cgcattggca aaaggtcagc
      421 tgaccgcctt tgtcgaagcc tctatcgcct gataaagcgc aatcgaaaaa gccgccggaa
      481 gattccggcg gctttttcgc acccttaaga tttgtggcgg atttcccagc acctatggat
      541 ttttttgttg cggaaatctt cgggaacgga ttgtttggaa atgtctttga cggcgtattg
      601 ttccgatacc aagtcgtcta agacgaagct gcgcaggttg ttggaaaagt acaaaatgcc
      661 gtctgaagcg agcagcttca ccgcgccgtc aatcagcttt ttgtggtcgc gctggatgtc
      721 gaggatgtcg gacattttct tgctgttgga aaaactgggc gggtccatca caatgaggtc
      781 gaaccgcctg ccttccccat atgccgtctg aagatattgg aacacgtcgg cgcggacgat
      841 tttatgccgt tccgtatcga tgccgttcaa ttcaaaattg cgtctcgccc aatcgagata
      901 agtgttagac aaatcgacag tttcgctgga tgccgcgccg ccggtggcgg catagacagt
      961 gaagctgccg gtgtaggaaa acaggtttaa aaaacgtttg cccgccgccg tttcgccgac
     1021 ttttttgcgc gtgtttcgat gatccaaaaa aagccccgta tccaaatact tatcaaggtt
     1081 gacccaaaac ttgcggccgt tttcggtgat gacgaaatcg tcgcccgcct tgccggtttt
     1141 ttcgtattgc tgcaaacctt tttggcgttc gcggcgtttg aggcggattt gttcgggttc
     1201 aaaaccggta acgaaagcga cggcttccaa gacttcggca agccacgctt cgtattcttc
     1261 gggccgcatc agccagccgg tatcgtattc ctgaaggtgg attcgatcgc cgtaaacatc
     1321 ggcggcaaag gggaattggg ggatgtcgcg gtcgtaaatg cgccaggctt caatgccgtt
     1381 gcgtttcgcc catttcataa ggtgtttgat gtttttgccc aagcggttgg caaacggtgt
     1441 gatgtcggtc attggtttca ggcggaataa agtggaaaac ggcaatttta ctgtaattaa
     1501 cgcccgattg cttgaccgtt tcgggcaaac cctataccat ccgccgctta tcttgtcata
     1561 cgaagccatc gccttccaac ctaaaccgcc cttacgggcg cgtttctttt gttgctttga
     1621 ttttgcaaag cctttctgtg caggttgtcg tcgatgtaaa ccacaagcaa gccgcttgcg
     1681 acaaccctgt aacttcacat tccccgtatc gttacccttc cctgcttcag gccgtctgaa
     1741 cctttcggac gcgggcgttg ttgtcttcca aggatagcca tgtctattaa atttgccgat
     1801 ttgaaccttg ataaaaacat tttgtccgcc gtcagcagcg agggttacga aagcccgacg
     1861 ccgattcagg cgcaggcgat tccgtttgct ttggaaggcc gcgacatcat ggcttcggcg
     1921 caaaccggct ccggcaaaac cgccgccttt ctgttaccga ctttgcagcg actgaccaaa
     1981 cgcagcgaaa aaccgggcaa aggcccgcgt gctttggtgt tgaccccgac ccgcgaattg
     2041 gcggcacaag tggaaaaaaa cgcgctggcg tatgccaaaa atatgcgctg gttccgtacc
     2101 gtcagcatcg tcggcggcgc atcgttcggc taccaaaccc gcgccctgag caaaccggtc
     2161 gatctgattg tcgccacgcc gggccgcctg atggacctga tgcaaagcgg caaagttgat
     2221 tttgaacgtt tggaagtgct gattttggac gaagccgacc gtatgttgga tatgggcttt
     2281 atcgacgaca tcgaaaccat cgtcgaagcc accccgaccg accgtcagac tttattgttc
     2341 tccgccactt gggacggcgc ggtcggcaaa ctggcacgca aactgaccaa agaccctgaa
     2401 atcatcgaag tcgaacgcgt ggacgaccaa ggcaaaatcg aagaacaact gctgtactgc
     2461 gacgatatgc gtcacaaaaa ccgcctgctc gaccacatcc tgcgcgatgc caatatcgat
     2521 caatgcgtga ttttcacgtc caccaaagcg atgaccgaag tcatcgcgga tgaattgtac
     2581 gaaaaaggtt tcgccgccaa ctgcctgcac ggcgacatgc cgcagggctg gcgcaaccgc
     2641 acgctgatgg atttacgcaa aggccgctgc aaaattttgg ttgccaccga cgttgccgca
     2701 cgcggtatcg acgtaccgac cattacccac gtcatcaact acgacctgcc gaaacaggcg
     2761 gaagactacg tccaccgcat cgggcgcacc ggccgcgcag gccgcacggg tattgcgatt
     2821 acgtttgccg aagtgaacga atacgtcaaa gtccacaaaa tcgaaaaata cattaaccgc
     2881 aaactgcccg aactgaccat cgaaggcatg gaaccgaccc gcaaacgcaa atccgcaggc
     2941 ggtaagccaa aaggcaaagg cggctggggc gataggaaat ccggcggccg gtgcggcgat
     3001 cataaaccgg gcaaagaagg cttcggcggc aaaacgcgcg gcgaaggttt caagaaagaa
     3061 ggctttaaga aagacggttt caaaaaaacc ggcgaaggct tcaaaggcaa acgtaaagcc
     3121 ggcgattctt ttgcaggcag aggcgaacgc cgttacaaag accgctaagc cccaacctgc
     3181 ctcataaacc aatgccgtct gaaaccgatt tcgagtttca gacggcattt ttgcaatgtt
     3241 tcaacaccgc ccggctttga tacccaaagg attaatctgc aatatagtgg attaacaaaa
     3301 accagtac
//
LOCUS       DAXIFS010000191         3278 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.191, whole genome shotgun sequence.
ACCESSION   DAXIFS010000191 DAXIFS010000000
VERSION     DAXIFS010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.191"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(229..366)
                     /locus_tag="ACFOCA_001800"
     CDS             complement(229..366)
                     /locus_tag="ACFOCA_001800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988462.1"
                     /translation="MPSETSFDRFRRHFPIPPPPFQWAFFIKRKISRHSHAGGNLERK
                     I"
     gene            complement(442..1956)
                     /gene="katA"
                     /locus_tag="ACFOCA_001801"
     CDS             complement(442..1956)
                     /gene="katA"
                     /locus_tag="ACFOCA_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase KatA"
                     /protein_id="HFC6988463.1"
                     /translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
                     LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
                     ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
                     RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
                     HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
                     PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKM
                     LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
                     GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
                     MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL"
     gene            2304..3155
                     /locus_tag="ACFOCA_001802"
     CDS             2304..3155
                     /locus_tag="ACFOCA_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HFC6988464.1"
                     /translation="MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNP
                     LLERKDTDEFSDARFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSD
                     QEAACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLQHALTALKKFDPAGVAA
                     ADLNESLILQIERSGECAAKPAALHIVRNALDSIDGNRSQTLARIKKHLPQTDSGTLE
                     AALDLIASLNPFPAAGFASSTPTPYSDEALANLLAFRGMEVSRRTIAKYRESLEIPAA
                     HKRKTAE"
BASE COUNT          711 a          854 c          920 g          793 t
ORIGIN      
        1 gccgctttca gacggcatcg gtttgccggt accggtaaga ttggcggatt ggtggggttg
       61 gtgggattgg tggagttggt gggctgaagc ccaccctacg cccaccttac agcccattct
      121 acagtccgat acggcttact gaatcgtcag aaatacctaa accgtcattc ccgcgcaggc
      181 gggaatccag gtctgtcggt gcggaaactt atggggaaaa aggtttcttt agattttacg
      241 ttctagattc ccgcctgcgt gggaatgacg ggatattttg cgtttaataa aaaacgccca
      301 ctgaaacggc gggggcggga tggggaaatg ccgtctgaag cggtcaaacg acgtttcaga
      361 cggcattttt atgcccggtt atttccggta gcggacggcg cgggacagga tttcttcaat
      421 ttccatccac ataatgcccc cttacagcaa accgggctgg ccgagtgcgg ggtcggtcgc
      481 gcgggcggct tgtgcgtctt cgacagtcag tccgagggct tttgccacgc cttcgccgta
      541 tgccggatcg caacggtagc agttgcggat atggcggtat ttgatgaagt cgggcgcgtc
      601 gcccattgcg gcggcggtgt tgccgaacaa tgcctgtttc tgcgcgtcgt tcatcaggtt
      661 gaacagggcg cgcggttggc tgaaatagtc gtcatcgtct tggcggtagt cccagtgcgc
      721 cgcgtcgccg ttgattttca aaggcggttc ggcgaagtcg ggttgttgct gccattggcc
      781 gaagctattg ggttcgtagt gcggcaggct gccgtagttg ccgtcggcgc gtccttgtcc
      841 gtcgcgctgg ttgctgtgaa cagggcaacg cggacggttg acagggattt ggcggaagtt
      901 cacgcccaag cggtagcgtt gcgcgtcggc gtaattgaac aaacgggctt gcaacatttt
      961 atctgggctc gcgccgatac cgggaacgag gttgctcggt gcgaaggcgg attgttccac
     1021 atcggcgaag aagttttcgg gattgcggtt caactcgaat tcgcccactt caatcagcgg
     1081 atagtctttt ttcggccaaa ctttggtcaa gtcaaacgga tgataaggta ctttttccgc
     1141 gtctgcttca ggcatgactt ggatgtacat cgtccatttc ggaaactcgc cgcgttcgat
     1201 ggcttcgtat aagtcgcgct gatggctttc gcggtcgtcg gcgatgattt tggcggcttc
     1261 ttcgttggtc aggtttttaa tgccttgttg ggtgcggaaa tggaatttca cccaaaaacg
     1321 ctcgcctgct tcgttccaga agctgtaggt atgcgaaccg aagccgtgca tatggcggta
     1381 gccggcgggg atgccgcggt cgctcatcac gatggtaact tggtgcagtg cttcgggcag
     1441 cagcgtccag aagtcccagt tgtttgtggc agagcgcata ttggtgcgcg ggtcgcgttt
     1501 gacggctttg ttcaggtcgg ggaacttacg cgggtcgcgc aggaagaaca cgggcgtgtt
     1561 gttgccgacc acatcccagt tgccttcttc ggtatagaac ttcaaggcaa agccgcggat
     1621 gtcgcgttcc gcatcggctg cgccgcgttc gcctgccacg gtggtgaaac gggcgaacat
     1681 ctcggttttt ttgccgactt cgctgaagat tttggcgcgg gtgtatttgg tgatgtcgtg
     1741 cgttacggta aacgtaccga acgcgcccga acctttggcg tgcatacggc gttcggggat
     1801 gacttcgcgc acgaagtcgg cgagtttttc attcagccac aaatcctgcg ccagcagagg
     1861 gccgcgagga ccggcggtca ggctgttttg attgtcggca acaggcgcgc cgttgttcat
     1921 ggtcagatgg gttacggggc atttggaggt agtcatcgct cttgttcctt ttctcaggtt
     1981 ggtcaaatgg gggtaaacgg cttacagtac gatttggcgg aaagcgtatt cgtaaccggt
     2041 ttcttgattg caataaattt cttgaatcga cattttgttt cccttttgta aaaactatgg
     2101 atgcgactat acgccaagat tttcgctatt aaaactatga aatcgattta atattattat
     2161 aagcaatcgg ttcttgattt tcgtttgttt tttgttatcg aacggaatcc gaacccgctc
     2221 attaaaacca tttataatgc aatgacgctt tgcggcattt tttgcgccga caggctgaaa
     2281 ataacaattt tccccacatt atcatgacct tactcggaat aaagctcaaa cagacccagc
     2341 agctcaacca gcggctgcaa caatctttgc gcgtattgca gatgtcgggt atcgaacttg
     2401 aacgcgaggt cgaaaactgg ctgtcggaca accccctgct cgaacgcaaa gacacggatg
     2461 aattttccga tgctaggttt tcccattaca ccgcgcctgc ccgtcaaatc ggcggagacg
     2521 aaggcgaaga tatgctgtcc aacatcgccg gtgagcagga tttcaagcaa tacctgcacg
     2581 cgcaagtatg cgaacacccg ctttccgacc aagaagccgc ctgtgtccac atccttatcg
     2641 atttccttga cgagcagggt tatctgaccg acagcatcga agacatcctc gaccatacgc
     2701 ccttagagtg gatgttggat gaagcaatgc tgcaacacgc gctgaccgca ttgaaaaaat
     2761 tcgacccggc aggcgtggcc gccgccgatt tgaacgaatc gctgatactg cagatagaaa
     2821 gatcgggcga atgtgctgcc aaacccgccg ccctgcatat cgtccgaaac gccctcgaca
     2881 gcattgacgg caaccgcagc caaaccctcg cacgaataaa aaaacacctg ccccaaaccg
     2941 acagcggcac actcgaagcc gcactcgacc tcattgcttc gctcaatccc tttcccgccg
     3001 ccggttttgc ctcgtccaca cccacgccgt attctgacga ggcactcgcc aacctgctgg
     3061 ctttccgcgg catggaggtt tctcgccgca ccattgccaa atacagagaa tcccttgaga
     3121 ttccggcagc acacaaacgc aaaaccgcag aataattgct gaataatctt ataaagacaa
     3181 caaaccaaaa gccggcattt ctgcgaaagc gggaatgccg aatccgtccg cgcggaaacc
     3241 tgcatcccgt cattcccgcg aaagagggaa tctagaaa
//
LOCUS       DAXIFS010000192         3153 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.192, whole genome shotgun sequence.
ACCESSION   DAXIFS010000192 DAXIFS010000000
VERSION     DAXIFS010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3153
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.192"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            108..323
                     /gene="rpmE"
                     /locus_tag="ACFOCA_001803"
     CDS             108..323
                     /gene="rpmE"
                     /locus_tag="ACFOCA_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFC6988465.1"
                     /translation="MKQGIHPNYHEVNVTCSCGNKFATKSAMEKENFNIEVCSLCHPF
                     YTGTQKIVDTTGRVDKFNNKFGNLFKR"
     gene            638..1267
                     /locus_tag="ACFOCA_001804"
     CDS             638..1267
                     /locus_tag="ACFOCA_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="HFC6988466.1"
                     /translation="MIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQF
                     LGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPIFLGIKVLLLGDSDGEAIAKEGLRK
                     DNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKL
                     AQVPSVGETLEKYSRWFVAVVYLGLGVYILIENNSFDMLWTVSGQEKIL"
     gene            1423..3084
                     /locus_tag="ACFOCA_001805"
     CDS             1423..3084
                     /locus_tag="ACFOCA_001805"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArnT family glycosyltransferase"
                     /protein_id="HFC6988467.1"
                     /translation="MLTYTPPDARPPAKTHEKPWLLLLMAFAWLWPGVFSHDLWNPAE
                     PAVYTAVEALAGSPTPLVAHLFGQTDFGIPPVYLWVAAAFKHLLSPWAADSYDAARFA
                     GVFFAVVGLTSCGFAGFNFLGRHHGRSVVLILIGCIGLIPTVHFLNPAAAAFAAAGLV
                     LHGYSLARRRVIAASFLLGTGWTLMSLAAAYPAAFALMLPLPVLMFFRPWQSRRLMLT
                     AVASLAFALPLMTVYPLLLAKTQPALFAQWLDDHVFGTFGGVRHVQTAFSLFYYLKNL
                     LWFALPALPLAVWTVCRTRLFSTDWGILGVVWMLAVLVLLAVNPQRFQDNLVWLLPPL
                     ALFGAAQLDSLRRGAAAFVNWFGIMAFGLFAVFLWTGFFAMNYGWPAKLAERAAYFSP
                     YYVPDIDPIPMAVAVLFTPLWLWAITRKNIRGRQAVTNWAAGVTLTWALLMTLFLPWL
                     DAAKSHAPVVRSMEASLSPELKRELSDGIECIDIGGGDLHTRIVWTQYGTLPHRVGDV
                     QCRYRIVRLPQNADASQGWQTVWQGARPRNKDSKFALIRKIGENI"
BASE COUNT          681 a          790 c          782 g          900 t
ORIGIN      
        1 attttatcga atatcctctt gacgaaacaa cagaaaatag cgagaatgtc ggacttgtct
       61 gtagcatagg tacatcccct atgcccgctt ttttgaaagg aaatcaaatg aaacaaggta
      121 ttcacccgaa ctaccacgaa gtcaacgtta cctgctcttg cggcaacaaa ttcgcaacca
      181 aatccgcgat ggaaaaagaa aacttcaata tcgaggtttg ctccctgtgc cacccgttct
      241 ataccggcac ccaaaaaatc gttgatacca ccggccgcgt ggacaaattc aacaacaaat
      301 tcggcaacct gttcaaacgc tgattgccgc tttgcaagaa ttaagccctg ccatcatttc
      361 gatggcaggg ctttttaata tttggcacac tgacttctta tctatatagt ggattaacaa
      421 aaatcaggac aaggcgacga agccgcagac agtacaaata gtacggaacc gattcacttg
      481 gtgcttcagc accctaaaga atcgttctct ttgagcgaag gcgaggcaac gccgtactgg
      541 tttttgttaa tccactatat tttgacgggg ttgaagttga catctacaag gtttaatgtt
      601 tgaatacatt taaaaatata tttgaatgag atgttttatg attcaaaatg tcgttacttc
      661 aataatcctg tattctggga cagccgtaga cttacttatt atcctaatgt tattttttgc
      721 caaaagaaaa agcagaaaag acatcattaa catctattta ggacaatttc taggctctgt
      781 tagcctgata ttgctaagtt tgctttttgc atttgtctta gattatattc ctagtaaaga
      841 gattttaggt ttgctcggct tgattccgat tttcctaggc atcaaagttt tgctgttagg
      901 agattctgat ggagaggcta ttgccaaaga gggtttgcgc aaagataata aaaacctgat
      961 ttttctagtc gctatgatta cttttgcaag ttgtggtgct gacaatattg gtgtctttgt
     1021 cccatatttt actaccttaa atttagcgaa tttgatagtg gctttactta cctttctagt
     1081 catgatttat ctcttggttt tttctgccca aaaattagca caagtccctt ctgttggaga
     1141 aactttggaa aaatatagca gatggtttgt tgctgttgtt tatttgggat tgggggtata
     1201 tatcctgatt gaaaacaaca gttttgatat gctatggact gtgtcgggcc aggaaaaaat
     1261 attatgaaaa agatagtatc tgcaaagact gccatgtgca gtcttttttg ttgccggtct
     1321 ttttgtgtct gatgctgtct gattttatct gatgccgtct ctgcacgacc tttgtgcgaa
     1381 tatttgctac acttggcaat ccgtccattt cttctcacac ttatgctgac ctatactccg
     1441 cccgatgccc gcccgcccgc caaaacccac gaaaaaccgt ggctgctgct gttgatggcg
     1501 tttgcctggt tgtggccggg tgtattttca catgatttgt ggaatcctgc cgaacctgcc
     1561 gtctataccg ccgtcgaagc actggcaggc agccccaccc ccttggttgc ccatctgttc
     1621 ggtcaaaccg atttcggcat accgcccgtg tatctttggg ttgccgccgc gttcaaacat
     1681 ttgctgtcgc cgtgggctgc cgactcatac gatgccgcac gctttgcagg cgtgtttttc
     1741 gccgttgtcg gactgacttc ctgcggcttt gccggtttca actttttggg cagacaccac
     1801 gggcgcagcg ttgttttaat ccttatcggc tgtatcgggc tgattccgac cgtacacttt
     1861 ctcaatcccg ctgccgccgc ctttgccgcc gccggactgg tgctgcacgg ttattctttg
     1921 gctcgccggc gcgtgattgc cgcctctttt ctgctcggta cgggctggac gctgatgtcg
     1981 ttggcagcag cttatccggc agcatttgcc ctgatgctgc ccttgcccgt actgatgttt
     2041 ttccgtccgt ggcaaagcag gcgtttgatg ttgacggcag tcgcctcact tgcctttgcc
     2101 ctgccgctta tgaccgttta cccgctgctc ttggcaaaaa cgcagcccgc gctgttcgcg
     2161 caatggctcg acgatcacgt tttcggtacg ttcggcggcg tgcggcacgt tcagacggca
     2221 ttcagtttgt tttactatct gaaaaacctg ctttggtttg cactgcccgc gctgccgctg
     2281 gcggtttgga cggtttgccg cacgcgcctg ttttcgaccg actgggggat tttgggcgtc
     2341 gtctggatgc ttgccgtttt ggtgctgctt gccgtcaatc cgcagcgttt tcaggataac
     2401 ctcgtctggc tgcttccgcc gcttgccctg ttcggcgcgg cgcaactgga cagcctgagg
     2461 cgcggcgcgg cggcgtttgt caactggttc ggcattatgg cgttcggact gtttgccgtg
     2521 ttcctgtgga cgggcttttt cgccatgaat tacggctggc ccgccaagct tgccgaacgc
     2581 gccgcctact tcagcccgta ttacgttccc gacatcgatc ccattccgat ggcggttgcc
     2641 gtactgttca cacccttgtg gctgtgggcg attacccgca aaaacatacg cggcaggcag
     2701 gcggttacca actgggcggc aggcgttacc ctgacctggg ctttgctgat gacgctgttc
     2761 ctgccgtggc tggacgcggc gaaaagccac gcgccggtcg tccggagtat ggaggcatcg
     2821 ctttccccgg aattaaaacg ggagctttca gacggcatcg agtgtatcga cataggcggc
     2881 ggcgacctgc acacgcggat tgtttggacg cagtacggca cattgccgca ccgcgtcggc
     2941 gatgtacaat gccgctaccg tatcgtccgc ttgccccaaa atgcggatgc gtcgcaaggc
     3001 tggcagacgg tttggcaggg tgcgcgcccg cgcaacaaag acagtaagtt cgcactgata
     3061 cggaaaatcg gggaaaatat ataaaaaaca acagattgag ccgaatttct ggattaagtg
     3121 ccggaaatcg cgtataattg cgcgattaaa cct
//
LOCUS       DAXIFS010000193         3111 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.193, whole genome shotgun sequence.
ACCESSION   DAXIFS010000193 DAXIFS010000000
VERSION     DAXIFS010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.193"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..211)
                     /locus_tag="ACFOCA_001806"
     CDS             complement(<1..211)
                     /locus_tag="ACFOCA_001806"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988468.1"
                     /translation="MLPTRKTARKIQARHIALPFSGKPQFYRPQERLSKQAQATPPGH
                     FRFHRLSVVRIMQQHHQRITLFGRQQ"
     gene            271..894
                     /locus_tag="ACFOCA_001807"
     CDS             271..894
                     /locus_tag="ACFOCA_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFC6988469.1"
                     /translation="MKKPTDTLPVNLQRRRLLCAAGALLLSPLAHAGAQREETLADDV
                     ASVMRSSVGSVNPPRLVFDNPKEGERWLSAMSARLARFVPEEEERRRLLVNIQYESSR
                     AGLDTQIVLGLIEVESAFRQYAISGVGARGLMQVMPFWKNYIGKPAHNLFDIRTNLRY
                     GCTILRHYRNLEKGNIVRALARFNGSLGSNKYPNAVLGAWRNRWQWR"
     gene            1005..2387
                     /locus_tag="ACFOCA_001808"
     CDS             1005..2387
                     /locus_tag="ACFOCA_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6988470.1"
                     /translation="MARDNRIQMFPHEWRTSTTLSGVYALRMLGMFLVLPVLAVYAAS
                     LPGAEGNKTLVGLAMGIYGLTQALLQLPLGIASDKFGRKKTIYVGLIVFAAGSFLAAA
                     ADTLPMLIAARAIQGAGAVSAAVTALLADLTRDGVRTRAMAMIGLSIGLTFSVSLVVA
                     PVIADAVGVRGLFLLTGILTVASIGVVAWMTPDPEVSKLHEDTQAQPSRIGEVLKNRR
                     LLTLDFGIFALHAAQMALFTALPFAMTQLGLEKIQHWKVYLPSTITGLVVMVPLIIVG
                     ETRNKLKQVFVLGIVCIAAAQLGLLSGMRSVGLITAYLVVYFIGFNVLEASLPSMVSK
                     IAPSDLKGTAMGVYNTMQSLGLFAGGAAGGLLFQKYGFSGVFAFCSILMLLWLVIAVL
                     SPAPKPVKNLSYPVGGVWQGNQEGLYRALSELEGVEDIGFSFDGQTVYLKVLQKGFDQ
                     AAAEKIITGV"
     gene            2391..2915
                     /locus_tag="ACFOCA_001809"
     CDS             2391..2915
                     /locus_tag="ACFOCA_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFC6988471.1"
                     /translation="MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQ
                     RVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANE
                     MKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
                     AAAPVEDIDDDIPF"
BASE COUNT          625 a          841 c          939 g          706 t
ORIGIN      
        1 cctgctgccg cccgaaaagc gtgatgcgct gatggtgctg ctgcataatc cggacgacgg
       61 ataaccggtg aaaacggaaa tgcccgggcg gtgttgcctg tgcctgtttg gacaagcgtt
      121 cttgagggcg gtagaattga ggtttgcccg aaaagggcag ggcgatatgc cgcgcttgga
      181 ttttgcgcgc ggtttttcgc gttggaagca atcattgtct gtttgaatat ttaatgccgt
      241 ctgaaacgtc cggacgcgcc cccgttccct atgaaaaaac cgaccgatac cctacccgtt
      301 aatctgcaac gccgccgcct gttgtgtgcc gccggtgcgt tgttgctcag tcctctggcg
      361 cacgccggcg cgcaacgtga ggaaacgctt gccgacgatg tggcttccgt gatgaggagt
      421 tctgtcggca gcgtcaatcc gccgaggctg gtgtttgaca atccgaaaga gggcgaacgt
      481 tggttgtctg ccatgtcggc acgtttggca aggttcgtcc ccgaggagga ggagcggcgc
      541 aggctgctgg tcaatatcca gtacgaaagc agccgggccg gtttggatac gcagattgtg
      601 ttggggctga ttgaggtgga aagcgcgttc cgccagtatg caatcagcgg tgtcggcgcg
      661 cgcggcctga tgcaggttat gccgttttgg aaaaactaca tcggcaaacc ggcgcacaac
      721 ctgttcgaca tccgcaccaa cctgcgttac ggctgtacca tcctgcgcca ttaccggaat
      781 cttgaaaaag gcaacatcgt ccgcgcgctt gcccgcttta acggcagctt gggcagcaat
      841 aaatatccga acgccgtttt gggcgcgtgg cgcaaccgct ggcagtggcg ttgattttga
      901 acccgcgccg caaccgaaat acggcgaatc ctgtataatc cgaaaatctg ttcactggaa
      961 gttcagacgg cattgcaact gttgatgccg tctgaaaaaa tatgatggca agagacaacc
     1021 gcatccaaat gtttccgcac gaatggcgca ccagtacgac gctttccggc gtgtacgcgc
     1081 tgcgtatgct gggtatgttc ctcgtgctgc ccgtattggc ggtgtatgcc gcctcgctgc
     1141 ccggcgcgga aggcaacaaa acgctggtcg ggctggcaat gggcatttac gggctgacac
     1201 aggctctgct gcaactgcct ttgggcatcg cttccgacaa gttcgggcgc aagaaaacca
     1261 tttatgtcgg gctgattgtg tttgcagcgg gcagcttcct tgccgccgcc gccgatacgc
     1321 tgcccatgct gatcgccgca cgcgccatac agggtgcggg agcggttagt gcggcggtta
     1381 ccgcgctgct ggcggatttg acgcgcgacg gcgtacgtac ccgcgcaatg gcgatgatcg
     1441 gtttgagtat cggtctgacg ttttcggtca gcctcgtcgt tgcccctgtg attgccgacg
     1501 cggtgggcgt acgcggcttg tttctgctga ccggtatttt gaccgttgcc agtatcggcg
     1561 tggtggcgtg gatgactccc gacccggagg tttccaagct gcacgaagat acgcaggcgc
     1621 agccttcgcg cataggcgaa gttttgaaaa accgtaggct gctgacgctc gatttcggca
     1681 ttttcgccct gcacgccgcg caaatggcat tgtttaccgc gctgcctttc gcgatgaccc
     1741 agctcggttt ggaaaaaata cagcattgga aagtctatct gccctcgacc attacgggct
     1801 tggtggtgat ggttccgctg attatcgtcg gcgagacgcg caacaagctc aaacaggttt
     1861 ttgttttggg tatcgtctgt attgcggcgg cgcagctcgg tttgctgtcc ggtatgcgct
     1921 cggtaggctt gattaccgct tatttggttg tttactttat cggttttaat gtgttggaag
     1981 cgagcctgcc gtctatggtt tccaaaatcg cgccgtccga cctgaagggt acggcgatgg
     2041 gcgtgtacaa cacgatgcag tcgctcggac tgtttgccgg cggcgcggca ggcggtttgc
     2101 tgtttcaaaa atacggcttt tccggcgtgt ttgccttttg cagtatattg atgctgctgt
     2161 ggctggtaat tgccgtttta tcgcctgcgc ccaagcccgt caaaaacctc agttaccctg
     2221 tcggcggcgt gtggcagggc aatcaggaag ggttataccg cgccttgtcg gagcttgagg
     2281 gtgtggaaga catcggtttc agtttcgacg ggcagaccgt ctatctcaaa gtgttgcaga
     2341 agggtttcga tcaggctgcc gctgaaaaaa tcatcacagg agtttaaaaa atgtcattga
     2401 acaaagtcat cctcatcggc cgcctcggac gcgatcccga agtgcgctat atgcccaacg
     2461 gcgaggcggt ttgtaatttc agcgtcgcca ccagcgaaac ttggaacgac cgcaacggcc
     2521 aacgtgtaga gcgtactgag tggcacaaca tcaccatgta ccgcaaactg gcggaaattg
     2581 ccgggcaata cctcaaaaaa ggcgggctgg tttatctgga aggcagaatc caaagccgca
     2641 aataccaagg caaagacggc atcgaacgca ccgcttacga tattgtcgcc aacgaaatga
     2701 aaatgttggg cgggcgcaat gaaaacagcg gcggtgcgcc ttacgaggaa ggttacggtc
     2761 agagtcagga ggcttaccaa cgccccgcgc agcaaagccg gcagcccgcc tccgacgcgc
     2821 cgtcccatcc ccaagaagca ccagccgcgc cgcgccgcca acccgtgcct gccgccgccc
     2881 cggtcgagga cattgacgac gatatcccgt tctgaatttt acggccggac atcctcgcgg
     2941 agggaaatca taaaggacgg agaaacctta aaccttacgg ggcagggttt ctcttttttg
     3001 catttgggcc ggcttgttgc cgccctttgc gttgggcgga acgttgcgat tgcgccgttc
     3061 gggcgttttg aggcagtgat gcctgccgca cgtccccgct gttttcagac g
//
LOCUS       DAXIFS010000194         3097 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.194, whole genome shotgun sequence.
ACCESSION   DAXIFS010000194 DAXIFS010000000
VERSION     DAXIFS010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.194"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(311..787)
                     /gene="greA"
                     /locus_tag="ACFOCA_001810"
     CDS             complement(311..787)
                     /gene="greA"
                     /locus_tag="ACFOCA_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFC6988472.1"
                     /translation="MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSE
                     NAEYEAAKELQGFIEGRISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEH
                     VTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI"
     gene            1182..2483
                     /gene="aroA"
                     /locus_tag="ACFOCA_001811"
     CDS             1182..2483
                     /gene="aroA"
                     /locus_tag="ACFOCA_001811"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFC6988473.1"
                     /translation="MTESVRLPVARLKPSTVALPGSKSISNRTLLLAALSDNACEIHS
                     LLKSDDTDRMLEALDKLGVQIEYLAEDRLKVHGTGGRFPNRTADLFLGNAGTAFRPLT
                     AALAVLGGDYHLHGVPRMHERPIGDLADALRIAGADVEYLGKEHYPPLHIGKRQDNGE
                     RVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVAN
                     ENYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVRVTGIGANSIQGDVA
                     FARELEKIGADVVWGENFVEVSRPKERAVQSFDLDANHIPDAAMTLAIVALATGQTCT
                     LRNIGSWRVKETDRIAAMANELRKLGAKVVEEAEAIHITPPKTLTPDAVIDTYDDHRM
                     AMCFSLVSLLGVPVVINDPKCTHKTFPTYFDVFSSLTETTE"
     gene            complement(2526..3059)
                     /locus_tag="ACFOCA_001812"
     CDS             complement(2526..3059)
                     /locus_tag="ACFOCA_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6988474.1"
                     /translation="MFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRI
                     SHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTAR
                     DMAAASRKIPDSRLKAGDLVFFNTGGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLS
                     TPFYAKNYLGAHTFFTE"
BASE COUNT          649 a          829 c          841 g          778 t
ORIGIN      
        1 attttaggtt tctgattttg gttttctgtt tttgagggaa tgacgggatg caggttttct
       61 taaccctgcg tcctagattc ccgcttttgc gggaatgacg gcgacagggt tgctgttata
      121 gtggatgaac aaaaaccagt acggggttgt ctcgccttag ctcaaagaga acgattctct
      181 aaggtgctga agcaccaagt gaatcggttt cgtactatct gtactgtctg cggcttcgtc
      241 gccttgtcct gatttttgtt aatccactat aatttcctgc gtgtgtcggg tgtatcgaaa
      301 tcaagccgaa tcaaatatat cggacttcga taatgtcgta ttcgcgcacg ccgcccgggg
      361 cttggacttc cgccgtatcg ccctcttcct tgccgattaa ggcgcgggca atcggtgagc
      421 cgacatagat tttgccctgt ttgatgtcgg cttcgtcttc gccgacaatt tgataggtaa
      481 cgtgttcttc cgtttccaaa tcttccagcg taaccgtcgt accgaacacg attttgcctt
      541 cggcgtggat ttcggtcgga ttgatgatgt gggcaacgga aagtttgtgt tccagctcgg
      601 aaatgcggcc ctcgataaag ccttggagtt ctttggcggc ttcgtattcg gcgttttcgg
      661 acaaatcgcc gtgcgaacgg gcttcggcaa tcgcttcgat cacttcggga cgcgccacgc
      721 ttttgagctg ctgcaattcc tgtttcagca attccgcacc gcgtacggtc agggggattt
      781 tttgcatcgg tcttttttct ccatattccg gcacaccgtt ttgcggcagc aagcataccg
      841 cgtaccgtct tgttttgtgc gtccggatat taaaataaaa atacaagccg cccggaaaat
      901 cggcggcttg tctgtcgttg aacagcggct attctaccaa attctatgaa attggcaatc
      961 gtgccgtgcc gccgacaaac gcgccatgtc cgcaacaaaa gctgaaaata tgccgtcaaa
     1021 gaaattttag aaacaaaaaa tttaaaaata atcaattttc ggcataaaaa accacattta
     1081 cggactttaa aaccgaaaat gccaagcctg agatttttca tacagcattt gcaccagtat
     1141 aatgcaggct gtttttatct ttataatatt gacgttttgc catgaccgaa tccgtccgcc
     1201 tccccgtcgc ccgtctcaaa ccttccaccg tcgccctgcc cggctccaaa agcatcagca
     1261 accgcaccct gctgcttgcc gccttgtccg acaatgcttg cgaaatccat tccctgctca
     1321 aatccgacga taccgaccgt atgctcgaag cactcgataa actcggcgtt caaatcgaat
     1381 atcttgccga agaccgtctg aaagtgcacg gcacaggcgg acgcttcccc aaccgcactg
     1441 ccgatttgtt tttgggcaac gcgggcacgg cgttccgtcc gctgactgcc gcacttgccg
     1501 ttttgggcgg cgattatcat ctgcacggcg tgcctcgtat gcacgaacgc cccatcggcg
     1561 atttggccga tgcgctgcgg attgccggcg ccgatgtcga atatctcggc aaggaacact
     1621 atccgccgct tcatatcggc aaacgtcaag acaacggcga acgcgtgatt ccgattaaag
     1681 gcaatgtgtc cagccagttt ctgaccgccc ttttaatggc gttgccgctg accgggcagg
     1741 cgtttgaaat ccgtatggtc ggcgaattga tttccaagcc ctatatcgac attactttaa
     1801 aactgatggc gcaattcggc gtacaggttg ccaatgaaaa ctaccgcgtc ttcaaaattc
     1861 ccgccgatgc gcactaccac gcgcccgaac acttgcacgt cgaaggcgat gcctccagcg
     1921 cgtcctactt cctcgcagcc ggtttgattg ctgccacgcc cgtgcgcgtg accggcatcg
     1981 gcgcaaacag catacagggc gatgtcgcct ttgcccgcga gctggaaaaa atcggggcgg
     2041 acgtggtttg gggcgaaaac ttcgtcgaag tttcacgccc gaaggaacgt gccgtccaat
     2101 cctttgattt ggatgcgaac catatccccg atgccgccat gaccctcgcc atcgtcgcgc
     2161 ttgctacagg gcaaacctgc acgctgcgca acatcggttc gtggcgcgtc aaagaaaccg
     2221 accgcatcgc cgcgatggca aacgagttgc gcaaactcgg ggcaaaagtc gtcgaagaag
     2281 ccgaagcaat tcacatcacc ccgcccaaaa cgctgacacc cgacgccgtc atcgacacgt
     2341 acgacgacca ccgcatggcg atgtgtttct cgctggtttc gctgttgggc gtacccgtcg
     2401 tcatcaacga tccgaaatgc acccataaaa ccttcccgac ttatttcgac gtgttctctt
     2461 cactgaccga aacaacggaa taaggcggca ttttgccgcg attccggcgc ggcgcggcgg
     2521 gcggctcatt ctgtaaagaa agtatgtgcg ccgaggtagt ttttggcgta aaacggtgtg
     2581 gagagttttt cggttttgat ggttttgccg ctgctggggg catggatgaa ttcgccgttg
     2641 ccgatataga gtccgacgtg tgagtagcgg tgtgtgccgc cggtgttgaa gaatacgagg
     2701 tcgccggcct taaggcggct gtcggggatt ttgcggcttg ccgccgccat gtcgcgggcg
     2761 gtgcgcggca gcttgacgtt gagggcgttt ttgtaaacga attgaatcat gccgctgcaa
     2821 tcgaagccgg ttgcggtgct gctgccgccc catttgtagg gcgtgccgat gagtccgagg
     2881 ctgtggagca tgagttcctg cgagccttgt gtgcggtcga tgtggctgat gcggacggct
     2941 tggatttgcc ggactgtctg tttgggtttc ggttggcggt gtttgccgga ggtcgtgccg
     3001 catgaggcga ggagcagtgc gctgagacag aggaaaaggg ttttgtcggg gggaaacatg
     3061 gtttttcctt tgcgggttcg gatatccgtc tgaaggt
//
LOCUS       DAXIFS010000195         3078 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.195, whole genome shotgun sequence.
ACCESSION   DAXIFS010000195 DAXIFS010000000
VERSION     DAXIFS010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.195"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            147..776
                     /locus_tag="ACFOCA_001813"
                     /pseudo
     CDS             147..776
                     /locus_tag="ACFOCA_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(823..2232)
                     /gene="dacB"
                     /locus_tag="ACFOCA_001814"
     CDS             complement(823..2232)
                     /gene="dacB"
                     /locus_tag="ACFOCA_001814"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HFC6988475.1"
                     /translation="MNFPKTAASLLLLLASLAAHALDTGRIPQNEIAVYVQELDSGKV
                     IIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGS
                     GDPVFNQENLLAVQRQLREQGIRNITGHLMLDHSLWGEVGSPDDFEADSGSPFMTPPN
                     PTMLSAGMVMVRAERNAADSTDILTDPPLPHIFAQNNLKITASQAACPSIKKLMRASF
                     SDNTLKLRGNIPESCLGKPVGVRMFALDELIRQSFTNHWLLGGGRISDGIGISDTPEG
                     AQTLAVAHSKPMKEILTDMNKRSDNLIARSVFLKLGGDGKLPAVSEQAASAVRRELAV
                     SGIDIADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQDFIDTLPIAGTDGTLRN
                     RFKQSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSGRAVSLLPDLDNFVAKNI
                     ISGGDGWLDAKLMCKERRA"
     gene            2397..2963
                     /locus_tag="ACFOCA_001815"
     CDS             2397..2963
                     /locus_tag="ACFOCA_001815"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HFC6988476.1"
                     /translation="MAKKISILVGSLRRASFARKVALNAAEMFPEGWQAEIVEIGHLP
                     LYNFDYDDPAVEDVPLPESYTVFRETIKASDGILFVTSENNRTIPACLKNAVDIGSKP
                     NADVAWKNKPAGIISHSVGKMGGYSSQKNLRLALSYFDMPVTGQPEVFLGNSPTLFDE
                     NGKLIDSARDFVQSYINQFVGLIERNAK"
BASE COUNT          756 a          714 c          825 g          783 t
ORIGIN      
        1 atagtggatt aaatttaaac cggtacagcg ttgcctcgcc ttagctcaaa gagaacgatt
       61 ctctaaggtg ctcaagcacc aagtgaatcg gttccgtgct atttgtactg cctgcggctt
      121 cgtcgccttg tcctgattta aatttaatcc actataaact cattgaactg tttgtcgcag
      181 gcgtaactgc aagaaaggca gcagagttag taggcgttaa taaaaatacc gcagcctatt
      241 attttcatcg tttacgatta cttatttatc aaaacagccc acatttagaa atgtttgatg
      301 gcgaagtaga agcagatgaa agttattttg gcggacaacg caaaggcaaa cgtggtcgcg
      361 gtgctgccgg taaagtcgcc gtattcggtc ttttgaagcg aaatggtaag gtttatacgg
      421 ttacagtacc gaatactcaa accgctactt tatttcctat tatccgtgaa caagtgaaac
      481 ctgacagcat tttttgtagc tatgatgtat tagatgtgcg cgaatttagc cattttagct
      541 tcgctgaaac ttcgttttcg tatcaatcac agcacacatt ttgccgaacg acaaaaccat
      601 attaatggaa ttgagaactt ttggaaccag gcaaaacgtc atttacgcaa gtttaacggc
      661 attcccaaag cgcattttga gctgtattta aaggagtgcg aatggcgttt taacaacagt
      721 gagataaaag ttcttgttcc atcttaaaac aattagtaaa accgagttta tcctagttat
      781 ctaggacagc cccttaaatt taatccacta tattttcctg tttcaggctc ggcgttcttt
      841 gcacatcagt ttcgcatcca gccagccgtc gccgccggag atgatgtttt tggcaacgaa
      901 gttgtccaag tcgggcagca gggaaacggc gcggccgctg ttgatgatga cgaccaccgc
      961 catcggtttg tcgcccagcc aataacctgc aagggcgcgg acattgttga gcgtgccggt
     1021 ttttaagcgc aacagcccgc cgctttgttt gaagcggttg cgtaaagttc cgtctgtgcc
     1081 ggcgatgggc agcgtgtcga tgaaatcttg tgcaaacggg ctgaaataag ccgtttccaa
     1141 catttgcgcc atcattctcg ccgttaccct ttcttttctg gacagacctg aaccgttttc
     1201 caaaaccaaa tccgcaatat cgatgcccga cacggcaagt tcgcgccgga cggcagacgc
     1261 cgcctgttcg gaaacggcgg gcagtttgcc gtcgccgccg agtttgagga agacggaacg
     1321 cgcaattaga ttgtccgaac gcttgttcat gtccgtcaaa atttccttca tcggctttga
     1381 gtgtgcaacg gcaagcgtct gcgcgccttc cggcgtgtcg gatatgccga tgccgtctga
     1441 aatccgtccg ccgccgagca gccagtggtt ggtaaaactt tgccggatca gttcgtcaag
     1501 cgcgaacatc cggacaccga caggcttgcc caaacagctc tcgggaatat tgccgcgcaa
     1561 tttcagcgta ttgtccgaaa aagatgcacg catcagtttt ttgatcgaag ggcaggcagc
     1621 ttgggaggcg gtaattttca agttgttttg ggcgaaaata tgcggcaaag gcggatcggt
     1681 gaggatgtcg gtactgtcgg cggcattgcg ttcggcgcgc accataacca taccggcaga
     1741 cagcatagtt ggattggggg gcgtcataaa cggcgaaccg ctgtcggctt cgaaatcgtc
     1801 ggggctgccg acttcgcccc acaggctgtg gtcgagcatc aggtgtcccg tgatattgcg
     1861 tatgccttgt tcgcgcaact ggcgttggac ggcaagcagg ttttcctgat tgaaaacggg
     1921 gtcgccgctg cccgcccaat acaggtttcc gtcaagcgtg ccgtcgttta ccgtaccgtt
     1981 gcttttaaac tcggtcgccc agcggtaatt gctgccgaag gttttgaagg cggcaaacgc
     2041 ggtaacgagt ttcattgtgg aggcggggtt gacggggaca tccgagcggt ggtcaatgat
     2101 gacttttccg ctgtcaagct cttggacata tacggcgatt tcgttttgcg gaatgcgacc
     2161 tgtatcgagc gcgtgtgcgg cgagggaggc gagaagcagc agcagggagg ccgctgtttt
     2221 ggggaaattc ataggtaaat ctgttacata aaaaaagcaa ttataaggca aagccggata
     2281 agtgggaacg ctgtggcggc gggccggctt gtttgcaggg gaaatcacat atataataat
     2341 cgctatcatt atgaaatgat tgagacgcac aaacttaata ttcaggagga atgattatgg
     2401 ctaagaaaat cagtattttg gtgggcagcc tgcgccgtgc ttcttttgcg cgcaaagtgg
     2461 cattgaatgc ggcggagatg ttccccgaag gctggcaggc ggaaatcgtc gaaatcggac
     2521 atctgccgct ttacaatttc gattatgacg accctgcggt ggaagatgtg ccgctgcccg
     2581 aaagctacac ggttttccgc gaaacgatta aggcttcgga cggcattttg ttcgttacgt
     2641 ccgaaaataa ccgcaccatt cccgcctgtt tgaaaaatgc ggtggacatc ggctcgaaac
     2701 cgaatgccga cgtggcgtgg aaaaacaaac cggccggcat catcagccat tccgtcggca
     2761 agatgggcgg ttacagttcg caaaaaaacc tgcgccttgc gctgtcttat ttcgatatgc
     2821 ccgtaaccgg acagccggaa gtgtttttgg gcaattcgcc gacactgttt gatgaaaacg
     2881 gcaaattgat cgactcggca agggattttg ttcagtcata tattaatcag tttgtcggtt
     2941 tgattgaaag aaatgccaaa taaacaaaca agtcgaaagg ccgcaaaacc ggttcgggtt
     3001 ttgcggcttt tttatatggg ctgggcagcg tcaaggtttg ccgtttgccg gataatgcgc
     3061 ggcaaatgac cggcgtgt
//
LOCUS       DAXIFS010000196         3069 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.196, whole genome shotgun sequence.
ACCESSION   DAXIFS010000196 DAXIFS010000000
VERSION     DAXIFS010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.196"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..527
                     /locus_tag="ACFOCA_001816"
     CDS             <1..527
                     /locus_tag="ACFOCA_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HFC6988477.1"
                     /translation="NLSIGDYSQIDDFVFFNCGEKSILGSFVHISSFTSIIGGGEFYM
                     DHFSGLSAGCRIITGSDDFMGGGLTNPTVPSKYTNVKKSSVRIGKHAILGTNVTVLPG
                     VTIGDGVAVGAGAIVRKNLEPWTIYVGVDCKPLKRRSQDKILELEKHLVAEFNLDLCP
                     IIPSPNLPKPKETR"
     gene            524..1087
                     /gene="gmhB"
                     /locus_tag="ACFOCA_001817"
     CDS             524..1087
                     /gene="gmhB"
                     /locus_tag="ACFOCA_001817"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFC6988478.1"
                     /translation="MKLIILDRDGVINQDRDNFVKSVDEWIPVEGSMDAVAFLTQAGY
                     TVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKP
                     KPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHEL
                     PEHTQVFDTLLDFSQYIMQENAAPQAD"
     gene            1117..1860
                     /locus_tag="ACFOCA_001818"
     CDS             1117..1860
                     /locus_tag="ACFOCA_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6988479.1"
                     /translation="MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVKI
                     LNLSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFK
                     IPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLARKNEGYWITIFPEGTRLAPGKRGK
                     YKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELM
                     EKCEHLIETQQPLISGAGPFAAKMPSETA"
     gene            1857..2549
                     /locus_tag="ACFOCA_001819"
     CDS             1857..2549
                     /locus_tag="ACFOCA_001819"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6988480.1"
                     /translation="MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCF
                     SVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPEHIWFHGRQLALTAHQDTQILLMP
                     SEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPAPSSLTSAKTFWGV
                     CRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHADHSRAFWALTRRFAPYTPEAKQW
                     LKIHGRELFALG"
     gene            2507..2845
                     /locus_tag="ACFOCA_001820"
     CDS             2507..2845
                     /locus_tag="ACFOCA_001820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988481.1"
                     /translation="MAQNPRQGTFRLRLTRPGQASANSDLLPNGHPESSITAGDTYRC
                     RRFQTASVPEQARARPIQTAMTLCRRFGAGWRHTRRLPRFISHRPSETRNPPGPTCGM
                     KRLSWREVFY"
BASE COUNT          779 a          920 c          738 g          632 t
ORIGIN      
        1 aaaatttatc aattggggat tattctcaaa ttgatgattt tgtatttttt aattgtggag
       61 agaaaagtat tttaggaagt tttgttcata tatcatcatt taccagtatt attggtggtg
      121 gagaatttta tatggatcat ttttcaggat taagcgcagg gtgtagaatt attaccggta
      181 gcgatgattt tatggggggg gggttaacca atccaacagt cccatctaaa tatactaatg
      241 ttaaaaaatc tagtgttaga attggaaaac atgcaatttt aggaacaaat gtaacagtat
      301 taccaggcgt tactattggt gatggggttg ctgttggagc aggggctata gtgagaaaaa
      361 atcttgagcc gtggactatt tatgtcgggg tagattgtaa accactgaag cgcagatcac
      421 aagataaaat attggagtta gagaaacatc ttgtagcaga atttaatcta gatttatgtc
      481 ctataatccc atccccgaac ctgcccaaac caaaggaaac gcgatgaaac tcatcattct
      541 cgaccgcgac ggcgtcatca atcaggaccg cgacaacttc gtcaaatccg ttgacgagtg
      601 gatacctgtc gaaggcagca tggatgcggt ggcatttctg acgcaggcag gctacaccgt
      661 cgccgttgcc accaaccaat ccggcatcgg gcgcaaatat tttaccgttc aaaaccttac
      721 cgaaatgcac gccaaaatgc accgcctcgt ccgtcaggca ggcggcgaaa tcaacggcat
      781 ctggttctgc ccgcacaccg atgccgacaa ctgcaactgc cgcaagccca aaccgggtat
      841 gattgaagac atcatcggac gcttcaacgc ccaagcctcg gaaacctggc tggtcggcga
      901 cagcctgcgc gatttgcagg caatcgatgc cgtcggcgga aaacccgcgc tggttctgac
      961 cggaaaaggc aaaaaaacgc tctcccaaca cggacacgaa ttacccgaac acacacaggt
     1021 tttcgatacc ttgctcgatt tctcacaata catcatgcag gaaaacgccg caccgcaagc
     1081 cgactgaaca taccgcattt ccgacaaggc aaaaccatgc tcatcatccg caacctgatt
     1141 tactggctga tactctgttc caccctgatt ttcctctttc cctttatgct gctcgcctcg
     1201 cctttccggg acggggcgca caagatggcg cgggtctggg tcaaaatcct caacctctcg
     1261 ctcaaacaca tcgtcgggct caaataccgc atcatcggcg cggaaaacat ccccgaccgc
     1321 cccgccgtca tctgcgccaa acaccaaagc ggctgggaaa cgctcgccct tcaggacatt
     1381 tttccgccgc aggtttacgt tgccaaacgc gagttgttca aaatcccctt tttcggctgg
     1441 ggcttgaaac tggtcaaaac cataggcata gaccgcaaca accgccgcga agccaacgag
     1501 cagctcataa aacaggggtt ggcgcgcaaa aacgaaggct attggattac cattttcccc
     1561 gaaggcacgc gccttgcgcc cggaaaacgc ggcaaataca aactcggcgg cgcgcgcatg
     1621 gcgaaaatgt ttgagatgga catcgtcccc gtcgccctca acagcggcga attttggccg
     1681 aaaaactcct ttctgaaata tccgggggaa atcaccgtcg tcatctgtcc gaccatcccg
     1741 cacgcaagcg gcagcgaagc cgaattgatg gaaaaatgcg aacatctcat cgaaacgcaa
     1801 caaccgctta tttccggcgc aggcccgttt gccgccaaaa tgccgtctga aaccgcatga
     1861 ccgcctttgt ccacaccctt tcagacggca tggaactgac cgtcgaaatc aagcgccgtg
     1921 ccaagaaaaa cctgattatc cgccccgccg gcacacatac cgtccgcatc agcgtcccac
     1981 cctgcttctc cgtctccgct ctaaaccgct ggctgtatga aaacgaagcc gtcctgcggc
     2041 aaacactggc gaaaacaccg ccgccgcaaa ctgccgaaaa ccggctgccc gaacatatct
     2101 ggttccacgg cagacagctt gccctcaccg cccatcaaga cacgcaaatc ctgctgatgc
     2161 cgtctgaaat ccgtgttccc gaaggcgcac ccgaaaaaca gcttgcgctg ctgcgggact
     2221 ttttggaacg gcaggcgcac agttacctga ttccccgcct cgaacgccac gcccgcacca
     2281 cacaactgtt ccccgccccc tcctcgctga cctctgccaa aaccttctgg ggcgtgtgcc
     2341 gcaaaaccac aggcatacgc ttcaactggc ggctagtcgg cgcaccggaa tacgttgccg
     2401 actatgtctg catacacgaa ctctgccacc tcgcccacgc cgaccacagc cgcgcgttct
     2461 gggcactgac ccgccgcttc gcaccctaca cgcccgaagc gaaacagtgg ctcaaaatcc
     2521 acggcaggga acttttcgcc ttaggctgac gcggcccggg caggcatccg ccaattcaga
     2581 cctcctccca aacggacatc cggaaagcag catcacagcc ggcgacacat accgctgccg
     2641 ccgctttcag acggcatccg tgccggaaca ggcacgcgcc cgcccgattc aaaccgcgat
     2701 gacgctttgc cgccggttcg gggcaggatg gcggcacaca cgccgtctgc cgcgtttcat
     2761 ttcacaccgc ccttccgaaa cccgaaaccc gcccggtccg acgtgcggta tgaaacgctt
     2821 aagctggcgc gaagtctttt actgatttgc ccgcgaaaat gccgtctgaa aggttttcgg
     2881 acggcatttt tttgcgtttc ccaggatggc ggcggattcg taaaaggcgg tcagggtgga
     2941 ttgtaggatg ggttgagacc tgccgaatcc gccgcatctg ccaaatctac cgccgtcatt
     3001 cctacgaaag tgggaatcta gaacgcgggg ttaagaaaac ctgcatcccg tcattcccac
     3061 gaaagtggg
//
LOCUS       DAXIFS010000197         3059 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.197, whole genome shotgun sequence.
ACCESSION   DAXIFS010000197 DAXIFS010000000
VERSION     DAXIFS010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.197"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            123..1667
                     /gene="purF"
                     /locus_tag="ACFOCA_001821"
     CDS             123..1667
                     /gene="purF"
                     /locus_tag="ACFOCA_001821"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFC6988482.1"
                     /translation="MCGVLGLVSHEPVNQLLYDGLQMLQHRGQDAAGIVTAEGGTFHM
                     HKGKGMVREVFRTRNMRDLTGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHN
                     GNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNADNIFN
                     AVAEVHRLVRGAYGVVAMIAGYGMLAFRDPYGIRPLVLGSQTDSEGRKSYAVASESVA
                     FNALTYDLERDIRPGEAVFVGFDGTMIARQCSDRAKLSPCLFEYVYFARPDSVIDSVS
                     VYQSRLDMGVSLAEKIKRELPVDGIDVVMPIPDTSRPSAMELAVHLDKPYREGLIKNR
                     YIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAG
                     ARKVYIASAAPEVRYPNVYGIDMPTREELIANERSAAEIAAEIGANGIVFQNLSDLEA
                     VVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISIS
                     DAGDEE"
     gene            1767..2258
                     /gene="greB"
                     /locus_tag="ACFOCA_001822"
     CDS             1767..2258
                     /gene="greB"
                     /locus_tag="ACFOCA_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HFC6988483.1"
                     /translation="MSTETKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGD
                     RSENGDYLYGKRRMREIDRRIRFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDG
                     REQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI
                     KID"
     gene            2317..2943
                     /locus_tag="ACFOCA_001823"
     CDS             2317..2943
                     /locus_tag="ACFOCA_001823"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFC6988484.1"
                     /translation="MRKIRTKICGITTPEDASAAVAAGADAVGLVFFQGSSRAVDIAR
                     AKKITAALPPFVSVVALFVNESAQNIRRILAEVPIHIIQFHGDEDDTFCRQFDRPYIK
                     AIRVQTASDIRNAADRFPDAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGG
                     LTPENVGEAVRITGAEAVDVSGGVEASKGKKDPAKVAAFIATANRLSR"
BASE COUNT          744 a          928 c          793 g          594 t
ORIGIN      
        1 cttattctcc ataaacccac ctatctgtcc ttcgctcaaa tattgtcaac aattcaggca
       61 aaaaaccacc gtttgcttta taattccgtt ttacccttaa acctcgaatc ggagaagacg
      121 atatgtgcgg cgtattaggt ttggtcagtc atgaacccgt gaaccagctt ctgtacgacg
      181 gtttgcagat gttgcagcac aggggacagg atgcggcggg cattgtaacg gccgaaggcg
      241 gtaccttcca tatgcacaaa ggcaaaggga tggtgcgcga agtgttccgc acgcgcaata
      301 tgcgtgattt gaccggcaac gccggcatcg cccacgtccg ttatcccacg gcgggcaacg
      361 ccggcagcag cgcggaggcg cagcctttct acgtcagctc gccgttcggc atcgttttgg
      421 cgcacaacgg caacctcacc aacactgccg aactttatga aaacgtgtgc aacaaacacc
      481 tacgccacgt caacaccagc tccgattccg aagtcttgct caacgtattc gcgcacgaat
      541 tgcgccgcga agtctctaaa aacgccgacc cgcatcggct caatgccgac aatattttca
      601 acgccgttgc cgaagtccac cgcctggtgc gcggcgcata cggcgtggtt gccatgattg
      661 cgggctacgg tatgcttgcc ttccgcgacc cttacggcat ccgcccgctg gtattgggtt
      721 cgcaaaccga cagcgaaggc agaaaatcct atgccgtcgc ctccgaatcc gtcgccttca
      781 acgcgcttac ctacgatttg gaacgcgaca tccggccggg cgaagcggta tttgtcggct
      841 ttgacggcac aatgattgcc cgccaatgca gcgaccgtgc caaactcagc ccctgccttt
      901 ttgaatatgt ttattttgcc cgccccgact ctgtgattga cagcgtatcc gtttaccaat
      961 cgcgcttgga tatgggcgtg tcgctggcgg aaaaaatcaa acgcgagctg cccgtggacg
     1021 gcatcgacgt tgtgatgccc atccccgaca ccagccgccc cagcgcgatg gagcttgccg
     1081 tccatctcga caaaccctac cgcgagggtt tgattaaaaa ccgctatatc ggccgcacct
     1141 ttattatgcc cggacaggcg acgcgcaaaa aatccgtgcg ccaaaaactc agcccgatgg
     1201 aaaccgaatt tgcaggcaaa agcgtgttgc tggtggacga ctccatcgtg cgcgggacga
     1261 ccagccgcga aatcgtcgaa atggtacgcg cggcgggcgc gcgcaaagtc tatatcgcct
     1321 ccgccgcgcc cgaagtgcgc tatcccaatg tgtacggcat tgatatgccc acgcgcgaag
     1381 agttgattgc caacgagcgc agcgcggcgg aaatcgccgc cgaaatcggc gcaaacggca
     1441 tcgtgttcca aaatttgagc gatttggaag ccgtcgtcaa agcactcaat ccgaaaatcg
     1501 aatccttcga ttcgtcctgt ttcaacggca tttatcagac cggcgacatc gatgatgcct
     1561 acctcgaccg cctgtctgcc gagaaatccg gctgcggcgg tctgaaaatc cacccgagca
     1621 ggatggaaca cagcatcagc atcagcgatg cgggcgacga agaataaggc ttcccaaacc
     1681 gcgatgccgt ctgaaatccg aacgccgggt tttcagacgg catttcccat atcggcatca
     1741 catttcccgt ttcatccgca cacaatatga gtaccgaaac caaaaactac attacgcccg
     1801 ccggatggca ggcattgaaa gacgagcttt atcaactggt caacaaagaa cgccccgaaa
     1861 tcgtccaaat cgtcaactgg gcggcaggca acggcgaccg cagcgaaaac ggcgactatc
     1921 tttacggcaa acgccgtatg cgcgaaatcg accgccgcat ccgtttcctg accaagcgtt
     1981 tggagtccgc cgtcgtcgtc gatcccgaat tgcgcgaagc gaccgaccaa gtatttttcg
     2041 gcgcgaccgt cggcctgttg cgcggcgacg ggcgcgagca aaccgtcaaa atcgtcggca
     2101 tcgatgaaat cgataccgcg caaaacaaaa tttcttggat ttcgccgttg gcgcgttgcc
     2161 tgattaaagc gcgcgaaggc gacgaagtgg ttttgaacac gccggaaggg cgtgaggaaa
     2221 ttgaaatcct ttctgtcgaa tacatcaaaa tcgactgatc gggaatgccg tctgaaacgg
     2281 tgcaaacgca tcgtttccca aataaaggaa taccgaatga ggaaaatccg caccaaaatc
     2341 tgcggcatca ccacaccgga agacgcatcg gccgccgtag cggcaggtgc agatgccgtc
     2401 gggctggtct ttttccaagg cagcagccgg gccgtcgata ttgcccgcgc caaaaaaatc
     2461 accgccgcac tgccgccgtt tgtcagcgtt gtcgcccttt tcgtcaacga aagcgcgcaa
     2521 aacatccgcc gcatccttgc cgaagtgccg atacacatca tccaattcca cggcgacgaa
     2581 gacgacacat tctgccgcca gttcgaccgc ccctatatca aggccattcg tgttcagacg
     2641 gcatcagaca tccgaaacgc cgccgaccgc ttccccgacg ctcaggcact gctgttcgat
     2701 gcctaccacc cttcggaata cggcggcacc ggacaccgct tcgactggac gctgctggcg
     2761 gaatattcgg gcaaaccgtg ggtgcttgcc ggcgggctga cccctgaaaa cgtcggcgaa
     2821 gccgtccgca tcaccggagc ggaagcggtc gatgtatccg gcggcgtgga agcgtctaaa
     2881 ggcaaaaaag acccagccaa agtcgccgcc tttatcgcaa ccgccaaccg cctatcccgt
     2941 taaagcaaca aaaattgccg ccggaatgac ttatagtgga ttaacaaaaa ccagtacggc
     3001 gttgcctcgc cttagctcaa agagaacgat tctctaaggt gctgaagcac caagtgaat
//
LOCUS       DAXIFS010000198         2999 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.198, whole genome shotgun sequence.
ACCESSION   DAXIFS010000198 DAXIFS010000000
VERSION     DAXIFS010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.198"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..209)
                     /locus_tag="ACFOCA_001824"
     CDS             complement(<1..209)
                     /locus_tag="ACFOCA_001824"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988485.1"
                     /translation="MPSEAFRQQAARSTPCGFFLRISAAKAQTLKLPTPFFAFLFFDT
                     RAFVLFPAIPKTKSGRNLSEKQQPFR"
     gene            complement(213..1847)
                     /gene="groL"
                     /locus_tag="ACFOCA_001825"
     CDS             complement(213..1847)
                     /gene="groL"
                     /locus_tag="ACFOCA_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271863.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFC6988486.1"
                     /translation="MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAF
                     GGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAE
                     GMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGA
                     IIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP
                     FVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAV
                     KAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIID
                     GFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESP
                     LRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAA
                     SIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMGGMM"
     gene            complement(1940..2230)
                     /locus_tag="ACFOCA_001826"
     CDS             complement(1940..2230)
                     /locus_tag="ACFOCA_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFC6988487.1"
                     /translation="MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVG
                     AGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK"
     gene            2459..>2999
                     /locus_tag="ACFOCA_001827"
     CDS             2459..>2999
                     /locus_tag="ACFOCA_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element IS1016C family transposase"
                     /protein_id="HFC6988488.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAVLFY
                     RKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRV
                     YTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQ
                     NHINGIENFWNQAKRVLRKY"
BASE COUNT          646 a          774 c          779 g          800 t
ORIGIN      
        1 cggaaaggtt gctgtttttc cgataaattc ctgccgctct tcgtttttgg aatggcggga
       61 aataaaacaa aagcgcgcgt atcaaaaaac aaaaatgcaa agaacggcgt tggcaatttt
      121 aaggtttgcg ccttagccgc acttattcgc aaaaaaaaac cgcacggcgt tgaccgtgcg
      181 gcttgttgtc tgaaggcttc agacggcatt gcttacatca tgccgcccat accacccatg
      241 ccgcccatat caggcacagc cggtttgtct tcggggattt cagcgatcat gcaatcagtg
      301 gtcagcatca agccggcgat agatgcggcg tgttgcagcg cggaacgggt tactttggcg
      361 gggtcgagta cgcccatttc gatcatgtcg ccgtattcgc cgctgccagc gttgtaaccg
      421 tagttgcctt tgccttccaa tactttgttc acaaccacgc tgggttcgcc gcctgcgttg
      481 gcaacgattt ggcgcagcgg agactcaacg gcgcgcaaga cgatttgtac gcctgcgtct
      541 tggtcggcat tgccggtgtg caggttttcc aaagcagcac gggcacgcaa cagggctacg
      601 ccgccgcctg caaccacgcc ttcttcaacg gctgcgcggg tagcgtgcag cgcgtcttcc
      661 acgcggtctt ttttctcttt catttcgact tcggtcgcgg caccgacttt gatgactgcc
      721 acgccgcctg ccaatttagc cacgcgctct tgcagttttt ctttgtcgta atcgctggtt
      781 gcggtttcga tttgttggcg gatttcggca acacgcgctt cgatttgggc tgcgtcgcca
      841 aagccgtcga tgatggtggt gttttcttta ccgatttcga tgcgtttggc ttgacccaag
      901 tcgtccaaag tcgctttttc caaagacaga ccgacttctt cggaaatcac cacgccgccg
      961 gtcaggatgg cgatgtcttg caacatcgct ttgcggcggt cgccgaagcc aggggctttg
     1021 acggcaacgg ttttcaggat gcctcggatg ttgttcacga ccaaagtcgc caaggcttcg
     1081 ccttctacgt cttcagcgat aatcaacagc ggacggctgg ctttcgccac ttgttccaaa
     1141 acaggcagca agtcgcggat gttgctgatt tttttgtcga acaacaatac aaacggattg
     1201 tccaaagcag cgatttgttt ttcagcgtcg ttgatgaagt aaggagacaa gtagccgcgg
     1261 tcgaactgca taccttcaac cacgtccagc tcgttttcca aagatttgcc gtcttcaacg
     1321 gtaatcacgc cttctttgcc gactttttcc atcgcttcgg cgataatcgc gccgacttgt
     1381 tcgtcagagt tggcggaaat cgagccgact tgggcgattt ctttggaagt gtcgcaaggt
     1441 ttggcgatgt tttttagctc ttcaaccaaa gcggcaacgg ctttgtcgat accgcgtttc
     1501 aggtcggtcg ggttcatacc ggcggtaacg tatttcatac cttcggcaac gatggattgc
     1561 gccaatacgg tggcggtagt cgtaccgtcg cctgccacgt cgttggtttt ggacgcgact
     1621 tctttcacca tttgcgcgcc catattttca aacttgtctt tcagttcgat ttctttggcg
     1681 acggttacgc cgtctttggt gatgtgcggg ccgccgaaag cgcggtcaac gactacgttg
     1741 cggcctttgg ggcccaaggt tacgcgcacg gcgtttgcca aaatgttcac gccgtttacc
     1801 attttttggc ggacttcatt gccgaactgt acgtcttttg ctgccatttc aattctccaa
     1861 aaatcattaa aactgtctga taaaaccgtt tatgccgtct gaaggcggtt tgccgtttca
     1921 gacggcatcg tgtccgtatt tatttttcaa cgatgccgaa aatatcttct tcacgcatta
     1981 ccaacagctc ttcgccgtcg gctttgacgg tttggccgct gtatttgccg aaaatgattt
     2041 tgtcgccgac tttgacatcc agcggacggc gcgcgccgtc tttgccgatt ttgcccgcgc
     2101 ccacggcgat gacttcgccc atatcgggtt tttcggcggc cgcacccggc aaaacgatgc
     2161 ccgatgcggt tttctcttca gcttccaagc gtttgacgac aacgcggtcg tgtaaaggac
     2221 ggatggtcat atttatgctc cgataaaatg atttgaaaac aatcatctgc ccgaacggtt
     2281 cggacagatt gaagtggaaa ccgggctgcc gcctgccggc ccgcccgtat aagtcggcaa
     2341 aattagggtg tgtgcgggca aattcaagtg aggcggaaaa aatttatttc cgccgttttt
     2401 tatagtggac taaatttaag gggctgtact agattagcag atatgttacc ctcgaaatat
     2461 gaagataacg cactgcaaat taaagaaaaa agtacagaaa gaactgctcc gtttttttgt
     2521 actggaagtt accgcccgtt ctgccgccga tattttgggt atccatccca attcggcagt
     2581 actgttctac cgtaaaatcc gcacggttat caaccatcat ttggccttgg ctgccgatga
     2641 ggtttttgag ggccctgtcg agccggacga aagcgatttc ggcggacggc gtaaaggcag
     2701 acgtggtcgc ggtgcggcag gaaaagtggt tgtcttcggc attctgaaac gcaacggacg
     2761 ggtctatacc gttgtggtgg ataatgccaa gtctgaaacg ttactccctg tcatcaagaa
     2821 gaaaatcatg ccggacagca ttgtttatac cgatagtctg agcagctgcg acaagttgga
     2881 cgtgagcggt tttatccatt accgcatcaa ccattccaag gagtttgcag accgtcagaa
     2941 ccacattaac ggcattgaga acttttggaa tcaggcaaaa cgcgtcttgc gaaaataca
//
LOCUS       DAXIFS010000199         2985 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.199, whole genome shotgun sequence.
ACCESSION   DAXIFS010000199 DAXIFS010000000
VERSION     DAXIFS010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.199"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..285)
                     /locus_tag="ACFOCA_001828"
     CDS             complement(<1..285)
                     /locus_tag="ACFOCA_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFC6988489.1"
                     /translation="MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIR
                     EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERA"
     gene            405..1448
                     /gene="pilT"
                     /locus_tag="ACFOCA_001829"
     CDS             405..1448
                     /gene="pilT"
                     /locus_tag="ACFOCA_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HFC6988490.1"
                     /translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
                     EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNTGRGPAAVFRTIPST
                     VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
                     PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
                     ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
                     RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
                     ARRRAQNSESMSF"
     gene            1611..2837
                     /locus_tag="ACFOCA_001830"
     CDS             1611..2837
                     /locus_tag="ACFOCA_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6988491.1"
                     /translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
                     TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
                     GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
                     LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
                     INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
                     LNFYPKEQHNQILIDIALNLTGIICQRLAPKQDKTGRTAVVDLLINTPAIQDFILKGD
                     LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
                     TPELLYDRVNGLNLIS"
BASE COUNT          806 a          967 c          682 g          530 t
ORIGIN      
        1 cgcgcgttcg gcgacaaact tggttttgtt ggactgcaca tcgccgatga cgtgccacac
       61 gatgtcggtc aaatccgcca actcttccgt tttgccgtac cactcctgaa tatagttctc
      121 gccgaaatca cgctgtccgg cggcgtaaac ttcgcggatg ccgtctgaag ggaaagtctt
      181 accgacggca atcaggctga cggaatgcgg cttccttccc gcctgcagaa ccaattttcc
      241 aatacggtcg gacacctccc gataacgttc ttgcaacacc gtcatagatt atcccctaat
      301 taaaaatgat taaacagttg aaacccctcc agtcagggcg gtacaatcaa ggttgttaga
      361 accattccaa ccaatcgaaa cattatacta aacagagccg cattatgcag attaccgact
      421 tactcgcctt cggcgctaaa aacaaagcat ccgaccttca cctgagttcg ggcatatccc
      481 ctatgattcg ggttcacggc gatatgcggc gcatcaacct tcccgaaatg agcgcggaag
      541 aggtcggtaa tatggtaact tcggtgatga acgaccacca gcggaaaatc taccagcaaa
      601 acttggaagt cgacttctcg ttcgaactgc ccaacgtcgc ccgattccgc gtcaacgcct
      661 tcaacaccgg ccgcggtccc gccgccgtat tccgcaccat tcccagcacc gtcttatcgc
      721 tggaagaatt gaaagccccg agcattttcc aaaaaatcgc agaatcgccg cgcggcatgg
      781 tattggttac cggccctacc ggttcgggca aatcgaccac gcttgccgcg atgatcaact
      841 acatcaacga aacccagccg gcacacatcc tgaccatcga agacccgatc gaattcgtcc
      901 accaaagcaa aaaatccctg attaaccagc gcgagctgca ccagcacacc ctcagcttcg
      961 ccaacgcgct gcgttccgca ttgcgcgaag accccgacgt tatccttgtc ggcgagatgc
     1021 gcgacccaga aaccattggc ttggcactga ccgccgccga aaccggacac ttggttttcg
     1081 gcacgctgca cacgaccggc gcagcaaaaa ccgtcgaccg tattgtggac gtattcccgg
     1141 cgggagaaaa agaaatggtg cgctctatgc tgtccgaatc gctgaccgcc gtcatctccc
     1201 aaaacctgct gaaaacgcac gacggcaacg gccgtgtcgc ctcgcacgaa atcctgattg
     1261 ccaaccccgc cgtccgcaac ctcatccgcg aaaacaaaat cacgcagatt aactccgtcc
     1321 tgcaaaccgg gcaggcgagc ggtatgcaga caatggacca atcgctgcaa tcgctggtgc
     1381 gccaagggct gatcgcaccg gaagtcgcac gcagacgcgc gcaaaacagc gaaagtatga
     1441 gtttctgaca cacaaccgcc ttccggccat accggcggga aaacaaggcg caaacacgcg
     1501 aggcgggacg cagcatcccg cccggctacc tttccgaaca agaagcgtcc gccttcctgt
     1561 tgaaacctgc cgccgcaaac tgcaaggctt aaaccgaaaa gaagctaacg atgaataccg
     1621 ataacctgca cgacatcttg gacgaaatgg ttcaagtgta ttctcaaaaa aaacaaagcc
     1681 gatccgaaac cccggccgaa atcggcgcac acttccaccc gctgctcgac cgcctgtgcg
     1741 aaaccgcaga agcacaaaac gcgtccgaca tccttatcag caaaggattc ccgccctcgt
     1801 tgaaaatcaa cagcgcatta accccgcagc cgcaaaaggc gctgacgggc gaggaaaccg
     1861 ccgccatcgc cgcatcgacg atgaacgccg aacaatcgga aatattccgg cgcgacggcg
     1921 aaatcaacta ctccgtccag tcgcgcagcg gcacgcgcta ccgcgccaac gcctaccaca
     1981 gccaaggcag cgcaggtttg gttttgcggc gcatcaacca cgtcatcccg caaatgcagg
     2041 aattgggcct gcccgaaaaa ctcaaagacc tcgccgtcgc accgcgcggg ctgctgatta
     2101 tcgtcgggcc taccggttcg ggcaaatcca ccacgatggc gactatgctc gaacaccgca
     2161 acaaaaccct gcccagccat atcgttacca tcgaagaccc gattgaattt atctacaaac
     2221 cgcgccgctg catctttacc cagcgcgaaa tcggcgtcga caccataaac tggcagacgg
     2281 cggtacaaaa cgctatgcgc cagtcccccg acgtggtctg catcggcgaa gtccgcagca
     2341 gggaaagtat ggaatacgcg atgcagctcg cccaaaccgg ccacctgtgc atttttacgc
     2401 tccacgccaa caccgcgccg cagtcgctcg aacgcatact caacttctac cccaaagaac
     2461 agcacaacca aatactgatc gacatcgccc tcaacctgac cggcatcatc tgccaacgcc
     2521 tcgcccccaa acaagacaaa acgggcagga cggcggttgt cgacttgctc atcaacacgc
     2581 ccgccatcca agacttcatc ctgaagggcg acctgatgaa catcagtaaa atcatggaaa
     2641 ccgccaaaac cgacggaatg cagacgatgg atcaaaacct tttcgaactg taccgtcacg
     2701 gcatcatcag ttacgaagaa gccctgcgcc agtccgtttc cgccaacaac ctgcgattgc
     2761 acatccaact gcacaaagaa ggcaaaacgc ccgaactcct ttacgacagg gtcaacggtc
     2821 tcaacctcat ttcctgatcc gcaaaaccca atgccgtctg aaaaccgcat ccccgttttc
     2881 agacggcatg attttatccg ccccattcat gtgctacact ttatagtgga ttaaatttat
     2941 agtggattaa caaaaatcag gacaaggcga cgaagccgca gacag
//
LOCUS       DAXIFS010000200         2963 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.200, whole genome shotgun sequence.
ACCESSION   DAXIFS010000200 DAXIFS010000000
VERSION     DAXIFS010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.200"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..635
                     /gene="lst"
                     /locus_tag="ACFOCA_001831"
     CDS             <1..635
                     /gene="lst"
                     /locus_tag="ACFOCA_001831"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HFC6988492.1"
                     /translation="TFDDGTGNLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTR
                     NASDEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKTGDETGGTVRILLGSPDKEMKE
                     ISEKAAKDFNIQYVAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFF
                     SGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKN"
     gene            complement(800..1258)
                     /locus_tag="ACFOCA_001832"
     CDS             complement(800..1258)
                     /locus_tag="ACFOCA_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6988493.1"
                     /translation="MKTQISLAAAAITLLLSACGGSGIPSQPKGEISENRTAAFKSMM
                     PDFSRMGKMVKGEEPYDVEKFKQAAAAFADSSKKPFTLFESDPQGNGRALPAVWSDGA
                     KFEAEKTKFAAAVEKLNAAAQTGKLDEIKAAYGETGASCKSCHDSFRAPE"
     gene            1377..2198
                     /locus_tag="ACFOCA_001833"
     CDS             1377..2198
                     /locus_tag="ACFOCA_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6988494.1"
                     /translation="MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADEL
                     GALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETM
                     IQTNVLGLTFLTRKILPNMVARGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
                     LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALW
                     LYRRPAHMNVNTIEIMPVAQTFAGMKVIKKAVPEVREDFEKQSMSLFSRIRSWFK"
     gene            complement(2249..2695)
                     /gene="yciA"
                     /locus_tag="ACFOCA_001834"
     CDS             complement(2249..2695)
                     /gene="yciA"
                     /locus_tag="ACFOCA_001834"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HFC6988495.1"
                     /translation="MQHEEGNRQRPQGELLLRTVAMPRDTNPNQDIFGGWIMSQMDLG
                     GGILAAEIAQGRIVTVAVQEMNFIRPVKVGNVVCCYGHCVRVGNTSLQLKVEVWVKTL
                     MNDCVTEDRHLVTEAVFTYVAIDAEGNPRPIPKEGNPILAGLLPTP"
BASE COUNT          686 a          669 c          862 g          746 t
ORIGIN      
        1 aaacctttga cgacgggaca ggcaatttaa ttcaaagcag cagctatttg ggcgatgagt
       61 tttctgtaaa cgggacgatc aagcggaatt ttgcccggat gatgatcgga gattggagca
      121 tcgccaaaac ccgcaatgct tccgacgagc attacacgat attcaagggt ttgaaaaaca
      181 ttatggacga cggccgccgc aagatgactt acctgccgct gttcgatgcg tccgaactga
      241 agacggggga cgaaacgggc ggcacggtgc ggatactttt gggttcaccc gacaaagaga
      301 tgaaggaaat ttcggaaaag gcggcaaaag atttcaacat acaatatgtc gcgccgcacc
      361 cccgccaaac ctacgggctt tccggcgtaa ccacattaaa ttcgccctat gtcatcgaag
      421 actatatttt gcgcgaaatt aagaaaaacc cgcatacgag gtatgaaatt tatacctttt
      481 tcagcggcgc ggcgttgacg atgaaggatt ttcccaatgt gcacgtttac gcattgaaac
      541 cggcttccct tccagaagat tattggctca agccggtgta tgccctgttt acccaatccg
      601 gcatcccgat tttgacattt gacgataaaa attaatcgca tagcaaatca aaatagaaaa
      661 tggcggagtg cgtggggtaa aaataaggat agcgtttttt catttggatt gacgataatt
      721 tctgattgct ttgcgtgtgc tgaaatggca aagaaaatgc cgtctgaagt cttcagacgg
      781 cattgttttg ttttggatgt tattcgggcg cgcggaagct gtcgtggcag gatttgcagc
      841 ttgcgccggt ttcgccgtag gcggctttga tttcgtccag tttgccggtt tgggcggcgg
      901 cgttgagttt ttcgacggcg gcggcgaatt ttgttttttc ggcttcaaat tttgcaccat
      961 ccgaccaaac ggcgggcagt gcgcgcccgt tgccttgcgg gtcggactca aaaagcgtaa
     1021 acggtttttt gctgctgtcg gcaaacgccg ctgccgcctg tttgaatttt tcgacatcgt
     1081 aaggttcttc gcctttgacc attttgccca tacgcgagaa gtcgggcatc atagatttga
     1141 acgcggcggt gcggttttcg gaaatttcgc ctttgggttg ggaaggtatt ccgctgcctc
     1201 cgcaggcgga aaggagcagt gtgatggcgg cagcagcaag gctgatttgg gttttcatat
     1261 tgaatgtgtc ctgtcgtggt ggtatggttg ttgtcatttt cagccggcgc gatgccgtct
     1321 gaagggtatt atgatacctg aaacaggttt gggaaacgag aaagaaagga aaaacaatgg
     1381 ctgttttaat taccggtgct tcggcaggat tcggcgaagc gatgtgccgc gcgtttgtcg
     1441 gggcgggata ccgcgttatc ggtgcggcgc gtcgtgcgga caggcttcag gccttggcgg
     1501 atgaattggg tgctttgttt taccctttgg aaatggacgt gtcgcgccgc gagtcggtgg
     1561 aaaacgcctt aaacggcatc cctgatgaat tttccgacat cgactgcctc atcaacaatg
     1621 ccgggctggc tttgggtctg gacacggcgg acaaggcgga ttttgaagat tgggaaacaa
     1681 tgattcaaac caatgttttg ggtttgacgt ttctaacgcg caagattttg ccgaatatgg
     1741 tggctcgggg cggcggttat gtgatgaatt tgggttcgat tgcaggcaat tatgcttatg
     1801 ccggcagcaa cgtttacggg gcgaccaagg cgtttgtgcg ccagttcagc ctgaatttgc
     1861 gcgcggagtt ggcggataag aacatccgcg ttaccaatat cgagccgggt ttgtgcggca
     1921 atacggagtt ttccaacgtg cgcttcaaag gcgatgacga gaaggcagca ggcgtgtatg
     1981 agggtgtgga atttatccgc cccgaagata ttgcggaaac cgcattgtgg ctgtaccgcc
     2041 ggccggcgca tatgaatgtg aacacgattg aaattatgcc cgtggcgcag acttttgcag
     2101 gaatgaaggt gataaaaaaa gccgtgccgg aagtgcggga agactttgaa aaacagagta
     2161 tgtcgctgtt ttcccgcatc agatcttggt tcaaatgatg cggaatgccg tctgaagaca
     2221 gtttcagacg gcatttttac gggcattttt acggagtagg caataagccc gccaatatgg
     2281 ggttgccttc tttcggaatc gggcgcggat tgccttccgc atcgatggcg acataagtga
     2341 acacggcttc ggttacgagg tggcggtctt cggtaacgca atcgttcatc aaagttttca
     2401 cccagacttc gactttaagc tggagggaag tattgcccac gcggacgcaa tgcccgtagc
     2461 agcagacgac gttgccgacc ttgaccgggc ggatgaagtt catttcctga acggcgacgg
     2521 taacgatgcg tccttgtgcg atttccgctg ccaatatgcc gccgcccaaa tccatctgcg
     2581 acataatcca gccgccgaaa atgtcttggt tgggattggt atcgcgcggc atagcgacgg
     2641 tacgcaggag cagttcgcct tgagggcgtt ggcggttgcc ttcttcgtgc tgcataaagt
     2701 ttccttgttt tattgaaaga taaatcgaac ctgcacccct gcccgaaacg ggaagtcggg
     2761 aagtgcgtag tttaacccat ttgagacata caagggcggg cgtgggacag attcgcaagg
     2821 cgtattgtag ggcggggctg tagagtgggc ttcagtccgc caatcccgcc aaatcctacc
     2881 ctaagcaact gaaccgtcat tcccacgaaa gtgggaatct agaatctcgg gggttcagtc
     2941 atttccgata gattcccgcc gcg
//
LOCUS       DAXIFS010000201         2864 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.201, whole genome shotgun sequence.
ACCESSION   DAXIFS010000201 DAXIFS010000000
VERSION     DAXIFS010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.201"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..333
                     /locus_tag="ACFOCA_001835"
     CDS             <1..333
                     /locus_tag="ACFOCA_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFC6988496.1"
                     /translation="DASGLGEKIKDGKKTVLSREEEQKICNTFTHKQAVEDFSVVIGY
                     DEIKAKNHSLSAGQYFEVKIDYVDISADEFAQKMAGFSADLDKLFAESAELEKEIKDR
                     LAMLKFNS"
     gene            365..481
                     /locus_tag="ACFOCA_001836"
     CDS             365..481
                     /locus_tag="ACFOCA_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6988497.1"
                     /translation="MPSESLSDGILFGLENTYAVLSLKERIQKTKATGIYRK"
     gene            complement(641..1978)
                     /gene="ribBA"
                     /locus_tag="ACFOCA_001837"
     CDS             complement(641..1978)
                     /gene="ribBA"
                     /locus_tag="ACFOCA_001837"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HFC6988498.1"
                     /translation="MTDTAGLRRRNLRQWIAEHYGGLQTRFAEAVALNTGELSALLKN
                     KSFGEKKARKIEQAAKMPAFWLDTEHTARPSEHTGKHTMSHISPIPEILADIKAGKMV
                     IITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKN
                     GAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKG
                     GVLVRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPELMKFAEEHNLKIGTIA
                     DLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGTPAADTETLV
                     RVHEPFSVMDFIQANPRHSWSLPKALERIQQAESGVVILLHRTEDGASLLDRTLPKGA
                     NQAYKWDSKSYGIGAQILVGLNVKKLRVLGQPSSFTGLTGFGLEVVGFEEAEK"
     gene            complement(2192..>2864)
                     /locus_tag="ACFOCA_001838"
     CDS             complement(2192..>2864)
                     /locus_tag="ACFOCA_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HFC6988499.1"
                     /translation="DKKVDLILHPSSFNYRDIPKGADFSDNDFVRHFETLVEGRYYIA
                     NAWTKIVRREIIIKNNLFFPKGYIHEDFPYSLQLARFIKTFAFYDNPFYQYRVLGGSI
                     SHNIKYKNFSDVLTHLDRGVDFLVENKNSPIYGGLQKFVFDNIGYLRSILVRLYFSKN
                     IIVIYRKYFSFKEKCRKIFGAKAIRPVFIGKTAFIIGLPILRLLVPPMLYPAIKAVYQ
                     KFFSE"
BASE COUNT          687 a          622 c          813 g          742 t
ORIGIN      
        1 gacgcatcgg gcttgggcga aaaaattaaa gacggcaaaa aaaccgtact ttctcgcgaa
       61 gaagaacaaa aaatctgcaa taccttcacg cacaaacagg cagtggaaga tttcagtgtg
      121 gtaatcggct acgatgaaat caaagcgaag aatcacagct tgtcggcggg gcagtatttc
      181 gaggtaaaga ttgattatgt ggatatttcc gccgacgaat ttgcgcaaaa aatggcggga
      241 ttttcagcgg atttggataa acttttcgcc gaatctgccg aattggaaaa agagattaag
      301 gatagattgg cgatgttgaa attcaattca taaataccga tgaatgaaac cggtcaaact
      361 taaaatgccg tctgaaagcc tttcagacgg cattttgttt ggtttggaaa atacttatgc
      421 cgttctttcc ctgaaagaga gaatccaaaa aaccaaagcc acaggaattt atcggaaatg
      481 acaaaaaccc gacgaaccgg attcccgcca gcgcgggaat gacgaattag aagttacccg
      541 aaatttgaaa aaacaaaatc caacccaaca gaccgggttt tcgtttgcac ggaaataatg
      601 caataaataa agcaaatata aagtatttga atttactata ttatttttcc gcttcttcaa
      661 agccgacgac ttccaaaccg aagccggtca gaccggtgaa agatgagggc tgcccgagga
      721 cgcgcagttt tttgacgttg aggccgacga ggatttgtgc gccgatgccg tagcttttgc
      781 tgtcccattt gtaggcttgg tttgcgcctt taggcagggt gcggtcgagc agggatgcgc
      841 cgtcttcggt gcggtgcaga aggatgacga cgccgctttc ggcttgttgg atgcgctcaa
      901 gggctttggg cagcgaccat gaatggcgcg ggttggcttg aatgaagtcc atcacactga
      961 agggttcgtg gacgcggacg agggtttcgg tgtcggcggc gggcgtgcct ttgacgaggg
     1021 cgaggtgggt ttcgccggag agtttgtcga cgtaaacgtg ttgttggaac tcgccccacg
     1081 gggtttgtac aggcgcattg cccatgtctt cgagcaggct ttcggtacgg ctgcggtatt
     1141 cgatgaggtc ggcaatggtg ccgattttaa ggttgtgttc ttcggcaaac ttcatcagct
     1201 cgggcatacg cgccatggtg ccgtcgtcgt tgatgatttc acagatgacg gaggcaggaa
     1261 tcagcccgtt catttgcgcc aggtcgacgc cggcttcggt gtgtccggcg cggacgagta
     1321 cgccgccttt ttgggcgcga agcggaaaga tatgaccggg ttggacgatg tcttcgggtt
     1381 tagcggtcgg ggaaacggcg gtttgaatag tcagggcgcg gtcggcggcg gaaatgccgg
     1441 tggtaatgcc gtgtgcggct tcgatggaga cagtaaagtt ggtgccgtat tgcgcgccgt
     1501 ttttttgggt catcatcggc agcccgagtt tttcgaccat ttcgccgtcc atcggcaggc
     1561 agaccaagcc gcgcgcgtgt ttgatcatga agttgatggc ttcgggcgtg acgaattgcg
     1621 ccgccatcag caggtcgcct tcgttttctc ggtcttcggc atcggtgatg atgaccattt
     1681 tgccggcttt gatgtcggct aggatttcgg ggatggggga gatatgggac atggtgtgtt
     1741 ttcctgtgtg ttcggacggg cgggcggtgt gttcggtatc gagccaaaag gcgggcattt
     1801 ttgccgcctg ttcgatttta cgggcttttt tctcgccgaa ggatttgttt ttcaaaaggg
     1861 cggagagttc gcctgtgttg agggcaacgg cttcagcaaa acgagtttgc aaaccgccgt
     1921 agtgttctgc tatccattgc cgcaggttgc ggcggcgcag accggctgtg tcggtcatcg
     1981 tttcatcctt tgtagaaatc ggatgtagcg gattgtaatc gcgtatttac caaaaagcaa
     2041 atctgttttt tcgctaaacc gaattatttg ctttttggta aacagatgcc gtctgaagcc
     2101 ggattcgtgg cttcagacgg cattgccgca accccgccgg cggggcggct gtttcttccc
     2161 gcccgcttcc gattcggggt ttgccggaag cttattccga aaaaaatttt tgataaacgg
     2221 ccttgattgc cgggtacagc ataggcggta cgagcaggcg caatatcggc aatcctatga
     2281 tgaatgcggt cttcccgata aaaaccggac ggattgcctt cgcgccgaat atctttctgc
     2341 atttttcttt aaatgaaaaa tatttccggt agatgacgat aatgtttttg gaaaaataaa
     2401 gccttaccaa tatagacctc agatagccga tattgtcgaa gacaaatttt tgcaaaccgc
     2461 cgtagatggg ggaatttttg ttttcgacta aaaaatccac accccggtcg agatgcgtca
     2521 gcacatcgct gaaatttttg tatttgatgt tgtggctgat agagccgccg agaacgcggt
     2581 actggtaaaa agggttatcg taaaaggcaa aagtcttgat aaaacgcgcc aattgcaaac
     2641 tgtacgggaa atcctcgtga atgtatcctt ttgggaaaaa cagattgttt ttgatgatga
     2701 tttcccgcct gacaatcttt gtccacgcgt tggcgatata gtaccgcccc tccaccagcg
     2761 tttcaaaatg gcggacaaaa tcattatccg aaaagtccgc ccctttgggg atgtcgcggt
     2821 aattgaagga cgagggatgc aggatcaaat caaccttttt gtct
//
LOCUS       DAXIFS010000202         2852 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.202, whole genome shotgun sequence.
ACCESSION   DAXIFS010000202 DAXIFS010000000
VERSION     DAXIFS010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.202"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            165..986
                     /locus_tag="ACFOCA_001839"
     CDS             165..986
                     /locus_tag="ACFOCA_001839"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HFC6988500.1"
                     /translation="MSSPRHVFYISDRTGLTAENIGEALLNQFGNLSFKRHTHPFVDT
                     PEKARAVVEKVNRSRQENGQRPIAFVSVVDDEIRRIIKGADAFQINFFETFLGLLEKE
                     LNTEATASEQGHHSIGNTKRYDARMEAVNFSLNHDDGVSDKNLQEADVILMGVSRSGK
                     TPTCLYLALQYGIRAANYPLIPDDLESADLPRMVKPYRDKLFGLTIQPERLQAIRQER
                     RPNSTYAKIDTCRSEVADAQSMFRRHGIPFANTTDKSVEELAVHILQACKLKRRF"
     gene            complement(1226..1888)
                     /locus_tag="ACFOCA_001840"
     CDS             complement(1226..1888)
                     /locus_tag="ACFOCA_001840"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6988501.1"
                     /translation="MIHAVLFDLDGTLADTALDLGGALNTLLARHGLPPKSMDEIRNQ
                     ASHGAAGLLKLGTGITPDHPDYARWRTEYLDEYDSRYAQDTTLFGGVNELIAELDRRG
                     IKWGIITNKPMRFTDKLAPKLGFIIPPAVVVSGDTCGEPKPSIKPMLYACGQIHADPQ
                     HTLYVGDAERDIQAGRNAGMKTVLAEWGYIAPEDDTGSWQADFHIRTPLDLLECLDKI
                     QP"
     gene            complement(1901..2728)
                     /locus_tag="ACFOCA_001841"
     CDS             complement(1901..2728)
                     /locus_tag="ACFOCA_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFC6988502.1"
                     /translation="MKLDIYALLERALLSGDPDEKGRLTDEAFAAVQNMDGAETNTPP
                     LDFPRAGRPDKPVLVAPSQLTPRKMNTAEGYAAMLHAIAHIEFNAVNLALDAAYRFRT
                     LPFQFVRDWVKVAKEEVYHFRLMRDRLRAFGFDYGSFEAHNHLWDMAYKTAYDPLLRM
                     ALVPRVLEARGLDVTPGIRAKVAQRGDSETCGVLDIIYRDEVGHVAIGNHWYQHLCRE
                     RGLEPITLFRSLIARYDMFIFRGYVNIEAREKAGFSRFELDMLEDFEQGLKQNKNTV"
BASE COUNT          614 a          694 c          842 g          702 t
ORIGIN      
        1 ttttaaaatt ttctgccaaa aaatacttta tataaataat tttatttcaa aattatattg
       61 tgtctgtttg ggtgtaatcc gaggtaggtg tgctgcgagt gctttccttg tgtctgccgc
      121 tgctgttatg atgggatttt aaacctgtgt tttaaggatg gaagatgagc agtccgcgcc
      181 atgtgtttta catttccgac cgtaccggtc tgactgccga gaatatcggc gaggctttgc
      241 tgaaccagtt tggcaatctg tcgttcaaac gccatacgca tccgtttgtc gatacgccgg
      301 aaaaggcgcg cgcggtggtg gagaaggtca atcggagccg gcaggaaaac ggtcagcgtc
      361 cgattgcgtt tgtcagtgtg gttgatgacg aaatccgtcg gattatcaaa ggggcggatg
      421 cttttcagat taatttcttt gagacttttt tgggactgtt ggagaaagaa ctcaataccg
      481 aagccacggc atccgagcag gggcatcaca gtatcggtaa tacgaagcgt tacgatgcgc
      541 gtatggaggc ggtgaatttc tcattgaacc acgatgacgg ggtcagcgat aagaaccttc
      601 aggaagcgga tgtaatcttg atgggtgtat cgcgttcggg caaaacgccg acctgccttt
      661 acctcgccct gcaatacggc atccgtgcgg caaactatcc gctgattccc gacgatttgg
      721 aatcggccga tctgccgcgt atggtcaagc cttataggga taagctgttc gggttgacca
      781 tccagccgga acgtttgcag gccatccgcc aagagcgccg cccgaattca acttatgcca
      841 aaatcgatac atgccgcagc gaggtggcgg acgcgcagag tatgttcaga cggcatggga
      901 ttccgtttgc gaatacgacg gataaatcag tggaagagct tgccgtacac atccttcagg
      961 cgtgcaagct caaacgcagg ttttgacggg ttttgattcg gtttgaaggt ggaactgccg
     1021 tctgaaatca ggtttcagac ggcagtttta tagtggatta acaaaaatca ggacaaggcg
     1081 acgaagccgc agacagtaca aatagtacgg agccgattca cttggtgctt cagcacctta
     1141 gagaatcgtt ctctttgagc taaggcgagg caacgacgta ctggtttaga tttaatccac
     1201 tatatgtttg tggggcggat atttttcagg gctgtatttt gtccagacat tcgagcagat
     1261 cgagcggcgt gcggatgtgg aaatccgcct gccatgagcc ggtatcgtct tcgggagcga
     1321 tgtagcccca ttcggcgagg acggttttca tgccggcgtt gcggcctgct tggatgtcgc
     1381 gttcggcatc gccgacgtag agtgtgtgtt gcgggtcggc gtggatttgt ccgcacgcat
     1441 acagcatggg tttgatgctg ggcttgggtt cgccgcaggt gtcgccgctg acgacgacgg
     1501 cgggtgggat gatgaagccg agtttggggg cgagtttgtc ggtgaagcgc atgggtttgt
     1561 tggtgatgat gccccatttg atgccgcgtc tgtcgagttc ggcgatgagt tcgtttacgc
     1621 cgccgaagag ggtggtgtct tgggcgtagc ggctgtcgta ttcgtcaagg tattcggtgc
     1681 gccatcgggc atagtcgggg tggtcggggg tgatgcctgt gccgagcttg agcagtcctg
     1741 ctgcgccgtg gctggcttgg ttgcggattt cgtccatgct tttgggcggc agtccgtggc
     1801 gggcgagcag ggtattgagt gcgccgccga ggtctagggc ggtgtcggca agcgtgccgt
     1861 cgaggtcgaa gagtacggcg tgtatcatgt atgttccttt tcagacggta tttttgttct
     1921 gtttcaaacc ctgctcgaaa tcttccagca tatccaattc aaagcggctg aagcccgctt
     1981 tttcgcgcgc ttcgatgttc acatagccgc ggaagataaa catatcgtaa cgggcaatca
     2041 gactgcggaa cagggtaatc ggttccaaac cgcgttcgcg gcagaggtgt tgataccaat
     2101 ggttgccgat ggcgacatga cccacttcgt cgcggtaaat gatgtccaat acgccgcagg
     2161 tttccgaatc gccgcgctgc gccaccttcg cgcgtatccc cggcgtaacg tccagcccgc
     2221 gcgcttccaa cacgcgcggt accaacgcca tacgcaacag cgggtcgtag gcggttttgt
     2281 acgccatatc ccacaaatgg ttgtgcgcct cgaaactgcc gtaatcgaag ccgaaagcgc
     2341 gcaatctgtc gcgcatcagg cggaaatggt acacctcttc cttcgccact ttcacccagt
     2401 cgcggacaaa ctgaaacggc agcgtgcgga aacggtatgc cgcgtccaaa gctagattga
     2461 cggcgttgaa ttcgatatgc gcaatcgcgt gcagcatcgc cgcatagcct tctgccgtgt
     2521 tcattttgcg cggggtcagt tgtgacggcg cgaccaaaac cggcttgtcc ggccgccctg
     2581 cgcgggggaa atccagcggc ggcgtgtttg tttcagcacc gtccatgttc tgaacggcgg
     2641 caaacgcctc atccgtcagc cgtccttttt catctgggtc gcccgaaagc agggcgcgtt
     2701 ccagcaaagc ataaatatcg agtttcatct caagtccgcc gtgttcggaa aacaaatatt
     2761 atagcgtttt aaaaaaacaa gatgaggcat ataatctccg cgattcggca ttccgcgccc
     2821 aaaccgtcaa atatagtgga ttaacaaaaa cc
//
LOCUS       DAXIFS010000203         2798 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.203, whole genome shotgun sequence.
ACCESSION   DAXIFS010000203 DAXIFS010000000
VERSION     DAXIFS010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.203"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            192..1085
                     /locus_tag="ACFOCA_001842"
     CDS             192..1085
                     /locus_tag="ACFOCA_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HFC6988503.1"
                     /translation="MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVG
                     LALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEI
                     LGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVAFN
                     QGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISAR
                     PGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIQL
                     GEEAARAALPEIKRKLAAYRY"
     gene            1188..2291
                     /gene="prfB"
                     /locus_tag="ACFOCA_001843"
     CDS             1188..2291
                     /gene="prfB"
                     /locus_tag="ACFOCA_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFC6988504.1"
                     /translation="MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVIGLSE
                     DPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQ
                     EDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAER
                     KGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTS
                     FASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC
                     QNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSR
                     IKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV"
     gene            2370..2729
                     /gene="rnpB"
                     /locus_tag="ACFOCA_001844"
     ncRNA           2370..2729
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACFOCA_001844"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT          742 a          689 c          765 g          602 t
ORIGIN      
        1 acggcggtgt tgtgagataa ttcccacctt ggatagtatg ccttcaaata taatttccgt
       61 aaaggaaaaa aagaaatatt aattttgatg atgacttaac aaagcctcca tttgcttggc
      121 tgtcaaaggg ggttgttaag aaaagcaatc cctctttttg acggggtgcg atatataaag
      181 gaatggaaaa tatggtaacg ttttcaaaaa tcagaccgct tttggcaatc gccgccgccg
      241 cgttgcttgc cgcctgcggc acggcgggaa ataatgccgc ccgcaagccg gtgcaaaccg
      301 ccaaacccgc cgcagtggtc ggtttggcac tcggtggcgg cgcatctaaa ggatttgccc
      361 atgtaggtat tattaaggtt ttgaaagaaa acggtattcc tgtgaaggtg gttaccggca
      421 catcggcagg ttcgattgtc ggcagccttt ttgcatcggg tatgtcgccc gaccgcctcg
      481 aattggaagc cgaaatttta ggcaaaaccg atttagtcga tttaaccttg tccaccagtg
      541 gttttatcaa aggcgaaaag ctgcaaaatt acatcaaccg aaaagtcggc ggcaggcaga
      601 ttcagcagtt tcccatcaaa tttgccgctg ttgctactga ttttgaaacc ggcaaggccg
      661 tcgctttcaa tcaagggaat gccgggcagg ctgtgcgcgc ttccgccgcc attcccaatg
      721 tgttccaacc cgttatcatc ggcaggcata catatgttga cggcggtctg tcgcagcccg
      781 tgcccgtcag tgccgcccgg cggcaggggg cgaatttcgt gattgccgtc gatatttccg
      841 cccgtccggg caaaaacatc agccaaggct tcttctctta tctcgatcag acgctgaacg
      901 taatgagcgt ttccgcgttg caaaatgagt tggggcaggc ggatgtggtt atcaaaccgc
      961 aggttttgga tttgggtgca gtcggcggat tcgatcagaa aaaacgtgcc atccagttgg
     1021 gtgaggaggc agcacgtgcc gcattgcctg aaatcaaacg caaactggcg gcataccgtt
     1081 attgacgcta tgccgtccga acgtgtttct agaaggcttt atccatagaa aaaaataccc
     1141 gaatcccgta caatacgccc ctaaaatttt gaaagaacaa aagaatcatg gaagccgaag
     1201 taatcaacca gctcaacaat accctgaatg atttggaaaa gcgcagcgaa gacatccgag
     1261 tttatatgga ttatcagggt aagaaagacc gattggaaga agttatcggt ctttccgaag
     1321 accccgaact ttggaacgac ccgaaacgcg cccaagaaat cggcaaagag cgcaaaatcc
     1381 tcgaaggcat cgtgttgacg ctcgacaaca tcgcttcggg catcgaagac aaccgcatgc
     1441 tgattgaaat gaccgtcgaa gaaaacgacg aagaaggttt tgccgccgtg caggaagatg
     1501 tggcggggct ggaaaaacag atggcggatt tggagttcaa acggatgttc aaccagcccg
     1561 ccgacccgaa caactgcttt atcgacatca ccgcaggcgc gggcggtacg gaagcggaag
     1621 actgggcggg tatgctgttc cgcatgtaca gccgctacgc cgagcgcaaa ggcttcaaaa
     1681 tcgaaatcct cgaagaagac gacggcgaaa tcgcgggcat caaccgcgcg actatccgag
     1741 tggaaggcga atacgcctat ggtttgctgc gtaccgaaac tggcgttcac cgcttggtgc
     1801 gctattcacc gtttgactcg aacaacaaac gccatacttc gtttgcctcc gtgttcgttt
     1861 accctgaaat cgatgattcc atcgaaatcg aaatcaaccc cgccgatttg cgtatcgaca
     1921 cctatcgcgc atcgggcgcg ggcggtcagc acatcaacaa aaccgactcc gccgtgcgta
     1981 ttacccacga gccgacgggg attgtggtgc aatgtcaaaa cgaccgttcg caacacgcca
     2041 acaaagccgc cgcgatggaa atgttgaagt ccaaactgta tgaattggaa atgcgcaaac
     2101 gcaatgaaga gaaacaggcg ttggaagaag gtaaatccga tgtaggttgg ggtagccaaa
     2161 tccgttcgta tgttttggat tcctcacgta tcaaagactt gcgtacaggc tacgaagtcg
     2221 gcaacaccaa agccgtattg gatggcgatt tggacggctt tatcgaagcc agcctgaaac
     2281 agggcgtgta gtttaggctg tatgccgtct gaaacctgta ccgtttcaga cggcattttt
     2341 gcgtttcgtg ttataatccg cgccgcacac gggacgagca gacagtcgcc gcgtatcgcg
     2401 taaggcatac ggggaggaaa gtccgggctc cgcagggtag aatgccggtt aacggccggg
     2461 cgcggtaacg cgacggaaag tggaacagaa agcaaaaccg ccgatggctg ctttggcagc
     2521 acaggcaagg gtgaaaaggt gcggtaaggg cgcaccgcgc atttggtaac aatatgcggc
     2581 aggccaaacc ccattcggag caagaccaaa cagaacgcaa tgacgctgcc cgccgagcgt
     2641 tcgggtaggt tgcttgagca tactggtaac ggtatgccta gaggaatgac tgtccgagac
     2701 agaacccggc ttaccgcctg tccggtgtgc atccgacacg caaatgccgt ctgaaacctg
     2761 aaatatggtt cagacggcat ttttatttag gttgtgtt
//
LOCUS       DAXIFS010000204         2797 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.204, whole genome shotgun sequence.
ACCESSION   DAXIFS010000204 DAXIFS010000000
VERSION     DAXIFS010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.204"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            35..1252
                     /locus_tag="ACFOCA_001845"
     CDS             35..1252
                     /locus_tag="ACFOCA_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6988505.1"
                     /translation="MTHTASKTPKFWLTITAAAFILLITIGMRMTLGLFVQPVVNTTE
                     LSIAQFSLIIAVFQLMWGISQPLSGALADRFGAFRVLSGGAVLLVCACLIAPNIPTYW
                     GLMIAVGLLLAFGTGSGGFSIIMGQVAAQVPAHKRGLASGLVNAGGSAGQFLFAPLVQ
                     GLVVLPEVGWTGTFYVWGAIALLILPVSWWLAGGNNAAHTQHAQATHGQSLGEAVKTA
                     FKTPSYILLHLSFFACGFHIAFLVTHLPTEVALCGLPATVASTAIAIIGLANIAGCVF
                     SGWCTSRVRGKYVLFGLYASRAAMILIYIFSPKTDLNFYIFAAALGFTWLATVTPTAS
                     ITGKLFGTRYLATLFGLKMLSHQIGGFLGSYIGGIVITQFGDYGWMWYADALLAGTAA
                     LLNLPIREPRTAA"
     gene            1249..1380
                     /locus_tag="ACFOCA_001846"
     CDS             1249..1380
                     /locus_tag="ACFOCA_001846"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988506.1"
                     /translation="MKECRLKTLRRHFPNTPPVSGLHDTQISLIKPQTTAAIKPPFK"
     gene            complement(1455..1595)
                     /locus_tag="ACFOCA_001847"
     CDS             complement(1455..1595)
                     /locus_tag="ACFOCA_001847"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988507.1"
                     /translation="MNYRIGNAVCIDEMPDTGRGGQTFAKRTASDASPARAGAASDGI
                     LS"
     gene            1608..2738
                     /locus_tag="ACFOCA_001848"
     CDS             1608..2738
                     /locus_tag="ACFOCA_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6988508.1"
                     /translation="MKIVFITTVASSIYGFRAPVIKKLIGKNHQVYAFVSEFSDNELD
                     IIREMGVTPVTYRSNRSGLNPFSDIKSTFLIFKELKKISPDLVFPYFAKPVIFGTFAA
                     KLAGVPRIVGMLEGLGFAFTPQPEGIPLKTKIIKGILIALYRIALPMLESLIVLNPDD
                     KDELTDKYGIKIKNIHILGGIGLDLRQYPYSEADIPDEKEPVKFLFIGRFLKEKGIDD
                     FIRAAEQVKDKYPDTVFTALGAIDKSRAGGGDLERLAARDIIRFPGFVNNVSEVIKEH
                     HIFVLPSYYREGVPRSTQEAMAVGRAVITTDVPGCRETVADKVNGFLIEPWNPRILAE
                     KMIYFIENREAVRLMGNASYAIAKDKFDAEKVDLKLLDILKA"
BASE COUNT          664 a          833 c          662 g          638 t
ORIGIN      
        1 aatccgcaaa cttaaccgac tcaaaataca cattatgacg cacaccgcat cgaaaacacc
       61 caaattttgg ctgaccatca ccgccgccgc attcatcctg ctgattacca tcggcatgag
      121 gatgacgctc ggactgttcg tccaacccgt cgtcaacacc accgaattga gcattgccca
      181 attcagcctc atcatcgccg ttttccaact gatgtggggc atatcgcaac cattgtccgg
      241 cgcgcttgcc gaccgtttcg gcgcgttcag ggtattaagc ggcggcgccg tcctgctcgt
      301 ctgcgcctgc ctgattgccc ccaacatccc gacttattgg gggctgatga ttgccgtcgg
      361 gctgctgctc gcattcggca ccggttccgg cggtttctcc atcattatgg ggcaggtcgc
      421 cgcccaagtc cccgcacaca aacgcggctt ggcatccgga ctggtcaacg ccggcggttc
      481 ggcaggacaa ttcctgttcg caccgctggt tcaaggactc gtcgtcctgc ccgaagtcgg
      541 ctggacgggc acattttacg tttggggcgc aatcgccctg ctgattctgc ctgtctcatg
      601 gtggcttgcc ggcggcaaca acgccgccca cacccaacac gcccaagcca cacacggaca
      661 aagcctcgga gaagcagtca aaaccgcctt caaaacccca agctacatcc tgctgcacct
      721 aagctttttt gcctgcggct tccacatcgc ctttctcgta acccacctac ccacggaagt
      781 cgccctgtgc ggactgcccg ccaccgtcgc atccacagcc atcgccatca tcggactggc
      841 aaacatcgcc ggttgtgtgt tctcaggctg gtgcacaagc cgcgttcggg gcaaatacgt
      901 cctgttcgga ctgtacgcct cgcgcgccgc gatgatactc atctacattt tttcgcccaa
      961 gaccgacctc aacttctaca ttttcgccgc cgcactcgga tttacctggc tcgccaccgt
     1021 cacgccgacc gcctccatta ccggcaaact cttcggcaca cgctacctcg ccaccctgtt
     1081 cggactgaag atgctcagcc accaaatcgg cggattcctc ggctcgtaca tcggcggcat
     1141 cgtgattaca caattcggcg actacggctg gatgtggtac gccgacgcac tgctggcggg
     1201 aaccgccgcc ctcctcaacc tccccatccg cgaaccccga accgccgcat gaaagaatgc
     1261 cgtctgaaaa ccctcagacg gcattttcca aacaccccgc ccgtttccgg actgcacgac
     1321 acgcaaatca gccttatcaa accgcaaaca accgccgcga ttaaaccgcc attcaaataa
     1381 gtccgttttc ccttcgggtg taaaatcatc acaaaacgcg atactgtata tcgccgggcg
     1441 ttatgcagcg gatttcagga taaaatgccg tctgaagccg cccctgcccg ggcgggcgaa
     1501 gcgtcggatg cggtgcgctt ggcaaaggtt tgcccgccgc gccccgtatc cggcatttca
     1561 tcaatgcaga ccgcatttcc aatcctataa ttcaaggtgt ccgccttatg aaaatcgttt
     1621 ttatcacaac agtcgcatcc agcatttacg gtttccgcgc ccccgtcatt aaaaaattaa
     1681 tcggcaaaaa ccatcaggtg tatgcctttg tatcggagtt ttccgataat gaattggata
     1741 ttatcaggga aatgggggtt acacccgtta cctaccgttc aaaccgcagc gggctgaacc
     1801 cgttttccga tataaaatcc accttcctca tatttaaaga actcaaaaaa atatcgccgg
     1861 atttggtttt cccttatttc gcaaaacccg tgattttcgg cacttttgcc gcaaaactgg
     1921 caggcgtgcc cagaatcgtc gggatgctgg aaggtttggg attcgcattt accccgcaac
     1981 cggaaggcat accgttaaaa acaaaaatca taaaggggat tttgattgcc ttgtaccgca
     2041 ttgccctgcc gatgttggaa agcctgattg tattaaaccc cgacgacaaa gacgaactga
     2101 cggacaaata cggcatcaaa ataaaaaaca tccatatttt gggcggaatc ggtctggatt
     2161 tgcggcaata tccttattcc gaggcggata ttcccgatga aaaagaaccc gtaaaattcc
     2221 tctttatcgg cagatttctg aaagaaaagg ggattgatga ttttattcgg gcggcggaac
     2281 aggttaagga caaatacccc gatacggttt ttaccgcttt gggcgcaatc gacaaatcac
     2341 gcgcgggggg gggcgatttg gaacgccttg ccgcccgcga tattatccgt ttccccggtt
     2401 ttgtgaacaa tgtttccgaa gtgataaaag aacatcatat attcgtattg ccgtcttatt
     2461 atagggaagg cgttccccga agcactcagg aggcaatggc cgtcggcagg gcagtgatta
     2521 cgacggatgt ccccggatgc agggaaacgg tcgccgacaa ggtcaacggc ttcctgatcg
     2581 aaccttggaa tccccgcatc ttggccgaaa aaatgattta ttttatcgaa aacagggaag
     2641 ccgtccgcct gatggggaat gcaagttatg cgattgccaa agataaattc gatgccgaaa
     2701 aagtcgattt gaaattgctc gatattttga aggcgtaaac aaggctgccc gcttttgagt
     2761 ttcggtcatt tctgataaac ccccgtcatt cccgcga
//
LOCUS       DAXIFS010000205         2744 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.205, whole genome shotgun sequence.
ACCESSION   DAXIFS010000205 DAXIFS010000000
VERSION     DAXIFS010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.205"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(122..1573)
                     /locus_tag="ACFOCA_001849"
     CDS             complement(122..1573)
                     /locus_tag="ACFOCA_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HFC6988509.1"
                     /translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
                     VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
                     AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
                     LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
                     KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
                     STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
                     RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLNPDGIVMFNTTHSPHAFATA
                     VHSIPYAYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
                     VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
     gene            complement(1596..2216)
                     /locus_tag="ACFOCA_001850"
     CDS             complement(1596..2216)
                     /locus_tag="ACFOCA_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6988510.1"
                     /translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
                     ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
                     LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
                     LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
     gene            complement(2415..>2744)
                     /locus_tag="ACFOCA_001851"
     CDS             complement(2415..>2744)
                     /locus_tag="ACFOCA_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6988511.1"
                     /translation="LFVAGVTARTATEPDSIVYTDCYRSYDVLDVSEFSHFRINHSTH
                     FAERQNHINGIENFWNRAKRHLRKFNGIPKAHFELYLKECEWRFNNSEIKVQISILKQ
                     LVKSSLS"
BASE COUNT          851 a          643 c          624 g          626 t
ORIGIN      
        1 ataggaataa gaattcggga caaaatgttt aaaccatttt gtcccgactg ctgtgatgcg
       61 gtttttttga actagcagga cgttacctaa aacctgcgtt gcctgaaacc ctttaagacg
      121 gttaaatccc tctgccgtat ttgtattcta caatcatatt atcgtcggta ataacttccg
      181 ccccagccga aggttccgtc atctgaatca gcatacgaga gacaaccttt tgtgctgcag
      241 catccacggt gctgctgtca aatacgtgcc tgccgctttc cggccaaatc aaccgggaga
      301 gacgttgctt gagcagttct ttattaggga aaactaccgg ggttgccgag ccgactacca
      361 tatgcccata gcggtatgca tagggaatac tgtgtacggc ggtagcaaaa gcatgcgggc
      421 tgtgcgtggt attaaacatt acaataccat ccgggttaag gtggctttgc acctgtttta
      481 aaaattccgc actcaacagg ttggtggaat aggcacgcca gtaccaagtc gtattcatca
      541 aaatcaggtc gaatttttca tcaggatggc gacgcagcca tttcctaccg tcatccaata
      601 caatttcaac acgtttgtcc tgcaaaagcg gggcgatttg cggctcgtcc gcgataaggc
      661 tacggtatgc cggattgatt tccgcaacga tcatcgactg catttccgga atggcagaca
      721 agacgcgcgc ccacgaacct gtactcaatc caacgacgaa aatgcggcgt atgccagact
      781 tcagggaggg tagcagatag gcacgttcga tgccgttgac actattgaat acatcggtat
      841 tgtatgcgcc gtcgtataca ttcgccccat aaacaacctt atcaccatct ctatggtaaa
      901 ccgcaacaat gccgtgtttg ttttcaatca gcctatccgg acggtcagca atattttgaa
      961 agacagaatc cggcagtagg aacatgagga tgccgaacat tagggaaact gctaccgaca
     1021 ctgcattcag tcggagactt ttttggaaca gtgtacaaaa caaagggaca gcagcagaaa
     1081 tcaaacagat gagcaggtaa atctgttggg tggacaagaa atcaagtatc acaaagccga
     1141 taaggaccgg acccaatgca ctgccggcaa cgttggcgaa ataaacattg gaaacctgtc
     1201 gtccggattt gttgccatcc gtacccacat ggtgtacgag cgggaaaatc aaccctctga
     1261 cgacggcaga cagggtaatg aagataccgg cgtggtggac gaagccggaa aaacccgtca
     1321 acaaccacgc agcacccaaa atcaaaaagt cggcaatacc cgcccacaag aagcactgcc
     1381 cgataaaggg aatatcaaca aagcggctgc ggcaaatccg tttgccaaaa tacgcgccga
     1441 cggcgatacc ggtcagaaaa caggcaaggg taaatgaaaa tgcctgaggc acggactgtg
     1501 ctgcgaacga aaacatcctc acccacaaga cttctatacc caagctcaat aagccgctaa
     1561 ggaaagaaag catataaatc aaactagtat tcggtttagt gttcactata tccatccttt
     1621 ctgtaacgca gccatactga agcagcaatc agaaggttaa agcaggctgt cagcgcaatg
     1681 gtttgggaga gggtaaaaaa gacgtagaaa aattcggcgg cggcaagcga tccgagtgcc
     1741 gcacccaaag tgttgaaaaa atataaggta ccgatagact cgccaacatt atgtattttc
     1801 cggttaaaaa aacaggtcag caagggcaag gtcgcgccca tcataaaggt aggaagcagc
     1861 aataagagga aattggcagc agcgatgatg ggcaaatcag cctcaactaa aagatgcccc
     1921 aagccggaaa tcagacccct gcttaccaaa ccgaacagac cgatggatac ttcagcgatg
     1981 caaaacaggg ggatgatact tgaaggaaaa cggtcagcaa tgcgtccacc gaaatacgca
     2041 cctacaccca agccgaccat aaatacagaa ataatgacag taatcgaact caaatcgata
     2101 cctatgtgac tgaatagaag cctctgccag ctgacctggt aaatcagggc gcagaatcca
     2161 gaggcgaaaa acaccagcga caatcctttc agggttttac ttgcggtcga attcatattt
     2221 tctattttca aataggcgga actataaatg aaatgtatca atgtgtaaac atttgtatta
     2281 accgtaggaa atcaccgtat tgctcaaact gcaggccggg aaaataaact cgtaagcccg
     2341 caaacggcgt atcactgttc aaactgctgt gcggcttcac ggtgttataa aaataatggg
     2401 gctgtcctgg acaactaaga taaactcgat tttactaatt gttttaaaat ggaaatttga
     2461 acttttatct cactgttgtt aaaacgccat tcgcactcct ttaaatacag ctcaaaatgc
     2521 gctttgggaa tgccgttaaa cttgcgtaaa tgacgttttg cccggttcca aaaattctca
     2581 attccattga tatggttttg tcgttcagca aaatgtgtgc tgtgattgat acggaaatgg
     2641 ctaaattcgc tcacatctaa tacatcatag ctacgataac aatccgtata aacaatgctg
     2701 tcaggctctg ttgctgttct tgcagttaca cctgcgacaa atag
//
LOCUS       DAXIFS010000206         2736 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.206, whole genome shotgun sequence.
ACCESSION   DAXIFS010000206 DAXIFS010000000
VERSION     DAXIFS010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.206"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            219..>2736
                     /gene="dcm"
                     /locus_tag="ACFOCA_001852"
     CDS             219..>2736
                     /gene="dcm"
                     /locus_tag="ACFOCA_001852"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HFC6988512.1"
                     /translation="MKNQYSKSLHGVFYLAFYDKIHAFFAEQLFQLIINMNKKPTYIS
                     LFSSAGVGCYGFKTNGFECVATNELLEKRLKIQKYNQKCRFDSGYIAGDITLPETQAK
                     LFAEIRRWNTEIDVVIATPPCQGMSVANHKKNNEMARNSLVVESIKIVREVQPKFFIF
                     ENVKAFLKTPCTDTDYQEKPIEEAIWSNLGGHYNILSNVLNFKDYGANSSRTRTLVIG
                     VRKDIHHITPYDIFPKQTPPKTLRTLLADLPPLMQMGEISDDDIYHSYREFDRRMLPW
                     IAQLKEGESAFQNTDSARIPHQIKNGEIIYNQNKNGDKYARWFLDREGPCIHTRNDIL
                     ASQNTIHPTENRVFSVRELMRMMSIPPSFKWTAQDEKQLNALSFDEKKTFLKKEELNI
                     RHCIGESVPTAVLANVAQNIQAALQQSELSMTEIQNLIKRENLSLADNLYRFIEQHFD
                     AYPFSRLLQIAEYANAARSETAAYFTRIDIAFGLVNALPDFKKKKNLRILEPSVGIGN
                     FIPLLAKKYADKEKVIFDLVDIDSNSLNLLSLLLKKLNLGSKFEFNIIHQDFLTATLP
                     ENYDLVIGNPPYGKVKASDKNLALYRKNATNKDTQNIFSFFIDKALTLSKTVALVVPK
                     SVINAPEFQITRQQLITANINRIIDYGEKAFKGVKIETIAFIADQTDKDNQHITIESH
                     IQETLIQNCKNYFFSDNFPYWLIYRNSEFDQIAQKLEFNVFQSFRDRQITKAHTQNSG
                     NVRVLKSRNIGNNEIIDIEGYDSYVDSVAPFSVGKFINRKNVVMIPNLTYKPRAAFLP
                     ENSIADGSVALLTMKKHEKILTQRDLAYYATPEFEQFYRVA"
BASE COUNT          881 a          554 c          512 g          789 t
ORIGIN      
        1 cggtcgatgt gtttggcaat catggcttgg gcggtttgcc ggaagaaagt gctcatgaga
       61 aatcccctaa atgtcttggt gggaattggg ggatttgtgg gaattttgca aaggtctcag
      121 gttggcgttc agacggtgtt tctattaaaa acgtacctca agtttgaaac gcattgcaaa
      181 aaacaccgct gtatatctgt tcaaacagca cttttttgat gaaaaatcaa tatagtaaat
      241 cattgcatgg cgtgttttac cttgccttct atgataaaat acacgcattt tttgcagagc
      301 agttgtttca actcatcata aatatgaaca aaaaacccac ctacatcagt ttatttagca
      361 gtgcaggcgt tggttgctat ggttttaaaa ccaatggttt tgaatgcgta gcaaccaacg
      421 aacttttaga aaaacgccta aaaatccaaa aatataatca aaaatgccgc tttgattcag
      481 gttatattgc cggcgatatt accctgcctg aaacccaagc caaattgttt gccgaaattc
      541 gacgctggaa tactgaaatt gatgttgtga ttgccacacc gccttgccaa ggaatgtcgg
      601 ttgccaacca taaaaaaaat aatgaaatgg caagaaattc tttggtcgtg gaatcaatca
      661 aaatcgttcg ggaagttcag cccaagtttt ttatttttga aaacgtcaaa gcctttttaa
      721 aaacaccctg caccgatacc gattatcaag aaaagccgat tgaggaagcc atttggtcaa
      781 atttgggcgg acattacaac attctatcca atgtactaaa ttttaaagat tatggtgcaa
      841 attccagtcg taccagaacg ctggtgattg gcgtgcgaaa agatattcat cacattacgc
      901 cgtacgatat tttccccaag caaacaccgc caaaaacctt gcgtacattg ctggctgatc
      961 tgccgccttt aatgcaaatg ggcgaaatta gcgatgatga tatttaccat agctatcgtg
     1021 aatttgatcg ccgtatgttg ccgtggattg cacagcttaa agaaggcgag tcagctttcc
     1081 aaaatactga ttctgcacgc attccccatc aaattaaaaa tggtgaaatt atctacaatc
     1141 aaaacaaaaa tggagacaaa tacgcccgtt ggtttttaga tcgtgagggt ccgtgcatcc
     1201 atacccgtaa tgacatttta gccagccaaa acaccatcca tcccactgaa aaccgtgtat
     1261 tttccgtgcg tgaactcatg cgtatgatgt caattccgcc atcatttaaa tggacggcac
     1321 aagatgaaaa acagcttaat gcactgtcat ttgatgagaa aaaaaccttt ttgaaaaaag
     1381 aagagctgaa tatccgccat tgtatcggtg aatctgtgcc aaccgctgtt ttggccaatg
     1441 tcgcacaaaa cattcaggca gccttgcaac agtccgaact gtcaatgacg gaaattcaaa
     1501 atttaatcaa acgagaaaat ttatcccttg ccgataatct ctaccgattt attgagcaac
     1561 attttgacgc atatccattc agtcggcttt tgcaaattgc tgaatacgct aatgctgccc
     1621 gtagcgaaac ggctgcttat tttacccgta ttgatattgc tttcggactg gttaatgctc
     1681 ttcctgattt caaaaagaaa aaaaacttac ggattttaga accctctgtc ggcattggta
     1741 atttcattcc actactggca aaaaaatatg cagacaaaga aaaagttatt tttgatttgg
     1801 tggatattga ctcaaacagt ttaaatctcc tgtcattgct gctgaaaaaa ttaaatttag
     1861 gcagtaaatt tgagttcaat attattcatc aggatttttt aaccgcaacg ctgcctgaaa
     1921 actatgatct agtcatcggc aatccaccat acggcaaagt taaggcaagt gataaaaatt
     1981 tggcactata ccgtaaaaat gctaccaata aagatacgca aaatattttt tcatttttta
     2041 ttgataaggc tctgacgctc agtaaaaccg tggctttggt tgttcccaaa agtgtgatta
     2101 acgcccccga gtttcaaata acccgacaac aacttatcac agccaatatc aaccgcatta
     2161 ttgattacgg cgagaaagca tttaaaggcg taaaaataga gacgattgcc tttattgccg
     2221 atcaaaccga caaagacaat caacatatta cgatagaaag ccatatccaa gaaacgttga
     2281 tacaaaactg taaaaactat tttttttctg ataattttcc ctattggttg atttatcgta
     2341 atagtgaatt tgatcaaatt gcacaaaaat tggaatttaa tgtatttcaa tcattccgag
     2401 atcgccaaat taccaaagcg catacacaga atagtggcaa tgttcgggtt ttaaaatccc
     2461 gtaatatcgg taacaacgag attattgata ttgagggtta tgatagttat gtggattcag
     2521 ttgccccttt ttctgtcggc aaatttatta accgtaaaaa tgtcgtgatg attcccaatc
     2581 tgacttacaa acctcgggca gcatttttgc ctgaaaacag tattgctgat ggctcggttg
     2641 ccctactgac aatgaaaaaa cacgaaaaaa tcctaaccca acgagatctc gcatactatg
     2701 caactcccga atttgagcag ttttaccgtg ttgccc
//
LOCUS       DAXIFS010000207         2705 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.207, whole genome shotgun sequence.
ACCESSION   DAXIFS010000207 DAXIFS010000000
VERSION     DAXIFS010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.207"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            17..769
                     /locus_tag="ACFOCA_001853"
     CDS             17..769
                     /locus_tag="ACFOCA_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6988513.1"
                     /translation="MTSCEPVNEKTDQKAVSAQQAKEQTSFNNPEPMTGFEHTVTFDF
                     QGTKMVIPYGYLARYTQDNATKWLSDTPGQDAYSINLIEISVYYKKTDQGWVLEPYNQ
                     QNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPEYEAYEDK
                     RHIPENPYFHEFYYIKKGENPAIITHRNNRINQTEEDSYSTSVGSCINGFTVQYYPFI
                     REKQQLTQQELVGYHQQVEQLVQSFVNNSNKK"
     gene            786..2186
                     /locus_tag="ACFOCA_001854"
                     /pseudo
     CDS             786..2186
                     /locus_tag="ACFOCA_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
BASE COUNT          885 a          489 c          594 g          737 t
ORIGIN      
        1 tgggagtgtt tttactatga cctcatgtga acctgtgaat gaaaagacag atcaaaaagc
       61 agtaagtgcg caacaggcta aagaacaaac cagtttcaac aatcccgagc caatgacagg
      121 atttgaacat acggttacat ttgattttca gggcaccaaa atggttatcc cctatggcta
      181 tcttgcacgg tatacgcaag acaatgccac aaaatggctt tctgacacgc ccgggcagga
      241 tgcttactcc attaatttga tagagattag cgtctattac aaaaaaaccg accaaggctg
      301 ggttcttgag ccatacaacc agcaaaacaa agcacacttt atccaatttc tacgcgatgg
      361 tttggatagc gtggacgata ttgttatccg aaaagatgcg tgtagtttaa gtacgactat
      421 gggagaaaga ttgcttactt acggggttaa aaaaatgcca tctgcctatc ctgaatatga
      481 agcttatgaa gataaaagac atattcctga aaatccatat tttcatgaat tttactatat
      541 taaaaaagga gaaaatccgg cgattattac tcatcggaat aatcgaataa accaaactga
      601 agaagatagt tatagcacta gcgtaggttc ctgtattaac ggtttcacgg tacagtatta
      661 cccgtttatt cgggaaaagc agcagctcac acagcaggag ttggtaggtt atcaccaaca
      721 agtagagcaa ttggtacaga gttttgtaaa caattcaaat aaaaaataat ttaaaggatc
      781 ttattatgaa tgagggtgaa gttgttttaa caccagaaca aatccaaacc ttacgtggtt
      841 atgcttcccg tggcgatacc tatggcggtt ggcgttattt ggctaatttg ggcgaccgtt
      901 atgcggataa tgctgctgca attgtcggta aggatacaaa cttaaatggt ttgaatttat
      961 ggatgaaaaa aggggtggaa aacctatggg atgatacggt cggtaaaaag acccgtttag
     1021 agaaatttga tcgggttgca ttgcaacatt tcagccaata tgtagatcta attaataaaa
     1081 ataatggtag attacctaac actagtgaaa ttgagagaag ttactataaa gccgttacct
     1141 atcatggcgt ttcttctagt gcagctattg atttagttat taatcgttca cttccggata
     1201 tggcggatgg ttattgggca ttaggtttgg ggatagaagc cgaacgtatc cacaatgagc
     1261 aagcagtaaa taatccgaac ggtagcgaaa gggataatag aaagcagtta atatctgctt
     1321 tagataaagg atttgatgga tcttttaaag agaagcattt tactttttta caatctgtga
     1381 tgatggatct aacaaagtta ggtgttgaat atacaataga tggttggcaa aaaattggag
     1441 gttggggtaa tgggataatc aatgatttat ataaaagtgt tgcaaaaaga gagtggactg
     1501 gaatatttga gatcgttaat aataacatca agcaatttag agatctgttc ccaaatccgg
     1561 aaggctggat cgatgatggt caccaatgtt tcgctccttg ggttaaagaa actaaaaaac
     1621 gcaatggcaa atatcatgtc tacgaccccc tcgccctaga tttggacgga gacggtatag
     1681 aaaccgttgc caccaaaggc tttgcaggca gcttatttga tcacaccaac aacggtatcc
     1741 gcaccgccac cggttgggtt gctgccgatg acggtctgct tgtgcgcgat ttgaacggca
     1801 acggcatcat cgacaacggc gcggaactct tcggcgacaa caccaaactg gcagacggtt
     1861 cttttgccaa acacggctat gcagctttgg ccgaattgga ttcaaacggc gacaacatca
     1921 tcaacgcggc agacgccgca ttccaatccc tgcgtgtatg gcaggatctc aaccaggacg
     1981 gcatttccca agctaatgaa ttgcgtaccc ttgaagaatt gggtatccaa tctttggatc
     2041 tcgcctataa agatgtaaat aaaaatctcg gtaacggtaa cactttggct cagcaaggca
     2101 gctataccaa aacagacggt acaaccgcaa aaatggggga tttactttta gcagccgaca
     2161 atctgcacag ccgcttcacg aacaaaatgc tatccattag ccatgttcgg gaaaacacga
     2221 tttccccgtt tgttttaggc tgtctaaaca aataaccata aatgtatatc attatttaaa
     2281 ataaataaaa gtatttaact attattgacg aaattttaga gaaagagtag actgtcgatt
     2341 aaatgacaaa caatagtgag aaaggaaata tttactatcc gagcacagag catattttag
     2401 gtagcctgta actgttcctg ctggcggaag aggatgaagg tggacttacc cgagaataaa
     2461 tgtcctgttg tgtgatatgg atgccatgcc gcgaagcaat tgatgcaatc acggcagtcc
     2521 tacttgaatg aaacctgtcg ttgcagaatt tgaaaacgct atttttaaga aaggataaag
     2581 ggagaaagaa tttttggttt ttaagctgca tgaaaccgtg ttggaataaa tgcacaccta
     2641 cgataattaa taattttcgt tttttattct acaagctatt tatatatgat tgctaaaagt
     2701 ttatt
//
LOCUS       DAXIFS010000208         2674 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.208, whole genome shotgun sequence.
ACCESSION   DAXIFS010000208 DAXIFS010000000
VERSION     DAXIFS010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.208"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..161
                     /locus_tag="ACFOCA_001855"
     CDS             <1..161
                     /locus_tag="ACFOCA_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="barnase inhibitor"
                     /protein_id="HFC6988514.1"
                     /translation="NVERPITLVWKDAMFSKNQLENIFIEIVNVLERVKKQDEDYGFE
                     EKFNYILE"
     gene            675..1913
                     /locus_tag="ACFOCA_001856"
     CDS             675..1913
                     /locus_tag="ACFOCA_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EndoU domain-containing protein"
                     /protein_id="HFC6988515.1"
                     /translation="MIASLTGAAVGGTPVDAQTGGAVGQNAVENNLYLTSEALKKDKQ
                     TARKIYSVIKEQVKHECSSTGRITECRQNIGRIIEFTQDKRFDSRFKDLKKESLYYLN
                     KHPDLVASYLKAEYEKLDREDKSILHRYISPGAEIVSGSLGVVLSGVAGGGSCAETFG
                     LGCAAALVGVTSSYDHVITGTKNFGKKASEQRPTIAVQALKQLGLSEQAAEYVQFSID
                     LFSVGKSGGGIPKAKPVFDAKPRWEVDRKLNKLTTREQVEKNVQETRRRSQSSQFKAH
                     AQREWENKTGLDFNHFIGGDINKKGTVTGGHSLTRGDVRVIQQTSAPDKHGVYQATVE
                     IKKPDGSWEVKTKKGGKVMTKHTMFPKDWDEARIRAEVTSAWESRIMLKDNKWQGTSK
                     SGIKIEGFTEPNRTAYPIYE"
     gene            1944..2363
                     /locus_tag="ACFOCA_001857"
     CDS             1944..2363
                     /locus_tag="ACFOCA_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988516.1"
                     /translation="MKRIKCFCDKFPSGDTFRMCIILDDYDNRVDYYVGIYDYITSTL
                     MSDIYYRSTIDEHFKIIELIENNPNEIYDDGGGQQFCLEFHHDKVIFYHNEFDEEDGY
                     PVLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
     gene            2453..2524
                     /locus_tag="ACFOCA_001858"
                     /pseudo
     CDS             2453..2524
                     /locus_tag="ACFOCA_001858"
                     /inference="COORDINATES: protein motif:HMM:NF026862.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin type 17 domain-containing
                     protein"
BASE COUNT          896 a          451 c          643 g          684 t
ORIGIN      
        1 caaatgtaga acgaccgatt actttggtat ggaaagatgc tatgttctca aaaaatcaat
       61 tagaaaatat atttattgaa atcgtaaatg ttctagaaag agttaagaaa caagatgagg
      121 attatggatt cgaagaaaaa tttaattata ttttagagta agtaaaccct aattacatta
      181 cgtacacagg cttaaaactc cccagagcca attaagcaag ccgtaaccca tataaaactt
      241 aaactcaaca agtagcatgt gtgcggaacg tacgcatgcg gttcttaaag tttgagctaa
      301 gaggccgtct aaaaacagaa aaaccgtttc agacggtctt tgtttaacgc caccgatcca
      361 gcgggttaca aagcgcagtc aatgccgctg cgccttatgc ctccgaagca ataggcagaa
      421 catttggaca cggtgaaaac aaaaacgaaa ccgcccaagc cgtcggacat ttccttttag
      481 gagcagctat tgcccgcgtc aacggtggta attttgctgc cggcggctcg gcagcagttg
      541 cagctgaaaa ggcggcggaa catcttgccc aacagtataa cgacggtaaa accgcaatcg
      601 atccgcaaac aggcgagttc aatgccaacc tgctgccgga acatatcaaa gaggaaatca
      661 aatcaaagag cggggtgatt gcatcgctga cgggcgcggc cgtgggcggc acgccggtag
      721 atgcgcaaac cggaggtgcg gtcggacaga atgcggtgga aaacaacctc tatctgacat
      781 cggaagcctt aaagaaggac aagcagacag ctcgtaaaat ttattccgtc ataaaagagc
      841 aagtcaagca tgaatgcagt tccacaggaa gaattaccga atgtcgtcaa aatataggac
      901 gcattatcga atttacccaa gacaaacgct ttgacagtag gtttaaggac ttaaaaaaag
      961 aatccttata ttacctaaat aaacatcctg atttagtagc ctcttatttg aaggctgaat
     1021 acgaaaagct ggatagggaa gacaaaagta tcctgcaccg ctacatctca cccggggctg
     1081 aaatcgtttc gggcagtttg ggggttgttc tttcaggagt agccggaggc ggatcttgtg
     1141 ccgagacttt cggcttaggc tgtgccgccg ctttggttgg tgtaacgtct tcctacgatc
     1201 atgtcattac tgggacgaaa aacttcggaa aaaaagccag cgagcaacga ccgacgattg
     1261 cggttcaggc cttgaagcag ttggggctgt cggagcaggc tgcggaatat gttcagttct
     1321 ctatagattt gttcagtgtg ggtaaatcgg ggggcggtat acctaaggct aagcctgtgt
     1381 ttgatgcgaa accgagatgg gaggttgata ggaagcttaa taaattgaca actcgtgagc
     1441 aggtggagaa aaatgttcag gaaacgagaa gaaggagtca gagtagtcag tttaaagccc
     1501 atgcgcaacg agaatgggaa aataaaacag ggttagattt taatcatttt ataggtggtg
     1561 atatcaataa gaaaggcaca gtaacaggag ggcatagtct aacccgtggt gatgtacggg
     1621 tgatacaaca aacctcggca cctgataaac atggggttta tcaagcgaca gtggaaatta
     1681 aaaagcctga tggaagttgg gaggtgaaaa cgaaaaaagg tgggaaagtg atgaccaagc
     1741 acaccatgtt cccaaaagat tgggatgagg ctagaattag ggctgaagtt acttcggctt
     1801 gggaaagtag aataatgctt aaggataata aatggcaggg tacaagtaaa tcgggtatta
     1861 aaatagaagg atttaccgaa cctaatagaa cagcatatcc catttatgaa tagtaatatt
     1921 tatgaaaaat taggagatta atgatgaaaa gaattaagtg cttttgtgat aaatttccat
     1981 caggagatac atttagaatg tgtatcattc tggatgacta tgataatagg gttgattatt
     2041 atgtaggaat atatgattac attacgtcta ccttaatgag cgatatttac tatcgatcca
     2101 cgattgatga gcatttcaag attatagaat taatagaaaa taatccaaat gaaatttatg
     2161 atgatggcgg tggtcaacaa ttttgcctag aatttcatca tgataaggtc attttttacc
     2221 acaatgaatt tgatgaagaa gatggttatc cagtattaag ctgttcgctg catactttta
     2281 aaactgcttt aattgcttgg aatgcttttt tgcaattgcc taaaagtatt cattcggtgg
     2341 tggagactgt gattgaggaa taagcataat tagcttaatg aatagaatca gcgatataga
     2401 ttggactgca aatccacgct tatacgctgt gccatgatta acaggaagag agcaacttgg
     2461 atgggctagt agggatggta agcatttaaa tatatcaatt gatggaaaga ttacacacaa
     2521 atgactaatt taaaattaga tttctactct gaagttatta taaaagattc ttgccctaat
     2581 gatttgttag aaaatggtga gactattaaa ggaaaaaaag gagtggtatt aggtataagc
     2641 gaagaagatg gtataatcta tggctatact attt
//
LOCUS       DAXIFS010000209         2630 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.209, whole genome shotgun sequence.
ACCESSION   DAXIFS010000209 DAXIFS010000000
VERSION     DAXIFS010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.209"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            425..2566
                     /gene="fetA"
                     /locus_tag="ACFOCA_001859"
                     /gene_synonym="frpB"
     CDS             425..2566
                     /gene="fetA"
                     /locus_tag="ACFOCA_001859"
                     /gene_synonym="frpB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021438799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor FetA/FrpB"
                     /protein_id="HFC6988517.1"
                     /translation="MNAPFFRLSLLSLTLAAGFAHAAENNAKVVLDTITVKGDRQGSK
                     IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNA
                     YSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLD
                     KNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNDEKDYEAGKGFRNDNGGKT
                     VPYSALDKRSYLAKIGTSFGDDDHRIVLSHMKDQHRGIRTVREEFAVSEKNSRITIKR
                     QAPAYRETTQSNTNLAYTGKDLGFVEKLDANAYVLEKKRYSADDKDNGYAGNVKGPNH
                     TRITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSQFKIEDKTGATPAEIQK
                     NRADEATAHDYKLSNPTKTDTGAYIEAIHEIDGFTLTGGLRYDRFKVKTHDGKTVSSS
                     NLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKAERARNT
                     EIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVAVREAVNAGYIKNHGYELGASY
                     RTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFKNPNLEIGW
                     RGRYVQKATGSILAAGQKNRDKQLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNV
                     FNTFYYPHSQRWTNTLPGVGRDVRLGVNYKF"
BASE COUNT          744 a          758 c          584 g          544 t
ORIGIN      
        1 atccagtctg ttcggtttca gtcatttccg atagattcct gccgcgttag gggttctaga
       61 ttcccgcttt cgcgggaatg acgcggaaag gttgcttttc gtcattcccg catttgttaa
      121 tccactatat ttccgccgtt ttttatagtg gactaacaaa aaccagtaca gcgttgcctc
      181 gccttgccgt actatctgta ctgtctgcgg cttcgtcgcc ttatcctgat ttttgttagt
      241 ccactataca tttccgacaa aacctgtcaa caaaaaacaa cacttcgcaa ataaaaacga
      301 taatcagctt tacacaaatc ccccctctcg ttaatataaa caaaaataat tattattttt
      361 cttatcctgc caaaccttaa cggtttggat ttacttccct tcatacactc aaaaggacga
      421 acaaatgaac gccccgtttt tccgcctcag cctgctctcg cttaccctgg cggcaggttt
      481 tgcccatgcg gcagaaaata atgccaaggt cgtactggat accattaccg taaaaggcga
      541 ccgccaaggc agcaaaatcc gtaccaacat cgttacgctt caacaaaaag acgaaagcac
      601 cgcaaccgat atgcgcgaac tcttaaaaga agagccctcc atcgatttcg gcggcggcaa
      661 cggcacgtcc caattcctga cgctgcgcgg catgggtcag aactctgtcg acatcaaggt
      721 ggacaacgcc tattccgaca gccaaatcct ttaccaccaa ggcagattta ttgtcgatcc
      781 cgctttggtt aaagtcgttt ccgtacaaaa aggcgcgggt tccgcctctg ccggtatcgg
      841 cgcgaccaac ggcgcgatta tcgccaaaac cgtcgatgcc caagacctgc tcaaaggctt
      901 ggataaaaac tggggcgtgc gcctcaacag cggctttgcc agcaacgaag gcgtaagcta
      961 cggcgcaagc gtattcggaa aagagggcaa cttcgacggt ttgttctctt acaaccgcaa
     1021 cgatgaaaaa gattacgaag ccggcaaagg tttccgcaat gacaacggcg gcaaaaccgt
     1081 accgtacagc gcgctggaca aacgcagcta cctcgccaaa atcggaacaa gcttcggcga
     1141 cgacgaccac cgcatcgtat tgagccacat gaaagaccaa caccgaggca tccgcactgt
     1201 gcgtgaagag tttgccgtca gcgaaaaaaa ttcacggata actattaaac gccaagcccc
     1261 tgcttaccgc gaaaccactc aatccaacac caacttggcg tacaccggca aagatttggg
     1321 ctttgtcgaa aaactggatg ccaacgccta tgtgttggaa aagaaacgct attccgccga
     1381 tgacaaagat aacggctacg caggcaatgt aaaaggccct aaccataccc gaatcaccac
     1441 tcgaggtatg aatttcaact tcgacagccg ccttgccgaa caaaccctgt tgaaatacgg
     1501 tatcaactac cgccatcagg aaatcaaacc gcaagcgttt ttgaattcgc aatttaaaat
     1561 tgaagataaa actggtgcaa ccccggcaga aatacaaaaa aaccgtgcag atgaagccac
     1621 tgctcacgac tacaaactgt ccaacccaac caaaaccgat accggcgcgt atatcgaagc
     1681 cattcacgag attgacggct ttaccctgac cggcgggctg cgttacgacc gcttcaaggt
     1741 gaaaacccat gacggcaaaa ccgtttcaag cagcaacctt aacccgagtt tcggtgtgat
     1801 ttggcagccg cacgaacact ggagcttcag cgcgagccac aactacgcca gccgcagccc
     1861 gcgcctgtat gacgcgctgc aaacccacgg taaacgcggc atcatctcga ttgccgacgg
     1921 cacgaaagcc gaacgcgcgc gcaataccga aatcggcttc aactacaacg acggcacgtt
     1981 tgccgccaac ggcagctact tctggcagac catcaaagac gcgcttgcca atccgcaaaa
     2041 ccgccacgac tctgtcgccg tccgtgaagc cgtcaacgcc ggctacatca aaaaccacgg
     2101 ttacgaattg ggcgcgtctt accgcaccgg cggtctgact gccaaagtcg gcgtaagcca
     2161 cagcaaaccg cgcttttacg atacgcacaa agacaagctg ttgagcgcga atcctgaatt
     2221 tggcgcacaa gtcggccgca cttggacagc ctcccttgcc taccgcttca aaaacccgaa
     2281 tctggaaatc ggctggcgcg gccgttatgt tcaaaaagct acgggttcga tattggcagc
     2341 aggtcaaaaa aaccgcgaca aacaattgga aaacgttgta cgcaaaggtt tcggtgtgaa
     2401 cgatgtcttc gccaactgga aaccgctggg caaagacacg ctcaatgtca atctttcagt
     2461 caacaacgtg tttaacacgt tctactatcc gcacagccaa cgctggacca ataccctgcc
     2521 gggcgtggga cgtgatgtac gcttgggcgt gaactacaag ttctaaaacg cacatcccga
     2581 aaaaatgccg tctgaaagcc tttcagacgg catctgttct gataatttga
//
LOCUS       DAXIFS010000210         2580 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.210, whole genome shotgun sequence.
ACCESSION   DAXIFS010000210 DAXIFS010000000
VERSION     DAXIFS010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.210"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..128
                     /locus_tag="ACFOCA_001860"
     CDS             <1..128
                     /locus_tag="ACFOCA_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HFC6988518.1"
                     /translation="KFRYARAAYFGLIKVSAQSHLKAMCLNLLKAANRLSAPAAA"
     gene            complement(170..469)
                     /locus_tag="ACFOCA_001861"
     CDS             complement(170..469)
                     /locus_tag="ACFOCA_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988519.1"
                     /translation="MKDFDEVCEKWEKSFKENGKEIEYNQKYSRIYGEVRGAGFNGDI
                     GEKLHRCAVMEWAENETETFAKFLSLPTAETQTQVFSCFQLFSPQIPPNFTQIPP"
     gene            536..862
                     /locus_tag="ACFOCA_001862"
                     /pseudo
     CDS             536..862
                     /locus_tag="ACFOCA_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            1827..2063
                     /locus_tag="ACFOCA_001863"
     CDS             1827..2063
                     /locus_tag="ACFOCA_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HFC6988520.1"
                     /translation="MKELHTSELVEVSGGKFHISAQGGGNLGKKDMVAVGKIGASYSP
                     NNSGVEFSVSKQFGYVQGFGVQFSKPTFGFSKKW"
     gene            complement(2367..>2580)
                     /locus_tag="ACFOCA_001864"
     CDS             complement(2367..>2580)
                     /locus_tag="ACFOCA_001864"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988521.1"
                     /translation="FIKEYYHQQVLPYCTAPVIAPPIAPNFAPGIAPIPPANEPTIAP
                     PAAPPNALPMVFFEKSRQLQAAPETC"
BASE COUNT          798 a          458 c          544 g          780 t
ORIGIN      
        1 gtaaattccg ctatgcgcgg gcagcctatt tcgggctgat taaagtgagt gcgcaaagcc
       61 acctgaaggc gatgtgtttg aacctgttga aagccgccaa caggctaagt gcgcccgctg
      121 ccgcctaaaa ggcagcacgg atgcctgatt atcaggtgtc cggggaggat taagggggta
      181 tttgggtaaa attaggaggt atttggggcg aaaacagctg aaaacagctg aaaacctgtg
      241 tttgggtttc ggctgtcggg agggaaagga attttgcaaa ggtctcggtc tcattttcag
      301 cccattccat cacggcacaa cgatgtagct tttctccgat atcgccatta aagccagctc
      361 cacgaacttc accataaatt cttgaatatt tttgattata ttcaatttct tttccatttt
      421 ctttaaagga tttctcccac ttttcacaaa cttcatcaaa atctttcaaa gggatatttt
      481 ttaaggggct gtcctagata actagggaaa ttcaaattaa gttagaatta tccctatgag
      541 aaaaagtcgt ctaagccagt ataaacaaaa taaactcatt gaactgtttg tcacaggtgt
      601 aactgcaaga acggcagcag agttagtagg cgttaataaa aataccgcag cctattattt
      661 tcatcgttta cgattactta tttatcaaaa cagtccgcat ttggaaatgt ttgatggcga
      721 agtagaagca gatgaaagtt attttggcgg acaacgcaaa ggcaaacgcg gtcgcggtgc
      781 tgccggtaaa gtcgccgtat tcggtctttt gaagcgaaat ggtaaggttt atacggttac
      841 agtaccgaat actcaaaccg cttaaaattc catgtttgtg tactgaaatg cttcaaaaca
      901 ccaaaccaag tttcgttttc taaaatacga aaccattact gctgcctaaa tttttttgga
      961 ttgctaaatt atggcagtat gattttggat tttaaattga aaggcaagaa aaatgtcaaa
     1021 aaatgatgta gttaaagtaa ttggtatatt ccccctattg tccgaacaat agagcagact
     1081 tcccggcagg tcaaattgtt ttaaaacacg gcgaacacaa aaaggttaat cacggctttg
     1141 gtgtgattca cattttggca gaacacaaag cagatttaac gcggtttgga ttaagccacg
     1201 atgaaacagg tgtaaccctt ttatgtggaa atgatttttc aatcaggcgc aaaaattttt
     1261 agtgaattta gtgatgtaag gggcaatcat cgtcctatga ttgtctattc tcggattggg
     1321 acagtcgttt tagaacgcaa agaagttgag ggggaaagtg tgtattcagt tgttaccgcg
     1381 tttgggcgaa caagccctcg tggtacacaa attggtacaa tgccataaaa agacaaaagc
     1441 acccaataat ttcaggtgct ttgtgtagta gccgcagcct ctccttagct tgatagggtc
     1501 ggataccaat ctgacgattg agctactgaa attggttagc gacaaccaac ctgcccacat
     1561 cagaacgccc gttcgctggt ttgtacgtcc tgaaaaagct cttgcattaa gttaatcata
     1621 atgggaaatt taaatttttt caatgcttac ttaaacaaaa gccccactcc accattagga
     1681 gtttcttttt cagtatacaa gtaaatattt ttaaaatatt gatttaattt aaaataaaat
     1741 acttgcaaaa aaaagtatta aattaaactt gagaaaggtt aattctgatt tacatttcca
     1801 accatacttc tttacaggag aaaatcatga aagagttaca cacctctgaa ttagttgaag
     1861 tgtcaggtgg caaattccat atctctgcac agggtggcgg caacctaggt aaaaaagata
     1921 tggttgctgt tggtaaaatt ggtgcttcct attcccctaa caatagtgga gtagagtttt
     1981 ctgttagcaa gcaatttgga tatgtacaag gttttggtgt acagttttcg aaacctactt
     2041 ttggttttag taaaaaatgg taagattttt tgttttatcc tttctgacat taataaatct
     2101 atgctcatta agcgcatgca atagccactt tacaggaaat atcaatccat taggtactca
     2161 caataaagtt gctaatccca gttgtgccaa tagtgccaat agtcatatca gacaacccag
     2221 tagtaaaaac tatgatccaa ctgaatatag tgcttggtta cagcatatgc atgattgcaa
     2281 ataatgagta acgatgaaaa tttacttttt tctcaaccac acttaacaaa ggtgaatatt
     2341 atgcaagttt tgactttgaa tgaaatttaa caagtttctg gtgctgcttg taactggcgt
     2401 gatttctcaa aaaataccat tggtagtgca ttaggtggag cagctggtgg ggcaattgtt
     2461 ggttcatttg caggtggtat tggtgctatt ccaggtgcga aattcggagc tattggtggt
     2521 gcaatcactg gtgctgtaca atatggaagc acttgttggt ggtaatattc cttaataaaa
//
LOCUS       DAXIFS010000211         2577 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.211, whole genome shotgun sequence.
ACCESSION   DAXIFS010000211 DAXIFS010000000
VERSION     DAXIFS010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.211"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..249
                     /locus_tag="ACFOCA_001865"
     CDS             <1..249
                     /locus_tag="ACFOCA_001865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988522.1"
                     /translation="CTGLNLNHYKINFTENMPPHIRHSTSDRRQTRENHFPLPFTPPR
                     SNTPRSNKARTKPPKYAIIATHIPRAMCSKRKNQPTRE"
     gene            254..2479
                     /locus_tag="ACFOCA_001866"
     CDS             254..2479
                     /locus_tag="ACFOCA_001866"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFC6988523.1"
                     /translation="MTQKSTIVYTHTDEAPALATQSLLPIVQAFARHADIDVKTSDIS
                     LSGRILAAFPEYLTEAQRVPDALAELGELVKQPDANVIKLPNISASVPQLTAAIKELQ
                     SKGFAVPDYPADPQTDEEKAVRERYDRIKGSAVNPVLREGNSDRRAPKAVKNFAKKNP
                     HSMGAWTKDSKTHVATMQSGDFFHNEQSVIVPEATSVSIVFTDKQGNKKELREPVALK
                     AGEIIDATVMSKKALLAFLAEQVKDAKAKGVLFSLHMKATMMKVSDPIIFGHAVKVFF
                     APVFEKFGDKLAAAGVNVNNGFGNLLANLDKLDADTRTAVEAEIAAVYAANPDLAMVD
                     SDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKNGKAQDTKAVIPDSSYAGVYQATID
                     FCREHGAFDPTTMGTVPNVGLMAQAAEEYGSHNKTFEIEADGQVQVIDAEGKVLMQHD
                     VEAGDIWRMCQTKDAPVKDWVQLAVNRARLSNTPAVFWLDENRPHDKSLLAKVKAYLA
                     ELDTNGLDIRVLAPEEAAKFSLGRLKNGEDTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGMFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAVSFEHLAQKTGN
                     AKAQVLADTLDAATEKLLLNGKSPKRKAGELDNRGSHFYLTLYWAQELAEQDKDAELK
                     AAFTPLAAALTADEAKIVAELSAVQGKAVDIGGYYAANPEKAAQVMRPSVTFNQALNA
                     L"
BASE COUNT          713 a          776 c          596 g          492 t
ORIGIN      
        1 tgtactggtt taaatttaaa ccactataaa atcaatttca ccgaaaatat gccgccgcac
       61 atcaggcaca gcacctccga ccgccgccaa acgcgggaaa accatttccc ccttcctttc
      121 acgccgccgc gttcaaacac gccaagatcg aacaaagcgc gaacaaagcc gccaaaatat
      181 gccataatag ccacgcacat tccccgcgca atgtgttcca aaagaaaaaa ccaacctaca
      241 agagaataat cctatgactc aaaaatccac cattgtttat acccataccg acgaagcacc
      301 cgcgctggcg acccaatcgc tgctgccgat tgtgcaggct tttgcccgcc acgccgatat
      361 tgatgtcaaa accagcgaca tttctctctc cggccgtatt ttggcggcgt ttcccgaata
      421 cctgaccgaa gcgcaacgcg tacctgatgc gcttgccgaa ttgggcgaac tggtgaaaca
      481 acccgatgca aacgtaatca aactgccgaa catcagcgcg tccgtaccgc aactgactgc
      541 cgcgattaaa gaattgcaat ctaaaggctt tgccgttccc gactatcccg ccgacccgca
      601 aaccgatgaa gaaaaagccg tacgcgaacg ctacgaccgc atcaaaggca gcgcggtaaa
      661 ccctgtcctg cgtgaaggca actccgaccg tcgcgcccct aaagcagtga aaaactttgc
      721 gaaaaaaaat ccgcacagca tgggcgcatg gaccaaagac tccaaaaccc acgttgccac
      781 catgcaaagc ggcgactttt ttcataacga acaatctgtt atcgtacctg aagcgacttc
      841 cgtatccatc gtattcaccg acaaacaagg caacaaaaaa gagctgcgcg agcccgtcgc
      901 cctgaaagcc ggcgaaatca tcgacgcgac cgtgatgagt aaaaaagccc tgctcgcctt
      961 ccttgccgaa caagtaaaag atgcgaaagc aaaaggcgtg ttgttctcgc tgcacatgaa
     1021 agccactatg atgaaagtgt ccgacccgat tatcttcgga cacgccgtca aagtattctt
     1081 cgcgcctgtt tttgaaaaat tcggcgacaa actggctgcc gcaggtgtca acgtcaacaa
     1141 cggcttcggc aacctgcttg ccaatctgga caaactggat gcggacaccc gcaccgccgt
     1201 cgaagccgaa atcgccgccg tttacgctgc caaccccgat ttggcgatgg ttgattccga
     1261 caaaggcatc accaacctgc acgttcccag cgatgtcatc gtcgatgcct ctatgcctgc
     1321 gatgattcgc aattccggcc gtatgtggga caaaaacggc aaagcgcaag acaccaaagc
     1381 cgtgattccc gacagcagct atgccggcgt ttaccaagca accatcgact tctgccgcga
     1441 acacggcgca tttgacccga caaccatggg tactgtgccc aacgtcggac tgatggcgca
     1501 agcggcggaa gaatacggct cgcacaacaa aacctttgaa atcgaagccg acggtcaggt
     1561 tcaagtcatt gatgcggaag gaaaagtcct gatgcaacac gacgttgaag caggcgacat
     1621 ctggcgtatg tgccaaacca aagacgctcc ggtcaaagac tgggtgcaac tcgccgtcaa
     1681 ccgcgcccgc ctgagcaaca cgcctgccgt gttctggctc gatgaaaacc gtccgcacga
     1741 caagagcctg ctcgccaagg ttaaagccta ccttgccgaa ctggatacca atggcctcga
     1801 catccgcgtc ctcgctcctg aagaagccgc caagttcagc ttgggtcgtc tgaaaaacgg
     1861 cgaagacacc atctccgtaa ccggtaatgt cttgcgcgac tacctgaccg acttgttccc
     1921 aattttggaa ctcggcacaa gcgcgaaaat gctgtctatc gttccattaa tgaacggcgg
     1981 cggtatgttt gaaaccggcg cgggcggttc tgcaccgaaa cacgttcaac agttcctcga
     2041 agaaaaccac ctgcgttggg actctttggg cgaattcctc gcactcgccg tatcgtttga
     2101 acatttggcg caaaaaaccg gcaatgccaa agcccaagtc ctcgctgaca ctttggatgc
     2161 cgccaccgaa aaactgctgt tgaacggcaa atcgcctaaa cgtaaagccg gcgaactcga
     2221 caaccggggc agccatttct accttaccct ctactgggcg caagaattgg cggagcaaga
     2281 caaagatgcc gaactgaaag ccgcatttac gccattggca gccgctttga ccgccgacga
     2341 agcgaaaatc gttgccgagc tttccgccgt acaaggcaaa gcggtcgaca tcggcggcta
     2401 ctacgcagcc aatcctgaaa aagcggcaca agtgatgcgt ccgagcgtaa cctttaatca
     2461 ggcactaaac gccttataag cacaaaggta aaaatgccgt ctgaacattc gtcgttcaga
     2521 cggcattagt tatccctatc tgcctgatta tgattaaacg ccgcacccat tggatat
//
LOCUS       DAXIFS010000212         2489 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.212, whole genome shotgun sequence.
ACCESSION   DAXIFS010000212 DAXIFS010000000
VERSION     DAXIFS010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.212"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..183)
                     /locus_tag="ACFOCA_001867"
     CDS             complement(<1..183)
                     /locus_tag="ACFOCA_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA adenine N-6-methyltransferase family
                     protein"
                     /protein_id="HFC6988524.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLA
                     AITEPLAKKLNRLHVVE"
     gene            380..1090
                     /locus_tag="ACFOCA_001868"
     CDS             380..1090
                     /locus_tag="ACFOCA_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6988525.1"
                     /translation="MLFEGLPCLAVWCKNRLSAVLPVGGLNVSENLLEIETHPFDSVL
                     PPKAAVMMMGTFPPKEDKRAMQFHYPNFQNDMWRVYGLVFFGDADYFKVPSNGEAAHS
                     EKAFDAEKIKAFLHERGIASCPTVLKAVRQHGNASDKFLKVVETVDLAAVLAKIPECR
                     HICTTGGKATEILLDIQGGGIKMPKTGETVPFPFAGRDLTLTRLPSTSRAYPLSLAKK
                     AAAYRAFFEMAGLCEKQL"
     gene            1275..2477
                     /gene="trpB"
                     /locus_tag="ACFOCA_001869"
     CDS             1275..2477
                     /gene="trpB"
                     /locus_tag="ACFOCA_001869"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFC6988526.1"
                     /translation="MKNYHAPDEKGFFGEHGGLFVSETLIPALQELADAYKAAKNDPE
                     FWEAFRHDLKHYVGRPSPVYHAARLSEHLGGAQIWLKREDLNHTGAHKVNNTIGQALL
                     AKRMGKKRVIAETGAGQHGVASATVAARFGMTCDVYMGADDIQRQMPNVFRMKLLGAN
                     VVGVESGSRTLKDAMNEAMREWVARVDDTFYIIGTAAGPAPYPEMVRDFQCVIGNEAK
                     AQMQEAIGRQPDVAVACVGGGSNAIGLFHPYIGEENVRLVGVEAGGLGVNTPDHAAPI
                     TSGAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTVAK
                     DDEALEAFDLLCRFEGIIPALESSHAVAWAVKNAPKMGKDQVILVNLSGRGDKDINTV
                     AKLKGIKL"
BASE COUNT          576 a          645 c          717 g          551 t
ORIGIN      
        1 ttcgacaacg tgcaggcggt tcagcttttt cgccaaaggt tcggtaatcg ccgccaaacc
       61 cggaccgatt tcaatcacga catcatccgc ctgcgggcgc acggcgttga caatatcgct
      121 gataatccgc gtgtcctgca aaaaattctg cccgaaacgc ttgcgggctt tgtgttcttt
      181 catcgtgttt ccttttcggt tgaaaccccg ccctttaggg cggtagaatc agactctatt
      241 tgggaggggc gtaacccctt ccaaatcagg atggcacata gggcggtgct ttatgtgtcg
      301 tcctgtgtat tgaaacataa atgtgtttac agtatccgtt tgatgtcggc attgtaaccg
      361 aaaacggcag ggcgtgataa tgctgtttga aggcttgccg tgtttggcgg tttggtgcaa
      421 aaaccggctg tctgccgttt tgcctgttgg aggattgaac gtgtctgaaa atctgcttga
      481 aatcgaaacc catcccttcg attccgtgtt gccgccgaag gctgcggtca tgatgatggg
      541 gacgtttccg cccaaggaag acaaacgcgc gatgcagttt cattatccga atttccaaaa
      601 cgatatgtgg cgcgtttacg ggctggtgtt tttcggcgat gcggattatt tcaaagtgcc
      661 gtccaacggg gaggctgcgc actctgaaaa agcgtttgat gccgagaaaa tcaaggcgtt
      721 tttgcacgaa cgggggattg cgtcctgtcc gaccgttttg aaggcggtac gtcagcacgg
      781 caatgcgtcc gacaagtttt taaaggtagt tgaaaccgtc gatttggcgg cggtgttggc
      841 aaaaataccc gagtgccgcc atatttgtac gacaggcggc aaggcgacgg aaatcctgct
      901 cgatattcaa ggtggcggca tcaaaatgcc gaaaacgggc gaaaccgtgc cgtttccgtt
      961 tgccggacgg gatttgacgc tgacgcgcct gccttcgact tcgcgtgcct atcctttgag
     1021 tttggcgaaa aaggcggcgg cgtatcgggc gtttttcgaa atggcgggtt tgtgtgaaaa
     1081 acagttataa ttgccgacaa tttcccgttc ggacggcatg tttgaaaaat atagtggatt
     1141 aacaaaaatc aggacaaggc ggcgaagccg cagacagtac aaatagtacg gcaaggcggg
     1201 gcaacgccgt accggttttt gttaatccac tataaattgc cgtctgaaaa tttgaagcac
     1261 aaggacgaaa tctgatgaag aactaccacg cgcccgacga gaagggcttt ttcggcgaac
     1321 acggcgggct gttcgtgtcc gagaccctga ttccggcttt gcaagagctg gcggatgcct
     1381 ataaggcagc gaaaaacgat cctgaatttt gggaagcgtt ccgccatgat ttgaaacatt
     1441 atgtcggcag gcccagcccc gtttaccacg ccgcgcggtt gtccgaacat ctgggcggtg
     1501 cgcaaatctg gttgaagcgc gaagacttga accacaccgg cgcgcacaaa gtcaacaaca
     1561 ccatcggtca ggcactgttg gcaaaacgca tgggtaaaaa acgcgtcatc gccgaaaccg
     1621 gcgcgggtca gcacggcgtg gcgagtgcca ccgttgccgc acgcttcggt atgacttgcg
     1681 acgtgtatat gggcgcggac gacatccaac gccaaatgcc caacgtgttc cgtatgaaat
     1741 tattgggtgc gaacgtggtt ggtgtagaaa gcggcagccg cacgctgaaa gacgcgatga
     1801 acgaagccat gcgcgaatgg gtcgcccgcg tggacgacac gttctacatc atcggtaccg
     1861 ccgccggccc cgcgccgtat cccgaaatgg tgcgcgattt ccaatgcgtg attggcaacg
     1921 aagctaaagc gcagatgcag gaagccatcg gcagacagcc cgacgttgcc gttgcctgcg
     1981 tgggcggcgg atcgaacgcc atcggtttgt tccacccgta tatcggcgaa gaaaacgtgc
     2041 gcctcgtcgg cgtggaggct ggcggtttgg gcgtgaacac ccccgatcac gccgcgccga
     2101 ttacttcggg cgcaccgatt ggcgtattgc acggtttccg cagctatctg atgcaggacg
     2161 aaaacggtca ggttttgggt acgcactctg tttccgcagg cttggattac cccggcatcg
     2221 gcccggaaca cagccatctg cacgacatca agcgcgtcga atacactgtt gccaaagacg
     2281 acgaagcact cgaagccttt gacttgctct gccgcttcga gggcatcatc cccgcgctcg
     2341 aatccagcca cgccgttgct tgggcggtga aaaacgcgcc gaaaatgggc aaagaccaag
     2401 tgattctggt caacctatcc ggtcgtggcg acaaagacat caataccgtc gcgaagctca
     2461 aagggattaa actgtaacct cgtccgtct
//
LOCUS       DAXIFS010000213         2425 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.213, whole genome shotgun sequence.
ACCESSION   DAXIFS010000213 DAXIFS010000000
VERSION     DAXIFS010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.213"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            68..613
                     /locus_tag="ACFOCA_001870"
     CDS             68..613
                     /locus_tag="ACFOCA_001870"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6988527.1"
                     /translation="MGKTVTLTSGHSNTDPGAVNGSDREADLAQDMCNIVAAILRDDY
                     GLTVKTDGTGKGNMPLREAVKLIRGSDVAIEFHTNAAVSKAATGIEALSTVKNKRWCQ
                     VLSKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTT
                     KWGICRAIADAIAMELGAARV"
     gene            610..816
                     /locus_tag="ACFOCA_001871"
     CDS             610..816
                     /locus_tag="ACFOCA_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988528.1"
                     /translation="MNIIGKLKEAASYFLTKLIGENPSNEQVNRALIQMPNVRPIHTY
                     PRPNLRNSGVAAAKRAARKRKNRR"
     gene            819..983
                     /locus_tag="ACFOCA_001872"
     CDS             819..983
                     /locus_tag="ACFOCA_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988529.1"
                     /translation="MGQVAFYEKMIGLWSAKSREASEQADLAAFEFAEGELANYQEML
                     KRHLQTKSVE"
     gene            986..1222
                     /locus_tag="ACFOCA_001873"
     CDS             986..1222
                     /locus_tag="ACFOCA_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988530.1"
                     /translation="MRILDIFKNPATGNVSHSKLWANVACAAGTVKFVMLPDPSAEIW
                     AVYLGIVGGYAVARSLVSVKRQEVENESRETAGE"
     gene            1194..1613
                     /locus_tag="ACFOCA_001874"
     CDS             1194..1613
                     /locus_tag="ACFOCA_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988531.1"
                     /translation="MNLVKLLANNWQPIAIIALVGTLLAVSHHQGYKSAFAKQQAVID
                     KMEKDKAQALLLSAQNYARELEQARAEAKKYEVKAHAVGMALAKKQAEVSRLKTENKK
                     EIENVLTQDRKNAGGGCIDGFGHHGLQLYKRALGYGN"
     gene            1510..1815
                     /locus_tag="ACFOCA_001875"
     CDS             1510..1815
                     /locus_tag="ACFOCA_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988532.1"
                     /translation="MSLLKTVKMQAAVVLTALAITACSSTSAPSATEIKVVEKAVMPT
                     PPAALMVAPVRPNPPKDGKTATLLEHAAEFGGYVAELENQNQAWRDWAGNHSRKVGN"
     gene            complement(1860..2030)
                     /locus_tag="ACFOCA_001876"
     CDS             complement(1860..2030)
                     /locus_tag="ACFOCA_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HFC6988533.1"
                     /translation="MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLL
                     KSTTAATPVKEV"
     gene            2043..2261
                     /locus_tag="ACFOCA_001877"
     CDS             2043..2261
                     /locus_tag="ACFOCA_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988534.1"
                     /translation="MNEYTFSYRFNGKSWSLSIWADNPEEARAKFRAARENAHYDGEV
                     VAKVYTFVNISWVKKLYKRTKYLMGIKE"
BASE COUNT          624 a          555 c          696 g          550 t
ORIGIN      
        1 gcttcgtcgc cttgtcctga tttttgttaa tccactatat gcaatcaata ttttttggag
       61 atgatgaatg ggcaaaaccg taaccttaac ctctggacac agcaacaccg acccgggtgc
      121 ggtcaacggc agcgaccgtg aggcggactt ggcgcaggat atgtgcaata tcgtggctgc
      181 tattttgcgc gatgactacg gtttgactgt taaaaccgac ggcacgggca aaggcaatat
      241 gccgctgcgt gaagcggtca agctgattcg cggctcggat gtggcgattg agtttcacac
      301 caacgctgcc gtcagcaaag cggcgacagg catcgaagcc ttgagtaccg ttaaaaacaa
      361 acgctggtgt caggtgttga gcaaagccgt tgccaagaaa accggctgga aactgcgcgg
      421 cgaagacggc tttaaacccg acaatgcggg ccagcattcg cgcctggctt atgcacaagc
      481 cggcggcatt gtgtttgagc cttttttcat cagcaacgac actgatttgg ccttgtttaa
      541 gacgactaaa tggggcatct gccgcgcgat tgcggacgcg attgcgatgg aattgggggc
      601 ggcaagagta tgaatattat tggtaaattg aaagaagctg cttcctattt tcttacaaaa
      661 ttgattggag aaaatcctag taatgagcag gtaaaccgcg cacttataca gatgccaaat
      721 gttcgtccga tacacaccta tccacgccca aatttaagaa actcaggcgt ggcagccgcg
      781 aaacgcgcgg cgcgcaaacg caagaatcgt cgttaatcat gggacaggtt gcgttttacg
      841 aaaagatgat tgggctgtgg tcggccaaaa gccgtgaggc aagcgaacag gcagacttgg
      901 cggcgtttga atttgcggag ggcgaactgg ccaattatca ggaaatgctg aaacggcacc
      961 tgcaaaccaa aagtgtggaa tagcaatgcg tattttggat atttttaaaa acccagcgac
     1021 aggcaatgtg tcgcactcga aactgtgggc aaacgttgcc tgcgcggcgg ggacggttaa
     1081 gtttgtgatg ctgcccgacc cgtcggcgga gatttgggcg gtgtatttgg gcattgtcgg
     1141 cggctatgcg gtggcgcgtt cgttggtcag cgtcaaacgt caggaggtcg agaatgaatc
     1201 tcgtgaaact gctggcgaat aactggcaac cgattgccat catcgcgctt gtcggcacgc
     1261 tcttggcggt gtcgcaccat caaggctaca agtcggcttt tgcgaagcag caggcggtca
     1321 ttgacaagat ggaaaaagac aaagcgcaag ccctgctgtt gtcggctcaa aactacgccc
     1381 gcgagctgga acaggcgcgt gcggaagcta aaaaatatga agtcaaggcg cacgccgtcg
     1441 gcatggcttt ggcgaaaaaa caggcggaag tcagccgtct gaaaacggaa aataaaaagg
     1501 aaatcgaaaa tgtccttact caagaccgta aaaatgcagg cggcggttgt attgacggct
     1561 ttggccatca cggcttgcag ctctacaagc gcgccctcgg ctacggaaat taaggttgtc
     1621 gaaaaggcgg tcatgccgac accgcctgcc gcattgatgg tcgcgccggt gcgcccgaat
     1681 ccgccgaaag acggcaagac ggccacgctg ttggaacacg ccgccgagtt tggcggctat
     1741 gttgccgaac tggaaaatca aaatcaggct tggcgcgact gggcgggcaa tcactcccgc
     1801 aaagtcggaa actgacaaaa aagcccgcgt agggcgcggg ctgagggtga aagcggattt
     1861 tatacctctt ttacaggggt agcggcggta gtgcttttca gcaaatcgac tgcgtgctga
     1921 cagttttgct tgctggtgta gccttcgccc tgagcgatga tttcatggtt ggctgctttc
     1981 aaacgccaac ggtattcgcc ttttgcgtct ttatagattt caaaatacat aaggtttctc
     2041 ctatgaatga gtacacgttt tcttaccgct ttaacggcaa gtcctggtca ttgagcattt
     2101 gggcggacaa ccctgaagaa gccagggcga aatttcgggc tgcacgagaa aatgcgcact
     2161 atgacggcga agttgtagca aaggtttata catttgtaaa tatttcgtgg gttaagaaat
     2221 tgtacaagcg gacaaaatat ttaatgggta tcaaagaatg acctaccgtg aattagttga
     2281 acgtcagttg gctgtgcgcc atgccgattt ggaattgggc ttaagccgcg cacgcgaaca
     2341 agagccgttt gtcattcatg tttccgatct gttggataag gcaggcattg agtacgcggt
     2401 acgcatggat aaggattttc agacg
//
LOCUS       DAXIFS010000214         2421 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.214, whole genome shotgun sequence.
ACCESSION   DAXIFS010000214 DAXIFS010000000
VERSION     DAXIFS010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.214"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            43..2256
                     /locus_tag="ACFOCA_001878"
     CDS             43..2256
                     /locus_tag="ACFOCA_001878"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6988535.1"
                     /translation="MTAISPIQDTQSATLQELREWFDSYCAALPDNDKKLVLAARSLA
                     EAHYPADAVTPYGEPLSDHFLGAAQMVDELDLLPDAVAATLLADIGRYVPDWNLLVSE
                     RCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIK
                     LAMRTRTLQFLSNVPDNPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE
                     KYREIALLLDEKRTERLEYIENFLNILRTELKKYNIHFEVAGRPKHIYSIYKKMVKKK
                     LSFDGLFDIRAVRILVDTVPECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTV
                     IVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWREN
                     MAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPTGATPIDFAYALHSSIGDRCRGS
                     KVEGQIVPLSTPLENGQRVEIITAKEGHPSVNWLYEGWVKSNKAIGKIRAYIRQQNAD
                     TVREEGRVQLDKQLAKLTPKPNLQELAENLGYKKPEDLYTAVGQGEISNRAIQKACGT
                     LNEPPPVPVSETTIVKQSKIKKGGKNGVLIDGEDGLMTTLAKCCKPAPPDDIVGFVTR
                     DRGISVHRKTCPSFRHLAEHAPEKVLDASWAALQEGQVFAVDIEIRAQDRSGLLRDVS
                     DALARHKLNVTAVQTQSRDLEASMRFTLEVKQVNDLPRVLASLGDVKGVLSVTRL"
BASE COUNT          634 a          771 c          576 g          440 t
ORIGIN      
        1 ctgttacaat aaactcgttt ttatcggaac gaaagaccca tcatgaccgc catcagcccg
       61 attcaagaca cgcaaagcgc gactctgcaa gaattgcgcg aatggttcga cagctactgc
      121 gccgcgctgc cggacaacga taaaaaactt gtcttagccg cccgttcgct ggcggaagca
      181 cattaccccg ccgatgccgt cacgccgtat ggcgagccgt tgtccgacca cttcctcggc
      241 gcggcacaaa tggtcgacga actcgacctg ctgcccgatg ccgtcgccgc caccctgctt
      301 gccgacatcg gacgctacgt ccccgattgg aatctattgg tttccgaacg ctgcaacagc
      361 accgtcgccg agctggtcaa aggtgtggac gaagtgcaga aactcaccca cttcgcccgg
      421 gtggacagcc tcgccacgcc agaagaacgc gcccagcagg cagaaactat gcggaaaatg
      481 ctgctggcga tggttaccga catccgcgtc gtgttaatca aactggcgat gcgtacgcgc
      541 accctgcaat tcttaagcaa cgttcccgac aatcctgaaa agcgcgccgt tgctaaagaa
      601 accctcgaca tttttgcccc actcgccaac cgcttgggcg tgtggcaact caaatggcag
      661 ctcgaagatt tgggcttccg tcatcaagag ccggaaaaat accgcgaaat cgccctgctt
      721 ttggacgaaa aacgcaccga gcgcctcgaa tacatcgaaa acttcctcaa tatcctgcgt
      781 acggaactca aaaaatacaa tatccacttt gaagtcgccg gccgcccgaa acacatctac
      841 tccatttaca aaaaaatggt gaagaaaaaa ctcagcttcg acggcctctt tgacatccgc
      901 gccgtgcgga ttctggttga taccgtcccc gagtgttaca ccacgctggg cattgtccac
      961 agcctttggc agcctatccc cggcgagttc gacgactaca tcgccaaccc gaaaggcaac
     1021 ggctataaaa gtttgcacac cgtcatcgtc ggtcccgaag acaaaggtgt ggaagtgcaa
     1081 atccgcacct tcgatatgca ccaattcaac gaattcggtg tcgccgccca ctggcgttac
     1141 aaagaaggcg gcaaaggcga ttccgcctac gagcaaaaaa tcgcctggtt gcgccaactt
     1201 ttggactggc gcgaaaatat ggcggaaagc ggcaaggaag acctcgccgc cgccttcaaa
     1261 accgagcttt tcaacgacac gatttatgtc ctgaccccgc acggcaaagt cctctccctg
     1321 cccacgggcg cgacccccat cgacttcgcc tacgccctgc acagcagcat cggcgaccgt
     1381 tgccgcggtt cgaaagtcga agggcagatt gtgccgctgt ccaccccgct cgaaaacgga
     1441 cagcgcgtcg aaatcattac cgccaaagaa gggcatcctt ccgtcaactg gctttacgaa
     1501 ggctgggtca aatccaacaa ggcaatcggc aaaatccgcg cctacatccg ccagcaaaac
     1561 gccgacaccg tgcgcgaaga aggccgcgtc caactcgaca aacagcttgc caaactcacg
     1621 cccaaaccca acctgcaaga gcttgccgaa aatctcggct acaaaaagcc agaagacctc
     1681 tacaccgccg tcggacaagg cgaaatttcc aaccgcgcca tccaaaaagc ctgcggcacg
     1741 ctgaacgaac cgccgcccgt acccgtcagc gaaaccacca tcgtcaaaca gtccaaaatc
     1801 aaaaaaggcg gcaaaaacgg cgtgctcatc gacggcgaag acggtctgat gaccacgctt
     1861 gccaaatgct gcaaacccgc gccgcccgac gacattgtcg gcttcgttac ccgcgatcgc
     1921 ggcatttcgg tacaccgcaa aacctgcccc tctttccgac acctcgccga acacgcgccc
     1981 gaaaaagtac tggacgcaag ttgggcggcg ttgcaggaag gacaagtgtt cgccgtcgat
     2041 atcgaaatcc gcgcccaaga ccgctccggg cttttgcgcg acgtatccga cgcgctcgcc
     2101 cgccacaaac tcaacgttac cgccgtgcaa acccagtccc gcgacttgga agccagtatg
     2161 cggttcacgc tcgaagtcaa acaggtcaac gacctcccgc gcgtcctcgc cagcctcggc
     2221 gacgtcaaag gcgtattgag cgttacccgg ctttaaatac aaaaatgccg tctgaaagcc
     2281 gtataacgct tcagacggca ttttgattga cggggtttgc tattttttgt tgcatagtca
     2341 attaaaaaca aaatagtaca atactcaact ttgaaggtct aaccatggca tactctgcgg
     2401 acttaagaaa caaagcttta a
//
LOCUS       DAXIFS010000215         2417 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.215, whole genome shotgun sequence.
ACCESSION   DAXIFS010000215 DAXIFS010000000
VERSION     DAXIFS010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.215"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            97..903
                     /locus_tag="ACFOCA_001879"
     CDS             97..903
                     /locus_tag="ACFOCA_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HFC6988536.1"
                     /translation="MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGE
                     FPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQ
                     PTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEI
                     VPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDST
                     DDKGEVDIIPLRQGFWKANVEHKADFPDQSVCQKQANYSTLTFQIGHSHH"
     gene            complement(961..2226)
                     /locus_tag="ACFOCA_001880"
     CDS             complement(961..2226)
                     /locus_tag="ACFOCA_001880"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HFC6988537.1"
                     /translation="MSEALAKETLNPFEIARKQVKTACDRLKTDPAVYEILKSPTRVL
                     EVNFPVKLDDGTVKTFTGYRSQHNNAVGPYKGGVRFHPGVNLDEVKALSIWMTIKCCV
                     AGIPYGGGKGGVTLNPRDYSEAELERIARAYSEAISPLIGEKIDIPAPDVNTNGKIMS
                     WMVDAYENVVKHSAPGVFTGKPVEFGGSLARTEATGYGVNLAAVQALEKLGKDVKGAT
                     YAIQGFGNVGYHTGYYAHQSGAKVVAVSTVDVAIYNENGLDMEAIIKEFQTKGFITNE
                     AGYGKEITNAELLALEVDVLAPCALENQLTSENAGKVRATIVVEGANGPTTPEADVIL
                     RQNGVLVVPDILANCGGVVVSYFEWVQNLQGYYWEFDEVQEKETVVLRRAFRDIWNLA
                     QEYDVDLRTASYMMSIRRVEKAMKLRGWY"
BASE COUNT          622 a          689 c          565 g          541 t
ORIGIN      
        1 aaagacagtt ttcagacagc aaatccgtct tcacacgata cctattttgt tataacataa
       61 caaaatcttt gacccacacg agacaaaggc tgcaccatga agaaaacatt gacactgctc
      121 gccgtttccg ccctatttgc cacatccgcc cacgcccacc gcgtctgggt cgaaaccgcc
      181 cacacgcacg gcggcgaata ccttaaagcc gacttgggct acggcgaatt tcccgaactc
      241 gaacccatcg ccaaagaccg cctgcacatc ttcagcaaac cgatgcagct ggttaccgaa
      301 aaaggcaagg aaaacatgat tcaacgcggc acatacaact accagtaccg aagcaaccgt
      361 cccgttaagg acggcagtta cctcgtcatc gccgaatatc agcctacttt ctggtcaaaa
      421 aacaaagcag gctggaaaca ggcgggcatc aaagaaatgc ctgacgcaag ctattgcgaa
      481 caaacccgaa tgttcggcaa aaacatcgtc aacgtcggac acgaaagcgc ggacaccgcc
      541 atcatcacca aaccggtcgg acaaaacttg gaaatcgtcc cgctggacaa tcccgccaac
      601 attcacgtag gcgaacgctt caaagtccgc gttctgttcc gtggcgaacc gctgcccaat
      661 gccaccgtta ccgccacctt tgacggcttc gacaccagcg accgcagcaa aacgcacaaa
      721 accgaagcac aggctttctc cgacagcaca gacgacaaag gcgaagtgga catcatcccc
      781 ttgcgccaag gcttctggaa agccaatgtc gaacacaaag ccgacttccc cgatcaaagc
      841 gtgtgccaaa aacaggcgaa ctactcgact ttaaccttcc aaatcggcca ttcgcaccat
      901 taatcccgcc cgcacaaaaa tgccgtctga aggcttcaga cggcattttt tgttcaaaca
      961 tcaataccaa ccgcgcagtt tcatcgcttt ttcaacacgg cggatactca tcatgtaaga
     1021 cgcggttcgc aaatcgacat catactcttg cgccaagttc catatatcgc ggaacgcacg
     1081 gcgcaggacg acggtttctt tttcctgaac ttcgtcaaac tcccaataat agccttgcag
     1141 attttgtacc cattcaaaat aagataccac cacgccgccg cagttcgcca aaatatcggg
     1201 cacgaccaat acgccgtttt gacgcaggat aacgtcggct tcgggcgtag tcgggccgtt
     1261 cgcgccttcg accacgattg tcgcgcggac tttaccggca ttttcagaag tcagttggtt
     1321 ttccagtgcg caaggggcaa gtacgtccac ttccagagcc aaaagttcgg cgttggtaat
     1381 ttccttgccg tagccggctt cattggtgat gaaacctttg gtttggaatt ctttgatgat
     1441 tgcttccata tccaagccgt tttcgttgta aatggcaacg tcaacagtag aaaccgcaac
     1501 aactttcgcg ccggattgat gcgcgtaata acctgtgtgg taaccgacat taccgaagcc
     1561 ttggatggcg taagtggcac ccttcacgtc tttgcccagt ttttccaagg cttggacggc
     1621 ggcgaggttc acgccgtaac cggtagcctc ggtacgcgcc aaagagccgc cgaactcaac
     1681 cggtttaccg gtaaatacgc ccggtgcaga atgtttcacc acgttttcat aggcatcaac
     1741 catccaagac atgattttgc cgttggtgtt cacatcaggt gcgggaatat cgattttctc
     1801 gccgatcagc ggagaaatgg cttcggaata agcgcgggcg atgcgttcca gttccgcctc
     1861 ggaataatcg cgcggattca aggtaacgcc gcctttgccg ccgccgtaag gaatacccgc
     1921 aacgcagcat ttgatggtca tccaaatcga cagggctttg acttcgtcca gattcactcc
     1981 gggatggaag cgcacgccgc ctttataggg gccgacggcg ttgttgtgtt gcgaacggta
     2041 gcccgtgaag gttttgaccg tgccgtcgtc gagtttgacg gggaaattga cttccaacac
     2101 gcgggtcgga ctcttcagga tttcataaac ggccggatcg gttttcagcc ggtcgcaggc
     2161 ggttttgacc tgtttgcgcg cgatttcaaa cggattgagg gtttcttttg caagggcttc
     2221 agacattttg cttccttttc acaaaaagat tttcaggggc gtgcatttcg ctcattacta
     2281 taaccaattt cccgacaaaa tgtaatagcg tgtagtcggc ataagcccga tttgattaat
     2341 ctatatatga ttttattttt caagccgcac ggaatcagcc cggactccgc ctgaaaaagc
     2401 agcgcgcgcg tccgaaa
//
LOCUS       DAXIFS010000216         2417 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.216, whole genome shotgun sequence.
ACCESSION   DAXIFS010000216 DAXIFS010000000
VERSION     DAXIFS010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.216"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..529
                     /locus_tag="ACFOCA_001881"
     CDS             <1..529
                     /locus_tag="ACFOCA_001881"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6988538.1"
                     /translation="ETADLRAKYGFADHETVFLFPSTGHTRKGLELLADFFEHTGLPV
                     KLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLVGVESVLCGTRV
                     VLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLSDPMRALNYNPS
                     LSHHIDRLTDILASV"
     gene            complement(596..2248)
                     /locus_tag="ACFOCA_001882"
     CDS             complement(596..2248)
                     /locus_tag="ACFOCA_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFC6988539.1"
                     /translation="MVAYVFLFLFVTAALVLIIRSHYRWTYFFASALFVFLAGGMLML
                     TAQWQRALNFASVWFVVLILFHRLKIHYYKQPLLISDFLLIADWRNWETLFHYKEAVI
                     GMAGLLALAAYAVFGWSGADSLGVPWRWAGAALFAAAFVSMWYFSKHPGAVKTWLDSL
                     PDDGRDVFLNLPMSCRAVFFQVPVFEGDGEAFAKQMPSETQPCGMSDEKPDIVVTLME
                     STLDPHCFDFAAAKIPDLKMFGRQEDTVFSSPLRVHTFGGATWKSEFAFLAGVPSTDF
                     GALASGVFYSVVPHLQTGLVRNLREHGYFCVALSPFTKGNYNAKAAYDHFGFNLMFQP
                     QDLGYPAPMGKNLWHISSEEMMQYARMILEKRHPDLENVRQPMFVYVLTMKEHGPYRT
                     DTDNVFDLDAPDLNAKTVSALNDYIGRIADLDKAVESFDRYLHERGKPFVFGYFGDHQ
                     VPFEGVSVRKKWDYAQPDYVTQFAVRSNIAGGFVQRQDFLDLAFAGGVLMEAAGLEAK
                     DGFMRANMAMRGLCGGGLEDCPNRKLVGDYRNYLYDVLKIAS"
BASE COUNT          635 a          749 c          555 g          478 t
ORIGIN      
        1 agaaactgcc gacctgcgcg ccaaatacgg ctttgccgac catgaaaccg ttttcctgtt
       61 cccatcgacc ggccacacgc gcaaaggtct ggaactgctt gccgactttt tcgaacatac
      121 cggcctgccc gtcaagcttg ccgttgtcgg ctccccgctc ccccgcccta tgaaaaacgt
      181 cgtcggactg ggcttctgca ccgatatgcc cgaactctac cgcgccgccg actttaccat
      241 tatggcctcc ctgtatgaac ccttcgggct ggtcggtgtc gaatccgtcc tatgcggcac
      301 acgcgtcgtc ctctccgaaa acatggcatg tacagaggtc atgaacgaag aagccggatt
      361 ctttttctca cgccaaaacc cggaaaccct ggcgcaagcc gttgcccaag ccgtcagcct
      421 taaaaaacag ggcggacacc gcctgtccga cccgatgcgt gcactgaact acaacccgtc
      481 cctgtcgcac cacatcgacc gactgaccga catactggca tccgtataac aaaatgccgt
      541 ctgaacgagt tttcagacgg catttttgca accgttgcag ccgtgcggca aaaagctaac
      601 tggcaatttt caaaacgtcg tacagatagt tccgatagtc tccgaccagt ttccggttcg
      661 ggcagtcttc caaccctccg ccgcacaaac cgcgcatcgc catattcgca cgcatgaagc
      721 cgtctttggc ttccagacca gccgcctcca tcagcacgcc gcctgcaaag gcaaggtcga
      781 ggaaatcctg ccgctgtacg aatccgccgg caatattgct cctgacggca aactgcgtta
      841 cataatccgg ctgcgcgtaa tcccatttct tcctgacgga cacgccctca aacggtacct
      901 gatgatcgcc gaaataaccg aaaacaaagg gtttgccgcg ttcgtgcaga taacggtcga
      961 aactttccac cgctttgtcc aaatcggcaa tgcgcccgat gtagtcgtta agcgcggata
     1021 cggttttcgc attcaaatca ggtgcatcca aatcaaacac attgtcggta tccgtccgat
     1081 acggcccgtg ctccttcatg gtcagcacat atacgaacat cggctgccgc acgttttcca
     1141 aatcgggatg gcgtttttcc aaaatcatcc gcgcatactg catcatttcc tcactggaaa
     1201 tatgccacag gtttttgccc atcggcgcgg gatagcccaa atcttgcggc tggaacatca
     1261 gattaaagcc gaaatggtca tatgctgcct tggcattgta gttgcccttg gtaaacggcg
     1321 agagtgccac gcaaaaataa ccgtgttcgc gcaggttgcg gaccaaaccg gtctgcaaat
     1381 gcggcacgac cgagtaaaac acgccacttg ccaacgcgcc gaaatccgtg gacggaacac
     1441 ccgccaaaaa cgcaaattcg gacttccacg ttgcgccgcc gaaagtatgc acgcgcaaag
     1501 gtgaggaaaa tacggtatct tcctgccgcc cgaacatttt caaatcggga atcttggcgg
     1561 cagcaaagtc gaaacagtgc ggatcgagcg tcgattccat cagggtaacg acaatatcgg
     1621 gtttttcatc cgacatgccg cacggctggg tttcagacgg catctgttta gcaaacgctt
     1681 ccccgtcgcc ctcgaacacg ggtacttgga aaaacaccgc ccgacaggac atcggcaggt
     1741 tcaaaaacac gtcgcgcccg tcgtccggca gcgagtccag ccacgtcttt accgcgcccg
     1801 gatgtttgga aaaataccac atcgacacga acgccgccgc aaacaacgcc gcgcccgccc
     1861 accgccacgg cacacccaaa gaatccgcac cgctccagcc gaaaaccgca tatgccgcca
     1921 aagccagcag ccccgccata ccgataaccg cttccttata atgaaacagc gtttcccaat
     1981 tccgccagtc ggcaatcagc aaaaagtcgg aaatcaacag cggctgtttg taataatgga
     2041 ttttcagcct gtggaacagt atcagcacca caaaccagac cgaagcgaaa ttcaaggcgc
     2101 gctgccactg agccgtcaac atcagcatac cgcccgccaa aaagacaaac agcgcggatg
     2161 cgaaaaaata cgtccagcgg tagtgcgacc tgataatcag caccaacgcc gccgttacaa
     2221 acaaaaatag gaaaacatag gcaaccatcc cgtcccactc ctcaaaacgg catacctgag
     2281 ccgttgcgaa ttattatcga aagtgtgcat tataatgcag cacaggcgca tcactgccga
     2341 tatttcagta taattattcg agatggaatc actgaaaatg gtgaagttac aatgagccct
     2401 tttagaggaa ctaaaaa
//
LOCUS       DAXIFS010000217         2398 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.217, whole genome shotgun sequence.
ACCESSION   DAXIFS010000217 DAXIFS010000000
VERSION     DAXIFS010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.217"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..1574)
                     /locus_tag="ACFOCA_001883"
     CDS             complement(<1..1574)
                     /locus_tag="ACFOCA_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HFC6988540.1"
                     /translation="MRSAVLFIYFFLLNIFLFQPAVIHIQSNYILFMSIVSAPLPALS
                     ALIILAHYHGIAANPADIQHEFCTSAQSDLNETQWLLAAKSLGLKAKVVRQPIKRLAM
                     ATLPALVWCDDGNHFILAKTDGEGEHAQFLIQDLVTNKSAVLSFAEFSNRYSGKLILV
                     ASRASVLGSLAKFDFTWFIPAVIKYRRLFFEVLVVSVVLQLFALITPLFFQVVMDKVL
                     VHRGFSTLDVVSVALLVVSLFEIVLGGLRTYLFAHTTSRIDVELGARLFRHLLSLPLS
                     YFEHRRVGDTVARVRELEQIRNFLTGQALTSVLDLAFSFIFLAVMWYYSSTLTWVVLA
                     SLPAYAFWSAFISPILRTRLNDKFARNADNQSFLVESITAVGTVKAMAVEPQMTQRWD
                     NQLAAYVASGFRVTKLAVVGQQGVQLIQKLVTVATLWIGARLVIEGKLTVGQLIAFNM
                     LSGQVAAPVIRLAQLWQDFQQVGISVARLGDILNAPTENASSHLALPDIRGEITFEHV
                     DFRYKADGRLILQDLNL"
     gene            complement(2279..>2398)
                     /locus_tag="ACFOCA_001884"
     CDS             complement(2279..>2398)
                     /locus_tag="ACFOCA_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6988541.1"
                     /translation="KYNEIDRKSFPLFLKECKFRFNFGTPSRQLKILRDWCGI"
BASE COUNT          744 a          608 c          520 g          526 t
ORIGIN      
        1 aggttcaaat cctgcaaaat cagcctgccg tccgccttat agcggaaatc gacatgttcg
       61 aacgtaatct ccccccggat atcgggcaaa gccaaatgcg aagacgcatt ctcggtcggc
      121 gcattcagaa tatcccccaa acgcgccacc gaaatcccca cctgctggaa atcctgccac
      181 aactgcgcca aacggataac aggcgccgcc acctgtcccg agagcatatt aaacgcaatc
      241 agctgcccca ccgtcagctt gccctcaatt accagccgtg cgccaatcca caacgtcgcc
      301 accgtcacca gcttctgaat cagctgcacc ccctgctggc cgaccaccgc caacttcgtt
      361 acccgaaatc ccgaagccac ataagccgcc aactgattgt cccaacgctg cgtcatctgc
      421 ggctccaccg ccatcgcctt taccgtaccc accgcagtga tgctttctac taaaaacgac
      481 tggttgtctg cattgcgcgc gaacttatcg ttcagacgcg tccgcagtat cggactgata
      541 aatgccgacc aaaacgcata ggcaggcaac gaagccaata ccacccaagt cagagtggag
      601 ctgtaatacc acatcaccgc cagaaagata aacgaaaacg ccaaatccaa caccgaagtc
      661 agcgcctgac cggtcaagaa attgcgaatc tgctccaatt cccgcacccg agccaccgta
      721 tcacccactc gtctgtgctc gaaataggat aaaggcaggg aaagcagatg ccggaacaaa
      781 cgcgcgccca attccacatc aatacgtgaa gtcgtatgtg caaacagata cgtccgcaaa
      841 ccgcccaaca caatctcaaa cagcgacacc accaacaaag ccaccgacac cacatccaaa
      901 gtagagaatc cccgatgtac cagcaccttg tccatcacca cttggaaaaa cagaggcgta
      961 atcagcgcaa acagctgcaa caccaccgac accaccaata cttcaaaaaa caaccggcgg
     1021 tatttgatta ccgccggaat aaaccaggta aagtcaaact ttgccaaact gcccaatacc
     1081 gaagcgcggg aagcaaccaa tatcagtttg cccgaatatc tgttagaaaa ttcggcaaaa
     1141 gacaataccg cagacttatt cgtaaccaaa tcctgtatca aaaattgggc atgctcaccc
     1201 tcaccgtctg ttttggccaa aatgaaatgg ttgccgtcat cacaccatac caatgcgggt
     1261 aaagtcgcca tagccaaacg tttaataggc tggcggacta cctttgcctt caatcccaaa
     1321 gatttggcgg ctaacagcca ttgcgtttca tttaaatcgc tctgtgcgga agtacaaaat
     1381 tcatgctgta tatcggcagg attggcggca atgccgtggt aatgggcgag gatgatgagg
     1441 gcggaaaggg cggggagcgg tgcggatacg atagacataa ataaaatata gttagattgg
     1501 atgtggataa cggctggctg gaaaaggaat atattaagta gaaagaaata tataaataaa
     1561 acagcagaac gcattgtaag gatatatatg ggaattgtaa agagaaagta tggaaaagtt
     1621 ctcgtttcag gaaggtaaaa cggcttagga atcgagttag atgaggatgc ctcgcacctc
     1681 tcgtgcctcc tgcataccgt taaggcacag ggttaaggtg caggctgctc cgaactctgt
     1741 tgcggtcggg taatgttatt ttttgtgttt caggcagcct gaaatatctg tatatttttg
     1801 ttttaaatag attttaaaga ttgataactg ttcttgacga tttttcaaga aaggagtaaa
     1861 tttcaagaaa ggagtaaagt gacttattat caatgacaag caacgcgcga agtgacaagg
     1921 aaaactatct acttaaattc taaggaggct tcgaatatca taaaccaatc agaaacatag
     1981 agataaaaat tatgtacaaa tataatcctc ttatacaatt tattgcacag ttgattatgt
     2041 cttatggagc aagcgtaggg tgggcacttg ctgccccacg cgtttcatat ttcaaggcag
     2101 cctgaaaccg tgtgggcata aatgcctacc ctacatccca aaaaacaagc gcagcctgcg
     2161 tgtgtagggt gcgaactttc ggcaggtaga cacgcggttt tatagtttca agctgagttg
     2221 ggatgcttaa gataaagtac aaaaccttaa aaaataaggg ggctgtacta gattagccct
     2281 aaattccaca ccaatcccgc aaaattttta gctgtcggga cggtgtgccg aagttaaacc
     2341 gaaatttgca ttctttcaag aacagcggga aagatttacg atcaatttcg ttgtattt
//
LOCUS       DAXIFS010000218         2376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.218, whole genome shotgun sequence.
ACCESSION   DAXIFS010000218 DAXIFS010000000
VERSION     DAXIFS010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.218"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            169..792
                     /gene="lolA"
                     /locus_tag="ACFOCA_001885"
     CDS             169..792
                     /gene="lolA"
                     /locus_tag="ACFOCA_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HFC6988542.1"
                     /translation="MMKPHNLFQFLAVCSLTVAVASAQAGAVDALKQFNNDADGISGS
                     FTQTVQSKKKTQTAHGTFKILRPGLFKWEYTKPYRQTIVGDGQTVWLYDVDLAQVTKS
                     SQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKG
                     GNLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTPPKGVDVLSN"
     gene            1065..2204
                     /locus_tag="ACFOCA_001886"
     CDS             1065..2204
                     /locus_tag="ACFOCA_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6988543.1"
                     /translation="MKKTLVAAAILSLALTACGGGSDTAAQTPSAKPEAEQSGKLNIY
                     NWSDYVDPETVAAFEQETGIKTRSDYYDSNETLEAKVLTGKSGYDLTAPSIANVGRQI
                     KAGAYQKIDKAQIPHYGNIDKDLLKMMEAVDPGNEYAVPYFWGINTLAINTRQVQKAL
                     GTDKLPENEWDLVFNPEYTAKLKSCGISYFDSAIEQIPLALHYLGKDPNSENPEDIKA
                     AVDMMKAVRGDVKRFSSSGYIDDMAAGNLCAAIGYGGDLNIAKTRAEEAANGVEIKVL
                     TPKTGVGVWVDSFMIPRDAQNVANAHRYIDYTLRPEVAAKNGSFVTYAPASRPARELM
                     DEKYTSDASIFPNKELMEKSFIVSPKSAESAKLSVKLWQGLKAGK"
BASE COUNT          632 a          720 c          593 g          431 t
ORIGIN      
        1 cgcggcacac attaaagggc agcgtggcgc gcctgccttt tccggtgggc aaaaaatcgg
       61 ccctcggaaa acgctgtttg taaaatgcaa accgcccgta acgccgcccg tatgattgtt
      121 ttgccgcgcc gatactttac gccacactca tcccgacaag gaaaaataat gatgaaaccg
      181 cacaacctgt tccaattcct cgccgtttgc tccctgaccg tcgccgtcgc ttccgcacag
      241 gcgggcgcgg tagacgcgct taagcaattc aacaacgatg ccgacggtat cagcggcagc
      301 ttcacccaaa ccgtccaaag caaaaagaaa acacaaaccg cgcacggcac gttcaaaatc
      361 ctgcgaccgg gccttttcaa atgggaatac accaaacctt acaggcaaac catcgtcggc
      421 gacggtcaaa ccgtttggct ctacgatgtt gatctggcac aagtgaccaa gtcgtcccaa
      481 gaccaggcca taggcggcag ccccgccgcc atcctgtcga acaaaaccgc cctcgaaagc
      541 agctacacgc tgaaagagga cggttcgtcc aacggcatcg attatgtgct ggcaacgccc
      601 aaacgcaaca acgccggcta ccaatacatc cgcatcggct tcaaaggcgg caacctcgcc
      661 gccatgcagc ttaaagacag cttcggcaac caaacctcca tcagtttcgg cggtttgaat
      721 accaatcccc aactctcgcg cggcgcgttc aagtttaccc cgcccaaagg cgtggacgtg
      781 ttgagcaact gatgccgtcc gccccgatgc cgtctgaaag ccgccgaggc ttcagacggc
      841 attttcacgc aggcggaaca atgtcccgca ttaccgcccg atcgggcatc ggaacggcaa
      901 acccgtgaaa attaacggtt gcgccccggt tgtttttgcc gtttaatgca aaccttgctg
      961 catcaagggc caagaaagcc gaccggccgc ccccacagct tccgatgcag gcggccaggc
     1021 cgtccctgca atgtttttta tttttgaacg aaaggtcgaa aaccatgaaa aaaacactgg
     1081 tggcggcggc aatcctgagc ctcgccttga ctgcgtgcgg cggcggaagc gataccgccg
     1141 cccaaacccc ctccgccaag cccgaagccg aacaatcggg caaactcaat atctacaact
     1201 ggtcggatta tgtcgatccc gaaaccgtcg ccgcctttga acaagaaacc ggcatcaaga
     1261 cgcgttccga ttattacgac agcaacgaaa cactggaggc aaaagtcctg accggcaaat
     1321 ccggctacga cctgaccgcg ccgtccatcg ccaacgtcgg ccggcaaatc aaagcgggcg
     1381 cgtatcagaa aatcgacaag gcgcaaatcc cccattacgg caacatcgat aaagatttgc
     1441 tgaaaatgat ggaagccgtc gatccgggca acgaatacgc cgtcccctat ttctggggca
     1501 tcaacacctt ggcaatcaac acgcggcagg tgcaaaaggc attgggtacg gacaagctgc
     1561 ccgaaaacga atgggatttg gtgttcaacc ccgaatacac cgccaaactc aaatcctgcg
     1621 gcatcagcta tttcgacagc gcaatcgaac agattccctt ggcgttgcac tatttgggca
     1681 aagaccccaa cagtgaaaat cccgaagaca tcaaagccgc cgtcgatatg atgaaagccg
     1741 tccgaggcga cgtgaaacgc ttcagctctt ccggctatat cgacgatatg gcggcgggca
     1801 acctgtgtgc cgccatcggt tacggcggcg atttgaacat tgccaaaacc cgtgccgaag
     1861 aagccgcaaa cggcgtggaa atcaaagtat tgaccccgaa aaccggcgtg ggcgtgtggg
     1921 tggattcctt tatgattccg cgcgacgcgc aaaacgtcgc caacgcccac cgctatatcg
     1981 actacacgct ccggcccgag gtggcggcga aaaacggcag cttcgttacc tacgcgcccg
     2041 ccagccgtcc cgcgcgcgag ctgatggatg aaaaatacac ctccgacgca tcgattttcc
     2101 cgaacaaaga actgatggaa aaaagtttca tcgtatcgcc caaatccgca gaatccgcca
     2161 aactgagcgt gaagctgtgg caagggctca aggccggaaa ataaccgcaa cccctgccgt
     2221 ctgaaacctt tcgggcggca ggaaacggcg cgtccgttat caaacagggg gggcgtttcc
     2281 cctcctgccg gttatgattg ggttaagatt aaaatgattt agtaaaatga gaaagatatg
     2341 aatttaagta tcgtagttcc catttataat gtcgaa
//
LOCUS       DAXIFS010000219         2368 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.219, whole genome shotgun sequence.
ACCESSION   DAXIFS010000219 DAXIFS010000000
VERSION     DAXIFS010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.219"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            163..873
                     /locus_tag="ACFOCA_001887"
     CDS             163..873
                     /locus_tag="ACFOCA_001887"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HFC6988544.1"
                     /translation="MNAAIEHVQAVAFDLDGTLCDSVPDLAAAAEAMLEQLGMKPLPA
                     KVVESYVGDGIGKLVHRVLTNDRDREADSELWEKGFVSYMKYYRDHLSVFTRPYPKTE
                     AGLALLKSLGIPLAVVTNKNEILAVELLKQLGLADYFSLILGGDSLPEKKPSPLPLRH
                     AAEVLGIDVANMVMVGDSRNDIIAAKAAGCLSVGVTFGYGDMTLLSQDDATRPDWIIG
                     SLPEIYENLQPQKNKDEE"
     gene            946..1407
                     /gene="recX"
                     /locus_tag="ACFOCA_001888"
     CDS             946..1407
                     /gene="recX"
                     /locus_tag="ACFOCA_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HFC6988545.1"
                     /translation="MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLN
                     EFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQQGIDEETSRNLLPDRSSEKQAA
                     IDVLRKKFKHPAADLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDGC"
     gene            1481..1642
                     /locus_tag="ACFOCA_001889"
     CDS             1481..1642
                     /locus_tag="ACFOCA_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988546.1"
                     /translation="MSEQPEKNHNPLLEDERKNPVYRMGQAVAGFMLVVWVAVLALVF
                     FLVFRFWLS"
     gene            1795..2277
                     /locus_tag="ACFOCA_001890"
     CDS             1795..2277
                     /locus_tag="ACFOCA_001890"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6988547.1"
                     /translation="MTQQRQLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYS
                     CASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNIRTG
                     EIRHTNSCYFTMVAVKDGKPVPVPPLEILTDRQRCRYEKAKKRRDISLQASEDMSCGC
                     "
BASE COUNT          627 a          724 c          532 g          485 t
ORIGIN      
        1 taattggaac atcgctggga tttcaaaccc ttgcccgatt ccgccccgaa atccgaaaac
       61 accgcctgca aaacctgttg cgattgttaa caatctatac attagaagcc ctgtgcaaac
      121 gatgttaaaa taaacccttt caacccgaca ggaaatcaga ttatgaatgc agccatcgaa
      181 cacgtccaag ccgtcgcctt cgatttggac ggcacactgt gcgattccgt ccccgacctt
      241 gccgccgccg cagaagcgat gttggagcaa ctcggtatga aaccgctgcc tgcaaaagtg
      301 gtcgaaagct atgtgggcga cggcatcggc aaactggttc accgcgtcct caccaacgac
      361 cgcgaccgcg aagccgattc cgaactgtgg gaaaaaggtt tcgtatccta tatgaaatac
      421 taccgcgacc atttgagcgt cttcacccgc ccctatccca aaaccgaagc cgggctggca
      481 ttgctcaaat ctttaggcat cccgctcgcc gtcgttacca acaaaaacga aatccttgcc
      541 gtcgaactgt tgaaacagct cggacttgcc gactacttca gcctgatact cggcggcgac
      601 agcctgcccg agaaaaaacc cagccccctg ccgctgcggc atgccgccga agttttgggt
      661 atcgatgttg caaacatggt tatggtcggc gactcgcgca acgacatcat cgccgccaaa
      721 gccgccggct gcctgagcgt cggcgttacc ttcggttacg gcgatatgac gctgctctcg
      781 caagacgatg cgacccgccc cgactggatt atcggctcgc tgcccgaaat ttacgaaaac
      841 ctgcaaccgc agaaaaataa agacgaagaa taaaacaatc tgttcagacg gcatcggaat
      901 ccgtttccca tgccgtctga atctttccgt gccgaaaccg ccgccatgaa accgcaaaaa
      961 tccctacgcg cccgcgcgat ggacatcctc tcgcgccaag aagtcagccg catcggtctg
     1021 aaacgcaaac ttgcaccgca cgccgaaagc gaagaagagt tggaaaacgt gttaaacgaa
     1081 tttgccgaac gcaactggca gtcggatttg cgctatgccg aagcctatat ccgcagcaaa
     1141 agccgcaaac acggttcatt gaggctgaaa caggctttgg cgcaacaggg catagatgaa
     1201 gaaaccagcc gcaacctgct tcccgaccgc tcaagcgaaa aacaggccgc catagacgtg
     1261 ttgcgtaaaa aattcaaaca ccccgccgcc gaccttaaag aaaaacaaaa acaggcgcgt
     1321 ttcctcgcct atcgcggatt cgatgccgat accgttcaga cggcattgaa acacgcttgg
     1381 gacgaaaatt gggaagacgg ctgctgacct tccttcttga atctttttgc acggcaacat
     1441 aaccttacgc ccgtttccaa cttttccgat tgagaacaaa atgtccgaac aacccgaaaa
     1501 aaatcataac cccctccttg aggacgaacg caagaacccc gtgtaccgca tggggcaggc
     1561 agttgccgga ttcatgctcg tcgtttgggt cgccgtattg gcactcgtgt ttttcctggt
     1621 cttccgtttt tggctttcct aaacaaaatg ccgtctgaag gcttcagacg gcatcggcgg
     1681 tccatttcgg cagactatcc catcatagct ttttttagct tgaattccac ttccccattc
     1741 cctaaaattt ccccgcaccc atttcaaaac accctttctt aaaacaggta caccatgaca
     1801 caacaacgcc aactgccttc ccacgaactc attatgtccg aactgatgat gccggacacc
     1861 gccaatttca gcggcaacgt acacggcggc gaactcctgc tcctgctcga ccaagtcgcc
     1921 tattcctgcg ccagccgtta cagcggcaat tattgcgtta ccctgtcggt tgacaaagtc
     1981 ctgtttaaag aacccatcca catcggcgat ttggttacct tttacgccgc tgtcaactac
     2041 acgggacgca cctcgatgga aatcggcatc cgtgtcgaag cacaaaacat ccgcaccggc
     2101 gaaatccgcc acaccaacag ctgctacttc acgatggttg cggtcaaaga cggcaaaccc
     2161 gtccctgtcc ctccgctgga aatcctgacc gaccgccaac gctgccgcta cgaaaaagcc
     2221 aaaaaacgca gagacatcag cctgcaagcc tctgaagaca tgtcctgcgg ctgctgacgg
     2281 cggactatgc cgtctgaaag acaggcacat cgcgccatcc gtttccattg caaacggatg
     2341 aaatcaagca aatatagtgg attaaatt
//
LOCUS       DAXIFS010000220         2347 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.220, whole genome shotgun sequence.
ACCESSION   DAXIFS010000220 DAXIFS010000000
VERSION     DAXIFS010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.220"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            165..650
                     /locus_tag="ACFOCA_001891"
     CDS             165..650
                     /locus_tag="ACFOCA_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988548.1"
                     /translation="MYVNEKYPYAALFAGLVFLTLPFALSVHDALAFAFGRAGLLVSV
                     SDGEFGWRGGWDGTVWFVFGVFAFLNVVVSAGLTKLAYKKMMRRHSRYALFLSGVAAC
                     AAAAVAWIFELLLGSAALGGLRGEAVSEYAFAVWLVSMLTLPKRLTRAPVQPVVFHRK
                     K"
     gene            746..1369
                     /gene="rsmG"
                     /locus_tag="ACFOCA_001892"
     CDS             746..1369
                     /gene="rsmG"
                     /locus_tag="ACFOCA_001892"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFC6988549.1"
                     /translation="MERKERLRAGIAAMGLDISETAQDRLLAYVDLLKKWNKTYNLTA
                     LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
                     KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTGHLLKDG
                     GYWAAMKGVYPQGEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR"
     gene            1468..2241
                     /locus_tag="ACFOCA_001893"
     CDS             1468..2241
                     /locus_tag="ACFOCA_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HFC6988550.1"
                     /translation="MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
                     NATTGSGIDKAGLQSGVYQVLLGDADVKSAAVRGKEGGYAVLGANRALAGAEIELVQE
                     IAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
                     DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNI
                     RLAEAPSHGMPVMAYDAQAKGTKAYLALADELMARVSGK"
BASE COUNT          462 a          537 c          786 g          562 t
ORIGIN      
        1 aatcgaaccc ccgaccttcg cgttacgaat gcgctgctct accgactgag ctacaccggc
       61 ttttttcgtt atgatatata tgaacggttg tttctgcaac ttttcgggct gctggcaaag
      121 ttttgcacgg tataatgcgg tttgcttcgt gaggagagtc ggtgatgtat gtgaacgaga
      181 aatatcccta tgcggctttg tttgcggggc tggtgttttt gacgctgccg ttcgcactgt
      241 cggtgcatga tgccttggca tttgcgttcg gacgggcggg gctgctggtg tcggtgtcgg
      301 acggcgaatt cggctggcgt ggcggttggg acggcactgt ttggtttgtg ttcggtgtgt
      361 ttgcgttttt gaatgtggtt gtgtcggcgg gcctgacgaa actggcgtac aaaaagatga
      421 tgcggcggca ttcgcgttac gcgctgtttc tgtcgggcgt ggcggcttgc gcggctgctg
      481 cggtcgcgtg gattttcgag ctgttgttgg gcagtgccgc cttgggcggg ctgcgcgggg
      541 aggcggtgtc ggaatatgcg tttgccgtgt ggctggtgtc tatgctgacg ctgcccaaac
      601 gcctgacgcg cgcgccggtg cagccggtgg tgtttcacag gaaaaaatag gttggaacgg
      661 gaaatgccgt ctgaaccccg acacgcggtt tcagatggca tgtttttccg ctaacattac
      721 gcctgaatat ggacaggaag cagatatgga acgcaaagaa cgcctgcgtg caggcattgc
      781 cgcgatgggg ctggatattt cggaaacggc gcaggacagg cttttggcct atgtggattt
      841 gttgaaaaag tggaacaaaa cctacaatct gaccgccctg cgcgacgagg aaaaaatgat
      901 tgtccatcat cttttggaca gcctgacgct gctgccccat atcgagggtg tgcaaacgat
      961 gctggatgtc ggttcgggcg gcggtcagcc cggcattccg gcggcggtgt gccgtccgga
     1021 tgtgcagata acccttttgg atgcaaatac gaagaaaacg gcttttttac agcaggcggt
     1081 tatcgagttg gggttggaca atgtgcgcgt ggtatccgga cgcgtggagg cggtttcgga
     1141 cgtgcgtgcc gatgtggtta ccagccgtgc gtttgcagaa ctggcggact ttgtgtcgtg
     1201 gacggggcat ctgttgaaag acggcggata ctgggcggcg atgaagggcg tgtatccgca
     1261 gggggaaatc ggccgcctgc cgcaggatgt gtgcgttgaa aaagtccaaa ggctcgacgt
     1321 gccaggcttg gatgcggaac gccatatcgt catcctgagc aagcgttgag cgcacttcag
     1381 acggcatgaa tacctttttt gtgcggataa aggtaaaatt ccgcactgtt tttctttttt
     1441 caacatcaga cgggacacgg gcgggacatg agtgcgaaca tccttgccat cgccaatcag
     1501 aagggcggtg tgggcaaaac gacgacgacg gtaaatttgg cggcttcgct ggcatcgcgc
     1561 ggcaaacgcg tgctggtggt cgatttggat ccgcagggca atgcgacgac gggcagcggt
     1621 atcgacaagg cgggtttgca gtccggcgtt tatcaggtct tattgggcga tgcggacgtg
     1681 aaatcggcgg cggtacgcgg caaagagggc ggatacgctg tgttgggtgc gaaccgcgca
     1741 cttgccggcg cggaaatcga actggtgcag gaaatcgccc gggaagtgcg tttgaaaaac
     1801 gcactcaagg cagtggcgga agattacgac tttatcctga tcgactgtcc gccttcgctg
     1861 acgctgttga cgcttaacgg cttggtggcg gcgggcggcg tgattgtgcc gatgttgtgc
     1921 gaatattacg cgcttgaggg gatttccgat ttgattgcga ccgtgcgtaa aatccgtcag
     1981 gcggtcaatc ccgatttgga catcacgggc atcgtgcgca cgatgtacga cagccgcagc
     2041 aggctggttg ccgaagtcag cgaacagttg cgcagccatt tcggggattt gctgtttgaa
     2101 accgtcatcc cgcgcaatat ccgccttgcg gaagcaccga gccacggtat gccggtgatg
     2161 gcttacgacg cgcaggcaaa gggtaccaag gcgtatcttg ccttggcgga cgagctgatg
     2221 gcgagggtgt cggggaaata ggtcaatcca aatcgggctg cccgtgcctt tatgctgttt
     2281 ggccgggtgc gttaatatgg cggattaaaa taaaaatact tatatcgtca tttatagtgg
     2341 attaaca
//
LOCUS       DAXIFS010000221         2343 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.221, whole genome shotgun sequence.
ACCESSION   DAXIFS010000221 DAXIFS010000000
VERSION     DAXIFS010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.221"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            27..2177
                     /gene="yccS"
                     /locus_tag="ACFOCA_001894"
     CDS             27..2177
                     /gene="yccS"
                     /locus_tag="ACFOCA_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YccS family putative transporter"
                     /protein_id="HFC6988551.1"
                     /translation="MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
                     AGGLVDLDNRLTGRLKNIITTVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGA
                     VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAILLFQIILPHRP
                     VQENVANAYEALGSYLEAKADFFDPDEAEWIGNRHIDLAMSNTGVITAFNQCRSALFY
                     RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRMLEMQ
                     GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDSNDNPDIRHLRRLLDNLGS
                     VDQQFRQLRHSDSPAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLS
                     LVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
                     YFTPSVETKLWIVIVSTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
                     IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKIAERLKSGETADDVE
                     YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
                     EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQ
                     SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
BASE COUNT          555 a          909 c          470 g          409 t
ORIGIN      
        1 cttcataaca ataaaccggt aaaaccatga aaaccccact cctcaagcct ctgctcatta
       61 cctcgcttcc cgttttcgcc agtgttttta ccgccgcctc catcgtctgg cagctaggcg
      121 aacccaagct cgccatgccc ttcgtactcg gcatcatcgc cggcggcctt gtcgatttgg
      181 acaaccgcct gaccggacgg ctgaaaaaca tcatcaccac cgtcgccctg ttcaccctct
      241 cctcgctcac ggcacaaagc accctcggca cagggctgcc cttcatcctc gccatgaccc
      301 tgatgacctt cggctttacc attttaggcg cggtcgggct gaaataccgc accttcgcct
      361 tcggcgcact cgccgtcgcc acctacacca cacttaccta cacccccgaa acctactggc
      421 tgaccaaccc cttcatgatt ttatgcggca ccgtactgta cagcaccgcc atcctcctgt
      481 tccaaatcat cctgccccac cgccccgttc aagaaaacgt cgccaacgcc tacgaagcgc
      541 tcggcagcta cctcgaagcc aaagccgact ttttcgatcc cgacgaagcc gaatggatag
      601 gcaaccgcca catcgacctc gccatgagca acacaggcgt catcaccgcc ttcaaccaat
      661 gccgttccgc cctgttttac cgccttcgag gcaaacaccg ccacccgcgc accgccaaaa
      721 tgctgcgtta ctactttgcc gcccaagaca tacacgaacg catcagctcc gcccacgtcg
      781 attatcagga aatgtccgaa aaattcaaaa acaccgacat catcttccgc atccaccgca
      841 tgctcgaaat gcagggacaa gcctgccgca acaccgccca agccctgcgc gcaagcaaag
      901 actacgttta cagcaaacgc ctcggccgcg ccatcgaagg ctgccgccag tcgctgcgcc
      961 tcctttcaga cagcaacgac aatcccgaca tccgccacct gcgccgcctt ctcgacaacc
     1021 tcggcagcgt cgaccagcag ttccgccaac tccgacacag cgactccccc gccgaaaacg
     1081 accgcatggg cgacacccgc atcgccgccc tcgaaaccgg cagcctcaaa aacacctggc
     1141 aggcaatccg tccgcagctg aacctcgaat cgggcgtatt ccgccatgcc gtccgcctgt
     1201 ccctcgtcgt tgccgccgcc tgcaccatcg tcgaagccct caacctcaac ctcggctact
     1261 ggatactact gaccgccctt ttcgtctgcc aacccaacta caccgccacc aaaagccgcg
     1321 tccgccagcg catcgccggc accgtactcg gcgtaatcgt cggctcgctc gtcccctact
     1381 tcaccccgtc tgtcgaaacc aagctttgga tcgtcatcgt cagtaccacc ctctttttca
     1441 tgacccgcac ctacaaatac agtttctcca ccttcttcat taccattcaa gccctgacca
     1501 gcctctccct cgcaggtttg gacgtatacg ccgccatgcc cgtacgcatc atcgacacca
     1561 ttatcggcgc atcccttgcc tgggcggcgg tcagctacct gtggcccgac tggaaatacc
     1621 tcacgctcga acgcactgcc gcccttgccg tatgcagcaa cggcgcctat ctcgaaaaaa
     1681 tcgccgaacg cctcaaaagc ggcgaaacgg ccgacgacgt cgaataccgc gccacccgcc
     1741 gccgcgccca cgaacacacc gccgccctca gcagcaccct ttccgacatg agcagcgaac
     1801 ccgcaaaatt cgccgacagc ctgcaacccg gctttaccct gctcaaaacc ggctacgccc
     1861 tgaccggcta catctccgcc ctcggcgcat accgcagcga aatgcacgaa gaatgcagcc
     1921 ccgactttac cgcacagttc cacctcgccg ccgaacacac cgcccacatc ttccaacacc
     1981 tgcccgaaac cgaacccgac gactttcaga cagcactgga tacactgcgc ggcgaactcg
     2041 acaccctccg cacccacagc agcggaacac aaagccacat cctcctccaa cagctccaac
     2101 tcatcgctcg gcagctcgaa ccctactacc gcgcctaccg acaaattccg cacaggcagc
     2161 cccaaaatgc agcctgaaaa agtttcggca ttttgtaaga gagggcagat tgtcagacag
     2221 gttgcaagat agtggataag gctttgcgca gggtaaatgc gtagcaactg aaccgtcatt
     2281 cccacgaacc tacatcccgt cattcccacg aaaacagaaa accaaaatca gaaacctaaa
     2341 atc
//
LOCUS       DAXIFS010000222         2343 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.222, whole genome shotgun sequence.
ACCESSION   DAXIFS010000222 DAXIFS010000000
VERSION     DAXIFS010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.222"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(328..2208)
                     /locus_tag="ACFOCA_001895"
     CDS             complement(328..2208)
                     /locus_tag="ACFOCA_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HFC6988552.1"
                     /translation="MNIFYEESGQFKIAAIIQKNDATYQVDTQHGKRTKVKANNVFAE
                     FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFSAEAIAEEYFGHAPTKTELAATLIA
                     LYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
                     ADLKTILHAPDKQSLTYKAFTKAADALKISAYELAKKTGGITSIPQYLQDGFEIKYFP
                     KGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPS
                     LAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAHRPAVSIYFDVDSE
                     FNTGEPTCKIEAVNISENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAIAL
                     QKARGKYEPDRAPQYDYSIELDEEGNVSIVRRERGSPIDTLVSEMMILANSTWAQMLD
                     ENDLPGLFRVQPAGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
                     TAEPLFQQSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKE
                     DLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGN
                     AV"
BASE COUNT          469 a          563 c          697 g          614 t
ORIGIN      
        1 gtataagttc ccgtgcggac agacctatat tcccacctgc gcgggaatga cgattcagaa
       61 gttacacgaa actcaaaaaa aacgaaaccg aacgaaccgg attcccgctt ttacgggaat
      121 gacggcgcat aagttcccgt gcggacagac ctagattccc acctgcgtgg gaatgacggg
      181 attttagatt gcgggtattt atcgggaacg gcggcttgga agttcattga aacggaaaaa
      241 caacggaaac ccaaaaaacc ggattcccga ctgtgggaat gatgagattc aggtttctgt
      301 ttttgccgga gtttgccgta tcgggcttca gacggcattg cctgccgttg tacccgcggg
      361 tgcgactgcc ttgatgtagt tgagcgagac aaactgcttc tcggcatcca attcggtgat
      421 tttgaacaat gcctgtgatt tgggcagcgc gtcaaacgga ataccggtcg cgcgcgttac
      481 cagcggcagg ccttcaatgc ggacgaggtc ttctttgagg atggtggccg tcagctcgct
      541 cgtgccttgc tgttgcagat agacgaggct ccagtaggct tccatttggc gttggaagtc
      601 ggcgtaggct gtataggcgg catcaaagtc gcgcagcgcg gcgaagagtt cggcatcgct
      661 ttgttggaaa agcggctcgg cggtgtcgtc tatcaggctg atcagttgct tttggttgat
      721 gtagtcggcg gcgcggcgca gcggcgaggt aaaccagccg taatgctgca cgcccattcc
      781 gatgtgcggc tcggatttgg tgctcatacg cactttgcct gccggttgca cgcggaaaag
      841 gccgggcagg tcgttttcat ccaacatttg cgcccaagtg ctgttggcaa gaatcatcat
      901 ctcgctgacc agcgtatcga tgggagaacc gcgttcgcgg cggacgatgg atacgttgcc
      961 ttcctcatcc aattcgatgc tgtaatcgta ttgcggcgca cggtcgggct cgtatttgcc
     1021 gcgtgctttt tgcagggcga tggcgaattg atagaaccaa atcaggtctt gatggtgggc
     1081 gaacatcatt tcgcccgctt cgtccaagcc cgcttcggcg ttgaaatgcg gttcgatggc
     1141 ttggatacgc aggttttcgg agatgttgac cgcttcgatt ttgcaggtcg gttcgccggt
     1201 gttgaactcg ctgtccacat cgaaataaat gctgacggca gggcggtgtg cgcctgcatc
     1261 aaggctgaac gcggcaatcc agttttcggg cagcatcgtg attttgccgc cggggaaata
     1321 aaccgtgctc aagcgttcca tgatgttttt ttccattttg tcgcccggtt taacggcaag
     1381 tgacggcgcg gcgatgtgga tgccgacacg cttcgtgccg ttgtccaagt cggtcaggct
     1441 taaagcgtcg tccacttcgg tggtcgattc gtcgtcaatg gaaaaggcgg taacgtcggc
     1501 cttgggcagg tcgggcattt cgggaagggc aaggtcgggg aagcctgtgc ctttaggaaa
     1561 gtatttgatt tcaaacccgt cttgcaggta ttgcggaatg gacgtaatgc cacccgtttt
     1621 tttcgccaat tcgtaggcgg agattttcag tgcgtcggcg gctttggtaa aggctttgta
     1681 ggtcagcgac tgtttgtcgg gcgcgtgcag gatggttttc aaatccgccg cgatttcaga
     1741 cggcatctcg ccccgtttta aggcttccgc ccaagcgtcg atttgcgcgt cttgctgttt
     1801 tttgcgttcg atggcggcaa gcgcttgttt caaagtttct tcgggcgcgg ctttgaacac
     1861 gcctttggct tttttgtaga aatacatcgg cgcggcgtaa agcgcaatca aggtcgccgc
     1921 cagctcggtt ttggtcggcg catgaccgaa atattcttcg gcgatggctt cggcggaaaa
     1981 ttcttcttcg ccgcatactt cccacaataa atcggtgtcg atgtccgccg cctgtgcctg
     2041 cgcgttttcc aaaaacgccg ccatatcgcc gtcaaactcg gcaaagacat tgtttgcctt
     2101 cactttggtg cgcttgccgt gttgggtatc gacttggtag gtagcgtcgt ttttttggat
     2161 gatggcggcg attttgaatt ggccggactc ttcgtaaaaa atattcattt ttcggatttt
     2221 tctgtggaaa ctcaagcggg cgattttagc agattaccga aaatgccgtc tgaaaaaagg
     2281 ttgggagagg gttggcgcgt ctttgcggtg cttgcgttat agtggattaa caaaaaccag
     2341 tac
//
LOCUS       DAXIFS010000223         2336 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.223, whole genome shotgun sequence.
ACCESSION   DAXIFS010000223 DAXIFS010000000
VERSION     DAXIFS010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.223"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..104)
                     /locus_tag="ACFOCA_001896"
     CDS             complement(<1..104)
                     /locus_tag="ACFOCA_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6988553.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPI"
     gene            548..1354
                     /gene="thiD"
                     /locus_tag="ACFOCA_001897"
     CDS             548..1354
                     /gene="thiD"
                     /locus_tag="ACFOCA_001897"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFC6988554.1"
                     /translation="MKSSFVQTLTIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVT
                     AQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCDFG
                     RRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVHIENRKDAE
                     RAAKILLDYGVKNVVIKGGHLNGSTSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCT
                     FSACITAELAKGSDVCKAVRTAKSYITAAISNPLEIGAGHGPVNHWAYRD"
     gene            complement(1404..1569)
                     /locus_tag="ACFOCA_001898"
                     /pseudo
     CDS             complement(1404..1569)
                     /locus_tag="ACFOCA_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
     gene            complement(1954..2029)
                     /locus_tag="ACFOCA_001899"
     tRNA            complement(1954..2029)
                     /locus_tag="ACFOCA_001899"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1993..1995),aa:Glu,seq:ttc)
     gene            complement(2043..>2336)
                     /locus_tag="ACFOCA_001900"
     CDS             complement(2043..>2336)
                     /locus_tag="ACFOCA_001900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988555.1"
                     /translation="TIRNASDRSGLFSGESAASEHTAHAHIDLPSLAHRVHRRPLRLK
                     IKLPSVVGITTQKNELLDIPMFFICFYIVMRSDKRPPDICLDGIVLLNFYKYV"
BASE COUNT          585 a          592 c          600 g          559 t
ORIGIN      
        1 tcgatcggct gccaatcaat cacctggtcc aacttcaata gcgggaaacg gtcgatgtgt
       61 ttggcaatca tggcttgtgc ggtttgttga aagaaggtgc tcatggaaca tcccctaaat
      121 gtcttggtgg gaatttaggg gattttgggg aattttgcaa aggtttcgat ttggaaatca
      181 cccgaaaccc aaaaacaact gaaaccgaac acactggatt cccgctttcg taggaatgac
      241 ggaattttag gtttctgttt ttgtgggaat gacgaataaa gcgtgccggt ttatgctcgc
      301 cgcaacacgc ggttcagacg gcattgctct cttttttcat tatcagtggg tgtagcaact
      361 gtatttttca ccccgtcggg caaaaataca gttgctacga tgcaccccgc cgccctgccc
      421 tgtgccttgt cctgcaatac ggcatataat gcaccacaaa ccccgcgctg cggttttcag
      481 acggcatcgc cgtgcttttt tacaggcatt agcccttttt atcggacaca atattaagga
      541 ggaacaaatg aaaagctctt ttgtgcaaac gcttaccatc gccggttcgg attcgggcgg
      601 cggtgcgggc attcaggcgg atttgaaaac gtttcagatg cgcggcgtgt tcggaacgtg
      661 cgtcatcacc gccgttaccg cgcaaaatac cttgggcgtg tcggcggttc atctcgtccc
      721 gaccgaaacc atcaccgcac aaatccaagc aatcagggaa gactttgaca tccgcgccta
      781 caaaatagga atgctcggca cggcggaaat catcgaatgc gttgccgaca agctgaaaca
      841 ctgcgacttc ggcaggcgcg tactcgaccc tgtgatgatt gccaaaggcg gtgcgccgct
      901 gttgcaggat tccgccgttg cggcactgac gcgcctgctg cttcccgata cggatgtatt
      961 gacccccaac ctgcccgagg cggaagccct gaccggcgtg catatcgaaa accgtaaaga
     1021 tgcggaacgt gcggcaaaaa tcctgcttga ttacggtgtc aaaaatgtcg ttatcaaagg
     1081 cggacatttg aacggcagca caagcggacg ctgcacggat tggctgttta cgcaaaatga
     1141 aacgctggaa ttggacagcc cgcgctttcc aaccgcccac acgcacggca cgggctgcac
     1201 gttttccgcc tgcatcaccg ccgagttggc aaaaggctcg gacgtttgca aagccgtacg
     1261 gactgccaag tcctacatta cggcggcaat ctcaaaccct ttggaaatcg gcgcgggaca
     1321 cggcccggtc aatcattggg cgtatcggga ctagacgtaa aaatgccgtc tgaaacaaaa
     1381 tgttcagacg gcatttttga ggattattca ggctttttcg ccagcatggt tacaaattta
     1441 aaccgtatcg gattgccgtt ttcgtctttg gcgtgcatcg cgcccaattc ttctttatat
     1501 tcgaccagct cccaatcccg ataataatcc ttcagctccc ccctctttaa atttaaaagg
     1561 gaaaggcatt ttgcaaaggt ctcaggttat aaaagactcg tcattcccac gaaagtggga
     1621 atccagacct gtcggcacgg aaacttattg gataaaacgg tttcttcaac cctacgctct
     1681 agattcccgc ttttgcggga atgacgaagg gtgcgggaat gacgaagttt cagacggcat
     1741 caaatgcctt gtcaggcttt agacggcatc gtccaccctc tgccgtcctt cccgcgtagg
     1801 cgggaatcca gacctgtcgg cacggaagct tatcggataa aacggtttct ttaatcctgc
     1861 gctccagatt cccgctttcg cgggaatgac gaagggtgcg ggaatgacga ttcataataa
     1921 aaaaacctgc ttgaaacaag caggtttttg aattggcacg cccacgggga ttcgaacccc
     1981 ggttgccgcc gtgaaagggc agtgtcctag gcctctagac gatgggcgcg tggaaacgga
     2041 cattatacat acttatagaa atttagcaat acgatgccgt ctaaacaaat gtcagggggg
     2101 cgtttgtctg atcgcatcac aatataaaaa catataaaaa acattggaat atcaagcaat
     2161 tcattttttt gcgtggtaat gccgacaacg gaaggcagct ttattttgag gcgcaaaggt
     2221 cttcgatgca cacgatgcgc cagacttggc aggtcaatat gggcgtgcgc agtatgttct
     2281 gatgcggcgg attcgcctga aaacaagccg gaacggtcag atgcgttccg gattgt
//
LOCUS       DAXIFS010000224         2326 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.224, whole genome shotgun sequence.
ACCESSION   DAXIFS010000224 DAXIFS010000000
VERSION     DAXIFS010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.224"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..438
                     /locus_tag="ACFOCA_001901"
     CDS             <1..438
                     /locus_tag="ACFOCA_001901"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HFC6988556.1"
                     /translation="NGIPNNLLPYICQVAAGKLPQLAVFGDDYPTPDGTGMRDYIHVM
                     DLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAASGLTIPFEIKPRRAGD
                     LACSFADPSHTKQQTGWETKRGLQQMMEDSWRWVSRNPNGYGD"
     gene            439..1521
                     /gene="rfbB"
                     /locus_tag="ACFOCA_001902"
     CDS             439..1521
                     /gene="rfbB"
                     /locus_tag="ACFOCA_001902"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HFC6988557.1"
                     /translation="MQTANKKTILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAG
                     NLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEF
                     IQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYA
                     PSSPYSASKVSSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKP
                     LPVYGDGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLE
                     ELAPEKPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQ
                     WYLDNKTWWQNVLNGSYRLERLGTGK"
     gene            1584..>2326
                     /gene="rfbA"
                     /locus_tag="ACFOCA_001903"
     CDS             1584..>2326
                     /gene="rfbA"
                     /locus_tag="ACFOCA_001903"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HFC6988558.1"
                     /translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
                     CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
                     PQRPKSDWAVTGLYFYDNRAVEFAKQIKPSARGELEITDLNRMYLEDGSLSVQILGRG
                     FAWLDTGTHESLHEAASFVQTVQNIQNLH"
BASE COUNT          569 a          665 c          582 g          510 t
ORIGIN      
        1 aacggcatcc cgaataattt gttgccttat atctgccaag tggcggcagg caaactgccg
       61 caattggcgg tatttggcga tgactaccct acccccgacg gcacggggat gcgtgactat
      121 attcatgtga tggatttggc agaaggccat gtcgcggcta tgcaggcaaa aagtaatgta
      181 gcaggcacgc atttgctgaa cttaggctcc ggccgcgctt cttcggtgtt ggaaatcatc
      241 cgcgcatttg aagcggcttc gggtttaacc attccatttg aaatcaaacc gcgccgcgcc
      301 ggtgatttgg cgtgttcctt tgccgacccg tcccatacca aacaacaaac cggctgggaa
      361 accaaacgcg gcttgcagca aatgatggaa gattcgtggc gttgggtcag ccgcaacccc
      421 aacggatatg gggattaaat gcaaaccgca aacaaaaaaa ccatcctcgt taccggcggt
      481 gcgggcttta tcggttctgc cgttgtccgt catattatcc gaaacaccca agattccgtc
      541 gtcaacctcg acaaactgac ctacgcgggc aatctcgaat cgctgaccga cattgccgat
      601 aatccccgct atgctttcga gcaagtggac atttgcgacc gcgccgaact cgaccgcgta
      661 ttcgcacaac accggcccga tgccgtgatg cacttggcgg cggaaagcca tgtcgaccgc
      721 tctatcggtt cggcaggcga gtttatccaa accaatatcg tcggcacatt caatctgctt
      781 gaagcagccc gcgcctactg gcaacaaatg ccgtctgaac agcacgaagc cttccgtttc
      841 caccatattt ccaccgatga agtctatggc gatttaggcg gcacggacga tttgtttacc
      901 gaaaccgcgc cctacgcgcc gtccagcccc tactctgcct ctaaagtgtc cagcgaccac
      961 ctcgtccgcg cgtggttgcg tacttacggc ttgccgacca ttgtaaccaa ctgctccaac
     1021 aactacggtc cttaccattt tccggaaaaa ctcattcctt tgatgattct gaacgcgctt
     1081 gacggcaaac cgctgcctgt gtacggcgac ggtatgcaaa tccgcgactg gctgtttgtc
     1141 gaagaccacg cgcgcgcact gtatcaggtt gttaccgaag gtgttgtcgg cgaaacctac
     1201 aatatcggcg gccacaatga aaaagccaat attgaagtcg tcaaaaccat ctgcgccctg
     1261 ctggaagaac tcgctcccga aaaaccggcc ggtgtggcgc gttatgaaga tttgattact
     1321 ttcgtacaag accgccccgg ccatgacgta cgctacgccg tcgacgcagc caaaatcagg
     1381 cgggatttgg gctggctgcc tttggaaacc ttcgagtccg gcctccgcaa aaccgtgcaa
     1441 tggtatctgg acaacaaaac ctggtggcaa aatgtattga acggcagcta tcgtttggaa
     1501 cgtttaggta ctggaaaata gttttcagac ggcatcccga cgcaatgccg tctgaaaacc
     1561 catcgcaaag gaagaaaaca aagatgaaag gcatcatact ggcaggcggc agcggcacgc
     1621 gcctctaccc catcacgcgc ggcgtatcca aacagctcct gcccgtgtac gacaaaccga
     1681 tgatttatta ccccttgtcg gttttgatgc tggcgggaat ccgcgatatt ttggtgatta
     1741 ccgcgcctga agacaacgcc tctttcaaac gcctgcttgg cgacggcagc gatttcggca
     1801 tttccatcag ttatgccgtg caacccagtc cggacggctt ggcacaggca tttatcatcg
     1861 gcgaagaatt tatcggcaac gacaatgttt gcttggtttt gggcgacaat attttttacg
     1921 gtcagtcgtt tacgcaaaca ttgaaacagg cggcagcgca aacgcacggc gcaaccgtgt
     1981 ttgcttatca ggtcaaaaac cccgaacgtt tcggcgtggt tgaatttaac gaaaacttcc
     2041 gcgccgtttc catcgaagaa aaaccgcaac ggcccaaatc cgattgggcg gtaaccggct
     2101 tgtacttcta cgacaaccgt gccgtcgagt tcgccaaaca aatcaaaccg tccgcacgcg
     2161 gcgaattgga aattaccgac ctcaaccgga tgtatttgga agacggctcg ctctccgttc
     2221 aaatattggg acgcggtttc gcgtggctgg acaccggtac gcacgaaagc ctgcacgagg
     2281 cggcttcgtt cgtccaaacc gtgcaaaaca tccaaaacct gcacat
//
LOCUS       DAXIFS010000225         2255 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.225, whole genome shotgun sequence.
ACCESSION   DAXIFS010000225 DAXIFS010000000
VERSION     DAXIFS010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.225"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(69..485)
                     /gene="dksA"
                     /locus_tag="ACFOCA_001904"
     CDS             complement(69..485)
                     /gene="dksA"
                     /locus_tag="ACFOCA_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HFC6988559.1"
                     /translation="MAKLTEQDILNWNGPEDDYMNDEHLAFFRELLVKMQDELIENAS
                     ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
                     DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
     gene            complement(632..1441)
                     /gene="proC"
                     /locus_tag="ACFOCA_001905"
     CDS             complement(632..1441)
                     /gene="proC"
                     /locus_tag="ACFOCA_001905"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFC6988560.1"
                     /translation="MNRVEIMNVYFLGGGNMAAAVAGGLVKQGGYRIHIANRGAEKRE
                     RLQKELGVETSETLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLPVDTL
                     SRYIGGTRRIVRVMPNTPGKIGLGVSGMFAEAEVSETDRRIADRIMKSVGLTVWLDDE
                     EKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGE
                     DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ"
     gene            complement(1472..1879)
                     /locus_tag="ACFOCA_001906"
     CDS             complement(1472..1879)
                     /locus_tag="ACFOCA_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HFC6988561.1"
                     /translation="MEIRAIKYTAMAALLAFTVAGCRLAGWYECSSLSGWCKPRKPAA
                     IDFWDIGGESPPSLEDYEIPLSDGNRSVRANEYESAQQSYFYRKIGKFEACGLDWRTR
                     DGKPLIETFKQEGFDCLKKQGLRRNGLSERVRW"
     gene            complement(1879..>2255)
                     /locus_tag="ACFOCA_001907"
     CDS             complement(1879..>2255)
                     /locus_tag="ACFOCA_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFC6988562.1"
                     /translation="KTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPEEAVALAV
                     EVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMGMSDDM
                     PAAIECGATHVRIGSAIFGKRG"
BASE COUNT          506 a          651 c          500 g          598 t
ORIGIN      
        1 gactggtgcg cctttgtgaa tatactgtct gaaacttagg gcttcagacg gcattttgtt
       61 tgccgccatc agtcggcaaa ctgttttttc atcctctctc ggcgttcttg ggactcaaca
      121 gataaagtgg ctgtcgggcg tgccagcagc cgcttcagac cgataggctc tcccgtatcg
      181 gcacagaatc cataatcccc ttcatcaata ttgcggatgg tcgcctgtat tttactgaga
      241 agttttcgtt cccgatcgcg ggtacggagt tccaatgcgt actcttcttc ctgtgtggca
      301 cggtcggcag gatcgggggc tgattcgtgt tcttggagat gccctgtcgt agcggaagca
      361 ttttcgatga gttcgtcttg catttttacc agcaattcgc ggaaaaaagc caaatgctcg
      421 tcattcatat aatcgtcttc cggcccgttc caattcaaaa tatcttgttc tgtcagcttt
      481 gccataatgt atatcctctc ggttcaccga aaaaaacaaa gcaccacaaa gtggctttat
      541 tcctttgatt tttataaggc ttattgccta gggcgttttt gaaaacgcgc atcataacac
      601 gttttggatt ggttttttta ttttctttac attattgata ttgccgttcc atttcctgcg
      661 aacggcgcac acaggcacaa acgccctcgc ttatggcttc ggcgacacga tgccgcctga
      721 aagcttccac ggcttcgtgg gttgtcccgc cttttgacgt tacatttttt tgaagcttct
      781 cgaaatcttc acccgtctgc tcggcaaggg caaccgctcc tttaaacgtt gccagactga
      841 gcgcgcgtgc ttctgccata tcaaaccctt gtcggatggc ggcattttgc aatgcgtcca
      901 gcagataaaa cacataagcc ggtccgctgc cgctgatacc ggtaatgccg tgcatttttt
      961 cctcatcatc caaccaaaca gtcaaaccga ctgatttcat gattcgatcg gcaatcctgc
     1021 ggtctgtttc cgatacttcc gcttcggcaa acataccgga tacgcccagc ccgatttttc
     1081 cgggtgtatt cggcataacc cggacaatgc ggcgtgttcc cccaatgtaa cggctgagcg
     1141 tatcgaccgg caatccggct gcgacagaaa gcaccaatgc gccgttggtg cggatatttt
     1201 tgcacgcggc ttccatatcc tgcggcttga cggcaaggat taaaacatcg tcggaatgaa
     1261 gctccggcaa ggtttcagaa gtttcgaccc ccaactcttt ttgcaaacgt tcgcgctttt
     1321 ccgcaccccg gttggcaata tggatgcggt aaccgccttg tttgaccaat ccgcccgcaa
     1381 cggcagccgc catattgccg ccgccgagaa aataaacatt cattatttct accctattca
     1441 aaattacctg actaaattca ttcccaattt tttaccatcg gacgcgctcg gacagaccgt
     1501 tgcgccgcaa cccctgcttt ttcaaacaat caaaaccttc ctgtttgaac gtctcaatca
     1561 aaggtttgcc gtcacgcgta cgccaatcca acccgcaggc ttcaaacttc cctattttcc
     1621 tgtaaaagta agattgttgt gcggattcat attcgtttgc cctgacggaa cgattgccgt
     1681 ctgaaagcgg tatctcgtag tcctctaaag acggcggact ctcgccgcca atatcccaaa
     1741 aatcgatggc ggcaggtttt ctcggcttac accagccgga cagggacgaa cactcatacc
     1801 aacctgccaa ccggcagcct gcaaccgtaa atgcaagcaa cgcagccatt gccgtatatt
     1861 ttattgcccg aatttccatc agcccctttt cccgaaaatc gcactgccga tacggacatg
     1921 tgttgcaccg cactcaatgg cggcaggcat atcgtccgac atccccatag acagcacgtc
     1981 agccttaacg ccagccgtat tgaggtcggc aagcagtttc cgcatcgttt gaaattgcac
     2041 cttcaactcc gtttcactgc tgttggcttt ggcaacacac atcagtccgc gtacgacgat
     2101 attcggcagc ttcgccactt ccacagcaag cgcgactgct tcttcgggcg cgacaccgtg
     2161 cttcaccgcc tcgcccgcaa tgttcacctc aatacacacc tgcaaaggcg gcattgagga
     2221 aggacgttgc ccgctcagcc ggacagcggt tttca
//
LOCUS       DAXIFS010000226         2207 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.226, whole genome shotgun sequence.
ACCESSION   DAXIFS010000226 DAXIFS010000000
VERSION     DAXIFS010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.226"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..200
                     /locus_tag="ACFOCA_001908"
     CDS             <1..200
                     /locus_tag="ACFOCA_001908"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988563.1"
                     /translation="FLRFHVLDSRLRGNDEILSWGNLSENPQPPKTGRMPHHPPPNPD
                     LTIQTNQKKKQNEQNIPHHLE"
     gene            169..1938
                     /locus_tag="ACFOCA_001909"
     CDS             169..1938
                     /locus_tag="ACFOCA_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HFC6988564.1"
                     /translation="MNKIYRIIWNSALNAWVVVSELTRNHTKRASATVATAVLATLLS
                     ATVQANATDTDEDEELESVVRSALVLQFMIDKEGNGEIESTGDIGWSIYYDDHNTLHG
                     ATVTLKAGDNLKIKQSGKDFTYSLKKELKDLTSVETEKLSFGANGNKVNITSDTKGLN
                     FAKETAGTNGDPTVHLNGIGSTLTDTLAGSSASHVDAGNQSTHYTRAASIKDVLNAGW
                     NIKGVKTGSTTGQSENVDFVRTYDTVEFLSADTKTTTVNVESKDNGKRTEVKIGAKTS
                     VIKEKDGKLVTGKGKGENGSSTDEGEGLVTAKEVIDAVNKAGWRMKTTTANGQTGQAD
                     KFETVTSGTKVTFASGNGTTATVSKDDQGNITVKYDVNVGDALNVNQLQNSGWNLDSK
                     AVAGSSGKVISGNVSPSKGKMDETVNINAGNNIEITRNGKNIDIATSMTPQFSSVSLG
                     AGADAPTLSVDDEGALNVGSKDANKPVRITNVAPGVKEGDVTNVAQLKGVAQNLNNRI
                     DNVDGNARAGIAQAIATAGLAQAYLPGKSMMAIGGGTYRGEAGYAIGYSSISDTGNWV
                     IKGTASGNSRGHFGTSASVGYQW"
     gene            2071..>2207
                     /locus_tag="ACFOCA_001910"
     CDS             2071..>2207
                     /locus_tag="ACFOCA_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6988565.1"
                     /translation="MSTFFQQTAQAMIAKHINRFPLLKLDQVIDWQPIEQYLNRQKTR
                     YL"
BASE COUNT          652 a          535 c          552 g          468 t
ORIGIN      
        1 gtttccttag attccacgtc ctagattccc gccttcgcgg gaatgacgag attttaagtt
       61 gggggaattt atcagaaaac ccccaacccc caaaaaccgg gcggatgccg caccatccgc
      121 ccccaaaccc cgatttaacc attcaaacaa accaaaagaa aaaacaaaat gaacaaaata
      181 taccgcatca tttggaatag tgccctcaat gcctgggtag tcgtatccga gctcacacgc
      241 aaccacacca aacgcgcctc cgcaaccgtg gcgaccgccg tattggcgac actgctgtcc
      301 gcaacggttc aggcgaatgc taccgatacc gatgaagatg aagagttaga atccgtagta
      361 cgctctgctc tggtgttgca attcatgatc gataaagaag gcaatggaga aatcgaatct
      421 acaggagata taggttggag tatatattac gacgatcaca acactctaca cggcgcaacc
      481 gttaccctca aagccggcga caacctgaaa atcaaacaaa gcggcaaaga cttcacctac
      541 tcgctgaaaa aagagctgaa agacctgacc agtgttgaaa ctgaaaaatt atcgtttggc
      601 gcaaacggta ataaagtcaa catcacaagc gacaccaaag gcttgaattt tgcgaaagaa
      661 acggctggga cgaacggcga ccccacggtt catctgaacg gtatcggttc gactttgacc
      721 gatacgcttg cgggttcttc tgcttctcac gttgatgcgg gtaaccaaag tacacattac
      781 actcgtgcag caagtattaa ggatgtgttg aatgcgggtt ggaatattaa gggtgttaaa
      841 actggctcaa caactggtca atcagaaaat gtcgatttcg tccgcactta cgacacagtc
      901 gagttcttga gcgcagatac gaaaacaacg actgttaatg tggaaagcaa agacaacggc
      961 aagagaaccg aagttaaaat cggtgcgaag acttctgtta ttaaagaaaa agacggtaag
     1021 ttggttactg gtaaaggcaa aggcgagaat ggttcttcta cagacgaagg cgaaggctta
     1081 gtgactgcaa aagaagtgat tgatgcagta aacaaggctg gttggagaat gaaaacaaca
     1141 accgctaatg gtcaaacagg tcaagctgac aagtttgaaa ccgttacatc aggcacaaaa
     1201 gtaacctttg ctagtggtaa tggtacaact gcgactgtaa gtaaagatga tcaaggcaac
     1261 atcactgtta agtatgatgt aaatgtcggc gatgccctaa acgtcaatca gctgcaaaac
     1321 agcggttgga atttggattc caaagcggtt gcaggttctt cgggcaaagt catcagcggc
     1381 aatgtttcgc cgagcaaggg aaagatggat gaaaccgtca acattaatgc cggcaacaac
     1441 atcgagatta cccgcaacgg caaaaatatc gacatcgcca cttcgatgac cccgcaattt
     1501 tccagcgttt cgctcggcgc gggggcggat gcgcccactt taagcgtgga tgacgagggc
     1561 gcgttgaatg tcggcagcaa ggatgccaac aaacccgtcc gcattaccaa tgtcgccccg
     1621 ggcgttaaag agggggatgt tacaaacgtc gcacaactta aaggtgtggc gcaaaacttg
     1681 aacaaccgca tcgacaatgt ggacggcaac gcgcgcgcgg gtatcgccca agcgattgca
     1741 accgcaggtt tggctcaggc ctatttgccc ggcaagagta tgatggcgat cggcggcggt
     1801 acttatcgcg gcgaagccgg ttacgccatc ggctactcga gcatttctga cactgggaat
     1861 tgggttatca agggcacggc ttccggcaat tcgcgcggtc atttcggtac ttccgcatct
     1921 gtcggttatc agtggtaagg gctttttcgc ctgtctgctg ttggggcagg cggaaggttt
     1981 gaagggaagg gtggcgattt gccgcctgag acctttgcaa aattccccaa aatcccctaa
     2041 attcccacca agacatttag gggattttcc atgagcacct tcttccagca aaccgcccaa
     2101 gccatgattg ccaaacacat caaccgcttc ccgctattga agttggacca ggtgattgat
     2161 tggcagccga tcgaacagta cctgaaccgt caaaaaaccc gttacct
//
LOCUS       DAXIFS010000227         2188 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.227, whole genome shotgun sequence.
ACCESSION   DAXIFS010000227 DAXIFS010000000
VERSION     DAXIFS010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.227"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            53..547
                     /locus_tag="ACFOCA_001911"
     CDS             53..547
                     /locus_tag="ACFOCA_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988566.1"
                     /translation="MENRFKKIVKDILSFAQFVSEAENKIPNQSSRYYDCWWELEILN
                     ASALEDWEISGKPEKWEKWTEKYQTEALQSVKHLFAEEVPENNIVCDISHFLHFADWA
                     EADIPNQSRLYAEYWWEMEMFKMSVLEDWERSGKPLDWKKWQRQYRSEAFELVKKLNR
                     SKQE"
     gene            667..1800
                     /locus_tag="ACFOCA_001912"
                     /pseudo
     CDS             667..1800
                     /locus_tag="ACFOCA_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231803.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1887..2162)
                     /locus_tag="ACFOCA_001913"
     CDS             complement(1887..2162)
                     /locus_tag="ACFOCA_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988567.1"
                     /translation="MNEGEVVLTPEQIQTLRGYAFRGDTYGGWRYLANLGDRYADDAA
                     AIVGKDTNLNGLNLWMKKGVENLWDDTVGKKTRLMCISVFWIVVFNL"
BASE COUNT          643 a          412 c          548 g          585 t
ORIGIN      
        1 ccgtgtttga tttttgacga cattttcctc attggagggg cggcaattat ttatggaaaa
       61 tagatttaaa aaaatcgtta aggatattct tagttttgcc caatttgttt ccgaagcgga
      121 aaataaaatt cctaaccaat cctctcgtta ttacgattgc tggtgggaat tggaaatctt
      181 gaatgcttcc gcattggaag attgggaaat atcgggaaag cctgaaaaat gggagaaatg
      241 gacagaaaaa tatcagaccg aagcgttaca gtcagtcaag catctatttg ccgaagaagt
      301 tcctgaaaat aatatagttt gcgatatttc tcattttttg cattttgccg attgggcaga
      361 agccgacatt cccaatcaat cacgtttata tgccgaatat tggtgggaaa tggaaatgtt
      421 caaaatgtcg gttttagaag attgggaacg ctcgggaaaa ccgttagatt ggaaaaaatg
      481 gcaaaggcaa tatcgatctg aagcatttga attagttaaa aaattgaacc gaagcaaaca
      541 agagtaacaa gccgcagcct gcataagggt ttttaaagta cggcagcaac cgtagattaa
      601 attaaaaatc aaacaatcaa agctcgtctg atataatcga tatattctgt taaacgaaaa
      661 ataaatatgt ttaaaaaatt caaaccggta ctgttgtcat tttttgcact tgtatttgcc
      721 ttttggctgg gaacgggtat tgcctatgag attaatccgc gttggttttt gagcgatacg
      781 gcaactgaag tacctgaaaa tccgaatgct tttgtggcga aacttgcccg cctgttccga
      841 aatgccgaca gggcggttgt catcgtgaag gaatcgatga ggacggagga aagtcttgcc
      901 gaaactgtgg atgacggtcc gttgcagtcg gagaaggatt atctcgcgct cgctatccgg
      961 ctcagtcgtt tgaaagaaaa ggcgaaatgg tttcacgtaa cggagcagga acatggggaa
     1021 gaggtttggc tggattacta tatcggcgag ggcggtttgg ttgcggtttc gcttttgcaa
     1081 cgctcgccgg aagcgtttgt taatgccgaa tatctgtatc ggaacgatcg tccgttttct
     1141 gtaaatgtgt acggcggaac ggctcacagg gaaaattatg aaacgacagg agaatatcgg
     1201 gttgtttggc aaccggacgg ttcggtattt gatgcggcag ggcgcgggaa aatcggggaa
     1261 gatgtttatg agcattgcct cgggtgttat cagatggccc aggtatattt ggcgaaatac
     1321 cgggatgtcg cgaatgatga gcagaaggtt tgggacttcc gcgaagagag caaccggatt
     1381 gcatcggact cgcgcgatta tgtgttttat cagaatatgc gggaattgat gccccggggg
     1441 atgaaggcaa acagtcttgt ggtcggctat gatgcggatg gtctgccgca gaaagtctat
     1501 tggagtttcg acaatggaaa aaaacgctag agtttcgaat attatttgaa aaacggaaat
     1561 ctttttattg cacaatcttc gacggtagca ttgaaagcgg atggcgtaac ggcggatata
     1621 cagacctatc atgcgcaaca gacgtggtat ttggatggcg ggcggattat ccgcgaagag
     1681 aaacagggag acagactgcc tgattttcct ttgaacttgg aaaatttgga aaaagaggtg
     1741 cgccgttatg cagaggctgc ggcgagacgt tcgggcggca ggcgcgacct ttctcactga
     1801 acgcaaatgc cgtctgaaac cggttttcag acggcattgg agagtcaaac gctttttgca
     1861 atgccgtata tgccgaatcc gattcgctac aaattgaaaa caacaatcca aaaaacggaa
     1921 atacacatta aacgggtctt tttaccgacc gtatcatccc ataggttttc cacacctttt
     1981 ttcatccata aattcaaacc atttaagttt gtatccttac cgacaattgc agcagcatca
     2041 tccgcataac ggtcacccaa attagccaaa taacgccaac cgccataggt atcgccacgg
     2101 aaagcataac cacgcaaggt ttggatttgt tctggtgtta aaacaacttc accctcattc
     2161 ataataagat cctttaaatt atttttta
//
LOCUS       DAXIFS010000228         2170 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.228, whole genome shotgun sequence.
ACCESSION   DAXIFS010000228 DAXIFS010000000
VERSION     DAXIFS010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.228"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            99..1910
                     /gene="typA"
                     /locus_tag="ACFOCA_001914"
     CDS             99..1910
                     /gene="typA"
                     /locus_tag="ACFOCA_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFC6988568.1"
                     /translation="MKQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRANQQVDERVMDS
                     NDLEKERGITILAKNTAIDYEGYHINIVDTPGHADFGGEVERVLGMVDCVVLLVDAQE
                     GPMPQTRFVTKKALALGLKPIVVINKIDKPSARPSWVIDQTFELFDNLGATDEQLDFP
                     IVYASGLSGFAKLEETDESSDMRPLFDTILKHTPAPSGSADEPLQLQISQLDYDNYTG
                     RLGIGRILNGRIKPGQTVAVMNHEQQIAQGRINQLLGFKGLERVPLEEAEAGDIVIIS
                     GIEDIGIGVTITDKDNPKGLPMLSVDEPTLTMDFMVNTSPLAGTEGKFVTSRQIRDRL
                     QKELLTNVALRVEDTADADVFRVSGRGELHLTILLENMRREGYELAVGKPRVVYRDID
                     GQKCEPYENLTVDVPDDNQGAVMEELGRRRGELTNMESDGNGRTRLEYHIPARGLIGF
                     QGEFMTLTRGVGLMSHVFDDYAPVKPDMPGRHNGVLVSQEQGEAVAYALWNLEDRGRM
                     FVSPNDKIYEGMIIGIHSRDNDLVVNPLKGKKLTNIRASGTDEAVRLTTPIKLTLEGA
                     VEFIDDDELVEITPQSIRLRKRYLSELERRRHFKKLD"
     gene            complement(1930..>2170)
                     /locus_tag="ACFOCA_001915"
     CDS             complement(1930..>2170)
                     /locus_tag="ACFOCA_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988569.1"
                     /translation="LPKLVRTQKAYSFKRHCSTCCREAEPDTETRRGDMPLEKWRQFL
                     DWVGKTPSETASRSRKARPNKKCRLNFFQTASSII"
BASE COUNT          544 a          630 c          569 g          427 t
ORIGIN      
        1 gcaagggctt cagacggcat cttcatttcc caaatactgt ccggtaaagc gtggtataat
       61 gcgcagttat ctcttacagt ttttgaaaaa cattaattat gaaacaaatc cgcaacatcg
      121 ccatcatcgc ccacgtcgac cacggcaaaa ccacattggt cgaccaactg ctgcgccaat
      181 ccggcacatt ccgcgccaac cagcaggttg acgagcgcgt gatggacagc aacgacctcg
      241 aaaaagaacg cggcatcacc atcctcgcca aaaacaccgc catcgattac gaaggctacc
      301 acatcaatat cgtcgatacg ccgggacacg ccgacttcgg cggcgaagta gagcgcgttt
      361 tggggatggt ggactgcgtc gtcttgttgg tggacgcgca ggaaggcccg atgccgcaaa
      421 cccgtttcgt gaccaaaaaa gccttggctt tggggctgaa accgattgtc gtcatcaata
      481 aaatcgacaa gccgtctgca cgtccgagct gggttatcga ccaaactttc gagctgttcg
      541 acaacttggg cgcgaccgac gagcagttgg atttcccgat tgtttacgct tcaggtttga
      601 gcggctttgc caagctggaa gaaaccgacg agagcagcga tatgcgcccg ctgttcgaca
      661 ccatcttaaa acacacgccc gcaccgagcg gcagcgcgga cgagccgctg caactgcaaa
      721 tttcccaact cgactacgac aactacaccg gccgcctcgg catcggtcgt atcttgaacg
      781 gacgcatcaa acccggccaa accgttgccg tcatgaacca cgagcagcaa atcgcccaag
      841 gccgcatcaa ccagcttttg ggtttcaaag gcttggaacg cgtaccgctt gaagaagccg
      901 aagccggcga catcgtgatt atttccggta tcgaagacat cggcatcggc gtaaccatca
      961 ccgacaaaga caaccccaaa ggcctgccga tgttgagcgt ggacgaaccg acgctgacga
     1021 tggactttat ggtcaacacc agcccgctgg cgggtacgga aggcaaattc gtaaccagcc
     1081 gccaaatccg cgaccgcctg caaaaagaat tgctgaccaa cgtcgccctg cgcgtggaag
     1141 acaccgccga tgccgacgtg ttccgcgtat ccggacgcgg cgagctgcac ctgaccattt
     1201 tgttggaaaa tatgcgccgc gaaggctacg aactcgccgt cggcaaaccg cgcgtcgtgt
     1261 accgcgacat cgacggtcaa aaatgcgaac cttatgaaaa cctgaccgtg gacgtacccg
     1321 acgacaacca aggcgcggta atggaagaac tcggccgccg ccgtggcgaa ctgactaata
     1381 tggaaagcga cggcaacgga cgcacccgcc tcgaatacca tattccagcg cgcggcttga
     1441 tcggtttcca aggcgaattt atgaccctga cgcgcggggt cgggctgatg agccacgtgt
     1501 tcgacgatta cgcgcccgtc aaacccgata tgcccggccg ccacaacggc gtgctggtgt
     1561 cccaagagca gggcgaggca gtcgcttacg ccttgtggaa tctggaagac cgcggccgta
     1621 tgttcgtatc gcccaacgac aaaatctacg aaggtatgat tatcggcatc cacagtcgcg
     1681 acaacgattt ggtggtcaac ccgctcaaag gcaaaaaact taccaacatc cgtgccagcg
     1741 gtaccgacga agccgttcgc ctgaccacgc cgattaagct gacgctggaa ggtgcggtcg
     1801 agtttatcga cgatgatgag ctggtagaaa tcacgccgca atccatccgc ctgcgcaagc
     1861 gttacctgag cgaattggaa cgccgccgcc atttcaaaaa gctagattga tgtttactgg
     1921 atttaatgtt taaatgatac tcgatgccgt ctgaaaaaag ttcagacggc attttttatt
     1981 cggacgggct ttgcggcttc ttgaagctgt ttcagacggc gtttttccta cccaatcaag
     2041 aaactgccgc catttttcca gcggcatatc gccccgtcgc gtttcggtat cgggttcggc
     2101 ttcccggcag catgtcgaac aatgccgttt gaaggaatac gccttttgag tccttacaag
     2161 cttaggaaga
//
LOCUS       DAXIFS010000229         2151 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.229, whole genome shotgun sequence.
ACCESSION   DAXIFS010000229 DAXIFS010000000
VERSION     DAXIFS010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.229"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(52..807)
                     /locus_tag="ACFOCA_001916"
     CDS             complement(52..807)
                     /locus_tag="ACFOCA_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HFC6988570.1"
                     /translation="MKYVRLFFLGAALAGTQAAAAEMVQIEGGSYRPLYLKKDTGLIK
                     VKPFKLDKYPVTNAEFAEFVNSHPQWQKGRIGSKQAEPAYLKHWMKNGSRSYAPKAGE
                     LKQPVTNVSWFAANAYCAAQGKRLPTIDEWEFAGLASATQKNGSNEPGYNRTILDWYA
                     DGGRKGLHDVGKGRPNYWGVYDMHGLIWEWTEDFNSSLLSSGNANAQMFCSGASIGSS
                     DSSNYAAFLRYGIRTSLQSKYVLHNLGFRCTSR"
     gene            complement(932..2091)
                     /gene="nirK"
                     /locus_tag="ACFOCA_001917"
                     /pseudo
     CDS             complement(932..2091)
                     /gene="nirK"
                     /locus_tag="ACFOCA_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714409.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
BASE COUNT          450 a          521 c          637 g          543 t
ORIGIN      
        1 aggcgaggca acgccgtact ggtttttgtt aatccactat aattgaaggg gttatcggct
       61 tgtgcaacgg aagcccaagt tgtgcaagac atatttggat tgcaggctgg tgcggatgcc
      121 gtagcggagg aaggcggcat agttggacga gtcgctcgac ccgatagacg cgccgctgca
      181 aaacatttgc gcgttggcat tgccggaaga aagcaggctg ctgttgaaat cttccgtcca
      241 ttcccaaatc agcccgtgca tatcataaac gccccagtag ttcgggcggc ctttgccgac
      301 atcgtgcagg cctttccgtc cgccgtcggc ataccaatcg agaatagtgc ggttgtagcc
      361 gggttcgttt gagccgtttt tctgcgtggc ggaagcaagt ccggcaaatt cccattcgtc
      421 aatggtcggc aggcgtttgc cttgtgcggc gcaataggcg ttggcggcaa accaggaaac
      481 atttgttacc ggttgtttta attcgcccgc cttcggcgca tagctgcggc tgccgttttt
      541 catccaatgc ttcaggtaag cgggttctgc ctgtttggaa ccgatcctgc ctttttgcca
      601 ttgggggtgg ctgttgacaa attcggcaaa ctcggcattg gtaacgggat atttatccag
      661 tttgaacggt ttgactttaa tcaggccggt atcttttttc agataaagcg ggcggtagct
      721 gccgccttcg atttgaacca tttcggcagc cgccgcttga gtgccggcga gtgccgcgcc
      781 gaggaaaaat aaccggacat acttcataaa gcctcctgac aggcggttaa aatcaatctt
      841 ccgaaaggaa agattggttg ttaaaaaacc actgccgtgc gtaatgaagt acagcggcag
      901 tggttcgtcc cgctaatgac gggtatccaa tttaataaac gcttttttcg gatgcagagg
      961 ctgccggggc agaagctgcg ggagcggaag cagcaggagc tgcaccgtta ccggcgtaag
     1021 cggtatcact caatttttga gtcatgattt cagggttttc cgcaccctct actttcaatt
     1081 ggcccaacgc gcctttgttg aatgcgcgga agatggagtg gtcgaccaaa gtgtagctgc
     1141 ccgggatgtc gactttgaat tcgacgatgg cggaaccgcc ggcaggaacg atggtgcttt
     1201 gtacgttttc gttaatcagc ttgccgcctt ccacataaac tttgtcgaag atttcgccga
     1261 tgacgtggaa ggaagacact aggttcggac cgccgttacc gacgtacata cgcacggttt
     1321 cgcctgcttt ggctttcagc gcgttatcgc cggcgataga acctacatga ccgttgaata
     1381 cgacgtattc aggctgttcg gcaacggctt tgtccatatc gaacggttgc aggccttgcg
     1441 cgcctttttt gcctttggtg tagaagtcgc cttggacgat gtagaactct ttatccactt
     1501 tcggcagacc ttctttaggc tcgaccaaaa tcagaccgta cataccgttg gcgatgtgca
     1561 taccgaccgg cgcgacggcg cagtggtaga tgtacagacc cggttgcagg gctttgaagc
     1621 tgaatgtgga agtgcggccc ggggcggtaa aggttgcggc tgcaccgccg ccctgaccgg
     1681 ttgcggcgtg gaagtcgacg ttatggggaa cggtagaaga cgggttgttg gaaaattcca
     1741 cttcaaccgt atcgccttcg cgtacgcgga tcatgcgacc cggaacgtcg ccgtcaaatg
     1801 tccagtagcg gtattccaca ccgtcttcca tggtcatggt ttttcgacag tttccatttt
     1861 tacgcggact ttggcaggat agtcgcggtc gattgcggga ggtacttcag gagcgtgggt
     1921 ggtaactgca tcgataacgg gcagttcgcc tgtcggcgtt tcggcggcgg tttgtgcggc
     1981 ggaacttgcg gcttctgcgg aagcggcagg ggcttgcgcg gcaggttcgc cgccgcaggc
     2041 ggctaatgcg aataaggaag caatcattgc agctaaggct tggcgtttca taatgttttc
     2101 cttttgtaag aaaagtagag gaattggtta agaacttggt gtgattatgc g
//
LOCUS       DAXIFS010000230         2137 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.230, whole genome shotgun sequence.
ACCESSION   DAXIFS010000230 DAXIFS010000000
VERSION     DAXIFS010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.230"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..355
                     /locus_tag="ACFOCA_001918"
     CDS             <1..355
                     /locus_tag="ACFOCA_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6988571.1"
                     /translation="ENSFIGKWYDDGVWDDEEYWKLENDLIEVRKKYPYPMDIPRDIV
                     IGIGTIIDFLMVQNWKLFEIKASPWLPKSVKINERYERFRVMLRYIFTDLDVEDWKFF
                     YFPIQNSKGRLRRKV"
     gene            377..754
                     /locus_tag="ACFOCA_001919"
     CDS             377..754
                     /locus_tag="ACFOCA_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6988572.1"
                     /translation="MCEFKDIIRNVPYFEGYDENSFIGKWYDDGVWDDEEYWKLENDL
                     IEVRKKYPYPMDIPRYVVIGIGTIIDFLMVPNWKLFEIKASPWLPDSVGINERYERLK
                     TMLRYIFTEKDIVNVRFDYYNKK"
     gene            796..1068
                     /locus_tag="ACFOCA_001920"
                     /pseudo
     CDS             796..1068
                     /locus_tag="ACFOCA_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951299.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
     gene            1256..1711
                     /locus_tag="ACFOCA_001921"
     CDS             1256..1711
                     /locus_tag="ACFOCA_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988573.1"
                     /translation="MVDAVVKTPEFLPFTSVGIFRFGADITQYKNILETFMYEPPDEF
                     GTEYYESPDSNLLISVEKNKIISIFCYQELYFMGVNIIGLNFEDFKQLFHHPKSYGVD
                     KYYLSNESYPTYVYEFDEIGVQAWEAKGKIVTIIAGGKDNYSTEPYYDE"
     gene            1780..>2137
                     /locus_tag="ACFOCA_001922"
     CDS             1780..>2137
                     /locus_tag="ACFOCA_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6988574.1"
                     /translation="MCEFKDFRRNIPCFEEYDENSFIGKWYDDGVWDDEEYWKLENAL
                     IEVRRKYPYPMDIPRDIVIGIGTIIEFLMVPNWKLFTIKSSPWLPKSVKIDERYERFR
                     VMLRYIFTEIDIVNVRF"
BASE COUNT          737 a          327 c          450 g          623 t
ORIGIN      
        1 cgaaaattca tttattggca aatggtatga tgacggggtg tgggatgatg aagaatattg
       61 gaaattggag aatgatttaa ttgaggttag aaaaaaatat ccttatccga tggatatacc
      121 aagggacatc gtgattggaa tcggtaccat tattgatttt ttaatggttc aaaattggaa
      181 actttttgaa attaaagctt ctccttggtt gcctaaaagt gtcaaaatta atgagcgtta
      241 tgaaaggttc agggtaatgc tccgttatat ttttactgat ctagatgtag aggactggaa
      301 atttttttac tttccaatac aaaatagtaa aggtagattg agacgaaaag tttaattata
      361 ttggagatac attattatgt gtgagttcaa ggatattata agaaacgttc cttattttga
      421 ggggtatgac gaaaattcat ttattggcaa atggtatgat gacggggtgt gggatgatga
      481 agaatattgg aagttggaga atgatttaat cgaggttaga aaaaaatatc cttatccgat
      541 ggacatacca agatatgttg tcattggaat cggtaccatt attgatttct taatggttcc
      601 aaattggaaa ctttttgaaa ttaaagcttc cccttggcta cctgatagcg tgggaattaa
      661 cgaacgttat gaaaggctta aaacaatgct ccgttatatt tttaccgaga aagacatagt
      721 caacgtgcga tttgattatt acaacaaaaa atagcaaaac ccggcaatca aaatgccgtc
      781 tgaagcgata tccggctttc agacggcatc ggcaacagcc aaaccctgat ttccaaccgc
      841 atccactcgt tttattcggg cggcaaatgg attaagacgg aagatttgaa agcgggaatc
      901 aggctgttat ccgaaagcgg caaaacccaa accgtccgca acatcgttgt caaaccaaaa
      961 ccgctcaaag cctacaatct gaccgttgcc gattggcata cctactttgt caaaggcaat
     1021 cgggcggaaa cggaaggagt ttgggttcat aatgcgtgtc cgcccaaaag aacaggaagc
     1081 tccaagaatg aaaaacatgg agacgacggt cgaagtcaaa tatcagcgga atcaagaatt
     1141 gctgaattaa aaaataaaat tattcccgga atgcccaaaa atgaacgctt aaagattgag
     1201 caaaaaatca aaaatattac aaaaaatgcc aatcgaaaag caaaaggaga agagcatggt
     1261 cgacgcggtc gttaaaactc ccgaattttt accttttact tctgtaggaa tattccgttt
     1321 tggtgctgat ataacacagt acaaaaacat actggaaact tttatgtatg aacctcctga
     1381 tgagtttgga acagaatatt atgaatctcc cgactcaaat ttactcattt ccgtcgaaaa
     1441 aaacaaaatt atttcgatat tttgttatca ggagctatat tttatgggcg ttaatataat
     1501 aggtctgaat tttgaagatt ttaaacagct tttccatcac cctaaatcat acggtgttga
     1561 taaatattat ttatcaaatg aatcttatcc gacatatgtc tatgagtttg atgaaatagg
     1621 agtacaagct tgggaagcaa aagggaaaat tgttactatc attgccgggg gcaaagacaa
     1681 ttattcgaca gaaccttact acgatgaata acattacaga aaagaaacaa gaaacggtac
     1741 atttgataaa aacctaaatc gtattggaga ttaattatta tgtgcgagtt caaggatttt
     1801 agaagaaaca tcccttgttt tgaagagtat gacgaaaatt catttattgg caaatggtat
     1861 gatgacgggg tgtgggatga tgaagaatat tggaaattgg agaatgcttt aatcgaggtt
     1921 aggagaaaat atccttatcc gatggatata ccaagggata tcgtgattgg aatcggtacc
     1981 attattgagt ttttaatggt tccaaattgg aaacttttta caattaaatc ttccccttgg
     2041 ttgcctaaaa gtgtcaaaat tgatgagcgt tatgaaaggt tcagagtaat gctccgttat
     2101 atttttaccg agatagacat agtcaacgtg cgatttg
//
LOCUS       DAXIFS010000231         2126 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.231, whole genome shotgun sequence.
ACCESSION   DAXIFS010000231 DAXIFS010000000
VERSION     DAXIFS010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.231"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            375..1832
                     /locus_tag="ACFOCA_001923"
     CDS             375..1832
                     /locus_tag="ACFOCA_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HFC6988575.1"
                     /translation="MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIY
                     LYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVML
                     GHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
                     AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPIVPHPLSK
                     GQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSS
                     DNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSL
                     WVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFIPFISAGTPMPIAVFAL
                     IVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKCYQAG
                     DEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD"
BASE COUNT          505 a          616 c          487 g          518 t
ORIGIN      
        1 tgcagatgcc cgacggtctt tatagcggat taacaaaaat caggacaagg cgacgaagcc
       61 gcagacagta caaatagtac ggcaaggcga ggcaacgccg tactggttta aatttaatcc
      121 actataaaaa accgccctat cggataagcc cttaacagaa aaggctttac ccgcgccgta
      181 tcggaacaca tcctctaaaa tacaatccgt tgaattgaaa aaaatataaa aacatccgcc
      241 cgcgaaaaac ggcagcgcgt cgtttgacaa agaatgaaaa tatcggttaa aaaccgattt
      301 tcatacaaaa aacaccgctg ccgtccgcat ccgtttcaga cggtattgag agaaaatctt
      361 ttaggagaac ctttatgtcc cggcatcccg cccccaccgg agaaaaaaca ttcttcggcc
      421 accccttcca gctttccacc ctcttccata tcgaattgtg ggaacgtttt tcattttacg
      481 gaatgcaggg catcctgctg atttacctct actacaccgc cgacaaaggc ggcttgggca
      541 tagacaaaac cctcgccggc ggcattgtcg gcgcatacag cggcagcgtg tacctgtcca
      601 ccattttggg ggcgtggttt gccgaccgag tatggggtgc ggaaaaaacc ctcttcctct
      661 cgggcatcgt cgtgatgctc ggacacatcg tccttgccgc cgccccgggc ctgtacggcc
      721 ttttaatcgg gctgatattc atcgcattgg gcagcggcgg cgtgaaatct acggccagtt
      781 ctatggtggg cgcattatac gaacaggacg aaatgcgccc gctgcgcgat gcgggatttt
      841 ccattttcta catcgccatc aatatcggcg gcttcctagg cccgctgctg accggcctgc
      901 tgcaggaaaa catcggtttc cattatggtt tcggcgcggc ggcggtcggt atggcattcg
      961 gcttgtggcg ttattccttg ggacgtaaaa acctgcccca tcccatcgtc ccccatccgc
     1021 tttcaaaagg acagggcaaa actgcggccg ccgtcggcat tgctctcatc gccgcacttg
     1081 caaccgccat caaaaccggg cttgtcaacc tcgacaattt ctccggcatc ctcttatcta
     1141 ccgtcatcct tgccgtcatt gcctattttg cccgcctgct gactaatccc cgcgtcagtt
     1201 ccgacaacaa acggcacatc atcgcctaca tcccgctttt cctgaccatc tgtatgtttt
     1261 gggccgtctg gtttcagatt tacaccgtag caaccgtcta tttcgacgaa accgtcaacc
     1321 gcaccatcgg ttcgtttacc gtgcccgtcg cctggaaaga ttctatgcaa agcctgtggg
     1381 tcatcctgtt ttccggactt atggcggcaa tgtggacaaa aatggggcgc aaacagccca
     1441 aaaccccgct gaaattcgct atggcggtat ttgttaccgg cgcgtcgttt ttgggattca
     1501 tcccctttat ttccgccggc acgccgatgc ctattgcggt tttcgcactg attgtccttg
     1561 ccatcacgat aggcgaactg atgatttccc cgattgcgct gtccatctcc accaaaatcg
     1621 caccgccttt attcaaaacc caaatggtcg cccttaattt ccttgccttt tcattaggct
     1681 tcactttggg cggcgtattg tttgaaaaat gctatcaggc gggcgacgaa atcggcttct
     1741 atcggctgct gttctacatc ggcgcagcca caggcttcct gctgctcctg ctcgtcccca
     1801 aattgaacaa aatgctcgaa ggcacagact aagtcccgcc ccgatgccgt ctgaaccctt
     1861 cagacggcat ttttccgcat aatgaaacca aaccgtttcc acccgacagg acaggctccc
     1921 cccaaccgga aggcagcctg ccgattgtca tttaaatatc tgactgattc cgtctgtttg
     1981 caagggaaat agccgtttat ttccgcttgg gcggaaaccg gttctattga gtaaaaggca
     2041 ttttatccga ctaaattagt gctgcatcaa cggaatatat agtggattaa caaaaatcag
     2101 gacaaggcga cgaagccgca gacagt
//
LOCUS       DAXIFS010000232         2123 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.232, whole genome shotgun sequence.
ACCESSION   DAXIFS010000232 DAXIFS010000000
VERSION     DAXIFS010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.232"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            122..1507
                     /locus_tag="ACFOCA_001924"
     CDS             122..1507
                     /locus_tag="ACFOCA_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HFC6988576.1"
                     /translation="MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSL
                     LTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIR
                     MFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFS
                     VMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVP
                     ELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTA
                     KIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGG
                     VLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAA
                     GFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIG
                     FALSALLFSIV"
     gene            1527..2045
                     /locus_tag="ACFOCA_001925"
     CDS             1527..2045
                     /locus_tag="ACFOCA_001925"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase, GntK/IdnK-type"
                     /protein_id="HFC6988577.1"
                     /translation="MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRD
                     KMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAA
                     FIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEA
                     DILNWVASENLL"
BASE COUNT          446 a          645 c          571 g          461 t
ORIGIN      
        1 ttcaaataaa caggaatata acttcagaca aacaacttac cgcccgattt gtgctatcgt
       61 tttcgcacaa cttaaaaaac ctgacaattt tgtactttta ttacagagaa aggctttaca
      121 aatggacggc tggacacaga cgctgtccgc gcaaaccctg ttgggcattt cggcggcggc
      181 aatcatcctc attctgattt taatcgtcaa attccgcatc cacgcgctgc tgacactggt
      241 catcgtcagc ctgctgacgg ctttggcaac cggtttgccc acaggcagca ttgtcaacga
      301 cgtactggtc aaaaacttcg gcggcacgct cggcggcgtg gcgcttctgg tcggcctggg
      361 cgcaatgctc ggacgtttgg tcgaaacatc cggcggcgca cagtcgctgg cggacgcgct
      421 gatccggatg ttcggcgaaa aacgcgcacc gttcgcgctg ggcgttgcct cgctgatttt
      481 cggcttcccg attttcttcg atgccggact aatcgtcatg ctgcccatcg tgttcgccac
      541 cgcacggcgc atgaaacagg acgtactgcc cttcgcgctt gcctccatcg gcgcattttc
      601 cgtcatgcac gtcttcctgc cgccccatcc gggcccgatt gccgcttccg aattttacgg
      661 cgcgaacatc ggccaagttt tgattttggg tctgccgacc gccttcatca catggtattt
      721 cagcggctat atgctcggca aagtgttggg gcgcaccatc catgttcccg ttcccgaact
      781 gctcagcggc ggcacgcaag acaacgacct gccgaaagaa cctgccaaag caggaacggt
      841 cgtcgccatc atgctgattc ccatgctgct gattttcctg aataccggcg tatcggccct
      901 catcagcgaa aaactcgtaa gtgcggacga aacctgggtt cagacggcaa aaataatcgg
      961 ttcgacaccg atcgcccttc tgatttccgt attggtcgca ctgtttgtct tgggacgcaa
     1021 acgcggcgaa agcggcagcg cgttggaaaa aaccgtggac ggcgcactcg cccccgtctg
     1081 ttccgtgatt ctgattaccg gcgcgggcgg tatgttcggc ggcgttttgc gcgcttccgg
     1141 catcggcaag gcactcgccg acagcatggc ggatttgggc attcccgtcc ttttgggctg
     1201 tttccttgtc gccttggcac tgcgtatcgc gcaaggttcg gcaaccgtcg ccctgaccac
     1261 cgctgccgcg ctgatggctc ctgccgttgc cgccgccggc tttaccgact ggcagctcgc
     1321 ctgtatcgta ttggcaacgg cggcaggttc ggtcggttgc agccacttca acgactccgg
     1381 cttctggctg gtcggccgcc tcttggacat ggacgtaccg accacgctga aaacctggac
     1441 ggtcaaccaa accctcatcg cactcatcgg ctttgccttg tccgcactgc tgttctccat
     1501 cgtctgacag acggaaagga tagtaaatga ctacgcattt tgtcgttatg ggcgtatgcg
     1561 gctgcggcaa gaccaccgcc gcgctgtccc tgcagaaaca cctcggtcaa tgtccctatg
     1621 ccgaaggcga cgagttccac acccaagcca accgcgacaa gatgggcgcg ggtattccgc
     1681 tgaccgatga agaccgctat ccgtggttgg gcaatctgcg cgactggatg acgcaacagg
     1741 cgcaaaacgg tgcgaaccac accatcgtaa cctgttccgc cctcaaacgc ggctaccgcg
     1801 acattctgcg cggagccgaa ggcaaagctg ccttcatcca cctcagtccg ccgcaagaca
     1861 tcaacctcga gcgcatgatg tcgcgcaaag gacattatat gaaagcaggg atgctcgatt
     1921 cgcaactgga aatcctcgag gaactgggcg aaggcgaata cggggtcaaa atcgccaacc
     1981 ccggcacgcc cgaagcggtc gaagccgata ttctgaactg ggttgcctcg gaaaacctgc
     2041 tttgaagcaa tatgccgtct gaagcccgac acaggatggg tttcagacgg cataaacatc
     2101 gggaacagaa tggattacat tga
//
LOCUS       DAXIFS010000233         2066 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.233, whole genome shotgun sequence.
ACCESSION   DAXIFS010000233 DAXIFS010000000
VERSION     DAXIFS010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.233"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..870
                     /locus_tag="ACFOCA_001926"
     CDS             <1..870
                     /locus_tag="ACFOCA_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="meta-pathway of phenol degradation family
                     protein"
                     /protein_id="HFC6988578.1"
                     /translation="MKRIFLPALPAILPLSTYADLPLTIEDIMTDKGKWKLETSLTYL
                     NSENSRAELAAPVYIQTGATSFIPIPTEIQENGSNTDMLAGTLGLRYGLTGNTDIYGS
                     GSYLWHEERKLDGNGKTRNKRMSDISAGISHTFLKDDKNPALIGFLESTVYEKSRNKA
                     SSGKSWLIGATTYKAIDPVVLSLTAAYRINGSKTLSSNTKYKAGNYWMLNPNISFAAN
                     DRISLTGGIQWLGKQPDRLDGKKESARNTSTYAHFGAGFGFTKTTALNASARFNVSGQ
                     SSSELKFGVQHTF"
     gene            913..1386
                     /locus_tag="ACFOCA_001927"
     CDS             913..1386
                     /locus_tag="ACFOCA_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988579.1"
                     /translation="MKKQITSAVMMLSMIAPAMANGLDNQAFEKYVFHTQADAPMQLA
                     ELSQKEMKETEGAFLPIVAGALMGGAISAWANHGISKIKTGQFASTRSTLAATAGGMI
                     GGGYSSAMLRGAGITTSVFARSAWKGGNAIPNAVIRANGAALNQSSSAAMGKHRR"
     gene            complement(1848..>2066)
                     /locus_tag="ACFOCA_001928"
     CDS             complement(1848..>2066)
                     /locus_tag="ACFOCA_001928"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988580.1"
                     /translation="FIIPIIYKDLAKIFFDFILGISLIHAKIQPNVEKKITANTTLPP
                     LTSNQTDSRFGWKLVYLLFNGECQCSYP"
BASE COUNT          600 a          463 c          481 g          522 t
ORIGIN      
        1 atgaagcgca tctttttgcc cgccttgccc gccatcctgc ctttatccac ttatgccgac
       61 ctgcccttga cgattgaaga cataatgacc gacaagggca aatggaaact ggaaacttcc
      121 cttacctacc tgaacagcga aaacagccgc gccgaacttg ccgcaccggt ttacattcaa
      181 accggcgcaa cctcgtttat ccccattccg accgaaattc aagaaaacgg cagcaatacc
      241 gatatgctcg ccggcacgct cggtttgcgc tacggactga ccggcaatac cgacatttac
      301 ggcagcggca gctatctgtg gcacgaagaa cgcaaactcg acggcaacgg caaaacccgc
      361 aacaaacgga tgtccgacat atccgccggc atcagccaca ccttcctcaa agacgacaaa
      421 aaccccgccc taatcggctt tcttgaaagc acggtttacg aaaaatcgcg caacaaagcc
      481 tcgtcgggaa aatcgtggct catcggtgcc accacctaca aagccatcga ccccgtcgtc
      541 ctctcattga ctgctgccta ccgtatcaac ggcagcaaaa ccctttcaag caacaccaaa
      601 tacaaagcag gcaattactg gatgctgaat cccaatatat ccttcgccgc caacgacaga
      661 atcagcctca cgggcggcat ccaatggctg ggcaagcagc ccgaccgtct ggacggcaaa
      721 aaagaatccg caagaaacac atccacctat gcccatttcg gcgcaggttt cggtttcacc
      781 aaaaccacgg ctttaaacgc atccgcacgt ttcaacgttt cagggcaaag cagttccgaa
      841 ctgaaatttg gcgtacagca tacattttaa gcaggttttg attttccaac cttgtaatcc
      901 aaaggagtta ttatgaaaaa acaaatcacc tcagccgtaa tgatgctgtc tatgattgcc
      961 cccgcaatgg caaacggatt ggacaatcag gcatttgaaa aatacgtatt ccacacgcag
     1021 gcagatgcgc cgatgcagtt ggcggagctt tctcaaaagg agatgaagga gactgagggg
     1081 gcgtttcttc ctattgtggc aggtgctttg atgggagggg caattagtgc ttgggctaat
     1141 cacggcattt ctaaaattaa aacagggcaa tttgcttcaa caagaagtac cttggctgca
     1201 accgctggtg gtatgatagg aggcggatat agcagtgcga tgttgcgcgg tgcagggatt
     1261 actactagtg tttttgcccg ttctgcttgg aaagggggaa atgctattcc taatgcagtt
     1321 attcgtgcaa atggtgcagc attaaatcag tcttctagcg ccgcaatggg aaaacataga
     1381 agataaacga aatggatgat ctaatactat attttttatc aggtatattc ggaaatcaag
     1441 ttgctgaata tattataaaa aacaaccgtg agataaaagt tccctttatt gtgctttacg
     1501 caatattttt tacgttgatt tatactgtgg ctttgttgtt tctcagtctg atctattggg
     1561 tcaatggtgc ggagattgca tggaagggga taggtatttt cagtatgtcg gtcagttttt
     1621 gtatagtctt ctgtctttat ttgattgaca aggcaggaag atgtaaggat aagaaacaat
     1681 agggatcaga tgcggcggca aacgtagatt gggtctaggc tcaacctgcg tttgctgcat
     1741 ctttggaaga aatagtggat tcgaaaaaat aggaagaatt ctgattaatg gtatgcgagg
     1801 tgtagcaatg ggggctgttg ctggtggcat aaatggttat gcaggttcta cgggtaagaa
     1861 cactgacatt cgccgttaaa taataaataa accaacttcc aaccaaacct gctatcggtt
     1921 tggttggaag tgagaggagg taaggtagtg tttgctgtta ttttcttttc gacattgggc
     1981 tgtattttag catggataag agatattcct aaaataaaat caaaaaaaat tttggcaaga
     2041 tccttatata ttataggaat aataaa
//
LOCUS       DAXIFS010000234         2052 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.234, whole genome shotgun sequence.
ACCESSION   DAXIFS010000234 DAXIFS010000000
VERSION     DAXIFS010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.234"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(14..1852)
                     /gene="glmS"
                     /locus_tag="ACFOCA_001929"
     CDS             complement(14..1852)
                     /gene="glmS"
                     /locus_tag="ACFOCA_001929"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFC6988581.1"
                     /translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGNIK
                     RVRRVGRVQLMEDAAREKHLNGSLGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
                     IENFESERKRLEDLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
                     IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
                     SDGIKRLTDKNGLPAERKVKVSELSLASLELGPYSHFMQKEIHEQPRAIADTAEVFLD
                     GGFIPENFGKNAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPADVEIASEYR
                     YRSVIADPDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
                     YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
                     ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
                     GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATEGVHVI
                     RAPRHVGKLSPVVHTIPVQLLSYHVALARGTDVDKPRNLAKSVTVE"
BASE COUNT          406 a          555 c          619 g          472 t
ORIGIN      
        1 aaacaatccg gacttattcg accgtaacgg atttcgccag gttgcgcggt ttgtctacat
       61 cggtgccgcg tgcgagggcg acatggtagg aaaggagctg cacggggata gtatgcacga
      121 cgggggacag tttgccgacg tggcgcggtg cgcggataac gtgcacacct tcggtggcat
      181 taaaattgct gtcgaggtcg gcaaagacga aaagttcgcc gccgcgcgcg ccgacttcct
      241 gcatattggc tttgactttg tccaacaggc tgtcgttggg tgcgatgacg acgacgggca
      301 tgttttcgtc caccaaggca agcggcccgt gcttcagttc gccggcagga taggcttcgg
      361 cgtggatgta ggtgatttcc ttcagtttta acgcgccttc gagggcaatc gggtaatgga
      421 tgccgcgccc caaaaacagc gcgctggttt tcttggcaaa ctgttgcgcc caggcggcaa
      481 tttgcggttc gaggtttaaa gcgtgctgca cgctgccggg aagctggcgg agttcttcgg
      541 tgtaacgtgc ttcgtcttct tcggaaacca aaccgcgcac tttcgccagc gttaccgcca
      601 aaccgaacag cgcaaccagc tgcgtggtaa atgctttggt tgaggcgacg ccgatttccg
      661 caccggcacg ggtataaagc acgaggctgc tttcgcgcgg cagggcggat tccatcacgt
      721 tgcagatgga gaggctgtgg cggtgtccca aggattttgc gtatttcaac gcctccatcg
      781 tgtccagcgt ttcgccggat tgggaaatgg taatgaccag ttggtccgga tcggcaatca
      841 cgctgcggta tcggtattcg ctggcgattt cgacatcggc cgggattttg gcgatggatt
      901 ccaaccaata tttggcggtc agcgcggcgt aataggacgt gccgcaggca aggattttga
      961 cgctgcggat gctttcaaac acgcttttgg cgtttttgcc gaagttttcg gggatgaagc
     1021 cgccgtcgag gaaaacctcc gccgtgtctg caatcgcgcg cggctgctca tggatttcct
     1081 tttgcataaa gtggctgtac ggtcccagtt ccaaagaggc gagcgagagt tcggatacct
     1141 tgactttgcg ttcggcaggc aggccgtttt tatcggtcag ccttttgatg ccgtctgaag
     1201 ccagcagcgc gatgtcgccg tcttcgaggt acgccacgcg gcgcgtaaag gcgatgacgg
     1261 cggatacgtc cgaagcgata aaggtttcat cgtcgcccaa agcgaccaaa agcgggcagc
     1321 ccatacgcgc cacgactaat tcatcaggct tgtcttgggc aataaccgcg atggcgtatg
     1381 cgccgtggaa acgtttgacc gcttcctgca cggcttcaaa cagcctgccg ccgttttgcg
     1441 cgtattcgtg attgatgctg tgggcgatga cttcggtatc cgtttgcgat tcaaaacggt
     1501 atcccaaatc ttccaaacgt ttgcgttcgc tttcaaagtt ttcgatgatg ccgttgtgca
     1561 cgaccgcaat cataccgccg ctgatgtgcg ggtgggcgtt cggctcggta acgccgccgt
     1621 gtgtcgccca gcgcgtatgc ccgatgccca aactgccgtt caaatgcttt tcacgcgccg
     1681 catcttccat taactgcacg cgcccgacac ggcgcacgcg cttgatgttg ccgtcggtgt
     1741 tgacggcaat gcctgatgaa tcataacccc ggtattcgag gcgtttgaga ccgtcggtca
     1801 gaaaatcgac gacattgtga tgggcgcgga tggcgccgac gataccgcac ataactgttc
     1861 cttagtatcc ggttgaaaaa aaaacaggcg cggacggctc ccgtgccgca ccttccgctt
     1921 cggattataa accgcctccc gcgccggaaa acagcaaaat gccgtctgaa ggcttgggct
     1981 tgctcaaaaa agggagggat ttccccgcct gaccgggatg ggcgttcaga cggcattgcc
     2041 tgctgccggt tt
//
LOCUS       DAXIFS010000235         2046 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.235, whole genome shotgun sequence.
ACCESSION   DAXIFS010000235 DAXIFS010000000
VERSION     DAXIFS010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.235"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            185..2046
                     /gene="pilC"
                     /locus_tag="ACFOCA_001930"
                     /pseudo
     CDS             185..2046
                     /gene="pilC"
                     /locus_tag="ACFOCA_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261200.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
BASE COUNT          612 a          500 c          514 g          420 t
ORIGIN      
        1 agaccgttgg gcatctgcag cggtttgcta aaaaacgctt taccgtgatc agtgtgcaaa
       61 gttaaaatgg ggaagtaagc ttttcaatca gcaattcggc gggcgcggaa tcgggcggtt
      121 taccgaaccc cggcgttcgc ggcgcgccgc cccgtcccgt gaaggcaaac tcaaggaata
      181 aaagatgaat aaaacttgga aacggcaggt tttccgccat accgcgcttt ataccgccat
      241 attgatgttt tcccataccg gcgggggggg ggcaggcgca agcgcaaacg caaacgcata
      301 aatacgctat tgtaatgaac aatcaaaagc tgcctgaggt aaagtggggg aacgactata
      361 gctcattgac ggacaaaagc aatgaacgcg aagttaccca tacgagtaaa tttgttgtag
      421 caaaaaagca cattagtttc tcattcaata ataccgatga agttgttgct gaaaaaaaag
      481 atgctgtcgt tttcggcgcg gcgacttatc tgccgcccta cggcaaggtt tccggttttg
      541 ataccgctaa gctggccgag cgcaaaaatg cccttgatca gattggtacg acccaccctg
      601 ggttgatagg ctacaactac caagatgtca cttgcgccag cggaaactgt cctgaactta
      661 gctatagaac ccaatttacc ttcaataacg ggttgaaaag aaatggaaac ggcggcaggc
      721 tggatatata cgaagacaaa agccgcgaca gttcgcccat ttacaaattg aaggattatc
      781 cttggttggg cgtgtctttc aatttgggcg gcgagagctc cttcaaacca aagagacaag
      841 gttctttggt atcttctttt agcgaggatg tgacgcagca aaatggtaca caagaccaat
      901 acaaaagcaa aaacctcgtt tatacgacag acgattacaa tagtaagggt aataaaaacc
      961 atcaggacaa acaccacgcc gtcgcctttt atctgaacgc caagctgcat ttgctggata
     1021 aaaaacaaat caaaaatatc gcgcaaggcg taacagttga tttgggtacc ttgaaaacac
     1081 gcatcgagcc gacggacgcg tggaaaaaca ggcaggggag ctattttaat aatggtactt
     1141 ggacgtatga agagaaagga tcagtcagcg tcaaactcaa attgccggaa gtcaaagcag
     1201 gccgctgcat caccacaccg aaccccaatc ccaaatccaa agccccttcg ccggcactga
     1261 ccgcccccgc gctgtggttc ggagctgggc aagatggtaa ggcggagatg tattccgctt
     1321 cggtttccac ctaccccgac agttcgagca gccgcatcta ccttcaaaat ctgaaaagaa
     1381 aaaccgactc caacagaccc ggccgctatt ccctcgcaga cttgagtgcg tcggatattc
     1441 aaagtaaaga gccgactttc acaagtcggc aaacaatcat ccgcttggat ggtggcgtac
     1501 ggcatatcca actggataga aacaatgagg tcactagttt taatggcgac aacggaactt
     1561 tcggcattgt taatgaaggg agcgtcgttc ctgaaagcaa cgagtggaaa aaagtgctgc
     1621 tgccttggac ggttcggggt tttgctgatg acagtaaatt taaagcattc aacaaagaaa
     1681 aaaacaacga caacaagcca aaatacagcc aaagataccg catccgcgaa aacggcaaca
     1741 acggcaagcg cgatttgggc gacatcgtca acagccccat cgtggcggtc ggcgagtatt
     1801 tggctacttc cgccaacgac gggatggtgc atatcttcaa aaaaggcaac ggcggggacg
     1861 cgcgcgacta tagtctgaag ctcagctaca tcccgggcac gatgccgcgc aaggatattc
     1921 aaagtcaaga ctccaccctc gccaaagagc tgcgcgcctt tgccgaaaaa ggctatgtgg
     1981 gcgaccgcta cggcgtggac ggcggctttg tcttgcgcca agttaacaac ttaaatgggc
     2041 aagacc
//
LOCUS       DAXIFS010000236         2040 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.236, whole genome shotgun sequence.
ACCESSION   DAXIFS010000236 DAXIFS010000000
VERSION     DAXIFS010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.236"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1064
                     /gene="fic"
                     /locus_tag="ACFOCA_001931"
     CDS             <1..1064
                     /gene="fic"
                     /locus_tag="ACFOCA_001931"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6988582.1"
                     /translation="ESKTILKRCITARASLARLKQAAELIPNQAMLINTLPVMEARAS
                     SEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRTALFAGYESLTSRPLCTQTAIMV
                     CNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGEETIRGKLANWERFIHESGDLDP
                     LIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEKGLLDLPILYLSRYIIENRADYY
                     RLLLGVTERQDWESWIIYILDGVADTADWTVSKIDAIRRLFEQTRQHIRTHAQGIYTH
                     ELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKELSDIGVLQEIAIGRDKLFIHPRLM
                     ELLRGEGNSFTSFQSLVKA"
     gene            1094..1972
                     /locus_tag="ACFOCA_001932"
     CDS             1094..1972
                     /locus_tag="ACFOCA_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6988583.1"
                     /translation="MARRSKTFEEAAAEVEERFGHRGIKLVEFEGTAKPCVINCPKHG
                     NQTCSRYSNMFIGSSWGCPSCGNEQAAKAGIATLRKNHIALEMLKQAVTGMTKQERIT
                     TQAYNEMTKSVAGSNSIVLNDVQGDTTINNHHTHTHNHSDADGKALSMRLTSRPLLSD
                     RQAAAFARTGKLTGSFDLFASVVAPSQYTFAVAMPDTSMSPVIEKGDLLVVEPRMCPA
                     DEDIALIELSDKRLVVAHLVIDIAGRMLIYQTGRPSEAFDLPEGSTILGVVLEVKKRF
                     MSAAQARRRVDSDYHP"
     gene            1976..2040
                     /locus_tag="ACFOCA_001933"
                     /pseudo
     CDS             1976..2040
                     /locus_tag="ACFOCA_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311460.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT          557 a          536 c          525 g          422 t
ORIGIN      
        1 ttgaaagcaa aaccatcctg aaacgttgta taaccgcccg tgcatccctt gcccgtttaa
       61 agcaggcggc agaactgata ccgaatcaag ccatgctgat taacaccctt cctgttatgg
      121 aagcccgtgc aagttcggaa attgaaaaca tcgtaaccac aacggataag ctgtttcaat
      181 ccctgcaaat ggatacggaa cggcaagacc ctgccacgaa agaagccctg caataccgca
      241 ccgccctgtt tgcaggctat gaatcactga cgagccgccc tttatgcaca caaaccgcca
      301 tcatggtctg caacgccatc aagcacccct acgaaatggc catccgcaaa acaggcggca
      361 cagccctaaa aggaggcaac agcggaaatg ttgtctatac cccgcccgaa ggagaagaaa
      421 ccatacgcgg caagctggca aattgggagc ggtttattca cgaaagcggc gatttagacc
      481 cgcttatcat catggcggcg gcacattacc aatttgaagc catccatccg tttacggacg
      541 gcaacgggcg gacggggcgc atattgaaca gcctgctatt gattgaaaaa gggcttttgg
      601 atttgcctat tttgtatttg agccgctaca tcatcgaaaa cagggcggac tattaccgcc
      661 tgctgttagg cgtaaccgaa cggcaggatt gggaaagctg gataatctac atcttagacg
      721 gcgtagccga caccgccgat tggacggtat cgaaaataga tgcgatacgc cgcctgttcg
      781 agcagacacg gcaacacata cggacacacg cacaaggaat ctacacgcac gaactggtaa
      841 atcttctgtt tgagcagcca tatacacgca ttgccaacct agaagcggca gggatagcca
      901 aacggcagac ggcctctaag tacctgaaag agctttcaga cataggtgtg ctgcaagaaa
      961 tcgccattgg cagggacaaa ctattcattc atccgcgcct aatggaacta ttgcggggag
     1021 agggcaacag ctttacctca ttccaatccc tcgttaaagc atagccaaaa taatcaataa
     1081 tccggaggtc aatatggcaa gaaggtcaaa aacatttgaa gaagctgctg ctgaggttga
     1141 ggaacgtttc ggtcatcgtg gcattaagtt ggtcgagttt gagggtacag ccaagccgtg
     1201 tgtaatcaac tgccctaaac atggaaacca aacctgttcg aggtactcca atatgttcat
     1261 aggaagtagc tggggttgcc cctcttgtgg taatgagcaa gctgcaaaag ccggtatagc
     1321 gacccttagg aagaatcaca tagcgttaga aatgctgaaa caggctgtaa caggtatgac
     1381 caagcaagag cgcatcacga cgcaagccta caatgagatg accaaatccg tggcaggttc
     1441 aaacagcata gtccttaacg atgtccaagg cgatacgacc atcaacaacc atcatacgca
     1501 tacgcacaac cacagcgatg ccgatggcaa agcactgtcg atgaggctca catcccgtcc
     1561 tttgttgtca gaccgtcagg cggcggcttt cgcccgtaca ggcaaactca cgggcagttt
     1621 cgacctgttt gcttcggtgg tcgccccctc gcagtacacg tttgccgttg ccatgcccga
     1681 cacgtccatg tcgccggtta tcgaaaaggg agacttgctg gtggtcgagc cgcgtatgtg
     1741 ccctgcggac gaagacatcg cgctgattga actgtccgac aagcggctgg tcgtcgcgca
     1801 ccttgttatc gatattgcgg gcaggatgct gatttatcag acgggcaggc cgtctgaagc
     1861 ctttgacctg cccgaaggca gcacgatttt aggtgtggtg ctggaggtca aaaaacggtt
     1921 tatgtccgcc gcacaggcga gaaggcgtgt tgattcggat taccacccct gatgtgtgga
     1981 cggctggtac gatttccgct tccaaaacgt cgtgtacgcg cccgaccgca gcccggaaat
//
LOCUS       DAXIFS010000237         1986 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.237, whole genome shotgun sequence.
ACCESSION   DAXIFS010000237 DAXIFS010000000
VERSION     DAXIFS010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.237"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            163..540
                     /locus_tag="ACFOCA_001934"
     CDS             163..540
                     /locus_tag="ACFOCA_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6988584.1"
                     /translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNV
                     PRLEQLAQIFKIDMWDLLKSGGGGMVFQINEGDSGGDIALYASGDVSMKIEFLKMELK
                     HCKEMLEQKDKEIELLRKLTETV"
     gene            629..1198
                     /gene="rsmD"
                     /locus_tag="ACFOCA_001935"
     CDS             629..1198
                     /gene="rsmD"
                     /locus_tag="ACFOCA_001935"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HFC6988585.1"
                     /translation="MAAGKHTKHSNRVRIIGGQCRGRKLSFTSADGLRPTPDSVREKL
                     FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
                     QVQIVCSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRAFVYLEAGTL
                     PDIPDWLTEYREGKSGQSTFELRVFQVAE"
     gene            1321..1572
                     /locus_tag="ACFOCA_001936"
     CDS             1321..1572
                     /locus_tag="ACFOCA_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFC6988586.1"
                     /translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
                     YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
     gene            1669..1752
                     /locus_tag="ACFOCA_001937"
     tRNA            1669..1752
                     /locus_tag="ACFOCA_001937"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1703..1705,aa:Tyr,seq:gta)
     gene            1783..1856
                     /locus_tag="ACFOCA_001938"
     tRNA            1783..1856
                     /locus_tag="ACFOCA_001938"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1815..1817,aa:Gly,seq:tcc)
     gene            1866..1940
                     /locus_tag="ACFOCA_001939"
     tRNA            1866..1940
                     /locus_tag="ACFOCA_001939"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1898..1900,aa:Thr,seq:ggt)
BASE COUNT          577 a          425 c          496 g          488 t
ORIGIN      
        1 ataataaaaa aagaccacca agggtgaaga gataggaatt ccatgttttc cctttttttg
       61 taaaaaggaa aaaatcttat ctaatagtta attgcctaac cagccagaag aagtttaaaa
      121 tctatcccaa taattcaacc atctatacag aaagttcagc ttatggaaac ccacgaaaaa
      181 atccgcctga tgcgcgaatt gaataaatgg tcccaggagg atatggcgga aaagctggcg
      241 atgtcggcag gagggtatgc caaaatcgaa cggggcgaaa cgcagttgaa tgtcccgcgt
      301 ttggagcagt tggctcagat tttcaaaatc gatatgtggg acttgctcaa atcgggcggt
      361 ggtgggatgg tgtttcagat taatgaaggt gatagtggtg gcgatattgc gttgtatgcg
      421 tcgggtgatg tttcgatgaa aatagaattt ttaaaaatgg agttgaaaca ctgcaaagaa
      481 atgttggaac aaaaagacaa agaaatcgag ctgctccgca agctgaccga aaccgtttaa
      541 acagatatgc cgtctgaaaa aagttttcag acggcatatt ctttgacagg tcttgtataa
      601 taccgtttga acttacaggt ttttgattat ggcggcaggc aaacatacca aacacagcaa
      661 ccgggtacgc attatcggcg ggcaatgccg gggcaggaaa ttgagtttca catccgccga
      721 cggactgcgt ccgacacccg acagcgtgcg tgaaaagctg tttaactggc tgggacagga
      781 tttgacgggt aaaacggttt tggatctctt cggaggcagc ggcgcactcg gtatagaagc
      841 cgcttcgcgc aacgccaaac gcgtgctgat ttcggataac aaccgccaaa ccgtgcagac
      901 cttgcagaaa aacagtcgcg aactgggttt ggggcaggtg caaatcgtct gttcagacgg
      961 catcgcatat ttgaagaccg tatccgaaca gtttgatgtt gtctttctcg acccgccgtt
     1021 tgcatggcag gactggcaaa tcctgtttga tgccttgaag ccgtgcctga acccccgagc
     1081 attcgtctat ctcgaggcgg gtacgctgcc ggatattccc gattggctga cggaatatag
     1141 agaagggaaa tcggggcaga gtacattcga attaagggtt ttccaagtgg ctgaataata
     1201 tgcgctttga taatcatttc cgagttgtaa acattcgttt gcaaccgtcc ggttcaaaaa
     1261 aaccttgtgc tataatccgc gcccgcccgg ttttgataat ttagtggaaa aggaaaagaa
     1321 atgtcgcttt ttattaccga cgagtgcatc aactgcgacg tatgcgaacc cgaatgcccc
     1381 aatgatgcca tttcccaagg cgaggaaatt tacgaaatca accccaacct ctgcacgcag
     1441 tgcgtcggac actacgatga gccgcagtgc cagcaggttt gcccggtgga ctgcatcctg
     1501 attgacgaag aacatcccga aacccatgac gagttgatgg cgaaatacga aaagattatc
     1561 cagtttaaat aaattctttt taaaacatca aattatgtct gttttgaaat aaaatcaaaa
     1621 aaaaacttga cggaaaagca agccgctaat aaactaacgt tctcttttgg agggattccc
     1681 gagcggtcaa agggggcaga ctgtaaatct gttgcgaaag cttcgaaggt tcgaatcctt
     1741 ctccctccac caaaattctt acttggggca gtagcgagta atgcgggtgt agctcaatgg
     1801 tagagcagaa gccttccaag cttacggtga gggttcgatt cccttcaccc gctccaaaca
     1861 attaggccca tgtagctcag gggtagagca ctcccttggt aagggagagg tcggcagttc
     1921 aaatctgccc atgggcacca tctctcgatt attcatttct ttaaggctta gatatatagg
     1981 atattg
//
LOCUS       DAXIFS010000238         1907 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.238, whole genome shotgun sequence.
ACCESSION   DAXIFS010000238 DAXIFS010000000
VERSION     DAXIFS010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.238"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            18..212
                     /gene="thiS"
                     /locus_tag="ACFOCA_001940"
     CDS             18..212
                     /gene="thiS"
                     /locus_tag="ACFOCA_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFC6988587.1"
                     /translation="MNIILNGGPAELHGTSVADLIAQTAPQQPFAVAVNTVFIPKGAY
                     AETVLNENDKIDIVRPVVGG"
     gene            426..1214
                     /locus_tag="ACFOCA_001941"
     CDS             426..1214
                     /locus_tag="ACFOCA_001941"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFC6988588.1"
                     /translation="MLTLYGETFPSRLLLGTAAYPTPEILKQSIQTAQPAMITVSLRR
                     AGSGGEAHGQGFWSLLQETGVPVLPNTAGCQSVQEAVTTAQMAREVFETDWIKLELIG
                     DDDTLQPDVFQLVEAAEILIKDGFKVLPYCTEDLIACRRLLDAGCQALMPWAAPIGTG
                     LGAVHAYALNVLRERLPDTPLIIDAGLGLPSQAAQVMEWGFDGVLLNTAVSRSGDPVN
                     MARAFALAVESGRLAFEAGPVEARDKAQASTPTVGQPFWHSAEY"
BASE COUNT          474 a          558 c          472 g          403 t
ORIGIN      
        1 agaaacatcg agaaaccatg aacatcatct taaacggcgg acccgccgaa cttcacggca
       61 caagcgttgc cgacctcatc gcccaaaccg cgccgcaaca gccctttgcc gtggcggtca
      121 acaccgtttt catccccaaa ggcgcgtatg cggaaacggt tttgaacgaa aacgacaaaa
      181 tcgatatcgt ccgccccgtc gtcggcggct aggcggtttt gccttttcag acgacccctg
      241 tccccaaaac aacgttatgg tggattaact ttaaatcagg acaaggcgac gaagccgcag
      301 acagtacgga tagtacggaa ccgattcact tggtgcttca gcaccttaga gaatcgtttt
      361 ctttgagcta aggcgaggca acgccgtact ggtttttgtt aatccactat acaaaggaac
      421 ccattatgct caccctatac ggagaaactt tcccttcacg gctgctgctc ggcacggctg
      481 cctacccgac ccccgaaatc ctcaaacaat ccatccaaac cgcccagcct gcgatgatta
      541 ccgtctcgct gcgccgcgcg ggaagcggcg gcgaggcgca cggtcagggg ttttggtcgc
      601 tgcttcaaga aaccggcgtt cccgtcctgc cgaacacggc aggctgccaa agcgtgcagg
      661 aagcggtaac gacggcgcaa atggcgcgcg aagtgtttga aaccgattgg ataaaattgg
      721 aactcatcgg agatgacgac accttgcagc cggatgtgtt ccagcttgtc gaagcggcgg
      781 aaatcctgat taaagacggc ttcaaagtgc tgccttattg caccgaagac ctgattgcct
      841 gccgccgcct gctcgacgcg ggctgtcagg cgttgatgcc gtgggcggcc ccgatcggca
      901 cgggtttggg cgcggttcac gcctacgcgt tgaacgtcct gcgcgaacgc ctgcccgaca
      961 cgccgctgat tatcgacgcg ggcttgggtt tgccctcaca ggcggcacaa gtgatggaat
     1021 ggggctttga cggcgtgctt ttgaatactg ccgtttcccg cagcggcgat ccggtcaata
     1081 tggcacgcgc cttcgcactc gccgtcgaat ccggacggct ggcatttgaa gccggaccgg
     1141 tcgaagcacg cgacaaagcg caagccagca cgccgacagt cggacaaccg ttttggcatt
     1201 cggcggaata ttgaaaaagg cggcaaaaat gccgtctgaa cggttcagac ggcatcgcag
     1261 cccaaaacgg cggcggtctg aaacgggcaa accgccattc ccaagcatca cggctctgtc
     1321 ggaaaaaatg gaaaaaccgg ccggaaaacc ttgccgcccg tcccgatgcc gcaaccaacg
     1381 aaacactcgg cctccacggt gtgcaggctg ccgcgcaagc cctaaatacg gcaatagaag
     1441 aagcgttttg ttgttgtttg aatacactta aaaataccta aagccgtccg taagccttca
     1501 tccgcaacgg ttttaccgct tttgcatccc cgaatccacg ctcaaacacc cccgaatgac
     1561 aaccctgtcc gcgccaaatc ggacggatgt tcaaacacgg caggcttatt tccgtcaggc
     1621 acgaagccct cagctatgac tgccgacccc gatttgtccg acacaatgaa agtttgccga
     1681 cccgaatcac aaacatcggc ggacaggtta atttgtttat ttttcatcgt attacaaaaa
     1741 atccgcattt atttttaaat ttttattgat aattattatt attagcgtat aatcaaaacc
     1801 actcggaagt cgtccattcc gaaccattaa acactgtatt ccctcacaat tcactttcac
     1861 acttggagtc ggcatatacg agacatacat tcccttttta tatatca
//
LOCUS       DAXIFS010000239         1905 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.239, whole genome shotgun sequence.
ACCESSION   DAXIFS010000239 DAXIFS010000000
VERSION     DAXIFS010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.239"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            100..1905
                     /gene="pilC"
                     /locus_tag="ACFOCA_001942"
                     /pseudo
     CDS             100..1905
                     /gene="pilC"
                     /locus_tag="ACFOCA_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249187.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
BASE COUNT          547 a          507 c          465 g          386 t
ORIGIN      
        1 attcggaagg gcttgcaccc ctcccggaca aagcctgatc ctgccgcccc gaaggacgga
       61 tgcccgaagg gcggggggtt tgaccgaaaa ggaaatacga tgaataaaac tttaaaaagg
      121 cgggttttcc gccataccgc gctttatgcc gccatcttga tgttttccca taccgggggg
      181 gggcgcaggc ggaaacccat aactacgcta ttgtcatgaa cgaacaaaat cagctgaagg
      241 taaagcagaa ggattcatat tcaaccttaa gggaaaaaga cagggaacgc aaatttatct
      301 ataataaagg ctggcagggt ggaggctctg tcttgttcga caataccgat acccttgttt
      361 cccgacaaag cggtactgcc gtttttggca cagccaccta cctgccgccc tacggcaagg
      421 tttccggttt tgatgccaac gctctgaaag agcgcaacaa tgccgtcgat tggattcata
      481 ccacccgggc cgggctggca ggctacgcct acaccaacgt catatgcaga agccaccaat
      541 gcccccaact tgtctataaa acccgatttt ccttcgataa tcccgacttg gcaaaaagag
      601 gaggcgggct ggataggcac acagagccaa gccgcgacaa ttcgctcatt tacaaattga
      661 aggatcatcc atggttgggc gtatctttca atttgggcag cgagaatacc gtcaaaaata
      721 gccaatcatc cagcagattg atatcttctt ttagtgaaga caataataat caaaccatcg
      781 tctctacgac agaaaaccac cctatttccc ttggcgacgg gcagcgcgaa cataccgccg
      841 tggcctatta tctgaacgcc aaactgcacc tgctggataa aaaagggatt aaagatatca
      901 ccggcaaaac agtgcggttg ggtgtcttga agccgagcat cgatgtgaag acacaaagga
      961 cggggcttgg cggcttgcta ggttttcatg ctaagtggga cattaaagat accgggcaga
     1021 ttccggtcga gctcggcctg ccgcaaatca aagcaggccg ctgcatcaac aaaccgaacc
     1081 ccaatcccaa agcccaagcc ctttcgccgg cactgactgc ccccgcgctg tggttcggac
     1141 ctgtgcaaaa tggtaaggcg cagatgtatt ccgcttcggt ttctacctac cccgacagtt
     1201 cgagcagccg catcttcctt caaaatctga aaagaaaaaa cgaccccaac aaacccggcc
     1261 gctattccct cgcagacttg agtgcgtcgg atattcaaag taaagagccg actttcacaa
     1321 gtcggcaaac cgtcatccga ttggatggcg gcgtacagca gatcaaactg agtagaaaca
     1381 atgatgaggt cgtcaatttt aatgtaaaca acggcaacaa cactttcggc attgttaagg
     1441 acttgggcgt cgatcctgat gccagcgagt ggaaaaaagt gctgctgcct tggacggttc
     1501 gtgcttccaa tgatgacaat caatttaaaa caattaacca acaacttaac caacaaaaaa
     1561 tccaatacag ccaaagatac cgcatccgcg aaaacggcaa caatagcaag cgtgatttgg
     1621 gcgacatcgt caacagcccc atcgtggcgg tcggcgagta tttggctact tccgccaacg
     1681 acgggatggt gcatatcttc aaaaaaaacg gcggcagtga tgaacgcagc tacaatctga
     1741 agctcagcta catccccggc acgatgccgc gcaaggatat tgaaaacaaa gactccaccc
     1801 tcgccaaaga gctgcgcacc tttgccgaaa aaggctatgt gggcgaccgc tacggcgtgg
     1861 acggcggctt tgtcttgcgc caagtcgaac tgagcgggca aaaac
//
LOCUS       DAXIFS010000240         1897 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.240, whole genome shotgun sequence.
ACCESSION   DAXIFS010000240 DAXIFS010000000
VERSION     DAXIFS010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.240"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>1897
                     /gene="frpC"
                     /locus_tag="ACFOCA_001943"
     CDS             <1..>1897
                     /gene="frpC"
                     /locus_tag="ACFOCA_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron-regulated protein FrpC"
                     /protein_id="HFC6988589.1"
                     /translation="GNEAFKNEINSLVHDMKAAGKEFGDDLNTQWNNLTQAAEIIYND
                     IVDNTSQGIEKGVKAIKELSEKMKNAASDLADGSAEKAKQVVEDLAQAAKEAYENAKS
                     TAEKAAQAAREFFKGLPSFKDLAEKFRDLFPNPEGWIDDGHQCFAPWVKETKKRNGKY
                     HVYDPLALDLDGDGIETVATKGFSGSLFDHNRDGIRTATGWVSADDGLLVRDLNGNGI
                     IDNGAELFGDNTKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDG
                     ISQANELRTLEELGIQSLDLAYKDVNKNLGNGNTLAQQGSYTKTNGTTAKMGDLLLAA
                     DNLHSRFKDKVELTAEQAKAANLAGIGRLRDLREAAALSGDLANMLKAYSAAETKEAQ
                     LALLDNLIHKWAETDSNWGKKSPMRLSTDWTQTANEGIALTPSQVAQLKKNALVSLSD
                     KAKAAIDAARDRIAVLDAYTGQDSNTLYYMSEEDALNIVKVTNDTYDHLAKNIYQNLL
                     FQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQKAFVDLAEMLAYGELRS
                     WYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLAKTSGTQADDILQNVGFGHNKN
                     VSLYGNDG"
BASE COUNT          595 a          420 c          435 g          447 t
ORIGIN      
        1 aaggaaatga agcttttaaa aatgaaatca atagcttggt tcatgatatg aaagctgctg
       61 gcaaggaatt tggagatgac ttaaatacac agtggaataa tctcactcag gctgccgaaa
      121 taatctataa tgacatagta gacaatacta gtcaaggaat agaaaaaggt gtcaaagcca
      181 ttaaagaatt gtctgaaaaa atgaaaaatg ctgcttccga tttggctgac ggttcagcag
      241 agaaagctaa acaagtagtg gaagatttgg ctcaagccgc caaagaagca tacgaaaatg
      301 ccaaatccac agccgagaag gctgctcaag cagctcgaga attttttaag ggcttgccca
      361 gttttaaaga tctggccgaa aaatttagag atctgttccc aaatccggaa ggctggatcg
      421 atgatggtca ccaatgtttc gctccttggg ttaaagaaac taaaaaacgc aatggcaaat
      481 atcatgtcta cgaccccctt gccctagatt tggacggcga cggcatagaa accgttgcca
      541 ccaaaggctt ttcaggcagc ctatttgacc acaaccgcga tggcatccgc accgccaccg
      601 gttgggtttc tgccgatgac ggtctgcttg tgcgcgattt gaacggcaac ggcatcatcg
      661 acaacggtgc ggaactcttc ggcgacaaca ccaaactggc agacggctct tttgccaaac
      721 acggctacgc ggctttggcc gaattggatt caaacggcga caacatcatc aacgcggcag
      781 acgccgcatt ccaaaccctg cgtgtatggc aggatctcaa ccaggacggc atttcccaag
      841 ctaatgaatt gcgtaccctt gaagaattgg gtattcaatc tttggatctc gcctataaag
      901 atgtaaataa aaatctcggt aacggtaaca ctttggctca gcaaggtagc tataccaaaa
      961 caaacggtac aaccgcaaaa atgggggatt tacttttagc agccgacaac ctgcacagcc
     1021 gttttaaaga taaagtggaa ctcactgccg aacaggcaaa agccgccaat cttgcgggca
     1081 ttggtcgtct gcgcgatttg cgcgaagctg ccgcattgtc cggcgatttg gccaatatgc
     1141 tgaaagctta ttctgccgcc gaaactaaag aagcacagtt ggcattgtta gataatttga
     1201 ttcacaaatg ggcggaaacc gattcgaact ggggcaaaaa atcgccaatg cgactttcaa
     1261 ccgattggac gcaaacggct aatgaaggta ttgcactgac accatcccaa gtagcacaac
     1321 taaaaaagaa cgctttagtt tccctttctg ataaagctaa agcagctatt gacgccgccc
     1381 gcgaccgcat tgccgtgctt gatgcctaca cggggcagga ttccaacaca ctctattaca
     1441 tgagcgagga agatgcgctt aatatcgtca aagtaaccaa cgatacatac gaccatctcg
     1501 ccaaaaacat ctaccaaaac ctgttgttcc aaacccgttt gcagccatat ttgaatcaaa
     1561 tcagtttcaa aatggaaaat gatacgttca ctttggattt tagtggtctt gttcaagcat
     1621 ttaaccatgt caaagaaact aatccgcaaa aagcttttgt ggatttggcc gagatgcttg
     1681 catatggcga acttcgttct tggtatgaag gccgaagact aatggccgat tatgtggagg
     1741 aggcaaaaaa agcaggtaaa tttgaagatt accagaaagt gttgggtcag gagaccgttg
     1801 cattattagc taaaacatcg ggtacgcaag cagatgatat cctgcaaaat gtaggctttg
     1861 gtcataataa aaatgtttct ttatatggta atgacgg
//
LOCUS       DAXIFS010000241         1880 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.241, whole genome shotgun sequence.
ACCESSION   DAXIFS010000241 DAXIFS010000000
VERSION     DAXIFS010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.241"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1014
                     /gene="mafA"
                     /locus_tag="ACFOCA_001944"
     CDS             52..1014
                     /gene="mafA"
                     /locus_tag="ACFOCA_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6988590.1"
                     /translation="MQARLLIPILFSVFILSACGTLTGIPSHGGGKRFAVEQELVAAS
                     ARAAVKDMDLQALHGRKVALYIATMGDQGSGSLTGGRYSIDALIRGEYINSPAVRTDY
                     TYPRYETTAETTSGGLTGLTTSLSTLNAPALSRTQSDGSGSKSSLGLNIGGMGDYRNE
                     TLTTNPRDTAFLSHLVQTVFFLRGIDVVSPANADTDVFINIDVFGTIRNRTEMHLYNA
                     ETLKAQTKLEYFAVDRTNKKLLIKPKTNAFEAAYKENYALWMGPYKVSKGIKPTEGLM
                     VDFSDIRPYGNHTGNSAPSVEADNSHEGYGYSDEVVRQHRQGQP"
     gene            1054..>1880
                     /gene="mafB"
                     /locus_tag="ACFOCA_001945"
     CDS             1054..>1880
                     /gene="mafB"
                     /locus_tag="ACFOCA_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6988591.1"
                     /translation="MNLPIQKFMMLFAAAISLLQIPISHANGLDARLRDDMQAKHYEP
                     GGKYHLFGNARGSVKKRVYAVQTFDATAVSPVLPITHERTGFEGVIGYETHFSGHGHE
                     VHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARD
                     IYSYHIKGTSTKTKINTVPQAPFSDRWLKENAGAASGFLSRADEAGKLIWENDPNQNW
                     WGNRMDDVRGIIQGAANPFLTGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNL"
BASE COUNT          553 a          434 c          435 g          458 t
ORIGIN      
        1 actatattta caattttgat acaatttgtt tttcatcaaa ggagaaaatc tatgcaagca
       61 cggctgctga tacctattct tttttcagtt tttattttat ccgcctgcgg gacactgaca
      121 ggtattccat cgcatggcgg aggtaaacgc tttgcggtcg aacaagaact tgtggccgct
      181 tctgccagag ctgccgttaa agacatggat ttacaggcat tacacggacg aaaagttgca
      241 ttgtacattg caactatggg cgaccaaggt tcaggcagtt tgacaggggg tcgctactcc
      301 attgatgcac tgattcgtgg cgaatacata aacagccctg ccgtccgtac cgattacacc
      361 tatccacgtt acgaaaccac cgctgaaaca acatcaggcg gtttgacagg tttaaccact
      421 tctttatcta cacttaatgc ccctgcactc tctcgcaccc aatcagacgg tagcggaagt
      481 aaaagcagtc tgggcttaaa tattggcggg atgggggatt atcgaaatga aaccttgacg
      541 actaacccgc gcgacactgc ctttctttcc cacttggtac agaccgtatt tttcctgcgc
      601 ggcatagacg ttgtttctcc tgccaatgcc gatacagatg tgtttattaa catcgacgta
      661 ttcggaacga tacgcaacag aaccgaaatg cacctataca atgccgaaac actgaaagcc
      721 caaacaaaac tggaatattt cgcagtagac agaaccaata aaaaattgct catcaaaccc
      781 aaaaccaatg cgtttgaagc tgcctataaa gaaaattacg cattgtggat ggggccgtat
      841 aaagtaagca aaggaattaa accgacggaa ggattaatgg tcgatttctc cgatatccga
      901 ccatacggca atcatacggg taactctgcc ccatccgtag aggctgataa cagtcatgag
      961 gggtatggat acagcgatga agtagtgcga caacatagac aaggacaacc ttgattcaca
     1021 ctaccataac cgcttgctac caaggaaaac aaaatgaatt tgcctattca aaaattcatg
     1081 atgctgtttg cagcagcaat atcgttgctg caaatcccca ttagtcatgc gaacggtttg
     1141 gatgcccgtt tgcgcgatga tatgcaggca aaacactacg aaccgggtgg taaataccat
     1201 ctgtttggta atgctcgcgg cagtgttaaa aagcgggttt acgccgtcca gacatttgat
     1261 gcaactgcgg tcagtcctgt actgcctatt acacacgaac ggacagggtt tgaaggtgtt
     1321 atcggttatg aaacccattt ttcagggcac ggacatgaag tacacagtcc gttcgatcat
     1381 catgattcaa aaagcacttc tgatttcagc ggcggtgtag acggcggttt tactgtttac
     1441 caacttcatc gaacagggtc ggaaattcat ccggaggatg gatatgacgg accgcaaggc
     1501 agcgattatc cgccccccgg aggagcaagg gatatataca gttaccatat caaaggaact
     1561 tcaacaaaaa caaagataaa cactgttccg caagccccgt tttcagaccg ctggctaaaa
     1621 gaaaatgccg gtgccgcttc cggttttctc agccgtgcgg atgaagcagg aaaactgata
     1681 tgggaaaacg accccaatca aaattggtgg ggtaaccgta tggatgatgt tcgcggcatc
     1741 atccaaggtg cagccaatcc ttttctaacg ggttttcagg gattgggagt tggggcaatt
     1801 acagacagtg cggtaaaccc ggtaacctat gcggcagcac ggaaaacttt acagggtatt
     1861 cacaatttag gaaatttaag
//
LOCUS       DAXIFS010000242         1865 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.242, whole genome shotgun sequence.
ACCESSION   DAXIFS010000242 DAXIFS010000000
VERSION     DAXIFS010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.242"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            75..275
                     /locus_tag="ACFOCA_001946"
     CDS             75..275
                     /locus_tag="ACFOCA_001946"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988592.1"
                     /translation="MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYA
                     DIVASRLNISKETCTVIYLGIN"
     gene            310..1752
                     /gene="aldA"
                     /locus_tag="ACFOCA_001947"
     CDS             310..1752
                     /gene="aldA"
                     /locus_tag="ACFOCA_001947"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HFC6988593.1"
                     /translation="MKQLAMYINGRFENDFNGEWRDVLNPSTEETIAREPKGGKADVD
                     RAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERSDELTDTIVAEGGKTKDLARVEV
                     MFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVVAGILPWNFPFFLIARKM
                     GPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQ
                     VDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVG
                     NTGQICNCAERVYVHSSLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVK
                     AVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSA
                     FDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAG
                     WKKSGIGGADGKHGLEEYLQTQVVYLETDI"
BASE COUNT          476 a          509 c          489 g          391 t
ORIGIN      
        1 tgtttggtta cattaacggt tgatagaata agtgtttcat ttattagaga aattcaggca
       61 gcctgaaacc tgttgtggat accgttggca gtttagcgat tggttatgcc acaggcggca
      121 atgctggggc ttttactggt gcgaatgcag attggaataa tcggcagttg cattcgagtg
      181 aatataaatt agcagaacaa tatgcagaca tagtagcttc tcgtctaaac atttcaaaag
      241 aaacttgtac ggtaatttat ttgggaataa actaaaacta catctgacta caaaactgga
      301 gaacccgaaa tgaaacaatt ggccatgtac atcaacggac gctttgaaaa cgatttcaac
      361 ggcgaatggc gcgacgtatt gaacccatcc accgaagaaa ccatcgcccg cgaacccaaa
      421 ggcggcaagg cggacgttga ccgcgccgtc gcggcggcgc gtgcggcgca accggcttgg
      481 gagcgtctgc ctgcggtcga acgcggcgcg tatttgcgca aaatcgccca aggcatacgc
      541 gaacgctccg acgagctgac cgacaccatc gttgccgaag gcggcaaaac caaagacttg
      601 gcgcgcgtgg aagtcatgtt cactgccgat tatctcgatt accaagccga atgggcgcgc
      661 cgttacgaag gcgaaatcat ccaaagcgac cgcccgcgcg aaaacatttt attgttcaaa
      721 cgtccgctgg gcgtcgtggc aggcattttg ccgtggaact tccccttctt cctgattgcc
      781 cgcaaaatgg gcccggcttt ggtaacgggc aataccatcg tcgtcaaacc cagcagcgta
      841 accccgatca actgccacat cttcgccgaa atcgtcgatg cggtcggact gcccgcaggc
      901 gtgttcaacg tagtgaacgg ccctggtgcg gaaatcggca atgccttgtc cgcccatccg
      961 caagtcgata tggtcagcct gaccggctcc gtcgaagcag gccgccaagt gatggaagcc
     1021 gcctccgcca acatcaccaa agtttcgttg gaactcggcg gcaaagcccc cgccatcgtt
     1081 ttgaaagacg cggatttgga tttggcggtg aaatccatct tggcttcgcg cgtcggcaac
     1141 accggtcaaa tctgcaactg cgccgagcgc gtctatgtcc acagcagcct gaaagacgcg
     1201 ttcattgaaa aaatgaccgc cgccatgaaa ggcgtgcgct acggcaaccc tgccgaagcc
     1261 gaagcaggcg cgctggaaat gggtccgctg attgaagagc gcgccgtcaa agccgttgcc
     1321 gaaaaagtgg aacgggcagt caaacaaggt gcgaaactgg tctgcggcgg caaacgcgcc
     1381 gaagggcgcg gctatttctt cgagccgacc ctgctgaccg acaccgacaa cagtatggac
     1441 attatgaaag aagaaacctt cggccccgtg ctgcccgttt ccgctttcga cacgctcgac
     1501 caagtcatcg cactggctaa cgattgcgag tttggtctga ccagttctgt ttatacgact
     1561 aatttaaacg aagccttcta cgttacccgc cgcctgcaat tcggcgaaac ctacatcaac
     1621 cgcgaaaact tcgaagccat gcagggtttc cacgcgggct ggaaaaaatc cggcatcggc
     1681 ggcgcggacg gcaaacacgg tttggaagaa tatctgcaaa cccaagtcgt ttatctggaa
     1741 accgacattt aatgccgctt taaaaccccg atagaaaatg ccgtctgaac ccgttttcag
     1801 gttcagacgg catttttaca gtttcaccgg caatcagtca tgaccgacat cgatgttttt
     1861 gtctt
//
LOCUS       DAXIFS010000243         1861 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.243, whole genome shotgun sequence.
ACCESSION   DAXIFS010000243 DAXIFS010000000
VERSION     DAXIFS010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.243"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            250..321
                     /locus_tag="ACFOCA_001948"
                     /pseudo
     CDS             250..321
                     /locus_tag="ACFOCA_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696591.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family metal-binding protein"
     gene            425..808
                     /locus_tag="ACFOCA_001949"
     CDS             425..808
                     /locus_tag="ACFOCA_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HFC6988594.1"
                     /translation="MYCLRLRRLVLIFVNPLYIIATTVPAQQAFLDAAELMQWSIETE
                     GLGLNVISHKILGKDHAQVEFEAYFQDGQHRSAHHELSGFVNIGGQWYFIDPTVPHPA
                     MKQPCICGSGKKFKACCGKYLQPVA"
     gene            811..1032
                     /locus_tag="ACFOCA_001950"
     CDS             811..1032
                     /locus_tag="ACFOCA_001950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988595.1"
                     /translation="MPSERSDGIFNAQKKPFIPRVSMNGQYIAGKRLTCCTAEKGETT
                     VLTSKSIVPLLMLKNINFENILTNISGTY"
     gene            complement(1026..1820)
                     /locus_tag="ACFOCA_001951"
     CDS             complement(1026..1820)
                     /locus_tag="ACFOCA_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6988596.1"
                     /translation="MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQT
                     AFAAALPLLIDCPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAV
                     SVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIK
                     YLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIF
                     EEAGGRLTTLEGDEFWSGQHVFKRSVIAALEPNLFERWVRWIRENQ"
BASE COUNT          484 a          527 c          428 g          422 t
ORIGIN      
        1 gcaaagccat ctgaaggcga tgtgtttgaa cctgttgaaa gccgccaaca ggctaagtgc
       61 gcctgttgcc gcctaaaagg cagcacggat gcctgattat cgggtatccg gggaggatta
      121 agggggtatt ggggtaaaat taggaggtat ttggggcgga aatagctgaa aacctgtgtt
      181 tgggtttcgg ctgtcgggaa ggaaaggaat tttgcaaagg tctcgggcta tgccggctgc
      241 tgccgcccat tgcaccttcg ccgaatcctg ccgcccaccg ccgaagccct catgcgttcg
      301 cggtacagcg cgtatgtgct actatagtgg attaacaaaa accagtacag cgttgcctcg
      361 ccttagctca aagagaacga ttctctaagg tgctgaagca ccgagtgaat cggttccgta
      421 ctatttgtac tgtcttcggc ttcgtcgcct tgtcctgatt tttgttaatc cactatacat
      481 catcgctact accgttccgg cgcaacaggc attcctcgat gccgccgaac tgatgcaatg
      541 gagtatagaa accgaagggc tgggcttgaa cgtcatctcg cacaagatac tcggcaaaga
      601 ccacgcccaa gtcgaatttg aagcctactt ccaagacgga caacaccgat ccgcacatca
      661 cgaactgtcc ggcttcgtca acatcggcgg acaatggtat ttcatcgatc cgactgttcc
      721 gcatcctgcg atgaaacaac cctgcatttg cggatcgggc aaaaaattca aagcctgctg
      781 cggcaaatat ctgcaacctg tcgcataaaa atgccgtctg aacgttcaga cggcattttc
      841 aacgcgcaaa aaaaaccatt cataccaagg gtaagtatga atggtcaata cattgcggga
      901 aaacgtctta cttgctgcac tgccgaaaag ggagaaacga cagtgttaac cagcaaaagc
      961 attgtacctt tattaatgtt aaaaaacatt aattttgaaa atatattaac gaatatatct
     1021 ggaacctact gattttccct tatccacctg acccagcgtt caaacaaatt aggttcgagt
     1081 gcagcaataa ccgaacgttt gaacacatgc tgtccgctcc agaattcatc gccttccaat
     1141 gtcgtcagcc tgccgcccgc ctcctcgaaa atcaacgcac ccgcagcata atcccacagc
     1201 ttctgcccgc cgtgaacata aacatcataa cgcccgcaag ccagataaca ccagtccagc
     1261 gtgctgctgc ccatactccg tatcgttcca aaaggcgcga gcgtactcat gcggctggaa
     1321 agtttgcccg aacgcagata tttgatttcc acgcccgcaa tcgcctcatt gagtttttta
     1381 tccacgagac gcaaaggcag gcgcgtcccg tttaaaaacg ccccctgccc ccgttcggca
     1441 taaaaacatt cgccgctgac cggattgtag attacgccca actcggcacg cccgttgcgg
     1501 acaaacgcca ccgacaccgc aaaatgcggc agcccgttga caaaattatt tgtcccgtct
     1561 atcggatcga caatccacag ccccttttcc cccgaatatt gttcccacaa agccgactgt
     1621 tcctgccgcg acatttcctc gcccaacatc gggcaatcga tcagaagcgg caacgcggcg
     1681 gcaaaagccg tctgcgcggc aatgtccgcc tcgctcaaca tcgaaccgtc ttccttgcgg
     1741 tgggatggcg tattcaaaaa acgcggcata atttcggttt gcgcgatatg gcgcacgact
     1801 ttctgcaaac ggtgtaacac ttcctactgt cctcatattt tgaacttgcg gcgcgcgaac
     1861 g
//
LOCUS       DAXIFS010000244         1838 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.244, whole genome shotgun sequence.
ACCESSION   DAXIFS010000244 DAXIFS010000000
VERSION     DAXIFS010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.244"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            56..1225
                     /gene="metZ"
                     /locus_tag="ACFOCA_001952"
     CDS             56..1225
                     /gene="metZ"
                     /locus_tag="ACFOCA_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HFC6988597.1"
                     /translation="MSKKLHPQTLAIRGGKEQTEYREHNQALFLTSSFMWDNAQHAAD
                     LFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDH
                     VVSSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLG
                     EVANLEALAELAHGIGAILVVDNSLLSPIGSQPLKHGADISVSSATKAIDGHGRVMGG
                     VLAGSEELMAQAAVYCNSCGLAMSPFNAWQLLSGVETLSLRMEKQFDNALKIAQWLQA
                     QPQVQAVYYTGLPDHPQAALIRKQQNGGGIVIGFEVADQAAAWKVVDGVELFSRTANL
                     GDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR"
     gene            1311..1517
                     /locus_tag="ACFOCA_001953"
     CDS             1311..1517
                     /locus_tag="ACFOCA_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HFC6988598.1"
                     /translation="MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILF
                     LVLGLGVFGFVFKELLIKFLVLPK"
BASE COUNT          442 a          490 c          475 g          431 t
ORIGIN      
        1 attaaacaac gggcgcacgc tccgttgccg aacggataaa accgaggaat taccgatgag
       61 caaaaaactc catccgcaaa cgctcgccat acgcggcggc aaagaacaaa ccgaataccg
      121 cgaacacaat caggccttgt tcctgaccag cagcttcatg tgggacaacg cccaacacgc
      181 cgccgatttg ttttcaaaaa aaatcaaagg cttcacttat acccgtaccg ccaacccgac
      241 cacagccgcc tttgaaaaac gcatcgccgc tttggaaggt gcggaacgcg cggttgccac
      301 ttcgaccggc atgtccgcga ttcaggcggc gtttttcacc tttttgcagg cgggcgacca
      361 tgtggtttcc agccgcagcc tgttcggcac gaccgtcggc tttatcaata acatcgttac
      421 caaattcggc atcgaagtga gccacgtgtc gccgactgat ataaacgaat ggaaagccgc
      481 cgtcaaagcc aataccaaac tgctgttttt ggaaacgccg tccaacccct tgggcgaagt
      541 ggccaacttg gaggcattgg cggaattggc gcacggcatc ggcgcgattt tggtggtgga
      601 caacagcctg ctgtcgccca tcggctctca gcctttgaag cacggcgcag atatttccgt
      661 ttcttccgca accaaagcca tagacggaca cggacgcgtg atgggcggcg tgttggcggg
      721 ttcggaagaa ctgatggcgc aggccgccgt ttactgcaac tcttgcgggc tggcgatgtc
      781 gccgtttaac gcgtggcagt tgttgagcgg cgtggaaacc ctgtcgctgc gtatggaaaa
      841 acagttcgac aacgccctga aaatcgcaca atggctgcaa gcgcagccgc aggttcaagc
      901 cgtgtactac accggattgc ccgaccatcc gcaggcggcg cttatccgca aacagcaaaa
      961 cggcggcggc atcgtcatcg gctttgaagt cgccgaccaa gcagccgcgt ggaaagtcgt
     1021 ggacggcgtg gaactctttt cccgtaccgc caacctcggc gacgtgcgct cgaccatcac
     1081 ccatccgtgg acaaccacgc acggcaggat gcagcccgaa gaaaaactcg ccgccaacat
     1141 ccgccccgga ttggtgcgcc tgtcggtcgg tttggaatat gttggcgatt tgattgacga
     1201 tttgaaacag gcactcgcac gctgattgcg tgtttcagac ggcattggac agcagatgcc
     1261 gtctgaaacc cttatcgcgt atggcataca catcaacaat aggaaaaaat atggatgaag
     1321 cggtttttgc cgattgggcg ttgaaaatct gcctgaccgg tttgattatt tttttgggtt
     1381 ttatcgtttg gaatttgggc aaggagtcca aagcgggcaa attcggcatc gccattttgt
     1441 ttttggtttt gggcttgggc gtgttcggtt ttgtatttaa agaactgcta atcaagtttt
     1501 tggtattgcc caaataggct gccgcctgtc aaaatgctgt ctgaaatcat aaaaagtaat
     1561 ctgcacccta aaagtttgat ttaaccgcca actgattaag gtgcggattt ttatgacaaa
     1621 ataaaaatca tctttccgca gtcattccca cggacgcgaa agtctgtctt tttgaatccc
     1681 ggataatttt acatcgtcat tcccgcgcag gcgggaatct agtctgttcg gtttcggtca
     1741 tttacgataa attcctattg cttttcattt cctgattccc acttccgtgg gaatgacggc
     1801 ggagcggata aattctcgca atctaaaacc tcgtcagc
//
LOCUS       DAXIFS010000245         1836 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.245, whole genome shotgun sequence.
ACCESSION   DAXIFS010000245 DAXIFS010000000
VERSION     DAXIFS010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.245"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1560
                     /gene="nadB"
                     /locus_tag="ACFOCA_001954"
     CDS             52..1560
                     /gene="nadB"
                     /locus_tag="ACFOCA_001954"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HFC6988599.1"
                     /translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASHH
                     AQGGIAAAWSREDDIEKHVADTLEAGAGLCNEAAVRTILSQGKPAIEWLLAQGVAFDR
                     NYDGLHLTREGGHTCRRIAHVADYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTES
                     GAACGLTVLDCRTQETHRIRARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCA
                     VENLEFIQFHPTGLARPSENGRTFLISEAVRGEGGILTNQAGERFMPHYDRRAELAPR
                     DIVARAIAAETAKQTQDFVSLDISHQPAAFVRQHFPSIHRHCLSQCGLDITRQAIPVR
                     PVQHYTCGGIQTDPSGRTSLPQLYALGETACTGLHGANRLASNSLLECVVTARLAAQT
                     IADGQAFQTVPSKRSSENTSAEADIFSDGIQNTFSRPALQAFNQRHLGILRNDTGLRR
                     AIAQLRLWKQNQTEPHTVSEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
BASE COUNT          440 a          613 c          458 g          325 t
ORIGIN      
        1 aatttaatcc actataccgt ttcagacgac ctctcaaaca aggacaacac catgcaaacc
       61 gattgcgacg tattgattgc cggaaacggg ctggcggcac tgacgctcgc cctgtcgctg
      121 cctgaatcgt tccgcatcgt cattttgtgc aaaaaccggc tggacgacac cgccagccat
      181 catgcgcaag gcgggattgc ggcggcgtgg tcgagagagg acgacatcga aaaacacgtt
      241 gccgatactt tggaagcggg cgcaggtttg tgcaacgaag ccgccgtccg caccatcctg
      301 tcgcagggca aaccggcaat cgaatggctg ctggcgcagg gcgtggcgtt cgaccgaaat
      361 tatgacggtc tgcacctgac acgcgaaggc gggcacacct gccgccgaat cgcccacgtc
      421 gccgactaca cgggcgaagc cgtcatgcag agcctgattg cccaaatacg ccgccgcccg
      481 aacatccgcg tttgcgagcg gcagatggcg ttggacattc aaaccgaatc aggcgcggcg
      541 tgcggactga ccgtcctcga ctgccgaacg caagaaaccc accgcatccg cgcccgccat
      601 accgtactcg caggcggcgg cttggggcag atttacgccg ccaccaccac gccgcccgaa
      661 tgcacgggcg acgccatcgc tatggcgata cgcgcaggct gcgcagtcga aaacctcgaa
      721 tttatccaat tccaccctac aggcttggca aggccgtctg aaaacggccg caccttcctg
      781 atttccgaag ccgtgcgcgg cgaaggcggc atcctgacca accaagcggg cgaacggttt
      841 atgccgcatt acgaccgccg cgccgaactc gcaccgcgcg acatcgttgc ccgcgccatt
      901 gccgccgaaa ccgccaaaca aacgcaagac ttcgtctcgc tcgacatcag ccatcaaccc
      961 gcagcgttcg tccgccagca ttttccgtcc atccatcgac actgtttatc ccaatgcggc
     1021 ttggacatca cgcgccaagc catccccgtc cgccccgtgc aacactacac ctgcggcggc
     1081 atccaaaccg accccagcgg cagaacttcc ctgccgcagc tctacgcctt aggcgaaacc
     1141 gcctgcacag ggttgcacgg agccaaccgc ctcgccagca actccctact cgaatgcgtc
     1201 gttaccgcca ggcttgccgc ccaaaccatc gcggatggac aagcgttcca aaccgtaccg
     1261 tccaaaaggt cgtctgaaaa cacctccgcc gaagcagaca tcttttcaga cggcatccaa
     1321 aacacattca gccgccccgc cctgcaagcg ttcaaccaac gccatctcgg catcctccgc
     1381 aacgataccg gcctgcgccg cgccatcgcc caactgcggc tttggaagca aaaccaaacc
     1441 gaaccgcaca ccgtgtccga atacgaaaac cgcaacctgc tcgaatgcag cctcgccgtc
     1501 gcccaagccg catacaggcg gagacagaac atcggcgcgc attttaatag tgattgttaa
     1561 ggttggctgg ttagaaaaaa tcgttcaaat gaattttaat agcatggtta agagattggc
     1621 attcagtttt tagggttgcg taagttgggt tatcaatctg ttctaaaagc agaaaggccg
     1681 agacctttgc aaaattcccc aaaatcccct aaattcccac caagccattt aggggatttt
     1741 ccatgagcac cttcttccgg caaaccgcac aagccatgat tgccaaacac atcgaccgct
     1801 tcccgctatt gaagttggac caggtgattg attggc
//
LOCUS       DAXIFS010000246         1814 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.246, whole genome shotgun sequence.
ACCESSION   DAXIFS010000246 DAXIFS010000000
VERSION     DAXIFS010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.246"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(127..1437)
                     /locus_tag="ACFOCA_001955"
     CDS             complement(127..1437)
                     /locus_tag="ACFOCA_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HFC6988600.1"
                     /translation="MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEG
                     GKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQG
                     RATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
                     PLSSDGLKKLVAKVLALPEYRDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTR
                     RLKNLTAEFLADSLGAQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGG
                     TDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEGELALAQAVLYLAAA
                     AKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYAA
                     GESYMPDGLDEPDFYQPVPRGLEIKIGEKLEWLKSLDEEALKAK"
BASE COUNT          415 a          487 c          486 g          426 t
ORIGIN      
        1 ttaatccact ataccacgtt gtctttattg gctttatcaa taaacaggat aagacctgaa
       61 aaaaagccga tacgcctttt tggtgtaccg gctttgccat accgttctgc ttcagacggc
      121 attgcttcat tttgccttta atgcctcttc atccagcgat ttcaaccatt ccagcttttc
      181 gccgattttg atttccaacc cgcgcgggac gggttggtag aagtccggtt cgtccaagcc
      241 gtcgggcata tagctttcgc cggcggcgta ggcgttcggt tcgtcgtggg cgtagcggta
      301 ttcgcgtccg tagcccaatt ccttcatcag cttggtcggg gcgttgcgca ggtggacggg
      361 cacttcgtcg ctagcgtttt ctttgacgaa gtggcgcatt tggttgtatg ccttgtagcc
      421 cgcgttggat ttcgcggcgg cggcaagata caataccgct tgcgccaaag ccagttcgcc
      481 ttcgggcgag cctaagcgtt cgaaggtggc ggcggcatcg ttggcgattt ggaaggcgcg
      541 cgggtcggca agcccgatgt cttcccaagc gatacgcacg atgcggcggg cgaggtagcg
      601 cgggtcggtg ccgccgtcga gcatacggca gaaccaatac agcgcggcgt tcggatgcga
      661 accgcgcacg gatttgtgca gggcggagat ttggttgtag aaactctcgc cgcctttgtc
      721 gaaacggcgg atttgcgccc cgagactgtc ggcgagaaat tcggcggtta agtttttcag
      781 acgacgtgta tcggcggcgc gtaaaagttg ttccaacaaa ttcaacaatc tgcgcgcatc
      841 accgtcggcg gtattgacga acagctcctg cgcgtcggct tcaatcgtga aatcccggta
      901 ttcgggcaaa gccaaaactt tggcaaccag ctttttgagg ccgtctgaag acaagggctg
      961 caaaacatac acctgcgcgc ggctcaacag cgcgggattg acttcaaacg acggattttc
     1021 cgtcgtcgca ccaataaagg ttagcaaacc gctttcgaca tgcggcaaaa acgcgtcctg
     1081 ctgcgccttg ttgaagcggt ggacttcatc gacaaacaaa atcgtcgcgc gtccctgctg
     1141 caaagcgatt tcggctttat cgattgcctc gcggatgtcc ttcacgccgg aaaacacggc
     1201 ggaaacaggc aaaaactggg cattgaaact ctgcgccaaa atccgcgcca acgtcgtctt
     1261 gcccacgccc ggcggccccc acagcaacat agaatgcggc ttgccgcctt ctaccgccac
     1321 gcgcaaaggt ttaccttcgc cgatgaggtg ttcctgcccc accacgtcgt caagcgtatg
     1381 cggacgcaat cgttcggcaa gcggcgcgtc gggttctcgg gcaaacaaat cggtcataac
     1441 ggctccgtca acaggttttc aaacaatatg attatacggc agggaacggc ggcgtgccgc
     1501 atacggattc cgcccctccg tttgccttaa gccgatatta ggcgcatact ggaaaagacg
     1561 agagacttca cacaatatat ccggcacgga gaccgattcc gcaccggcat gacaataccc
     1621 aaatcagcgt ttcaattaaa cattaaggag actaaaatag aaaatttgct ttatctacca
     1681 ttgctttgtt gattcaatcg gcattatgtt ttgaggcgga agcccatgaa tatactaata
     1741 ttcaagagat ggaatgggtg tctttatttt ctgatccgca aaaagacgat gatagtctta
     1801 taacccttaa agat
//
LOCUS       DAXIFS010000247         1800 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.247, whole genome shotgun sequence.
ACCESSION   DAXIFS010000247 DAXIFS010000000
VERSION     DAXIFS010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.247"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            118..525
                     /locus_tag="ACFOCA_001956"
                     /pseudo
     CDS             118..525
                     /locus_tag="ACFOCA_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212999.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fe(3+)-pyochelin receptor"
     gene            669..1727
                     /gene="dinB"
                     /locus_tag="ACFOCA_001957"
     CDS             669..1727
                     /gene="dinB"
                     /locus_tag="ACFOCA_001957"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HFC6988601.1"
                     /translation="MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICA
                     ASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLS
                     LDEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN
                     GQFVLPPHKVMAFLETLPLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGR
                     YGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR
                     KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLIARVPPQTEDAFRLI
                     GIGVGHLVPKNQQQDLWA"
BASE COUNT          427 a          485 c          495 g          393 t
ORIGIN      
        1 cagtcgatgt gcttggcaat catggcttgg gcggtttgcc ggaagaaggt gctcatgaga
       61 aatcccctaa atgtcttggt gggaatttag gggattttgg ggaattttgc aaaggtctca
      121 gggtatacct acaataagag caggtatagg aatgcagccg aagtcaacgc cgaacgcctt
      181 gccaaaaatt ccagtgcaga cccgtacaac ttcagcaatt tcacacccgt gcacatattc
      241 cgtttcggaa cgagcttcca tataccgaat acggggctga ccgtcggcgg cggcgtgtcc
      301 gcacaaagcg gcacaagcag cctgtacaac atccgtcagg gcggctacgg gctgatagac
      361 ggtttcgtcc gttacgaatt gggcaaacac gccaaattga gcctcatcgg tacgaactta
      421 aacggacgca cttattttga gaacaactac aaccgtacgc gcggcgcaaa caacttctat
      481 ggagagccgc gcactgtcag catgaaactg gattggcagt tttaattgaa aaccgtagtt
      541 ttgcggatgc cgtctgaaac agggtatgtt tcagacggca tttttatgga ggcaggccta
      601 tcggggcgta tatttggaat ttgcccgatg ccggcagtag aatatccctt ttatcctcag
      661 aagagccgat gtcttcacgc aaaattatcc acatcgacat ggacgcattc tacgcatcgg
      721 tagagctgcg cgaacagccg catttgaaag ggcggccggt ggtcgtcgcg tgggagggcg
      781 cgcgttcggt gatttgcgcc gcatcgtatg aggcacggca gttcgggctg cattccgcga
      841 tgtcggtggc aacggcgaaa aggctgtgtc cgcaagcggt gtatgtgccg ccgcatttcg
      901 atttgtaccg tcaggtttcc gcgcagattc acgccgtatt caggcgttat accgatttaa
      961 tcgaaccctt gtcgctggac gaagcctatc ttgacgttac ccgtaatttc aaaaacatcc
     1021 cttacgccag cgaagttgcc aaagaaatcc gtgccgccat ttttgcggaa acaggtttga
     1081 ctgcatccgc aggcatcgcg ccgaacaaat ttctggcgaa aatcgcgtcg gactggcgca
     1141 agccgaacgg gcagtttgtg ttgccgccgc acaaagtcat ggcatttttg gaaaccctgc
     1201 ctttgggcaa aatccccggc gtgggcaagg taacgctgaa aaaaatgcag tcgctgggta
     1261 tgcggacggc gggcgacttg cgccgtttcg agcgcggcga actcttaaac catttcggac
     1321 gctacggata ccgcctctat gatttggtgc gcggtacgga tgaacgcccc gtcaaagccg
     1381 aacgcgaacg cctccaaatc tccacagaaa tcaccctgcc tgaagacctg ccgctcgagc
     1441 aggctgccgg acacctgccc catcttgctg aagacctgtg gcggcaaatc acgcgcaaaa
     1501 acgtcgaagc ccaaagcgta acgctcaagc tgaagaccta cgatttccgc atcatcacgc
     1561 gcacactgac ttattcctcc gtattgcccg actgcgcagc tctgctgcag gctgcgcaaa
     1621 tgttgatagc gcgcgtcccg ccgcagacgg aagacgcgtt ccgccttatc ggtatcggcg
     1681 tggggcatct tgtgccgaaa aaccagcagc aggatttgtg ggcgtaaacc gctttacgcg
     1741 cgccgtccaa aaaacatgcc gtctgaacgg ttttcagacg gcatggctgc tttataatgg
//
LOCUS       DAXIFS010000248         1757 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.248, whole genome shotgun sequence.
ACCESSION   DAXIFS010000248 DAXIFS010000000
VERSION     DAXIFS010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.248"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            356..1660
                     /locus_tag="ACFOCA_001958"
     CDS             356..1660
                     /locus_tag="ACFOCA_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HFC6988602.1"
                     /translation="MKKHIWAASLLPASLSAEPLNWWKPYSAVNSGDTAWVMTAAALV
                     LLMTLPGLALFYGGMVRKKNLLSTMMHSFSIATLVGILWVAVGYSLAFTPGNAFIGGL
                     GRVFLSGMQIDAAAQMLTVSPNAPTVPEPVFMFFQMTFAIISTAIITGAFAERMKYSA
                     MMLFSGIWFLLVYVPGAHWVWGGGFMSKGGVLDYAGGTVVHINAGIAGLVAALVLGRR
                     IGYGREAMPPHNMAMTLIGAAMLWFGWFGFNAGSALAADAAAGMAMAVTQVSAVFGAA
                     GWLACEKIAGHKPSALGLASGAVSGLVGITPAAGFTGPSGAAAIGILTAAACFVSVTV
                     VKHKLRYDDSLDAFGIHGFGGLVGGILTGIFFDNRIFGGDAAVWQQLWIQVKDGFVMA
                     AYSGLMSWAILKVVGKICGGLRVGKDVEREGLDLNIHGERVE"
BASE COUNT          367 a          435 c          516 g          439 t
ORIGIN      
        1 aattaaaaat ttttaatata ttaatcaata aattaatttt ataaaataaa aatattgtca
       61 acaatatttt gccttatcgc ccaaacctct gtatattttc ctacagtaaa ttgttgacaa
      121 tccatacgcc cacatatgcg ccgcctaagg ataaatcctc ccgccggaca acgggtgcaa
      181 gggattggat gcgatatttc catattcaaa caagggattt gtttcacgca cagggcggca
      241 catcggcaaa atccccgcgc cgccccggtc cggcagggct tgcgtccctc ccggacaagc
      301 cccgaccccg cctttccgaa agacgggctc aaccattaag gaaactttaa tcaaaatgaa
      361 aaaacacata tgggcggcat ctttgctgcc ggcatcccta tcggcagaac ctttaaactg
      421 gtggaagcct tattccgccg tcaattcggg cgataccgcc tgggtgatga ctgcggctgc
      481 cttggtactg ttgatgacgc ttcccgggct ggctttattc tacggcggga tggtgcggaa
      541 aaaaaacctg ctctcgacga tgatgcacag cttttccatc gcgacattgg tgggcatcct
      601 ttgggtcgcc gtcggctatt ctttagcgtt cacgccggga aatgccttta tcggcggttt
      661 ggggcgcgta tttttaagcg ggatgcagat agacgctgcc gcacagatgc tgaccgtgtc
      721 gcccaatgcg ccgactgttc ccgaaccggt atttatgttt tttcagatga cgtttgccat
      781 tatttcgacc gccattatta ccggcgcgtt tgccgaacgg atgaaatatt cggcaatgat
      841 gctgttttcg ggcatatggt ttttattggt ttatgtgccg ggagcgcatt gggtgtgggg
      901 cggcggcttt atgagcaagg gcggcgtatt ggattatgcc ggcggtacgg tggtgcacat
      961 caatgccggt atcgcgggac tcgtcgccgc cttggttttg ggcaggcgca taggctacgg
     1021 gcgcgaggcg atgcctccgc acaatatggc gatgacactg atcggcgcgg caatgttgtg
     1081 gttcggctgg ttcggcttta acgccggatc ggcgcttgcg gcagacgcgg cggcgggtat
     1141 ggcgatggcg gtaacgcagg tgtcggccgt attcggcgcg gcaggctggc ttgcctgcga
     1201 aaaaatagcg ggacacaaac cttccgcttt ggggctggct tccggcgcgg tttccggtct
     1261 ggtcggcatc acccctgccg ccggctttac cggcccgtcg ggcgcggccg ccatcggtat
     1321 attgactgcc gccgcgtgct ttgtgtccgt caccgtcgtc aaacacaaat tgcgttacga
     1381 tgattctttg gacgctttcg gcatacacgg attcggcggg ctggtgggcg gaatattgac
     1441 cggcatcttt ttcgacaacc gcattttcgg cggggatgcg gcagtttggc agcagttgtg
     1501 gatacaggta aaagacgggt tcgttatggc ggcatacagc gggctgatga gttgggcgat
     1561 tttgaaggtc gtggggaaaa tctgcggcgg cctgcgcgtc ggcaaggatg tcgaacgcga
     1621 aggtttggat ctgaatatcc acggcgaacg cgtggaataa gggcggttat gccgtctgaa
     1681 gcctgaaaat cgggtttcag acggcatttt tcacgtttgc cgccgatgga taaacatata
     1741 gtggattaac aaaaatc
//
LOCUS       DAXIFS010000249         1756 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.249, whole genome shotgun sequence.
ACCESSION   DAXIFS010000249 DAXIFS010000000
VERSION     DAXIFS010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.249"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(114..770)
                     /locus_tag="ACFOCA_001959"
     CDS             complement(114..770)
                     /locus_tag="ACFOCA_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HFC6988603.1"
                     /translation="MKNKSKVWDFPTRLFHWLLAASLPFMWYSAKTGGDMLQWHTRVG
                     LFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIREYMKNGIPEHVQPGHNPLGALMVV
                     ALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAIH
                     IAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKTALAAALSVAALVAAAILLLS
                     "
     gene            835..1725
                     /locus_tag="ACFOCA_001960"
     CDS             835..1725
                     /locus_tag="ACFOCA_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HFC6988604.1"
                     /translation="MFPVFHLSGESRRRMLQAASRFPYVFKARAEDSHKGTFGTLAVV
                     GGSAGMRGAPVLAASAAMYLGCGKVWAGFNQDALPFAVIAGFPEIMLDTADGLTKRQG
                     INAWMVGCGLGTDKAAVGTLAGILAEHTDKPVLLDADALNILSTDAETRNLARGCKNL
                     ILTPHPAEAARLLGTTVAQVQADRTAAVRKIRAIFGATVVLKGHKTLVASPDTEIYVN
                     ESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGVWLHGAAADVIKESAGIAAGL
                     LAGEISPAARWLRNRITESM"
BASE COUNT          394 a          417 c          580 g          365 t
ORIGIN      
        1 ggtttgggac ggaaaaacgg cctgaagccg tttcgggcat tcagaccgtt tgcgcggaga
       61 ggggatgccg tccgaagggc gaaaagggct tcagacggca ttgatgtcgg gtttcaggac
      121 aggagcagga tggcggctgc gacaagcgcg gcaaccgata atgcggcggc aagcgcggtt
      181 ttgccggcaa agcggattga ggttttgcct tcgatgtatt tgaagccggt tatcatcggg
      241 aggacgaggt ttttcttttt gaacacgcgg tatgcggcga cggcggcgat atgaatggcg
      301 gaaaaaacgg cgagcagctt gaaaaagttg aggtggattt tccgcataag gctgcccgta
      361 tgctcggaaa ccaaatggtt gaggtagccg ttggtgctga aggtgttttc atcggcggca
      421 aaaagccctg tgccgacttg aaatgagacg gcggccaaaa gcgcgacgac catcagtgcg
      481 cccaaggggt tgtgtccggg ttggacgtgt tcgggaatac cgtttttcat atactctctg
      541 atacccgacc atccgcggac gaaacgggag aaacgggcgg tatcgctgcc ccaaatgccc
      601 cagcagaggc ggaatacgag caggaaaagg ataaacagcc cgacgcgcgt gtgccattgc
      661 agcatatcgc cgccggtttt cgcgctatac cacataaagg gtagggatgc ggcaagcagc
      721 cagtggaaaa ggcgggtggg gaagtcccag actttgcttt tgtttttcat aatcggtttc
      781 cggcggtaga atcggtttgt tttcgagcct taattttaac cgattggagg ggaaatgttt
      841 cccgttttcc atctttcagg cgaaagccgc cgccggatgc ttcaggcggc atcgcgtttt
      901 ccctatgttt tcaaagcccg tgcggaagat tcgcacaaag ggactttcgg cacgctcgcc
      961 gtagtcggcg gatcggcagg gatgagaggc gcgcccgtat tggcggcatc ggcggcgatg
     1021 tatctcggct gcggcaaggt gtgggcgggt ttcaatcagg atgcgcttcc gtttgccgtc
     1081 attgccggtt ttcccgaaat tatgttggac acggcagacg gtttgaccaa gcgtcaaggc
     1141 ataaacgctt ggatggtagg ttgcggcctg ggtacggata aagcggcggt cggaacgctt
     1201 gccggaattt tggcggaaca cacggacaag cccgtccttt tggatgcgga cgcgctgaac
     1261 atattatcaa ccgatgccga aacccgaaat ctggcgcgcg ggtgtaaaaa cctgatttta
     1321 acgccacacc ccgccgaagc cgcgcgcctg cttggaacga cggttgcaca ggttcaggcg
     1381 gatcggacgg cggcagtgag gaagataagg gcaattttcg gcgcaaccgt ggttttaaag
     1441 gggcacaaaa cattggttgc ctcacccgat acggaaatct atgtcaacga aagcggcaac
     1501 gcgggattgg caacggcggg cagtggcgac gtattgggcg gcatcatcgg cagtctgctc
     1561 gcacagggcg tgccggtttt tgaagccgcc tgcgcgggcg tgtggctgca cggcgcggcg
     1621 gcggatgtca taaaagaatc ggcaggcatt gcggcggggc tgttggctgg cgaaatctcc
     1681 ccggcggcaa ggtggctgcg caaccggata actgaaagta tgtaagaaga tatagtggat
     1741 taacaaaaac cagtac
//
LOCUS       DAXIFS010000250         1700 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.250, whole genome shotgun sequence.
ACCESSION   DAXIFS010000250 DAXIFS010000000
VERSION     DAXIFS010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.250"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            35..922
                     /gene="prmA"
                     /locus_tag="ACFOCA_001961"
     CDS             35..922
                     /gene="prmA"
                     /locus_tag="ACFOCA_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFC6988605.1"
                     /translation="MPYQQITINVNDAVAERLADALMEHGALSAAIEDAYAGTQNEQA
                     IFGEPGMPAEQIWQQSKVIALFGEHDEAAAIIQIAAQECGLKDLAYTGETIEDQDWVR
                     LTQSQFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQ
                     LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGKDNAEQNNVDAQFFLP
                     DGLPQGQFDVVVANILANPLRMLGEMLAARTKQGGRIVLSGLLDEQAEELGGIYSQWF
                     DLDPAETEEGWARLSGTKR"
     gene            940..1503
                     /gene="orn"
                     /locus_tag="ACFOCA_001962"
     CDS             940..1503
                     /gene="orn"
                     /locus_tag="ACFOCA_001962"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HFC6988606.1"
                     /translation="MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEV
                     YAVHQSDELLDNMDEWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATP
                     MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPSVAKSVVKRGSHKAL
                     DDILESIEEMRHYREHFLISAPRAEAQ"
BASE COUNT          450 a          529 c          422 g          299 t
ORIGIN      
        1 aattcaatcc actatatttc caagaaagcc cgttatgccc taccaacaaa tcaccatcaa
       61 cgtcaacgat gccgtcgccg aacgcctcgc cgacgcgctg atggaacacg gcgcactctc
      121 cgccgccatc gaagatgcct acgccggcac gcaaaacgaa caggcgattt tcggcgaacc
      181 cggtatgccc gccgaacaaa tctggcagca gagcaaagtc atcgccctgt tcggcgaaca
      241 cgacgaagcc gccgccatca tccaaatcgc cgcacaagaa tgcgggttaa aagacttggc
      301 atacaccggc gaaaccatcg aagaccaaga ctgggtgcgt ctcacgcaat cgcaattcga
      361 ccccatccga atttccgacc gcctgtggat taccccctct tggcacgaag cccccgaagg
      421 cactgccgtc aacctacgcc tcgatcccgg cctcgccttc ggcactggca gccacccaac
      481 cacgcgcctc tgcctcaaat ggctggatac gcaactcaaa aacggcgaaa gcgtcctcga
      541 ctacggctgc ggttcgggca tcctgaccat cgctgccctc aaactcggcg caggttctgc
      601 cgtcggcgtc gatattgacg aacaagccgt ccgcgccggc aaggacaacg ccgaacaaaa
      661 caacgtcgat gcacaattct tcctgcccga cggcctgcct caagggcaat tcgacgtagt
      721 tgtcgccaac atcctcgcca accctttacg tatgctcggc gaaatgctcg ccgcccgcac
      781 caaacaaggc ggccgcatcg tgttatccgg tttgttggac gaacaagccg aagaactcgg
      841 cggcatttac agccaatggt tcgatctcga cccggcggaa accgaagaag gctgggcgcg
      901 cttgagcggg acaaaacgct gaaacggaaa ggaaacaccg tgcaggacaa aaacaacctc
      961 tgctggctcg atatggaaat gacggggctt aatcccgaaa ccgaccgcat tatcgaagtc
     1021 gcgatgatta ttaccgactc ggatttgaat gtattggcgc aatccgaagt ttacgccgtc
     1081 caccaaagcg acgagctgct cgacaatatg gacgaatgga acaccgccac acacggtagg
     1141 acggggctga cacagcgcgt gcgcgaatcg ttgcataccg aagccgaagt cgaacagaaa
     1201 ctgctggact ttatgtcgga atgggtaccc ggacgcgcca cgccgatgtg cggcaactcc
     1261 atccaccaag accggcgttt tatggtcaaa tatatgccga aactggaaaa ctacttccac
     1321 taccgcaacc tcgacgtttc cacgctcaaa gagcttgcca aacgctggaa tccgtccgtt
     1381 gccaaaagcg tcgtcaaacg cggttcgcac aaggcattgg acgacatttt ggagagcatc
     1441 gaagaaatgc gccactaccg cgaacacttt ctgatttccg ccccgagagc cgaagcgcaa
     1501 taagaaacaa aaaatgccgt ctgaagcgca aatcctgcat ttcagacggc atttttacag
     1561 cagattgaaa tcaaaaatat acacgcccgt cattcccgcg caggcgggaa tccggaaggt
     1621 cgggcctgcc gttattttca atcattacag aaactgaaag gtctggattc ccgcctgcgc
     1681 gggaatgacg ggcgtgtgca
//
LOCUS       DAXIFS010000251         1692 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.251, whole genome shotgun sequence.
ACCESSION   DAXIFS010000251 DAXIFS010000000
VERSION     DAXIFS010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.251"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..636
                     /gene="mafB"
                     /locus_tag="ACFOCA_001963"
     CDS             <1..636
                     /gene="mafB"
                     /locus_tag="ACFOCA_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6988607.1"
                     /translation="LGNLSPETQLAAASLLQDSAFAVKDGINSARQWADAHPNITATA
                     QTALAVAEAATTVWGGKKVELNPTKWDWVKNTGYKKPAARHMQTVDGEMAGGNRPPKS
                     ITSNSKADASTQPSLQAQLIGEQISSGHAYNKHVIRQQEFTDLNINSPADFARHIENI
                     VSHPTNMKELPRGRTAYWDDKTGTIVIRDKNSDDGGTAFRPTSGKKYYDDL"
     gene            646..852
                     /locus_tag="ACFOCA_001964"
     CDS             646..852
                     /locus_tag="ACFOCA_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988608.1"
                     /translation="MNILSINNQNSTISLTQDEVFVLRAILNEIYAGVCVDSREFENV
                     SGVRKHEVDNLQQQFAGIYKKMTT"
     gene            880..1235
                     /locus_tag="ACFOCA_001965"
                     /pseudo
     CDS             880..1235
                     /locus_tag="ACFOCA_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504007.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1232..1603
                     /locus_tag="ACFOCA_001966"
     CDS             1232..1603
                     /locus_tag="ACFOCA_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6988609.1"
                     /translation="MIKQNSFVPYPEAMLPKGFKYPQSYLKLAQSTHAINYDEQYSFP
                     WWFENAESNISEVIDIYFEITGIPNLLPFARNQEWAACFDISDKSGNPKIIVVNLDNT
                     KYYETFENFDTWLKEAENDGW"
BASE COUNT          605 a          287 c          350 g          450 t
ORIGIN      
        1 ttaggaaatt taagtccaga aacacaactt gctgccgcga gcctattaca ggatagtgct
       61 tttgcggtaa aagacggcat taattccgcc agacaatggg ctgatgccca tccgaatata
      121 actgcaacag cccaaactgc ccttgccgta gcagaggccg caactacggt ttggggcggt
      181 aaaaaagtag aacttaaccc gaccaaatgg gattgggtta aaaataccgg ctataaaaaa
      241 cctgctgccc gccatatgca gactgtagat ggggagatgg caggggggaa tagaccgcct
      301 aaatctataa cgtccaacag caaagcagat gcttccacac aaccgtcttt acaagcgcaa
      361 ctaattggag aacaaattag tagtgggcat gcttataaca agcatgtcat aagacaacaa
      421 gaatttacgg atttaaatat caattcacca gcagattttg ctcggcatat tgaaaatatt
      481 gttagccatc caacaaatat gaaagagtta cctcgcggta gaactgcgta ttgggatgat
      541 aaaacaggga caatagttat ccgagataaa aattctgacg atggaggtac agcatttaga
      601 ccaacatcag gtaaaaaata ttatgatgat ttataggaaa aagccatgaa tatactatcc
      661 ataaataatc aaaactcaac tatttcacta actcaagatg aagtttttgt tttacgagct
      721 atcttgaatg agatatatgc gggcgtatgt gtagattcaa gagaatttga aaatgtatct
      781 ggtgttagaa aacatgaagt agataattta caacaacagt ttgctggaat ttataaaaaa
      841 atgacaactt aacaacccaa atttttgtca gagcctagtg caaattacaa ctatgattct
      901 attgtagccg aaatgaaaga aaaaaatcat gggttggcga cagggttgat gttgttaata
      961 tgcctgatgg agcacctact agtatggata acacgcgtat tatggcagca cgtgaagcag
     1021 gggtaaaagt ggaagcgaat gttcataatt ttaatgaccg attatcatca aaagagagaa
     1081 tcaggtttaa gcatgatggt attgagcctc aaacttgggg agaagctatc cagctacgaa
     1141 ttagaaagca agaaacacaa aaaggagttc cagaagggtg gagcaaaaga tttcctaacg
     1201 gaagtattta tgatgtaaag gtacttagga aatgataaaa caaaatagtt ttgttccgta
     1261 tcctgaagca atgcttccta aaggatttaa atatccgcaa agttatttaa aattagctca
     1321 atccactcat gccattaact acgatgaaca atattctttt ccttggtggt ttgaaaatgc
     1381 agaaagcaat atatcagaag taattgacat ttattttgaa ataactggca ttccaaacct
     1441 attacctttt gctagaaacc aagagtgggc tgcctgtttt gatatttcag ataaatcagg
     1501 taatcctaaa attatagtag ttaatttaga taatacaaaa tattacgaga cttttgaaaa
     1561 ttttgatact tggctaaaag aagctgaaaa tgatggttgg tagcagccgt aggtcggatt
     1621 ctcgaatccg acattttcca acagcggcat ttcggaaacg atagacgcgt caaatatttt
     1681 tgtcggatac aa
//
LOCUS       DAXIFS010000252         1643 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.252, whole genome shotgun sequence.
ACCESSION   DAXIFS010000252 DAXIFS010000000
VERSION     DAXIFS010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.252"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(190..1272)
                     /gene="porB"
                     /locus_tag="ACFOCA_001967"
     CDS             complement(190..1272)
                     /gene="porB"
                     /locus_tag="ACFOCA_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric porin PorB"
                     /protein_id="HFC6988610.1"
                     /translation="MKKSLIALTLAALPVAAMADVTLYGTIKAGVEVSRVKDAGTYKA
                     QGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGL
                     KGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVF
                     AGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNT
                     DAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSTKGKKHEQ
                     TQVAATAAYRFGNVTPRVSYAHGFKAKVNGMKDANYQYDQVIVGADYDFSKRTSALVS
                     AGWLKQDKGAGKVEQTASMVGLRHKF"
BASE COUNT          397 a          367 c          403 g          476 t
ORIGIN      
        1 ctagattccc actttcgtgg gaatgacgga atgtaggttc gtgggaatga cggcggagaa
       61 gtttctgctt tcccgataaa tgcccactct cgtgggaatg aaggctgccg cattaaatag
      121 caaacgaatc atttcaaata aaaaagcctg tctgacgaca ggctttttgt tgataccaat
      181 cttttcagat tagaatttgt gacgcagacc aaccatgctg gcagtttgtt cgacttttcc
      241 cgcgccttta tcttgtttca accaaccggc agaaaccaga gcggaagtgc gtttggagaa
      301 gtcgtagtcg gcaccaacga taacttggtc gtattggtaa tttgcgtctt tcatgccatt
      361 cactttagct ttgaagccgt gggcgtaaga aacgcgaggc gttacgttgc caaaacggta
      421 agcggcagta gcggcaactt gagtttgctc gtgtttttta cccttggtag aaccaacctc
      481 gttgttttta gcagcttcat actgaccggc aacagaaacg tacaggtcat tggcatcgta
      541 accggcaact acgcggtgta cttggtaatc cttaacagga tgggcatttg cagtatttac
      601 tgcaacacgt tctgcatcag tgttcaaatc agcatatttg gcaaaagaac ctgcgtattg
      661 accgaagaaa ccggcatttt cgtatttcag accggcgtgg taagactcac ggctggactt
      721 cgtatgtttg tatttatcca catcattcgc attatcgcgc ggaacgtatt gtacgctgcc
      781 gctgaagcct gcaaatacgg gagagtcgta gcgtacggag atttcacggc tttctacacg
      841 accgatagta cccagtccca gtacatcttc ggtgttagaa ccagattccc atgcattgac
      901 gttgtcgccg ctgtctttca atacggtgtt cagattaccg gcgcggacgg taccgaagcc
      961 gcctttcaag ccgatgaagg actggcggtt accccagccg ctgttagtgc cggcgatgga
     1021 ggctttttgt tccaactgcc aaatggcttt catgccgttg ccgaggtctt cttgaccttt
     1081 gaaaccgatt ttagaaccga agtcggcaat ttgggttgca gttttagatt ttccgccttg
     1141 agctttatat gtaccagcat cttttacgcg agaaacttct acgcctgctt taattgtacc
     1201 gtacaaggta acgtcagcca ttgctgcaac aggcagggca gccagtgtca gggcaatcag
     1261 ggattttttc attgctgtat tccttttcat agttaagaaa tttaagccag ccgggctttc
     1321 caagccgctt agctttgcat ttaccgccga cgttttcggc gattccatgt ctgaaactat
     1381 agatgttcct gtctgaaaaa acaaacttct gcctgttttt gtgtggaatt cgatgtgtat
     1441 tttgaagggc ggatagagat attgtgggta ttttttgttt tataacatat ggttatttaa
     1501 attttttaag atttgcattt ttacaacact tactcgggag ggtattggag ggcattgcaa
     1561 accgggggtt ataaagacgg caaaaaacgc gcacgtggtt tctttcggaa cgggcggatg
     1621 caaaacccga ccctgcggca gga
//
LOCUS       DAXIFS010000253         1623 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.253, whole genome shotgun sequence.
ACCESSION   DAXIFS010000253 DAXIFS010000000
VERSION     DAXIFS010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.253"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..400
                     /locus_tag="ACFOCA_001968"
     CDS             <1..400
                     /locus_tag="ACFOCA_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BRCT domain-containing protein"
                     /protein_id="HFC6988611.1"
                     /translation="ELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMP
                     SEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVV
                     AGEAAGSKLEKANALGVSVLSEAELLTLLG"
     gene            457..>1623
                     /gene="hemW"
                     /locus_tag="ACFOCA_001969"
     CDS             457..>1623
                     /gene="hemW"
                     /locus_tag="ACFOCA_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFC6988612.1"
                     /translation="MHTISFPNRTRLTALPPLSLYIHIPWCIKKCPYCDFNSHSLKNG
                     LPEAAYIDALLTDLQLELPNIWGRPVETIFFGGGTPSLFQAESIDRLLSGVRSLLRLQ
                     PEAEITLEANPGTFEIEKFQGFKDAGITRLSIGVQSFNDDMLSRLGRVHNGKEALTAI
                     DTALKLFDKVNIDLMYALPNQTVQTALDDVQTAIATGATHISAYHLTMEPNTPFGHTP
                     PKGLPQDEAALDIEDAVHGALEGAGFVHYETSAFAKPAMQCRHNLNYWQFGDYLGIGA
                     GAHGKISYPDRIERTVRRRHPNDYLALMQSQPGEAVERKTVAAEDLPFEFMMNALRLT
                     DGVPAAMLQERTGIPAAQIMAQIETARQKGLLETDPAVFRPTEKGRLFLNDLLQC"
BASE COUNT          407 a          505 c          407 g          304 t
ORIGIN      
        1 ggaactcgct ggtaaaaaca tagaaggtct acaaaacgac aaagccctcc ccgccgactg
       61 gcaagcatgg cgcagcgaac cacaaaacgc cgccctactc gaaaacctga aaaccttctt
      121 cgcgcaaatg ccgtctgaag acgaggcggc gcaaggttca gacggcatca ataaagccgt
      181 agcaggcaaa acctttgtat taaccggcac cctgcccacg ctcaaacgcg accaagccca
      241 atccctaatc gaagccgcag gcggcaaagt ttccggcagc gtgtccaaaa aaaccgacta
      301 cgtcgtcgcc ggagaagccg cgggcagcaa gctggaaaaa gccaatgcct tgggcgtttc
      361 cgtcctcagc gaagccgaac tgcttaccct gctcggctga acctatgccg tctgaaccgc
      421 cttcagacgg cattgtccac ttttccgaac cacaccatgc acaccatttc ctttccaaac
      481 cgcacccgac tcaccgccct gccgcccctg tcgctttaca tccacatccc gtggtgcatc
      541 aaaaaatgcc cgtattgcga ctttaattcc cacagcctga aaaacggatt gcccgaagcc
      601 gcctatatcg acgcgctgct gaccgacttg cagctcgaat tgcccaatat ttggggcagg
      661 ccggtggaaa cgatcttttt cggcggcggt acgcccagcc tgtttcaggc ggaatcgatt
      721 gaccgtttat tgagcggcgt gcgttcgctg ttgcgcttgc agccggaagc ggaaattacc
      781 ttggaagcca atccggggac atttgaaatc gagaagtttc aaggatttaa agacgcaggc
      841 atcacgcggc tttctattgg tgtacagagt ttcaacgacg atatgctctc aaggctgggg
      901 cgcgtccaca acggcaagga agccttaacc gctatcgata ccgccttgaa attatttgat
      961 aaagtcaata tcgacttgat gtatgccctg ccgaaccaaa ccgttcagac ggcattggac
     1021 gacgtacaaa ccgctatcgc tacgggcgcg acccacatca gcgcgtatca tctgacgatg
     1081 gaaccgaaca cgccgttcgg tcatacgccg ccgaaaggtt tgccgcaaga cgaagccgcc
     1141 ctcgacatcg aagacgcggt acacggcgcg ctggaaggcg cgggttttgt ccactacgaa
     1201 acatcggctt ttgcgaaacc agccatgcag tgccgccaca atttgaacta ctggcagttc
     1261 ggcgattatt taggcatagg cgcgggtgcg cacggcaaaa tttcctatcc cgaccgcatc
     1321 gagcgcaccg tccgccgccg ccaccccaac gactacctcg ccttaatgca aagccaaccg
     1381 ggcgaagccg tcgaacgcaa aaccgtcgcc gccgaagatt tgccgtttga gttcatgatg
     1441 aacgccctgc gcctgaccga cggcgtaccc gccgcgatgt tgcaggaacg cacgggcata
     1501 cccgccgccc aaatcatggc gcaaatcgaa acggcaaggc aaaaaggcct gctggaaacc
     1561 gaccctgccg tattccgccc gaccgaaaaa ggacgcttgt ttttaaacga tttgctgcag
     1621 tgt
//
LOCUS       DAXIFS010000254         1611 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.254, whole genome shotgun sequence.
ACCESSION   DAXIFS010000254 DAXIFS010000000
VERSION     DAXIFS010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.254"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(42..365)
                     /locus_tag="ACFOCA_001970"
     CDS             complement(42..365)
                     /locus_tag="ACFOCA_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6988613.1"
                     /translation="MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVL
                     IVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKARLVKHLGNLDNSTAEKLFAVL
                     QEMFA"
     gene            complement(353..592)
                     /locus_tag="ACFOCA_001971"
     CDS             complement(353..592)
                     /locus_tag="ACFOCA_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="growth regulator"
                     /protein_id="HFC6988614.1"
                     /translation="MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCP
                     TVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW"
     gene            complement(715..1512)
                     /gene="truA"
                     /locus_tag="ACFOCA_001972"
     CDS             complement(715..1512)
                     /gene="truA"
                     /locus_tag="ACFOCA_001972"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFC6988615.1"
                     /translation="MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQI
                     AGEAVSTTVAGRTDTGVHATAQVVHFDTTAARPQQAWVRGVNAHLPEGIAVLHARQVA
                     PEFHARFDAYGRHYRYLLESVPVRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFS
                     SFRAAECQAKSPVKTIYRADLTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLS
                     VEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL"
BASE COUNT          352 a          384 c          470 g          405 t
ORIGIN      
        1 ttaatccact ataatgaaca caatcaattc agactattca atcaggcaaa catctcctgc
       61 aatactgcaa acagtttttc agccgtactg ttgtctaaat ttccaagatg cttgaccaat
      121 ctggctttat ccacagccct aatctgttcg ggcaaaagca aaccgtcttt atcctgaaag
      181 cggacattga cgcggaacgg ggcaggacgg cttccgctcg tcataggaac gatcagcaca
      241 gtcttgagat agttgtgtat ttcaggagga gatactacga cacaaggacg tgtctttttg
      301 atttcgcttc ctacggtcgg gtctaaggag accagataga ttccgccgcg tactaccata
      361 tccattcttt atccgcttcg ttttcaattt cggaaaaaaa atgctcctgc tcggtttcga
      421 caagcattgc ggcagcttct gcccatcccc tgcgaacggt aggacagctt aaaatgatat
      481 tgcccttttc aactgtaaca gccaagctgt ctactgcccc tatttgaccc aataatgatt
      541 tgggcagaat cacgccttgc gagtttccca ttttgcgtat gttgagaatc atatacgtac
      601 catattcacc agtttatgta ataacaatgt tagtaccttg atgaggtagt gtcaacattg
      661 aaaaagattg cctgacagtt tgtccgattt caaaatctcc gcgacaagaa tgttttaaag
      721 ccattcgggg atttgggggc ggatgatgcc gtatgcctcg ggatagtcga cgccggtcag
      781 gtaaagtccg tcgggcatga aggtcggcgg ggctttgagg cggctgcgtt cttgaatcag
      841 tgcggcgaag ccttcgacgc tgagtctgcc gctgccgaca tagacgagcg cgcccatgat
      901 gttgcgtacc atatggtgca aaaaggcgtt gccgtgcaaa tcgaggcgga cgagtcctga
      961 gctttgggta aggtcggcgc ggtagatggt tttgacgggg gattttgcct ggcattcggc
     1021 ggcgcggaag ctggagaagt cttgttcgcc gatcaataag gcggcagccc ggcgcatcgg
     1081 cccgatgtcg agtttgaggt gtgtccagcc tgccctgttt ttgagcaggg gggaacggac
     1141 ggggacggat tcgagcaggt agcggtaatg ccgtccgtat gcgtcgaagc gggcgtgaaa
     1201 ttcgggggcg acctgtcggg cgtgcaaaac ggcaatgcct tcgggcaggt gggcatttac
     1261 gccgcgcacc catgcctgtt ggggacgggc ggcagttgtg tcgaagtgga cgacttgggc
     1321 ggtggcatgc acgccggtgt cggtcctgcc ggcaacggtg gtggaaaccg cttcccctgc
     1381 tatttgggcg agcgcggttt ccaatgccgc ctgaacggtc ggtacgccgt cagcctgttt
     1441 ctgccagccg taaaagcggc tgccatcata ggatagggtt attgcccagc gttgtttttg
     1501 tgcggtatcc atcggatttg ggattcggat aaatgttcag actgcattgt atcgcagatt
     1561 ttgcagggaa acggcaaatg cccggggcgc gcggcgttgt ttggggagtt g
//
LOCUS       DAXIFS010000255         1603 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.255, whole genome shotgun sequence.
ACCESSION   DAXIFS010000255 DAXIFS010000000
VERSION     DAXIFS010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.255"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            170..355
                     /locus_tag="ACFOCA_001973"
     CDS             170..355
                     /locus_tag="ACFOCA_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988616.1"
                     /translation="MDGFVVPAKAGIRNQKPQKFIGKTETQKQRKPNGQDSRLRGNDG
                     SYITQKIETKQMGFPLA"
     gene            complement(870..1256)
                     /locus_tag="ACFOCA_001974"
     CDS             complement(870..1256)
                     /locus_tag="ACFOCA_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HFC6988617.1"
                     /translation="MRKILLDTHALLWWLLDDKKLGTSARKLIENPRNAIFVSAASIW
                     EISIKQNKGLLKLPEEFFDVLQEEDFEMLPIGLFHAKQAGSLPEIHKDPFDRMLIAQT
                     QAEGFELMTVDEYIPQYGIRVVNASS"
     gene            complement(1253..1498)
                     /locus_tag="ACFOCA_001975"
     CDS             complement(1253..1498)
                     /locus_tag="ACFOCA_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFC6988618.1"
                     /translation="MFQANIHQAKTNLSQLIQRAEAGEIVIIAKAGKPCVQLTGIEKP
                     ARNAGRLKKFSHMGNTDISRILEDDNETAALFEESAL"
BASE COUNT          442 a          369 c          328 g          464 t
ORIGIN      
        1 ggatgtaaaa tctcaagaaa ccgttttatc cgataagttc ctgcactgac agacctagat
       61 tcccgcctgc gcgggaatga cgggatttta ggtttctgat tttggttttc tgtccttgtg
      121 ggaatgacgg gatgtaggtt cgtaggaatg acgtggtgca ggtttccgta tggatggatt
      181 cgtcgttccc gcgaaagcgg gaatccggaa ccagaaacca caaaaattta tcgggaaaac
      241 cgaaactcaa aaacaacgga aaccgaacgg acaggattcc cgcctgcgcg ggaatgacgg
      301 ctcatacatc acccaaaaaa ttgaaaccaa acagatggga ttccctcttg cgtgaggctg
      361 acagatgccg tctgaaagac tttcagacgg catagctttt tctctttgaa tttatagtgg
      421 attaacaaaa atcaggacaa ggcggcgagc cgcagacagt acagatagta cggaaccgat
      481 tcactcggtg cttcagcacc ttagagaatc gttctctttg agctaaggcg aggcaacgcc
      541 gtactggttt ttgttaatcc actataaaac acagccatat atattaagta cctgctcttt
      601 atgcgctttt ttaggaaagg aagatcaaac ggttcaatag cgaagtcttg cccaaatttg
      661 atggacagga tatagaatac atgcgtgcat accacaccct gccaaagttg ggagatgcac
      721 ttaaggttgc acttgtggtc gccaactatg cctatacacg cggatttccc gcgtttatag
      781 gccgcgacgg aagtctggct tttaagcgaa gacaataacc gaaaagaccg cctcggcggt
      841 ctttcttgtg tacacagttt ttgtatttgt cagcttgatg cattgacaac tctaattcca
      901 tattgcggaa tatattcatc gacagtcatc agttcaaagc cttccgcttg ggtttgtgca
      961 atcaacatcc tatcgaaagg gtctttgtgt atttccggaa ggcttccagc ctgttttgca
     1021 tgaaacagac ctataggcag catttcaaaa tcctcttctt gaagcacatc aaaaaactct
     1081 tccggtaatt tcaacaaccc cttgttctgc ttgatggaaa tttcccaaat acttgctgca
     1141 ctgacaaaga tcgcatttct cggattttct atcagtttgc gtgcagatgt ccccagtttc
     1201 ttgtcatcca acaaccacca cagcaaagca tgggtatcaa gcagaatctt tctcacagag
     1261 ccgactcctc aaataaagct gccgtttcat tgtcatcctc aagaatacgt gaaatatccg
     1321 tatttcccat atgactgaat tttttcaacc ttcctgcatt tcgtgccggt ttttcaatac
     1381 cggttagttg gacgcaaggc ttacctgctt tcgcaataat aacgatttcc cctgcttctg
     1441 ctctttgaat caattgactc aaattggttt ttgcctgatg aatatttgct tgaaacataa
     1501 cacttctcat gattagctaa cttaactaat atacatcatt accaagattt tgggaatctc
     1561 attacatata tttgattata tccgccgttt tattcacacc ttg
//
LOCUS       DAXIFS010000256         1602 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.256, whole genome shotgun sequence.
ACCESSION   DAXIFS010000256 DAXIFS010000000
VERSION     DAXIFS010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.256"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            110..559
                     /locus_tag="ACFOCA_001976"
     CDS             110..559
                     /locus_tag="ACFOCA_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6988619.1"
                     /translation="MTDNRGFTLVELISVVLILSVLALIVYPSYRNYIEKAKINAVRA
                     ALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLKAV
                     AIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK"
     gene            complement(649..1043)
                     /locus_tag="ACFOCA_001977"
                     /pseudo
     CDS             complement(649..1043)
                     /locus_tag="ACFOCA_001977"
                     /inference="COORDINATES: protein motif:HMM:NF017953.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
     gene            1256..>1602
                     /locus_tag="ACFOCA_001978"
     CDS             1256..>1602
                     /locus_tag="ACFOCA_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988620.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEHYLNRQKTR
                     YLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYS
                     TLCRYRNWLAQDDT"
BASE COUNT          464 a          313 c          336 g          489 t
ORIGIN      
        1 tataccggcc gctaaaaaat agagtgggaa atatgcatac tgttgaatgg gatagtaagt
       61 ctgttcaaag aaatatgttg aataatctgt tcttattgga agtaaagtaa tgactgataa
      121 tcgggggttt acgctggttg aattaatatc agtggtcttg atattgtctg tacttgcttt
      181 aattgtttat ccgagctatc gcaattatat tgagaaagca aagataaatg cagtgcgggc
      241 agccttgtta gaaaatgcac attttatgga aaagttttat ctgcagaatg ggagatttaa
      301 acaaacatct accaaatggc caagtttgcc gattaaagag gcagaaggct tttgtatccg
      361 tttgaatgga atcgcgcgcg gggccttaga cagtaaattc atgttgaagg cggtagccat
      421 agataaagat aaaaatcctt ttattattaa gatgaatgaa aatctagtaa cctttatttg
      481 caagaagtcc gccagttcgt gtagtgacgg gctggattat tttaaaggaa atgataagga
      541 ctgcaagtta cttaagtagg cttgtttaca aatcgatcga tagtgtttca gtatttgtgc
      601 ggttttccgc cttgatggaa tgaaaatcgt gtaatattaa gcctatagtt atgactcgta
      661 atctgtatct ggattgtttc tggataaaag aataaaccca atcgttgggt cgtttgggtt
      721 tatttcattg attgacagaa gttttttaat aaatggaaag acaacgcctt ttttagggga
      781 tggttttgtt tttctctctg atattgccta taggtttctg ccccttccat tctaaatata
      841 ttatccgatt cggataagtc gaatagggca cttgatgcta agccgattac aagtcgtttc
      901 gataaatcat aggacataat aaggatatct ttagccgtgg atttatgggg catagtagca
      961 aaaattgtat aagggtgtac attactcatc tgaaaaggtg aacagatttt ataatgccgt
     1021 ctgaagatgt tttcagacgg cattttgttt ccaattcgtt ataggcttgt attttgccta
     1081 tgcaatatat agtggattaa atttaaacca gtacagcgtt gcctcgcctt gtcctgattt
     1141 aaatttaatc cactatggta atttaaggca tgtttgcacc tttagacata aggagacctt
     1201 tgcaaaattc cccaaaatcc cctaaattcc caccaagaca tttaggagat ttctcatgag
     1261 caccttcttc cagcaaaccg cccaagccat gattgccaaa cacatcgacc gtttcccgct
     1321 attgaagttg gaccaggtga ttgattggca gccgatcgaa cactacctga accgtcaaaa
     1381 aacccgttac cttagagacc accgcggccg tcccgcctat cccctgttgt ccatgttcaa
     1441 agccgtcctg ctcggacaat ggcacagcct ctccgatccc gaactcgaac acagcctcat
     1501 cacccgcatc gatttcaacc tgttttgccg ttttgacgaa ctgagcatcc ccgattacag
     1561 caccttatgc cgctaccgca actggctggc gcaagacgac ac
//
LOCUS       DAXIFS010000257         1583 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.257, whole genome shotgun sequence.
ACCESSION   DAXIFS010000257 DAXIFS010000000
VERSION     DAXIFS010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.257"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(210..1577)
                     /locus_tag="ACFOCA_001979"
                     /pseudo
     CDS             complement(210..1577)
                     /locus_tag="ACFOCA_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224807.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
BASE COUNT          292 a          430 c          509 g          352 t
ORIGIN      
        1 tcttgccgga tgctgcaaac aacgccggtt tgcattcctg atggcggtgg ttttcttaga
       61 cgaacgcccg aacacgcagg aatggatagg cttggggctg gttacggcgg gcgtgttgac
      121 gctggcactg aaacggtaaa gccgcaagaa ataaatgaaa tgccgtctaa aaaactgttt
      181 tcagacggca ttttcgtttc tgtccatcct cagcactcga ccacgcgcac ggatacgggg
      241 acggcttttt tccggagcgt ggcggcgagt ccggcaagcg aggtttcttt gtaggtcgcc
      301 ttcatatccc ggccggtttg cagcatggtt cggatgactt cgtcgagcga gacttttttg
      361 tccgtgccgt cttccaaaag cgcgagcgtg ccgagtttga gggctttttc ggcggcgatg
      421 ccgttgcgct cgatgcaggg gatttgcacc agtccgccga cggggtcgca agtcagcccc
      481 aaatggtgtt ccatcgccat ttcggcggcg ttttccactt gtttgggcgt gccgccgatg
      541 acttcggcgt atgcgcccgc cgccatcgaa cacgctacgc cgacttcgcc ctgacagccg
      601 acatccgcac cggaaatgga ggcgttggtc ttgtagagga tgccgattgc gcctgcggtg
      661 agcaggaagt tttcgacgcg ttcctgtgtg gcgtgcggat tgaacttgcg gaaatagtgc
      721 aatacggcgg gaatgatgcc tgccgcgccg ttggtcggtg cggtaacgac gcgtccgccg
      781 gcggcgtttt cttcgttgac cgccatggcg tacaccatcg gccagagctg ggtgttgacg
      841 atttcggttt cgcgcaggac tttgagcttg gcggcaagct gcggggcgcg gcggcggacg
      901 ttcaatcagc cgggcagttc gccgtccgca cccaagccgc gtttgatgca gccttccata
      961 acctcggcaa cggcagcggc gcggcggcgg atttcggctt cgccgcatcc ggcaagcgcg
     1021 gcttcgtttg ccaacacgac ttcggagatg tcgagccggt tcagacggca tcgggcaagc
     1081 agttcggcgc aactggtata gggataggga acggcttttt ccgtttccgc ctgccggtca
     1141 aaatcttctt cggtaacgac aaagccgccg ccgaccgaat aataaacctg ttcattcaat
     1201 accgtgccgt ctgaagcata ggcggtaaaa cgcaggctgt tggggtgttt gggcagcact
     1261 tgattgccga gtatgttcag gtcgcggtcg gggatgaagc ggatttcttg cccgttgagc
     1321 cggaggatgt gctgcgtgcg gatgcgttcg aggcgttcgg gaatgccggc aagcgggatg
     1381 tcgtgcggca ggctgccttc caaaccgagc atcagcgcgt caaatgtacc gtgtccgtat
     1441 ccggtcagtg cgagcgagcc gtaaatgtcg atgacgatgc gaacagcctg tgcatccaaa
     1501 cctgccgcaa aggcggcggc tgccttcatc gggccgaccg tatgcgaact ggaaggcccg
     1561 ataccgattt tgaaaatata gtg
//
LOCUS       DAXIFS010000258         1556 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.258, whole genome shotgun sequence.
ACCESSION   DAXIFS010000258 DAXIFS010000000
VERSION     DAXIFS010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.258"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(178..1221)
                     /gene="argC"
                     /locus_tag="ACFOCA_001980"
     CDS             complement(178..1221)
                     /gene="argC"
                     /locus_tag="ACFOCA_001980"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFC6988621.1"
                     /translation="MSKKIKVGIVGATGYTGVELLRLLAAHPDVEVAAVTSRSEAGTA
                     VADYFPSLRGVYGLAFQTPDEAGLEQCDIVFFATPNGIAMKDAPRLIEQGVRVIDLSA
                     DFRIWDIPTWEHWYGMPHAAPGLVSQAVYGLSELNREAVAQARLVANPGCYPTCVSLP
                     LVPLLRQCRLKPGMPLIADCKSGVSGAGRKGNVGSLLCEVGDNFKAYGIAGHRHLPEI
                     RQTIAGLQDGIAEGFVFTPHLAPMIRGMHATVYLHLSDGICPETILRDYYRDSLFVDI
                     LPAGSTPETRSVRGANLCRISIQQAAQSDVWVVLSVIDNLVKGAAGQAVQNMNIMFGL
                     KETHGLGAIPLLP"
     gene            complement(1218..>1556)
                     /locus_tag="ACFOCA_001981"
     CDS             complement(1218..>1556)
                     /locus_tag="ACFOCA_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988622.1"
                     /translation="FQTTFCYNRASSPRSVWNLMKTLVLLLLSFSTTTAFAAYGLGLG
                     QAPKYPAGFRAYGYVYSGRQGWVLKTEADAIKLDTLFKRFVYRPSAANQNPVGQRSDG
                     IPANHTKEKP"
BASE COUNT          312 a          409 c          515 g          320 t
ORIGIN      
        1 cggaaatcgc tgaagccgga taaactagat tcccgctttt gcgggaatga cgggatttta
       61 ggtttttgtt ttcgtgggaa tggatgggcc caaagccgtc cgaaccaaaa aaaaccgccg
      121 ctttcagacg gcatcaaaaa accgcaggca cgatgcctgc ggtttgccgt ttgcgcttca
      181 ggggagcagg gggattgcgc ccaagccgtg tgtttctttc agtccgaaca tgatgttcat
      241 attttgcacc gcctgacccg ccgcgccttt gacgaggttg tcgatgacgg aaaggacgac
      301 ccacacatcg gattgcgccg cctgttggat gctgatgcgg cagaggtttg cgccgcgcac
      361 gctgcgggtt tctggtgtcg aaccggcggg caggatgtcc acgaacaggc tgtcgcggta
      421 atagtcgcgc aggatggttt cggggcagat gccgtctgaa aggtggaggt aaacggtggc
      481 gtgcataccg cgtatcatcg gcgcgaggtg cggcgtgaac acgaatcctt cggcgatgcc
      541 gtcctgaagc ccggcgatgg tctgcctgat ttcgggcagg tggcggtgtc cggctatgcc
      601 gtaggctttg aagttgtcgc cgacttcgca caacagcgaa ccgacattgc ctttcctgcc
      661 cgcgccggac acgccggatt tgcagtcggc aatcagcggc ataccgggct tcagacggca
      721 ttgccgcaac agcggcacga gcggcaggga tacgcaggtc gggtagcagc cggggttggc
      781 gacgaggcgc gcctgtgcga cggcttcgcg gttgagttcg ctcaatccgt acacggcttg
      841 ggaaacgagg ccgggggcgg cgtggggcat gccgtaccag tgttcccagg tcggaatgtc
      901 ccatatgcgg aagtcggcgg aaaggtcgat gacgcgcacg ccctgttcaa tcaggcgcgg
      961 cgcgtctttc atggcgatgc cgttgggcgt ggcgaagaag acgatgtcgc attgttccaa
     1021 acctgcctcg tcgggcgttt ggaaggcgag gccgtacacg ccgcgcaaac tcggaaagta
     1081 atcggcaact gcggttcccg cttcgctgcg gctggttacg gcggcgactt cgacatcggg
     1141 atgggcggca agcaggcgca gcagttccac gccggtgtag cccgtcgcgc cgacaatgcc
     1201 gactttgatt tttttactca tggtttttcc tttgtgtggt tggcgggtat gccgtccgaa
     1261 cgctgtccga cggggttttg attggcggcg gaaggacggt acacaaagcg tttgaaaagc
     1321 gtgtctaatt taatggcatc cgcctctgtt tttaaaaccc agccctgccg tccggaataa
     1381 acataaccgt aggcgcgaaa gccggcagga tatttcggtg cctgccccaa acccaaaccg
     1441 tatgcggcga aagcggtggt cgtggagaag gaaagcagga ggaggacgag ggttttcata
     1501 aggttccaaa ccgaacgggg cgatgaagcc cgattatagc aaaaggtcgt ctgaaa
//
LOCUS       DAXIFS010000259         1541 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.259, whole genome shotgun sequence.
ACCESSION   DAXIFS010000259 DAXIFS010000000
VERSION     DAXIFS010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.259"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..557)
                     /gene="galE"
                     /locus_tag="ACFOCA_001982"
     CDS             complement(<1..557)
                     /gene="galE"
                     /locus_tag="ACFOCA_001982"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFC6988623.1"
                     /translation="MNILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRL
                     KTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPIKYYDNNVS
                     GSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERIL
                     TDIQKADPRWSMILLRYFNPIGAHE"
     gene            complement(640..1503)
                     /gene="galU"
                     /locus_tag="ACFOCA_001983"
     CDS             complement(640..1503)
                     /gene="galU"
                     /locus_tag="ACFOCA_001983"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6988624.1"
                     /translation="MQKIRKAVFPVAGMGARFLPATKASAKEMLPIVDKPLIQYAAEE
                     AVAAGCTELIFITGRNKRNIEDHFDKAYELETELEMREKHKLLGYVQKILPDHVSCIF
                     IRQAEALGLGHAVLCARPAVGNEPFAVILADDLIDAPQGALKQMVDIYNQSGNSILGV
                     ETVDPSQTGSYGIVEVEQLKSYQRVTNIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     NLPRGAGGEIQLTDGIARLLDHEFVLAHAFEGKRYDCGSKLGYLEATVAYGLKHPELK
                     DDFKELLKQFV"
BASE COUNT          427 a          388 c          317 g          409 t
ORIGIN      
        1 ctttcatgcg cgccaatcgg attgaaataa cgcaacaaaa tcatgctcca gcgcggatcg
       61 gctttttgaa tgtcagtgag aatgcgctca accatcgatt tcgatgcgcc gtaagggctg
      121 gtggtgtcgc ccggtggcat atcctcggta taaggcactt tgcccggatc gccataaacc
      181 gtcgccgaag aactgaacac aatgctaaac acgcccgcac gcgccatttc ttccgccaac
      241 accaagctgc cggaaacatt attatcataa tattttatcg gctcggccac actttcaccc
      301 accgctttca agccggcaaa atgaatcacc gaatcaatgc ggttttccgc aaaaatacgg
      361 cgcaaaatct cacgatcgcg gatatcgcct tgataaaacg gaatctcttg gccggtaatc
      421 gttttcaagc gtggcaggat attgatgctg gaattgcata ggttatccaa aatcacgact
      481 tgatgaccgc ttttcagcaa agaaacaacg gtgtgcgagc cgataaaacc ggtgccgccg
      541 gtaacgagaa tgttcatcac gttttccttc tttatgttta aaaggccgcc tgaaagtgta
      601 aaaaacatga tgccttttct ttttcagacg gccttaaaat tatacaaatt gcttcaataa
      661 ttctttgaaa tcatctttta attcgggatg cttcaagcca taagctaccg tggcttccag
      721 atagcccaac ttactgccac aatcataacg cttaccttca aacgcatgcg ccaagacaaa
      781 ttcatggtca agtaggcggg caataccatc agttagctgg atttcaccac ctgcaccacg
      841 aggtagatta gtcagcaaat caaaaatacg cggtgtcaaa atataacggc cgactaccgc
      901 taaatttgac ggcgcatctt caggctttgg tttttccaca atattggtta cacgctgata
      961 gcttttcagc tgttccactt cgacaatgcc gtatgaaccg gtttgcgaag gatcgactgt
     1021 ttctacccct aaaatgctgt tgccgctttg attgtaaata tctaccatct gcttgagtgc
     1081 gccttgtggt gcatcaatca agtcatcggc caaaatcacg gcaaaaggct cattaccgac
     1141 agcaggacgg gcgcataata ccgcatgacc caagcccaaa gcttctgcct gacgaatgaa
     1201 aatacagctg acatgatcag gcagaatttt ttgcacatag ccaagcaatt tatgcttttc
     1261 acgcatttcc agttcagttt ccaactcata ggctttatcg aagtggtctt caatattacg
     1321 cttattacgg ccggtgataa aaatcaattc agtacaaccc gcggcaacgg cttcttccgc
     1381 agcatattga attaacggtt tgtccacgat tggcagcatt tctttagcgc tggctttcgt
     1441 ggcaggtaag aatcgggctc ccatgccagc tacagggaat acagctttac gaattttttg
     1501 cattttttat gtcactcctt tgaaataaat aaggcaaccc a
//
LOCUS       DAXIFS010000260         1523 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.260, whole genome shotgun sequence.
ACCESSION   DAXIFS010000260 DAXIFS010000000
VERSION     DAXIFS010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.260"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(159..596)
                     /gene="rnhA"
                     /locus_tag="ACFOCA_001984"
     CDS             complement(159..596)
                     /gene="rnhA"
                     /locus_tag="ACFOCA_001984"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFC6988625.1"
                     /translation="MDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTN
                     NRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDD
                     LWKELDTLVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS"
     gene            709..1098
                     /locus_tag="ACFOCA_001985"
                     /pseudo
     CDS             709..1098
                     /locus_tag="ACFOCA_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1248..>1523)
                     /locus_tag="ACFOCA_001986"
     CDS             complement(1248..>1523)
                     /locus_tag="ACFOCA_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988626.1"
                     /translation="RQHLEERQLLDGIMRKACRNRPLSEAQTKRNRYLSKTRYVVEQS
                     FGTLHRKFRYARSTYFGLIKVSAQSHLKAMCLNLLKAANRLSAPAAA"
BASE COUNT          292 a          378 c          452 g          401 t
ORIGIN      
        1 tgcgcgggaa tgacggtgga gcggtttcag ttgtttctaa ataaattttt gcagcgttgg
       61 gtttttagat tcccgcctgc gcgggaatga cggtggagga cgatgccgtc tgaatcccat
      121 tagcggtttc agacggcatt ttcttgtcgg tgcgacagtc aggaaaactg cgctgcgcca
      181 cggtttgcca aatcgtcggc gcgttcgttt tccgcgtgtc ccgcgtgtcc tttaacccaa
      241 gtccaactga cttggtgctg cccgaccaga gtgtcgagtt ctttccataa atcgtcgttt
      301 ttgacgggct gtttggcggc ggttttccag ccgttgcgct tccaaccgtg tatccagttt
      361 tccatgccgt ttttgacgta ttgcgagtcg gtgcagatga tgacggtgca gcggcgtttg
      421 agcgatttca gtccttcgat gacggcggtc agctccatgc ggttgttggt ggtttgcgct
      481 tcgccgccga aaagttcttt ttcgtggctg ccgtagcgca tcaacacgcc ccagccgccc
      541 gcgccgggat tgcctttgca cgcgccgtcg gtgtaaaggt aaacgggtgt gtccatattg
      601 tgcctttgtg tggtgtccgg cgtgattata agcggtttgc gcgccgtgcc gtctgaaaga
      661 ttgcggcgga ttgaaatagg catataatgt gcaactttat ttttgaatat gaaagagcgg
      721 atagtgggtc aaagcggcga gttgttttgt ttcgggcaaa tgcccgtatg gaaggcggaa
      781 aacctgccgg aagttttgtt gtcgggctat tcgtccgagg aaggggaatg ggtctgcctg
      841 aatgtgttgc agggcgatgt cgaagtccgc acgcaggacg gggcggcgga ggtttggtcg
      901 gcagaaagcg gcgattgcgt gtttgcgccg cagcaggtgt tttcggtcaa actgaaaacg
      961 gacgatgccg aaatccgttt gtcgctgtat tgcgcggcgg cagactattt tcacaaaaaa
     1021 tacgggatga gtgccacgca ttctgcggtc gcggcggcac gggataccgt accggcgggc
     1081 agggcgttgg atatgggttg agacctttgc aaaattcctt tccctcccga cagccgaaac
     1141 ccaaacacag gttttcagct gttttcgccc caaataccgc ctaattttac ccaaataccc
     1201 ccttaatcct gcccagatac ccgataatca ggcatccgtg ctgcctttta ggcggcagcg
     1261 ggcgcactta gcctgttggc ggctttcaac aggttcaaac acatcgcctt caggtggctt
     1321 tgcgcactca ctttaatcag tccgaaatag gttgaccgcg catagcggaa tttacggtgc
     1381 agcgtaccga agctttgttc gaccacataa cgggtcttcg acaaatatcg gttgcgtttg
     1441 gtttgcgctt ccgacagcgg acggttgcgg caggctttgc gcataatgcc gtctaacaac
     1501 tgacgctctt ccagatgttg ccg
//
LOCUS       DAXIFS010000261         1501 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.261, whole genome shotgun sequence.
ACCESSION   DAXIFS010000261 DAXIFS010000000
VERSION     DAXIFS010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.261"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            41..373
                     /locus_tag="ACFOCA_001987"
     CDS             41..373
                     /locus_tag="ACFOCA_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988627.1"
                     /translation="MQILSFQPDIAERMLEGTEGESVNENAQFVRTDNGYWIAWHEGV
                     AALLAPDTPPGIPCFWVEGAESLEELCAMVERGEFDEVEEFDGDDDEWLETAQGCGHH
                     GDACACGH"
     gene            705..1214
                     /locus_tag="ACFOCA_001988"
     CDS             705..1214
                     /locus_tag="ACFOCA_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003662333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HFC6988628.1"
                     /translation="MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGAKQYGKTNSTL
                     LAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYI
                     LPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQ
                     EEQAMATLF"
BASE COUNT          400 a          308 c          350 g          443 t
ORIGIN      
        1 accttgtttt gacggaaaac catcatataa aggaacactt atgcagattt tatcttttca
       61 accggacatt gcggaacgta tgctggaagg tacggaaggc gagtcggtca acgaaaacgc
      121 acaattcgtc cgtacggaca acggctattg gattgcgtgg catgaaggcg tagcggcact
      181 gcttgcgccc gatacgccgc cgggcattcc ctgtttttgg gtggaaggcg cggaaagcct
      241 tgaagagttg tgcgccatgg tggaacgcgg cgagtttgac gaagtggaag agtttgacgg
      301 cgatgacgac gaatggctcg aaacggcaca gggttgcggg caccacggcg acgcttgcgc
      361 ctgcggacat taaaggcatt gcaggcttgc cgcaaggggg gcaaggcttt gccgtttttt
      421 aaataatcgg tggattgcat ctgtttgcaa tgggctgaac gcttcccttt gtattttatt
      481 gaataaaaaa acttatcttg gtattataat taaggcagca tcaattattt tgggatggca
      541 ataaacgcaa agcattgatt tgcgccgatt gcagacttat tatagcaggt tgcggcgcgg
      601 acttaatggg aattgtttat agagcatgat ggtctgaaac atcattaatt aaaaatacca
      661 ttaatccgat ttatatttat ttcaatttca atggaaaaac atcaatgaca atgattttaa
      721 gcattttaag cctgtttttt atcatcagac tgttattttt agccgtctct attaaacatg
      781 aaaaagcctt gattgccaaa ggggcaaaac aatacggaaa aaccaattcc acgctgcttg
      841 cggcagttca tacgctttat tatttggcgt gttttgtttg ggtatggctt tctgacactg
      901 cttttaatgg catatccttg attggtacgc tgacggtgat ggcttcgttt gtgatattgt
      961 cattgattat taagcagttg ggggagattt ggacggttaa aatctatatt ttaccaaatc
     1021 atcaaattaa tcgttcgtgg ttgtttaaaa cattccgcca ccccaattat tttttaaaca
     1081 tcatacccga actgattggc atcgccttat tatgtcaagc gtggtatgtt ttattgattg
     1141 gcctgcccat ttatttgctg gtcttattta agcgtatccg acaagaagaa caggcgatgg
     1201 caacactttt ttaacccgtt tcatcaatta tagcggatta acaaaaacca gtacggcgtt
     1261 gcctcgcctt gccgtactgg tttttgttaa tccgctatat tccgccatct ctaagattta
     1321 cagcaataca cgggtgattt aaggaatgcc cgaaccgtca ttcccgccac ttttcgtcat
     1381 tcccgcgaaa gcgggaatct aggacgcagg gttaagaaaa cctacatccc gtcattcccg
     1441 ccacttttcg tcattcccgc gaaagcggga atctaggacg cagggttaag aaaacctaca
     1501 t
//
LOCUS       DAXIFS010000262         1462 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.262, whole genome shotgun sequence.
ACCESSION   DAXIFS010000262 DAXIFS010000000
VERSION     DAXIFS010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.262"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            111..1268
                     /locus_tag="ACFOCA_001989"
     CDS             111..1268
                     /locus_tag="ACFOCA_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HFC6988629.1"
                     /translation="MRKKLTALVLSALPLAAVADVSLYGEIKAGVEGRNIQLQLTEPL
                     QNIQPQVTKRKSRIRTKISDFGSFIGFKGSEDLGEGLKAVWQLEQDVSVAGGGATQWG
                     NRESFIGLAGEFGTLRAGRVANQFDDASQAIDPWDSNNDVASQLGIFKRHDDMPVSVR
                     YDSPEFSGFSGSVQFVPAQNSKSAYTPAHFVQQTTKSQPTLVPAVVGKPGSDVYYAGL
                     NYKNGGFAGNYAFKYAKHANVGRDAFELFLLGSGSDEAKGTDPLKNHQVHRLTGGYEE
                     GGLNLALAAQLDLSENGDKTKNSTTEIAATASYRFGNAVPRISYAHGFDFIERGKKGE
                     NTSYDQIIAGVDYDFSKRTSAIVSGAWLKRNTGIGNYTQINAASVGLRHKF"
BASE COUNT          363 a          360 c          379 g          360 t
ORIGIN      
        1 atatttgttc tgaaaaatgg ttttttgcgg agggggggta taattgaaga cgtatcgggt
       61 gtttgcccga tgtttttagg tttttatcaa atttacaaaa ggaagccgat atgcgaaaaa
      121 aacttaccgc cctcgtattg tccgcactgc cgcttgcggc cgttgccgat gtcagcctgt
      181 acggcgaaat caaagccggc gtggaaggca ggaacatcca gctgcagttg accgaaccgc
      241 tccaaaatat tcaacctcag gttactaagc gcaaaagccg catcaggacg aaaatcagcg
      301 atttcggctc gtttatcggc tttaagggga gcgaggattt gggcgaaggg ctgaaggctg
      361 tttggcagct tgagcaagac gtatccgttg ccggcggcgg cgcgacccag tggggcaaca
      421 gggaatcctt tatcggcttg gcaggcgaat tcggcacgct gcgcgccggt cgcgttgcga
      481 atcagtttga cgatgccagc caagccattg atccttggga cagcaataat gatgtggctt
      541 cgcaattggg tattttcaaa cgccacgacg atatgccggt ttccgtacgc tacgattctc
      601 cggaattttc cggtttcagc ggcagcgtcc aattcgttcc ggcccaaaac agcaaatccg
      661 cctatacacc ggctcatttt gttcagcaga ctactaaaag tcagcctact ctcgttccgg
      721 ctgttgtcgg caagccgggg tcggatgtgt attatgccgg tctgaattac aaaaatggcg
      781 gttttgccgg gaactatgcc tttaaatacg cgaaacacgc caatgtgggc cgtgatgctt
      841 ttgagttgtt cttgctcggc agcgggagtg atgaagccaa aggtaccgat cccttgaaaa
      901 accatcaggt acaccgcctg acgggcggct atgaggaagg cggcttgaat ctcgccttgg
      961 cggctcagtt ggatttgtct gaaaatggcg acaaaaccaa aaacagtacg accgaaattg
     1021 ccgccactgc ttcctaccgc ttcggtaatg cagttccacg catcagctat gcccatggtt
     1081 tcgactttat cgaacgcggt aaaaaaggcg aaaataccag ctacgatcaa atcatcgccg
     1141 gcgttgatta tgatttttcc aaacgcactt ccgccatcgt gtctggcgct tggctgaaac
     1201 gcaataccgg catcggcaac tacactcaaa ttaatgccgc ctccgtcggt ttgcgccaca
     1261 aattctaaat agcggggcgg tgaagcggat agctttgttt ttgacggctt gccttcattc
     1321 tttgattgca atctgactgc caatctgctt cagccccaaa caaaaatccg gatacggaag
     1381 aaaaacggca ataaagacag caaataccgt ctgaaagatt ttcagacggt atttcgcatt
     1441 ttcggcttgg tttgcacata ta
//
LOCUS       DAXIFS010000263         1432 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.263, whole genome shotgun sequence.
ACCESSION   DAXIFS010000263 DAXIFS010000000
VERSION     DAXIFS010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.263"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1276
                     /gene="pilC"
                     /locus_tag="ACFOCA_001990"
     CDS             <1..1276
                     /gene="pilC"
                     /locus_tag="ACFOCA_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6988630.1"
                     /translation="GFGGRGAYALDLTKADGNDPTKASLFDVKDNGNNGNNGNNSVQL
                     GYTVGTPQIGKTHNGKYAAFLASGYATKTIDDQQNKTALYVYDLESSGTLIKKIDVPG
                     GKGGLSSPTLVDKDLDGTVDIAYAGDRGGKMYRFDLSSQSPDQWTVRPIFEGTKPITS
                     APAVSKLKDKRVVIFGTGSDLSEEDVDKMDEQYIYGIFDDDTAATGTVNFTGTGGGLL
                     EQHLTEENKTLFLTDYKRSDGSGSKGWVVKLKDGQRVTVKPTVVLRTAFVTIRKYNDG
                     GCGAQTAILGINTADGGKLTKKSARPIVPADNTAVAQYSGHKKGINGKSIPIGCMQKG
                     NEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPDGKRSGKNNRCFSQK
                     GVRTLLMNDLDSLDITGPMCGMKRISWREVFY"
BASE COUNT          395 a          353 c          384 g          300 t
ORIGIN      
        1 gggctttggc ggcagaggtg cgtatgcctt ggatttgacc aaagccgacg gcaatgaccc
       61 gacaaaagcc tctttgtttg atgtaaaaga taacggcaat aatggcaata acggcaataa
      121 tagcgtgcaa ttaggctaca ccgtcggcac gccgcaaatc ggcaaaaccc acaacggcaa
      181 atacgccgct ttcctcgcct ccggttatgc gactaaaacc attgacgacc aacaaaataa
      241 aaccgcgctg tatgtgtatg atttggaaag cagcggtacg ctgattaaaa aaatcgatgt
      301 acccggcggc aagggcgggc tttcgtcccc cacgctggtg gataaagatt tggacggcac
      361 ggtcgatatc gcctatgccg gcgatcgcgg cgggaaaatg taccgctttg atttgagcag
      421 tcaaagtcct gatcaatgga ctgtacgccc tatttttgaa ggcacaaaac cgattacttc
      481 cgcgcccgcc gtttccaaac tgaaagacaa acgcgtggtt atcttcggta cgggcagtga
      541 tttgagtgag gaggatgtgg acaaaatgga cgaacaatat atttacggta tcttcgacga
      601 cgatacagcg gcgacgggta ctgtaaactt caccggtacg ggaggcgggc tgctcgagca
      661 acaccttact gaggaaaata aaaccttatt cctgaccgat tataagcgat ccgacggctc
      721 gggcagcaaa gggtgggtag tgaaattgaa ggacggacag cgcgttaccg tcaaaccgac
      781 cgtggtattg cgtaccgcct ttgtaaccat ccgcaaatat aacgacggcg gctgcggcgc
      841 gcaaaccgcc attttgggca tcaataccgc cgacggcggc aagctgacca agaaaagcgc
      901 gcgcccgatt gtgccggccg acaatacggc tgtcgcgcaa tattccggtc ataagaaagg
      961 catcaacggc aaatccatcc ctataggttg tatgcaaaaa ggcaatgaaa tcgtctgccc
     1021 gaacggatat gtttacgaca aaccggttaa tgtgcgttat ctggatgaaa agaaaacaga
     1081 cggattttca acaacggcag acggcgatgc gggcggcagc ggtatagacc ccgacggcaa
     1141 gcgttccggc aaaaacaacc gctgcttctc ccaaaaaggg gtgcgcaccc tgctgatgaa
     1201 cgatttggac agcttggaca ttaccggccc gatgtgcggt atgaaacgaa tcagctggcg
     1261 tgaagtcttc tactgatttg cacgcgaaaa tgccgtccga aaggttttcg gacggcattt
     1321 tttgcgtttt tcgggagggg cgggttcgta aaaggcgggc tatagggtag gcttcatctc
     1381 gccaatctca ctgaatccat caatttccac aattcaatta aataccgtca aa
//
LOCUS       DAXIFS010000264         1409 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.264, whole genome shotgun sequence.
ACCESSION   DAXIFS010000264 DAXIFS010000000
VERSION     DAXIFS010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.264"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(73..996)
                     /gene="lpxC"
                     /locus_tag="ACFOCA_001991"
     CDS             complement(73..996)
                     /gene="lpxC"
                     /locus_tag="ACFOCA_001991"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFC6988631.1"
                     /translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
                     GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
                     PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
                     EFDHPAFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
                     IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
                     LADETAYDRVEFADSDDLPDAFHELNIRNCG"
BASE COUNT          377 a          337 c          348 g          347 t
ORIGIN      
        1 ttttggtttt ctgtttttgt aggaatgatg aaaatttaag ttttaggaat ttaccggaaa
       61 aaacagaaag cgttatccac aatttctgat gttcagctcg tgaaatgcgt cgggcaaatc
      121 atcgctgtcg gcaaattcca cccggtcgta agccgtttcg tctgccaaaa ccgcgcgcaa
      181 gagtgcgttg ttgatggcgt gtcccgattt gtagccttca aacgcgccga caatcggatg
      241 tccgacgata tacaaatcac cgatggcatc aaggattttg tggcgcacaa actcatcggg
      301 atagcgcaag ccttcaggat tcaggacatc cgtgtcgtca atcacgatgg cgttgttcaa
      361 attgccgccc aaacccagat tgtgggcgcg catcatttcc acttcgtgca taaagccgaa
      421 ggtgcgcgcg cgcgcgattt cgtcgatgta ggatttgccg gcgaaatcga tttcaaaagt
      481 gggcgagctg cggttgaaag ccggatggtc gaattcgatg gtcagcgtta ccttaaagcc
      541 gtcatacggc gtaaagcgca cccatttgcc cgcttctttg atttcgacag gcttgaggat
      601 tttcaaaaaa cgcttttgcg ccttttgatc gaccacgccc gcatcttgca aaaggtaaat
      661 aaacggcagg ctggagccgt ccataatcgg gatttcgggt gcgttcagct caatcagcgc
      721 gttgtcgata ccgtaggcgg acagcgcgga cataatgtgt tcgatcgtgc cgacgcgcac
      781 gcctttgtcg gtaacgatgg tggaggaaag gcgggtatcg ttgatcaaat aaggggtcag
      841 cttgatttgt tcgcccatct cgccgtccaa atcggtacgg cggaaggaaa tcccgctgtt
      901 ttcaggcgcg gggtgcaggg tcagtgcgac ccgttcgccg gaatgcaggc cgactccggt
      961 aacgctgatg gatttcgcca aagttctttg cagcataaac cgcttcctta tcaatggggt
     1021 aagttgggga atgatacgat aaaaccggaa aaacaagcta tgtttttcca tagtatttgc
     1081 caatgtatcc gttttcaata cgtaagctgc ataaaaatgt atagtggatt aacaaaaatc
     1141 aagacaaggc gacgaacccg cctccctcct gaaaaacgca aaaaatgccg tccgaaaacc
     1201 tttcggacgg cattttcgcg tgaaccgtca ttcccacaag gacataaaac caaaacagaa
     1261 aaccaaaaac agaaacctaa aattcgtcat tcccacgaaa gtgggaatct agttcgttga
     1321 gtttcagtta tttagaataa attttgaaac ttaaatcccg tcattcccac gaacctacat
     1381 tccgtcattc ccacgaaagt ggggatcca
//
LOCUS       DAXIFS010000265         1391 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.265, whole genome shotgun sequence.
ACCESSION   DAXIFS010000265 DAXIFS010000000
VERSION     DAXIFS010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1391
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.265"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(232..597)
                     /locus_tag="ACFOCA_001992"
     CDS             complement(232..597)
                     /locus_tag="ACFOCA_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988632.1"
                     /translation="MEKPLLTPPFFLFEDVSLDIFQGLSELEKKIEPQDLMDDVYRAF
                     DSVGNILNFRIVEKEQKGFWVSTKIKTVVFDSADMSSDDLFLKCLQSSYKAYFETEPA
                     GLDKRQLMKTLIQKCGFSC"
     gene            complement(579..1124)
                     /locus_tag="ACFOCA_001993"
     CDS             complement(579..1124)
                     /locus_tag="ACFOCA_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988633.1"
                     /translation="MKKQITAAMMILTMIAPAMANSMDNQIFENQVFHTRADAPMQLA
                     ELSQKEMKETERAFLPLAILGGAAIGMWTQHGFSYATTGRPASVRDVAIAGGLGAIPG
                     GVGAAGKVVSFAKYGREIKIGNNMRIAPFGNRTGHPIGKFPHYHRRVTDNTGKTLPGQ
                     GIGRHRPWESKSTDRSWKNRF"
BASE COUNT          423 a          308 c          229 g          431 t
ORIGIN      
        1 ttctgtaaga caagattcag tttcattctt ccttattgta taaatatttc cttcacaaaa
       61 tctgaaataa atccataaat ccatcttatc cataattaaa gaaaaagttt cacctcgaga
      121 ttttgtcaac aattcgcaag gttgcgatgt tgcaatcaaa tagccgaaag acatttttta
      181 cctcatacat ggtcgaaatc agtttctgtt agttcagaat ccattttttc gtcaacaact
      241 gaatccgcat ttttgaatta acgttttcat cagctgccgt ttatctaaac cggcaggttc
      301 agtttcaaaa taagccttat atgaagactg taagcatttc agaaaaagat catcagaaga
      361 catatctgcc gaatcaaata caactgtttt gattttggta cttacccaaa accctttttg
      421 ctctttttct actatacgga aattcagaat atttccaacc gaatcaaaag cacggtaaac
      481 atcatccatc aaatcctgcg gctctatttt cttttccaat tccgacaatc cttgaaatat
      541 atccaaagac acatcttcaa atagaaaaaa aggaggagtt agaagcggtt tttccatgat
      601 ctgtccgtag attttgattc ccaagggcga tgacgaccaa ttccctgtcc aggcaaagtc
      661 ttgcccgtat tatccgtaac tcgacgatga taatggggaa attttccaat aggatgacct
      721 gttctattac cgaaaggggc tatccgcata ttattgccga ttttaatctc acgtccatat
      781 ttagcaaagg aaacaacctt tcctgcggca cctacaccac caggaattgc gcctaatccg
      841 ccagcaatag caacatctct aacagaagct ggtctgcctg tcgttgcata actaaaacca
      901 tgctgtgtcc acataccaat ggcagcacca cccaagatag ccaatggaag aaacgccctc
      961 tcagtctcct tcatctcctt ttgagaaagt tccgccaact gcatcggcgc atctgcccgc
     1021 gtatggaata cttggttttc aaatatctga ttgtccatgc tgtttgccat tgcgggggca
     1081 atcattgtca gaatcatcat cgctgcggta atttgttttt tcataataac tcctttggat
     1141 tacaaggttg gaaaatcaaa gccctgctta gaacgtatgt tgcacaccca atttcaatag
     1201 gtaaatcaga ttgcaaatcc agcaatttga atattgtcat tgttccgtgc aaaagggatt
     1261 tttattgatg agttgtgtac tgggtttcag cttggctttt tagataatct tttcacaaga
     1321 acatacatca atactgtccc aaaaaaaaga tttgataaat atattgcaag atattttgtt
     1381 ccatcttcat c
//
LOCUS       DAXIFS010000266         1300 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.266, whole genome shotgun sequence.
ACCESSION   DAXIFS010000266 DAXIFS010000000
VERSION     DAXIFS010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1300
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.266"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..339
                     /locus_tag="ACFOCA_001994"
     CDS             <1..339
                     /locus_tag="ACFOCA_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988634.1"
                     /translation="NCDEKDLYKFIGYLANHPNDVNLVFEKNSVQGAWGDEGRIQFFS
                     SKAQNIFVPLGFKFTAGVGNIAYRLNCNELFEMLSQLDFVSGGKQNLSTIKANIPSQF
                     HAEFDAGANM"
     gene            complement(403..>1300)
                     /locus_tag="ACFOCA_001995"
     CDS             complement(403..>1300)
                     /locus_tag="ACFOCA_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6988635.1"
                     /translation="IKMLSYCGVLSEEKFSRYYRYGVQNNKILQYIANRERNALNFIQ
                     AFSEKLLKDSGIYPKFADFFAQPNKNTFESMKTAFTDLVIQNTPKNTEVEVRRIFTKI
                     INPLAYKHNTFGTRKGSISNTPITLDELYYNRLNWRDKGKEKSLTRKEAQTLFADSAN
                     AANLNYLVNKATKFVKTLHKTSEVQRFDPTEANQAHHIFMASEFPDLASLPENLICLT
                     PNQHFNLAHPSNKTTVIDKHYQRICLMAKLDSIEQDNRANTGNYDYHEFIHVLNTGFN
                     TDQFDVSMSYETLKHRILMFDF"
BASE COUNT          387 a          198 c          250 g          465 t
ORIGIN      
        1 aattgtgatg aaaaggacct ttacaagttt atcggctatt tggcaaatca tcctaatgat
       61 gtaaatttag tctttgagaa aaatagtgtg caaggtgctt ggggtgatga gggacgtata
      121 cagtttttct caagtaaagc acaaaatatt tttgtgccac taggatttaa atttacggca
      181 ggcgtaggta atattgcata taggctaaat tgtaatgagc tttttgaaat gctatctcag
      241 ttagattttg tttctggtgg aaaacaaaat ctttcaacaa taaaagcaaa tattccgtct
      301 caatttcatg cagaatttga tgctggtgcg aatatgtaaa ttctaattta aaacacgaat
      361 ccgcttcatg agattcgtgt tttttatttt taaaatattt atttaaaaat caaacattaa
      421 aatacgatgc ttcaatgttt cgtaactcat agaaacatca aactgatctg tattaaatcc
      481 tgtattgagt acatgaataa attcatggta atcgtaattt cctgtattag cacggttatc
      541 ttgctcaata ctgtccaatt tcgccatcag gcaaatacgc tggtaatgtt tgtcaataac
      601 ggtggtttta ttgcttgggt gtgctaaatt gaaatgctgg tttggtgtca ggcaaatcag
      661 attttcaggc agcgatgcta aatcaggaaa ttcgcttgcc ataaaaatat gatgtgcctg
      721 attggcttct gtgggatcaa aacgttgaac ttcgctggtt ttgtgtagcg ttttgacaaa
      781 ttttgtggct ttattaacta aataattcaa atttgcggca tttgcactat cggcaaatag
      841 agtttgagct tctttgcgag tgagcgattt ttctttgcct ttatctcgcc agtttaggcg
      901 attgtaataa agctcgtcta atgtaatggg ggtattggaa atactccctt ttcttgtacc
      961 aaaagtatta tgtttataag ccaatggatt aatgattttg gtaaaaatac ggcgaacttc
     1021 tacttcggta tttttgggtg tgttttggat aacaagatcg gtaaacgccg ttttcatact
     1081 ttcaaacgta tttttattag gctgggcaaa aaaatcggca aattttggat aaataccact
     1141 gtcttttaat aatttttcac taaatgcttg gatgaaattt agggcatttc tttcacgatt
     1201 ggcaatatat tgcaggattt tattattctg tacgccgtac cgatagtatc tagaaaactt
     1261 ttcttcgctt aatacgccac aatagctcag cattttaatc
//
LOCUS       DAXIFS010000267         1290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.267, whole genome shotgun sequence.
ACCESSION   DAXIFS010000267 DAXIFS010000000
VERSION     DAXIFS010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.267"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            166..1278
                     /gene="nadA"
                     /locus_tag="ACFOCA_001996"
     CDS             166..1278
                     /gene="nadA"
                     /locus_tag="ACFOCA_001996"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HFC6988636.1"
                     /translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETAGRL
                     KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEADTLVVAG
                     VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
                     VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYICRETGADMLLWQGSCIVH
                     NEFKGQELAALKAEHPDAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
                     TDLGILHEMQKQAPDKEFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
                     LLDRKLGEAAKLPLQRMLDFAAGLKRGDVFNGMGPA"
BASE COUNT          299 a          333 c          387 g          271 t
ORIGIN      
        1 accaaagcgg tttgtcggaa cgaagcgggt cggttttacg gtatcgcaaa cctgttttca
       61 gacgaccttg cttattatac tcaatttgag cataatataa aaatatttca aaatataaac
      121 ggcaaatctt tatgccgtct gaaaaaccag ccataaggaa gtctcatgca aaccgccgcc
      181 cgccgctcgt tcgattacga tatgcccctc attcaaacgc cgacttccgc ctgccaaatc
      241 cgtcaggcgt gggcgaaggt tgccgacacg cccgaccgcg aaacggcagg ccgtctgaaa
      301 gacgaaatca aggctttgct gaaggagaaa aacgcggtct tggtggcgca ttattatgtt
      361 gatccgctga ttcaggattt ggctttggaa acgggcggat gcgtgggcga ttcgctggaa
      421 atggcgcgct ttggtgcgga acacgaagcc gatacattag tggtggcggg cgtgcgtttc
      481 atgggcgaga gcgcgaaaat cctctgccct gaaaaaacag tgctgatgcc tgatttggag
      541 gcggaatgtt ctttggattt gggttgcccg gaagaggcgt tttcggcgtt ttgcgaccaa
      601 caccccgacc gcacggtggt ggtgtacgcc aacacttccg ccgccgtgaa agcgcgtgcc
      661 gactgggtgg taacgtcttc agtggcgttg gaaatcgtgt cgtatctgaa atcgcgcggc
      721 gagaagctga tttggggacc cgaccgccac ctcggcgact acatctgccg cgaaacgggc
      781 gcggatatgc tgttgtggca gggttcgtgc atcgtccaca acgaatttaa agggcaggag
      841 ctggcggcgt tgaaagcgga acatcccgac gcggtggtgc tggttcatcc tgaatcgccg
      901 caaagcgtca tcgaactggg cgacgtggtc ggctcgacca gcaaactgct caaggccgcc
      961 gtatcgcgtc ctgaaaaaaa attcatcgtg gcgaccgatt tgggcatcct gcacgaaatg
     1021 caaaagcagg cgcccgacaa agaatttatc gccgcgccga cggcgggcaa cggtggaagc
     1081 tgtaaaagct gcgcgttctg cccgtggatg gcgatgaatt cgctgggcgg catcaaatac
     1141 gccctgacaa gcggacgtaa cgaaatcctg ttggacagga agctgggcga agccgccaaa
     1201 ctgcctttgc agcgtatgct cgacttcgcg gcaggactca aacgcgggga tgtgttcaac
     1261 ggcatgggtc ccgcctgatt tgccgtccat
//
LOCUS       DAXIFS010000268         1262 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.268, whole genome shotgun sequence.
ACCESSION   DAXIFS010000268 DAXIFS010000000
VERSION     DAXIFS010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.268"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..880
                     /locus_tag="ACFOCA_001997"
     CDS             <1..880
                     /locus_tag="ACFOCA_001997"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6988637.1"
                     /translation="KEAAPAQQQGGIRFSDGIAAVADNEVITRRRLAEAVSEAKANLP
                     KDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQR
                     RDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILI
                     KADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPA
                     FEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQAT
                     VNLLRDLHSGAYVDIR"
BASE COUNT          348 a          368 c          322 g          224 t
ORIGIN      
        1 aaaagaagcc gcacccgcac aacagcaggg cggtatccgc ttttcagacg gcattgccgc
       61 cgttgccgac aacgaagtca tcacgcgccg ccggcttgcc gaagccgttt ccgaagccaa
      121 agccaacctg cccaaagacg cgcagataag cgaatccgag ctgtcccgac aggtgctgat
      181 gcagcttgtc aaccaatccc tgattgtaca ggcgggcaaa cgccgcaaca ttcaagcaag
      241 cgaagcggaa atcgatgccg tcgtcgcaaa aaatcccgcc ctcaaaaacc tcagccccgc
      301 ccaacgccgc gattttgccg acaacatcat tgccgaaaaa gtccgccagc aggcagtgat
      361 gcagaacagc cgcgtgagcg aagctgaaat cgatgccttc ctcgagcagg cgcaaaaaca
      421 aggcatcacc ctgcccgaag gcgcaccgtt gcgccaatac cgcgcccaac acatcctgat
      481 taaagctgac agcgaaaacg ccgccgtcgg cgcggaaagc accatccgca aaatctacgg
      541 agaggcccgc agcggcacag acttttccag cctggcgcgc caatattcgc aagacgcgag
      601 cgcgggcaac ggcggagatt tgggctggtt tgccgacggc gtgatggttc ccgcctttga
      661 agaagccgtc cacgcgctca aacccggaca ggtcggcgcg cccgtccgca cccaattcgg
      721 ctggcatatc atcaaattga acgaagtgcg cgatgccggc acacctcagg aacgtatccg
      781 caattccgtg cggcaataca tcttccaaca aaaagccgaa caggcaaccg tcaacctgtt
      841 gcgtgacctg cattccggcg cgtatgtcga catccgctaa ggcggtttga agcaaaaagc
      901 cataccgatc ggcaaaaatc cgggcggtat ggctttttgg atttcgagtt acttttacac
      961 cgtcattcat cattcccgcg aaagcgggaa tctagaaacg aaaagtaaca ggaatttatc
     1021 gggaatggct ggaatttaaa ggtctggatt cccgctttcg cgggaatgac gggattttgg
     1081 gttgtggtaa tttatcggaa aaacaaaaaa acctatgccg tcattcccga gcaggcggga
     1141 atccggttat ttaaaactgc agaaatttat ccgaagcaac aacaatcttt ccatcgtcat
     1201 tcccgcgtag gcgggaatct agcaacgaaa agtaacagga atttatcggg aaaacagaaa
     1261 cc
//
LOCUS       DAXIFS010000269         1254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.269, whole genome shotgun sequence.
ACCESSION   DAXIFS010000269 DAXIFS010000000
VERSION     DAXIFS010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.269"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            237..1190
                     /locus_tag="ACFOCA_001998"
     CDS             237..1190
                     /locus_tag="ACFOCA_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6988638.1"
                     /translation="MGFLIGLSRNLTRFTALVILLASAVAFIGPASFAWVKGDVQVLV
                     LGIIMLGMGMTLGREDYRILAQRPLDVFIGAAAQYTVMPLLAIGIAKLFDLSPGLTLG
                     LVLVGTCPGGVSSNIMSFLAKGDVAFSVGMTTVSTVLAPAVTPLWMTCLVGQTVDMDG
                     WGMFRFMLLVTLLPVVLGSAANILLHGKHWFENVRAVMPGVAVLAFACIVGGVASVHG
                     HRFAESALVMVLAIAVHNIAGYVSGYYAAALFGMDTAKKRTLAIEVGVQNAGLATGLS
                     AKFFPGNPESAVAAAVACVWHSVSGTVLGNLFALWDKRRDA"
BASE COUNT          200 a          273 c          432 g          349 t
ORIGIN      
        1 caaaccggat gattcgggct aaataattcc tgattctttg gatatagcca acggtatgcc
       61 tgccgatgcc gtcagaaagg gcttgatggg cgtttgcggt tcgggttaat atttgtgctg
      121 tatctgttaa ttccggttag taaaatgggg cggggacgat gagtggccgt cggtcggttt
      181 tgcacgggcg gtaataatgt ccggcgcaag gtgcgccgtt tcgggagggg tgtgtgatgg
      241 gttttctgat tggtttgagc cgcaacctga cgcggtttac ggctttggtc attttgcttg
      301 cgtcggcggt tgcgtttatc ggaccggctt cgtttgcgtg ggttaagggc gatgttcagg
      361 tcttggtgct gggcatcatt atgctgggta tggggatgac tttgggcagg gaggactacc
      421 ggattttggc gcagcgtcct ttggatgtgt ttatcggtgc ggcggcgcaa tataccgtga
      481 tgccgttgct cgccatcggt attgccaagc tgttcgacct ttcgccgggg ctgactttgg
      541 ggctggtgtt ggtggggacg tgtccgggcg gcgtgtcgtc caacattatg agtttccttg
      601 ccaaaggcga tgtggcgttt tcagtcggta tgacgacggt gtctacggtg ctggctccgg
      661 ccgttacgcc tttgtggatg acctgcctgg tcggtcagac ggtggatatg gacggttggg
      721 ggatgttccg gtttatgctg ctggtcacgc ttttgccggt ggtgctgggt tcggcggcaa
      781 atatcctgct gcacggaaaa cattggtttg aaaatgtccg tgccgttatg ccgggcgtgg
      841 cggtattggc atttgcctgc attgtcggcg gcgtggcttc ggttcacgga caccgttttg
      901 ccgaatcggc gttggtaatg gtgttggcga ttgcggtaca caatatcgcc ggctatgtgt
      961 caggctatta cgccgccgcg ctgtttggta tggatacggc aaaaaaacgc accttggcaa
     1021 tcgaagtcgg cgtgcagaat gccggtttgg caacaggatt gagcgcgaaa tttttcccag
     1081 gcaaccccga atcggcggtt gcggcggcgg tcgcctgcgt gtggcattcg gtttcgggga
     1141 cggtattggg caacttgttc gctctgtggg acaagcgtcg ggacgcttag tcgggcgtgt
     1201 ccgaaccgtc ccacgatata tagtggatta actttaaacc ggtacggcgt tgcc
//
LOCUS       DAXIFS010000270         1227 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.270, whole genome shotgun sequence.
ACCESSION   DAXIFS010000270 DAXIFS010000000
VERSION     DAXIFS010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.270"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            94..339
                     /locus_tag="ACFOCA_001999"
     CDS             94..339
                     /locus_tag="ACFOCA_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6988639.1"
                     /translation="MKDSTGQMRLATKDLAEAIKRGEVRSSAFTTKQLKAIEKGESKI
                     PDYTWHHHQDTGRMQLINEDLHHDTGHIGWRAMSKGK"
     gene            342..731
                     /locus_tag="ACFOCA_002000"
     CDS             342..731
                     /locus_tag="ACFOCA_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988640.1"
                     /translation="MWKIIKEDSDDLGFAIKCLFSQSIDLNEFKLWIEQVIRDMPIED
                     IPFYIFDLADFDGGIADIDNIVGFVSSYSLSKSKKNALTGIAFLRGIDVYDPPISKEK
                     ALKALKKHPEIYQKFQHFFPFVELPPL"
     gene            841..1221
                     /locus_tag="ACFOCA_002001"
     CDS             841..1221
                     /locus_tag="ACFOCA_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988641.1"
                     /translation="MTKEQGQDLSFATYCLLSAAINLQEFKLWLEKVVLDMPIDNIPF
                     YIFDLIDLKEGVGDIYNILDFVPNSDLSKDQDDALTGIAFLRGIDVYDPPVSKEKALK
                     ALKKHPEIYQRFQHFFPFVELPPL"
BASE COUNT          415 a          188 c          249 g          375 t
ORIGIN      
        1 cgatgatttt tattagctaa tttaagtaat ttaagcaagt tttttagata ctgaaactgg
       61 taattatgtt tatgtaagca taaggagttc agattgaagg attctacagg gcaaatgagg
      121 ctggcaacca aggatttggc ggaagccatt aaacgaggag aagtacgtag ttctgctttt
      181 acaacaaagc aactaaaggc aatcgaaaaa ggagaatcta aaataccgga ttacacttgg
      241 catcatcatc aagacactgg aaggatgcaa ttgattaatg aagacttgca tcatgatacc
      301 ggccatatcg gttggagagc gatgagtaaa ggaaagtaac tatgtggaaa atcataaaag
      361 aggatagtga tgatttagga tttgcaatta aatgcttatt ctctcaatct attgatttaa
      421 atgaattcaa gttatggatt gaacaagtaa tacgcgatat gcccatcgag gacatccctt
      481 tttatatttt tgacttggcg gattttgatg ggggaattgc cgatattgac aatattgtag
      541 gttttgtttc gagttacagc ctatcaaaat cgaaaaaaaa tgccttgaca ggcattgcct
      601 tcttaagggg gatagatgtc tatgatccgc ctatttcaaa agaaaaagca ttaaaagcct
      661 taaagaaaca tcctgaaatt tatcagaagt ttcagcattt ctttccgttt gtagaactgc
      721 ccccgcttta aacagtcaaa atgccgtctg aaatgatatt cggctttcag acggcatttt
      781 tgacacaaag caggtaacca aaagagcgtt tgacggcaaa ggaagataat tatgtgaaaa
      841 attacgaaag agcaaggtca agatttaagt tttgcaacat attgcttatt atcggcagca
      901 attaatttgc aagaatttaa attatggttg gagaaggttg tcttagatat gcctattgat
      961 aatatacctt tttatatttt tgatttaatt gatcttaaag aaggagtagg agatatttat
     1021 aatattttgg attttgttcc gaattcagac ttatctaaag accaagatga cgcattaaca
     1081 ggcattgcct tcttaagggg gatagatgtc tatgaccctc ccgtttcaaa agaaaaagca
     1141 ttaaaagcct taaagaaaca tcctgaaatt tatcagaggt ttcagcattt ctttccgttt
     1201 gtagaactgc ccccgcttta aacagtc
//
LOCUS       DAXIFS010000271         1214 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.271, whole genome shotgun sequence.
ACCESSION   DAXIFS010000271 DAXIFS010000000
VERSION     DAXIFS010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.271"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            57..782
                     /locus_tag="ACFOCA_002002"
     CDS             57..782
                     /locus_tag="ACFOCA_002002"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFC6988642.1"
                     /translation="MPRFHLPENLSIGQTVNLPDNIVRHLNVLRVRPNENITLFDGKG
                     KAHAARLTVLEKRRAGAEILHEETADAESPLNITLIQSISSGERMDFTLQKSVELGVT
                     AIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKM
                     PSESTKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKR
                     ILRTETAPLAALAAMQTLWGDFA"
BASE COUNT          332 a          383 c          278 g          221 t
ORIGIN      
        1 gtccgtttcc atcacgccgc tgcgacagat tataaccgtc cgaaccgcca aaaactatgc
       61 cccgattcca cctgcccgaa aacctttcca tcggacaaac cgtcaacctg cccgacaaca
      121 tcgtccgcca cctcaacgtc ctgcgcgtcc gccccaacga aaacatcacc ctcttcgacg
      181 gcaaaggcaa ggcacacgcc gcacggctga ccgttttgga aaaacgccgc gccggggcgg
      241 aaatcctgca cgaagaaacc gccgatgccg agtccccgct gaacatcacg ctcatccaat
      301 ccatatcttc cggcgaacgt atggacttta ccctgcaaaa aagcgtcgaa ctcggcgtaa
      361 ccgccataca gcccgtcatc agcgaacgct gcatcgtccg cctcgacggg gaacgcgccg
      421 ccaaacgcct cgcacgctgg caggaaatcg tcatctccgc gtgcgaacaa agcggcagga
      481 acaccgttcc ccccgtactg cccatcatcg gctaccgtga agcactcgac aaaatgccgt
      541 ctgaaagcac caagctgatt atgagcatca accgcgcccg caaactcggc gacatccgcc
      601 acccgtctgg cgcaatcgtc tttatggttg ggcccgaagg cggctggaca gaacaggaag
      661 aacaacaggc atttgaagct ggctttcagg cggttacact cggcaaacgg attttacgca
      721 cagaaaccgc cccactcgcc gccctcgccg ccatgcagac gctttggggc gatttcgcat
      781 aaacagaaat gccgtctgaa acccgttcag acggcatttt gcagccgatt aagatagtag
      841 gttcaaataa gatttcccgt gtcgtcattc ccgcgaaagc gggaatctag aaacgaaaaa
      901 ctacagggat ttatccgaaa caacaaccct ctccgccgtc attcccgcaa aagcgggaat
      961 ctagaaacga aaaactacag ggatttatcc gaaacaacaa accctctccg ccatcattcc
     1021 cgcaaaagcg ggaatctaga aatttaatgt tgcggtgatt tatcggaaat gactgaaact
     1081 caacgaaccg gattcccact ttcgcgggaa tgacgaagtg gaagttaccc gaaacccaaa
     1141 acaagcgaaa ccgaacggac tggattcccg cctgcgcggg aatgacgaga ttttaggttt
     1201 ctatttttgg tttt
//
LOCUS       DAXIFS010000272         1198 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.272, whole genome shotgun sequence.
ACCESSION   DAXIFS010000272 DAXIFS010000000
VERSION     DAXIFS010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.272"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(458..1099)
                     /locus_tag="ACFOCA_002003"
     CDS             complement(458..1099)
                     /locus_tag="ACFOCA_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GrxB family glutaredoxin"
                     /protein_id="HFC6988643.1"
                     /translation="MKLYIYDHCPFCVRARMAAGLFGADVEEAVLANDDEATPIGMIG
                     AKQVPVLQKEDGSFMGESLDIVRHFDREDRLKDEVRPEIRAWLDKVGGYNDKLVQPRV
                     IKIGLPEFATPEAVKYFTDKKEKSIGSFSANLNKTAQYLERINADLQELENLMDGASD
                     GINGGIGMEDILVFPVLRNLTVVRGIEWPQKVMGYLMMMSEKSGVPLYFDRAL"
BASE COUNT          354 a          296 c          215 g          333 t
ORIGIN      
        1 aagaagaaat ggcagataaa ttacatacga tatagtggaa tataaaatat ttacggtcta
       61 aaccttgttc agttgcaatt tttttatact taccttgcgc aaaaaaatca aagaaatcca
      121 ttaaactatc tttcacatta gaaatttaaa agctaaataa tacaacaaac aatgtgaagt
      181 actattcatg gtttatttaa aaaataatac tattctgaac attatttaga tacagaaatt
      241 aacaaattag aactaaacaa gcttttaaat actttaattt tattggaaag ctataaaagg
      301 aactataact ttacacacta gtcacttctt tttaagaggc aaaagggatt gggaaggtcg
      361 tcttggagat aagcactggt atttcggcca atggtaaata gagtttacct caaatagggt
      421 agaacctcct tcatctgtca gttaataaca gccactttta caatgccctg tcaaaataaa
      481 gcggcacgcc cgatttttca ctcatcatca tcaaataacc catcaccttt tgaggccatt
      541 cgataccgcg caccacggtc agattcctca aaacggggaa aaccaaaata tcctccatgc
      601 cgattccgcc gttgatgccg tctgaagcac cgtccatcaa attctccaac tcttgcaaat
      661 ctgcgtttat gcgttcgaga tattgggcgg ttttattcaa attggcggaa aagctgccga
      721 tgcttttctc ttttttgtct gtaaaatatt ttaccgcttc cggcgttgca aattcgggca
      781 gcccgatttt gatcacgcgc ggctgcacca gtttgtcgtt gtatccgccc accttgtcca
      841 gccacgcccg tatctcgggg cggacttcgt ctttcagacg gtcttcgcgg tcgaaatgcc
      901 gcacaatgtc caaactctcg cccataaacg aaccgtcttc tttttgcagg acgggcactt
      961 gtttcgcacc gatcataccg atcggcgttg cctcgtcgtc gtttgccagc acggcttctt
     1021 caacgtccgc gccaaacagc ccggcagcca tccgcgcacg cacacaaaac gggcaatggt
     1081 cgtaaatata cagtttcatc aaaatattcc tcgtcaacct gtcggtaccg gctaccttaa
     1141 caccccgcgc cacccgaaac aagtttatct tcccgcctat gcaccgtaaa taaataag
//
LOCUS       DAXIFS010000273         1171 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.273, whole genome shotgun sequence.
ACCESSION   DAXIFS010000273 DAXIFS010000000
VERSION     DAXIFS010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.273"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..532
                     /locus_tag="ACFOCA_002004"
     CDS             <1..532
                     /locus_tag="ACFOCA_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HFC6988644.1"
                     /translation="DITFSEDVGECPLHSDSSFSENPESYLVMYVVKSANDGGNSLFL
                     SSSDIVNQLSKTETGKKHLKTLTGNLYPFKAPASFDKKQGVRWGNILSVNTQMIRFRS
                     DCIYKGIEENRNKVSKEMVLALDYLVKIIKNASDIQEFSAQDDGLIIIDNVNGLHAGT
                     DYTDKNRHYIRARITV"
     gene            542..>1171
                     /locus_tag="ACFOCA_002005"
     CDS             542..>1171
                     /locus_tag="ACFOCA_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HFC6988645.1"
                     /translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFNMPLSKVVAL
                     VALPSLLMSLLVLCSNNKKGFWQEIVYYLKTYKLLAIGSVVGSIFGVKLLLILPVSWL
                     LLLMAIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLI
                     FLLSETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLS"
BASE COUNT          383 a          169 c          230 g          389 t
ORIGIN      
        1 tgatataact ttctcggaag atgttggaga atgtccactt catagtgatt catcttttag
       61 tgaaaacccg gaaagttatt tggttatgta tgtagtaaaa tcagccaatg atggaggtaa
      121 ttccctattt ttaagttcat cagatattgt caatcagtta tctaaaacag aaaccggtaa
      181 aaaacactta aaaacattaa cgggcaattt atatccattt aaagcaccag catcatttga
      241 taaaaaacaa ggtgtgagat ggggtaatat cttatcggtc aatactcaaa tgattagatt
      301 tagaagtgat tgtatctata aaggtattga agaaaataga aataaagtat caaaggaaat
      361 ggtacttgca cttgattatc ttgtaaagat tataaaaaat gcgagtgata ttcaagaatt
      421 ttctgcacaa gatgatggtt tgattattat tgacaatgtc aatggcttgc atgccggaac
      481 tgattatacg gataaaaaca ggcattatat tagagcaaga attactgtat aaaggacggt
      541 tatgcaagaa ataatgcaat ctatcgtttt tgttgctgcc gcaatactgc acggaattac
      601 aggcatggga tttccgatgc tcggtacaac cgcattggct tttaacatgc cattgtctaa
      661 ggttgttgcc ttggtggcat taccaagcct gttaatgagc ttgttggttc tatgcagcaa
      721 taacaaaaaa ggtttttggc aagagattgt ttattattta aaaacctata aattgcttgc
      781 tatcggcagc gtcgttggca gcatttttgg ggtgaagttg cttttgatac ttccagtgtc
      841 ttggctgctt ttactgatgg caatcattac attgtattat tctgtcaatg gtattttaaa
      901 tgtatgtgca aaagcaaaaa atattcaagt agttgccaat aataagaata tggttctttt
      961 tgggtttttg gcaggcatca tcggcggttc aaccaatgcc atgtctccca tattgttaat
     1021 atttttgctt agcgaaacag aaaataaaaa tcgtatcgta aaatcaagca atctatgcta
     1081 tcttttggcg aaaattgttc aaatatatat gctaagagac cagtattggt tattaaataa
     1141 gagtgaatac ggtttaatat ttttactgtc c
//
LOCUS       DAXIFS010000274         1071 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.274, whole genome shotgun sequence.
ACCESSION   DAXIFS010000274 DAXIFS010000000
VERSION     DAXIFS010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.274"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(123..551)
                     /locus_tag="ACFOCA_002006"
     CDS             complement(123..551)
                     /locus_tag="ACFOCA_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HFC6988646.1"
                     /translation="MGFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGK
                     VDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDID
                     KESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF"
     gene            complement(532..966)
                     /locus_tag="ACFOCA_002007"
     CDS             complement(532..966)
                     /locus_tag="ACFOCA_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gp16 family protein"
                     /protein_id="HFC6988647.1"
                     /translation="MRRALIAKIKIAQKELGLDDGTYRAVLERVTDKRSCADMDVSEL
                     ESVVADMRSHGFKPKAKGNPHGKPHLRRTSSAAMLDKVEALLTVGGKHWNYAHAMARR
                     MFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS"
BASE COUNT          279 a          318 c          191 g          283 t
ORIGIN      
        1 atttgaaaac cccattaaac cgtctttaac ccatcgtccc gaacggtaga tgtttcaccc
       61 ctgcaaacca aaaaaaagac cgtctgaata cagacggcca aagcctggtc acacatcact
      121 gcctaaaata aagctgcctg ctgtgccgca ggtcggctca tttcattgat aatcgtatat
      181 cccgttcgtg aagagatgcc gtatttaggg catagcttcg tcatcgccat aagcccgctc
      241 tccttatcaa tatcgcgcaa tttgacaaac tcctgataaa acctatggtt tctcaactgt
      301 attaacgcct tgccgcaccg tgggacatac aattcctcgc caccatatac ctgcaacagc
      361 tcatgtgttt tcacttcgcc gatggcttcg accaaaattg ccaaacgctc ggtgtccacc
      421 ttgcccttac caaatttaaa ccgcgccccg ccaatcgcct tgaccagctg ttccgtcgct
      481 gccagtccga tgacatccac aatgtccaac acggtatccg gcaataaatg ttcaactttt
      541 tcgaacccca tcatccccac ccgctttttc cgttttcctg ttttccgcaa tctgcaacgc
      601 agcaaccagt ttatgtagct gcgtatcgtc taaatattcg accttatcct taccaaacat
      661 ccgccgcgcc attgcgtgtg catagttcca atgtttgccg ccgacggtca gcagggcttc
      721 gactttgtcc agcattgccg ctgatgatgt ccgacgcaga tgcggtttgc cgtgtgggtt
      781 accttttgct ttaggcttaa atccgtgcga ccgcatatca gcgacaacag actcaagttc
      841 agaaacatcc atatccgcac acgaccgctt atccgtcaca cgctccaaca ccgcgcgata
      901 ggtaccgtca tccaagccca gctccttttg agcaatctta attttcgcaa tcaacgcccg
      961 gcgcattatc tctctaatac aacatatagt ataaattagc gcattttata caataaaata
     1021 caatatatat tattaagccg atgttttttt gcgaaacgga cagacataaa a
//
LOCUS       DAXIFS010000275         1056 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.275, whole genome shotgun sequence.
ACCESSION   DAXIFS010000275 DAXIFS010000000
VERSION     DAXIFS010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.275"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..286
                     /locus_tag="ACFOCA_002008"
                     /pseudo
     CDS             1..286
                     /locus_tag="ACFOCA_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580802.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
     gene            974..1056
                     /locus_tag="ACFOCA_002009"
                     /pseudo
     CDS             974..1056
                     /locus_tag="ACFOCA_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
BASE COUNT          363 a          228 c          208 g          257 t
ORIGIN      
        1 ttattaccac tggtaaaaat gataatggaa atttaacggt aaatggaatt tacggcatcc
       61 aatcttttgc agacccgcaa ttaggatata cgcctgaatt atcggtgaaa agcaataatg
      121 atattctatt taaaaataat ctccaatcta ttgacgtgaa gccccattcc ggaaatatcc
      181 atttggatgc caaaggaaaa attcaattta atttgaagtt cccgatgttg atggggtaca
      241 agatgtagcc agtggaaaaa aataccgaca aacaatagtg ccttagtgcg gtatgtcaac
      301 actatcagcc ccccgatgaa aatgacaaag gcagcatatc ctttcattca aaaacaggca
      361 atttgttcaa tatgaacgtt aacgttcata aagacacaca ccatttcggt attcacaacc
      421 tcaacaatac cgatgttcat ctgactgccg aagacagcga taatgtgatt gagattaaag
      481 gggaactcgc cgaccctatg ccgacaggaa atgttgagag tacaagtttt ttaaggggca
      541 ttgaaacggc ttttaaatcc aataccgtat taacggggaa taacaataaa atatccatcg
      601 ccactgaggg caagggcttg ggattgggcg taaatggtct ccagtccaac tccccctatt
      661 ccggacacac gacgggcatt ttcatcaata atcaatcaag cgaccttacc caaccttccc
      721 ttgatggcat cagcaccatc aaactcaaag ccgtcaaggg aaataatgaa gttgatttaa
      781 atgtaaaaaa ccacgcctcc gtaaaaggca ttatcgcgtc gcattctgca aaagcaacgc
      841 ttgaagccga aggggacaat attgtccagg ttaaaaatcc ggacaccaat acggctttaa
      901 tcgatgcttt gaaaaaacaa taccccaatg cttcgaaaga actatacagg gtgggggttc
      961 aatccacgac tggaacagta cgcatttcgc caaacggcaa aatcgcatta acggaattga
     1021 aaacttttgg aattgtacaa aacggcattt gcgtca
//
LOCUS       DAXIFS010000276         1031 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.276, whole genome shotgun sequence.
ACCESSION   DAXIFS010000276 DAXIFS010000000
VERSION     DAXIFS010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.276"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(221..>1031)
                     /locus_tag="ACFOCA_002010"
     CDS             complement(221..>1031)
                     /locus_tag="ACFOCA_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase family 1"
                     /protein_id="HFC6988648.1"
                     /translation="IYEHLGININIEAFLKPRLEKFKREEKYFHDFFKRNNFKEVIFP
                     STYWNPGIICAAHKQGIKVSDIQYAAITPYHPAYFKSPKSHYVADKLFLWSEYWNHEL
                     LPNPTREIGSGAAYWYALDDVRFSEKLNYDYIFLSQSRISSRLLSFAIEFALKNPQLQ
                     LLFSKHPDENIDLKNRIIPDNLIISTESSIQGINESRVAVGVYSTSLFEALACGKQTF
                     VVKYPGYEIMSNEIDSGLFFAVETPEEMLEKTSPNWVAVADIENQFFGQEK"
BASE COUNT          354 a          165 c          161 g          351 t
ORIGIN      
        1 ctaatattgg agctgacgat tttacaatta ttacctatat atacagagtt attattcccg
       61 atcacagtta gttgcgtggc attggttaaa gatgtagtag atatgttaat agtattatta
      121 attccctgtt cagaatacat gtgagttcct atgattaaaa gaataaagtg caatatttaa
      181 aataagaaaa atattgcact tttaaagatt aacttaaaaa ttatttttct tggccaaaaa
      241 actggttttc aatatctgcc acagccaccc aattcgggct tgttttctca agcatttctt
      301 caggtgtttc tactgcaaag aataaccctg aatctatttc atttgacata atttcatatc
      361 ccggatattt aacaacaaaa gtttgtttgc cgcatgctaa tgcctcaaat aagctagttg
      421 aataaacacc tacagcaacg cgagattcat tgatgccttg tatagaagat tccgtggaga
      481 ttataagatt atcaggaata attctgttct ttaaatctat attttcatct ggatgcttag
      541 aaaataaaag ctgtagttga ggatttttta atgcaaactc aattgcaaaa ctaagcaagc
      601 gcgaagaaat cctactttga gatagaaaga tatagtcata attcagtttt tctgaaaatc
      661 tcacatcatc taatgcatac caatatgcgg caccagaacc aatctctcgt gttggatttg
      721 gtaaaagctc atgattccaa tattcagacc ataagaacaa tttatcagca acgtaatgtg
      781 attttggtga tttaaaatac gcaggatgat aaggagtaat ggcagcatat tgaatatcag
      841 ataccttaat accttgttta tgtgcagcac aaataatacc tggattccaa taagtgcttg
      901 gaaaaattac ctctttaaaa ttatttcttt tgaagaaatc atgaaaatat ttttcttcac
      961 gcttaaattt ttctaatcgt ggttttagaa atgcttcgat atttatgtta atgcctaaat
     1021 gctcataaat a
//
LOCUS       DAXIFS010000277         1002 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.277, whole genome shotgun sequence.
ACCESSION   DAXIFS010000277 DAXIFS010000000
VERSION     DAXIFS010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.277"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..273)
                     /locus_tag="ACFOCA_002011"
                     /pseudo
     CDS             complement(1..273)
                     /locus_tag="ACFOCA_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(310..801)
                     /locus_tag="ACFOCA_002012"
     CDS             complement(310..801)
                     /locus_tag="ACFOCA_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988649.1"
                     /translation="MKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRE
                     RYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEY
                     TIRDEADFAWHFDYLHFNPVKHGYVGQISDWRFSTFHRYVKQGIYPHNWGGGNADFSI
                     GYD"
BASE COUNT          252 a          255 c          238 g          257 t
ORIGIN      
        1 cgccttttgg gcggcagcgg gcgcacttag cctgttggcc gctttcaaaa ggttcaaaca
       61 catcgccttc aggtggcttt gcgcactcac tttaatcagt ccgaaatagg ctgcccgcgc
      121 atagcggaac ttacggtgca gcgtaccgaa gctctgttcg accacataac gggtcttcga
      181 caaatatcgg ttacgtttgg tttgcacttc cgacagcgga cggttgcggc aggctttgcg
      241 cataatgccg tcctgcagcc gatgctcttt cagttttccg taggtcggat tctcgaatcc
      301 gacattactt caatcgtatc caatagaaaa gtccgcattg ccgccacccc aattatgcgg
      361 ataaataccc tgtttgacat aacggtgaaa cgtagaaaac cgccaatcgg aaatttgtcc
      421 tacatagcca tgtttgaccg gattgaaatg cagataatca aaatgccagg caaaatcggc
      481 ctcatcgcgg atagtatatt cccaaaagcg tttttgccaa agcctgagat tgccgccgat
      541 taaatattgg ctgtgccgct tgatttgccg ccagcgttcc gaataagcag aatcattgtc
      601 cggcagccgc catatggtat gcagatggtc gggcatcaac acccatgcca aaatttcaaa
      661 cggataccgt tcgcgcaccg ccattaccgc ctgccgtaaa gccaaacgca ccgcatcatc
      721 ggtcaaaatc ttctgccgtt tattggttac aaccgtaaaa aagtaagtgc cgccattgcg
      781 gtaaaaacga cggtatttca tagtattatg ctcggaatga ttttgtaggt cggattcttg
      841 aattcgacat tttgggcatt gctgcaatgg attgcaatga tgggaatgtt aaaggttttg
      901 tcggatacaa gtatccgacc tacgcttgct gaaccgtcat tcccacggaa gtgggaatct
      961 agaacgcggg gtttcagtca tttccgatag attcccgccg cg
//
LOCUS       DAXIFS010000278          986 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.278, whole genome shotgun sequence.
ACCESSION   DAXIFS010000278 DAXIFS010000000
VERSION     DAXIFS010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.278"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..158)
                     /locus_tag="ACFOCA_002013"
     CDS             complement(<1..158)
                     /locus_tag="ACFOCA_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6988650.1"
                     /translation="MSTFFQQTAQAMIAKHIDCFPLLKLDQVIDWQPIEQYLNRQRTR
                     YLRDHRGRP"
     gene            complement(382..>986)
                     /locus_tag="ACFOCA_002014"
     CDS             complement(382..>986)
                     /locus_tag="ACFOCA_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6988651.1"
                     /translation="KSTLTKLVQRLYVPEQGRVLVDGNDLALAAPAWLRRQVGVVLQE
                     NVLLNRSIRDNIALTDTGMPLERIIEAAKLAGAHEFIMELPEGYGTVVGEQGAGLSGG
                     QRQRIAIARALITNPRILIFDEATSALDYESERAIMQNMQAICANRTVLIIAHRLSTV
                     KTAHRIIAMDKGRIVEAGTQQELLAKPNGYYRYLYDLQNG"
BASE COUNT          223 a          272 c          255 g          236 t
ORIGIN      
        1 ggacggccgc ggtggtctct gaggtaacgg gttctttgac ggttcaggta ttgttcgatc
       61 ggctgccaat caattacctg gtccaacttc aatagtggga agcagtcgat gtgcttggca
      121 atcatggctt gcgcggtttg ttgaaagaag gtgctcatgg aaaatcccct aaatgtcttg
      181 gtgggaattt aggggatttt ggggaatttt gcaaaggtct ctagatgagt gaaaaagaag
      241 tgcaggctgc ctaaaaagac agaaaaagtc tttccggcag cctgcacttt ggtttcattt
      301 cagtcagtaa acccagtaaa cgacggtctg aaaacgcaga acgttacgaa aaaagcagcc
      361 tacacgccca tcccccgcct tctacccgtt ctgtaaatca tacagatagc ggtaatatcc
      421 gttcggcttc gccagcaatt cctgctgtgt tcccgcttcc acaatcctgc ctttatccat
      481 ggcaatgatc cggtgtgccg ttttaacagt ggacagacgg tgggcgataa tcagcaccgt
      541 ccggttggcg caaatggcct gcatgttctg cataatcgct cgttcacttt cataatccag
      601 cgcgctggtg gcttcatcaa aaatcagaat gcgcggattg gtgattaacg cgcgggcaat
      661 cgcaatacgc tgccgctgtc cgcccgacaa gccggcccct tgttcgccca ccacggtgcc
      721 gtagccttcc ggcagctcca taataaactc gtgtgcgccc gccagtttgg ctgcttcgat
      781 aatgcgttcc agcggcatac ccgtatccgt cagcgcgata ttgtcgcgta tgctgcggtt
      841 gagcagcaca ttctcctgca agaccacgcc gacctgccgc cgcagccagg caggagcggc
      901 caaagccaaa tcgttgccgt ccaccaacac ccgtccctgc tccggtacat acagacgctg
      961 caccaatttg gtgagtgtgg atttgc
//
LOCUS       DAXIFS010000279          965 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.279, whole genome shotgun sequence.
ACCESSION   DAXIFS010000279 DAXIFS010000000
VERSION     DAXIFS010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.279"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..193
                     /locus_tag="ACFOCA_002015"
     CDS             <1..193
                     /locus_tag="ACFOCA_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988652.1"
                     /translation="LPEEVSFYVKQGVDLIYEKYKRKFFISEISFCQSDSRPSSIYAF
                     LTFHLLEDIIKNESPSNYT"
     gene            313..753
                     /locus_tag="ACFOCA_002016"
     CDS             313..753
                     /locus_tag="ACFOCA_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafB"
                     /protein_id="HFC6988653.1"
                     /translation="MAGGNKPPKPSTQQHPTHSDNNIGLPASYVKPDTSISPTGTIQD
                     RIRWTKSKFPTEKSLNGHFKAHGKEFGDITIEDYQKMASDLLSKQTSDKILGYQTEHR
                     RVRYDINNNIYVLANPKTFKIKTMFKPNLGKKYYDGEFKKDMGN"
     gene            719..925
                     /locus_tag="ACFOCA_002017"
     CDS             719..925
                     /locus_tag="ACFOCA_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPCC family cysteine-rich protein"
                     /protein_id="HFC6988654.1"
                     /translation="MMENSKKTWEIDGEIWLHCPVCGTEVMDYDICDVCQWQNTGETN
                     IDGGPNEMTLAEAKEAYAKDLPIR"
BASE COUNT          346 a          183 c          188 g          248 t
ORIGIN      
        1 ccttcctgag gaagttagtt tttatgtaaa acaaggtgtt gatttaattt atgaaaaata
       61 taaacggaaa ttctttatct ccgaaatttc tttttgccaa tcagatagcc ggccttcaag
      121 tatctacgct tttcttacat ttcacttgct tgaagatatt attaaaaatg aatccccatc
      181 caactacacc tgactggagg tacggtttgg ggcggtaaaa aagtagaact taacccgacc
      241 aaatgggatt gggttaaaaa taccggctat aaaacaccta ctgcccgccc tatgcagact
      301 ttagatgggg agatggcagg tgggaataag ccaccaaaac caagtacgca gcaacaccct
      361 acacactctg ataacaatat cggcttacct gcctcatatg ttaaacctga tacatctatt
      421 tctccgacag gaacaattca agaccgcatc agatggacaa agtccaagtt tcctactgag
      481 aaatctttaa atggacattt caaagctcat ggaaaagaat ttggcgatat aaccattgaa
      541 gactaccaaa aaatggcgtc tgatttgtta tcaaaacaga catcggacaa gatattaggt
      601 tatcagacgg aacatagacg agtgcgctat gatatcaata acaatatcta tgttttggcc
      661 aatccaaaaa cattcaaaat caaaacaatg tttaaaccaa acttaggaaa gaagtattat
      721 gatggagaat tcaaaaaaga catgggaaat tgacggagaa atatggctac attgtcctgt
      781 ttgcggaact gaagttatgg actatgatat ctgtgacgtt tgtcagtggc aaaatacagg
      841 agaaactaat atagatggtg gccctaatga aatgacactt gcggaggcga aagaagctta
      901 cgcaaaagac ttaccaatca gataaataag cacctagaga aatcaatgat gacggaatcc
      961 catgg
//
LOCUS       DAXIFS010000280          963 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.280, whole genome shotgun sequence.
ACCESSION   DAXIFS010000280 DAXIFS010000000
VERSION     DAXIFS010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.280"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..916
                     /gene="odhB"
                     /locus_tag="ACFOCA_002018"
     CDS             <1..916
                     /gene="odhB"
                     /locus_tag="ACFOCA_002018"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HFC6988655.1"
                     /translation="APAEAAPAAAPAAAQNNAAMPAAAKLAAESGVDVNALQGSGRDG
                     RVLKEDVQNAAAKPAAAAAPAVALPAGARPEERVPMSRLRARVAERLLASQQENAILT
                     TFNEVNMKPIMDLRAKYKEKFEKEHGVKLGFMSFFVKAAVAALKKYPVVNASVDGKDI
                     VYHGYFDIGIAIGSPRGLVVPILRDADQMSIADIEQAIVDYAKKAKDGKIAIEDLTGG
                     TFSITNGGTFGSMMSTPIINPPQSAILGMHATKERAVVENGQVVVRPMMYLALSYDHR
                     IIDGREAVLTLVAIKDALEDPARLLLDL"
BASE COUNT          235 a          267 c          241 g          220 t
ORIGIN      
        1 cgctcctgcc gaagctgccc cggccgccgc tcctgctgct gcacaaaaca acgccgctat
       61 gcctgccgcc gccaaactgg ctgcagagag cggtgttgac gtgaacgcat tgcaaggttc
      121 cggccgtgac ggtcgcgtat tgaaagaaga cgtacaaaat gccgcagcca aacctgccgc
      181 agccgctgct cctgccgttg cacttcctgc cggcgcacgt cctgaagaac gcgtaccgat
      241 gagccgcctg cgtgcccgtg ttgcagaacg cctcttggct tctcaacaag aaaacgccat
      301 tctgactaca ttcaacgaag tcaacatgaa accaatcatg gacttgcgtg cgaagtacaa
      361 agaaaaattc gagaaagaac acggcgtgaa actgggcttt atgtccttct tcgttaaagc
      421 cgctgttgca gccctgaaaa aatacccggt tgtgaatgct tctgttgacg gcaaagacat
      481 tgtgtaccac ggctacttcg acatcggtat cgcgattggc agcccacgcg gtttggttgt
      541 gccaatcctg cgcgatgccg accaaatgag cattgccgac atcgaacaag caattgttga
      601 ttacgcgaaa aaagccaaag acggcaaaat cgctatcgaa gatctgaccg gcggtacatt
      661 cagtattacc aacggcggta ctttcggttc tatgatgtcc accccgatca tcaatccgcc
      721 tcaatctgcg attttgggta tgcacgccac taaagagcgc gctgtggttg aaaacggcca
      781 agttgttgtc cgtccaatga tgtatctggc tctgtcttac gaccaccgta tcattgacgg
      841 ccgcgaagct gtattgacct tggtagccat taaagacgcg ttggaagacc cagcccgcct
      901 gttgttggat ctgtaatcgt ttcagacggc cttttatttg ttaatgaaaa ggccgtctga
      961 att
//
LOCUS       DAXIFS010000281          944 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.281, whole genome shotgun sequence.
ACCESSION   DAXIFS010000281 DAXIFS010000000
VERSION     DAXIFS010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.281"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(90..641)
                     /locus_tag="ACFOCA_002019"
     CDS             complement(90..641)
                     /locus_tag="ACFOCA_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988656.1"
                     /translation="MKVLNGWSDRKMWRVLSALPIGVVFFDLIYGFVLNVLQGLDLQR
                     AVPDLEGVLAVTPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFQ
                     MLGLVAVLAFSAPSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLV
                     GRFRLQTASGRAAKSGGAGKADG"
     gene            complement(695..944)
                     /locus_tag="ACFOCA_002020"
                     /pseudo
     CDS             complement(695..944)
                     /locus_tag="ACFOCA_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          270 a          315 c          178 g          181 t
ORIGIN      
        1 aaagaaaccg ccattagcac tacacccccc caagctgcgg ctgccaaaca catcggctgc
       61 ttctcgacgc acccgctgaa aaatgcgtcc tatccgtccg ccttgcccgc accccctgac
      121 tttgccgccc tgcccgatgc cgtctgaagc ctgaaccgcc ccaccagccc gatgacgcac
      181 gacaccgccg gaaagggcat acacaaagcc gtcagcacat aacgcgcatt ccccgtattg
      241 accacgtccg cgcccttcag cagcagcggt agcgcgttcg cccactccca caccgacggc
      301 gcgctgaacg ccaataccgc caccagcccc aacatctgga acaccccgat ttccaacacc
      361 tgccgccgcc gcaccgaacg gttgagcaaa aacacaaccg ccaacccgaa acagaccacc
      421 gccgccatac cgccgttggc gacaatctgc aaactgttga atgcaatatc gggcgtaacc
      481 gccaacacgc cttccaaatc cggcacggca cgctgcaaat ccaaaccctg caacacattc
      541 aacacaaaac cgtagatcaa atcaaaaaac accacgccta tcggcaaagc actcaaaacc
      601 cgccacatct tcctgtccga ccaaccgttc aaaactttca ttttacccga ccacgcaagc
      661 cgccgaacaa aaaataaggg gctgtcctag ataactagga caaacttgat tttactaatt
      721 gttttaaaat ggaacaagaa cttttatctc actgttgtta aaacgtcgtt cgcactcctt
      781 taaatacagc tcaaaatgcg ctttgggaat gccgttaaac ttgcgtaaat gacgttttgc
      841 ctggttccaa aagttctcaa ttccattaat atggttttgt cgttcagcaa aatgtgtgct
      901 gtgattgata cgaaaacgaa gtttcagcga agctaaaatg gcta
//
LOCUS       DAXIFS010000282          916 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.282, whole genome shotgun sequence.
ACCESSION   DAXIFS010000282 DAXIFS010000000
VERSION     DAXIFS010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.282"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            149..649
                     /locus_tag="ACFOCA_002021"
     CDS             149..649
                     /locus_tag="ACFOCA_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988657.1"
                     /translation="MSNYRRDFTRGAHYFFTLALQDRTKDYLIRHIDRLRLAYRETKT
                     RYPFETAAICILPDHLHFIMRLPEGDHDYPIRIAYLKTRFSQLIPKECRAPNGSKTKK
                     REAGIWQRRFWEHLIRDEQDLNNHRDYIYFNPVKHGYAASVKEWRYSSFFKDVEKGIY
                     PLDWGG"
     gene            714..>916
                     /locus_tag="ACFOCA_002022"
     CDS             714..>916
                     /locus_tag="ACFOCA_002022"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988658.1"
                     /translation="MRRRCVGWMCRVGFSPPIQPPPPIQPFPPTQTNHSANPRQKPKP
                     PNPDGLPKTLDAVELAGLDELVW"
BASE COUNT          249 a          259 c          224 g          184 t
ORIGIN      
        1 aacaccctac gaaacaccct acagcctaca catcagccct acgccctccc tacccatttc
       61 cctgcaaatc ccctaaaaat cctcccgcac gccctgaaaa caaggaataa tacaggtttc
      121 cgcccatcgg gctaaaaagg ggataaatat gtcaaattac cggagggact tcacgcgcgg
      181 ggcgcactat tttttcacat tggctttgca agacaggacg aaggattacc tgatacggca
      241 tatcgacagg ctgcgcctcg cctatcgtga aacgaaaaca cgttatccgt ttgaaacggc
      301 ggcaatttgt attttgccgg atcacctgca tttcattatg cggctgccgg aaggcgacca
      361 cgattacccg atacggattg catatttgaa aacccggttt tcccaactca tccccaaaga
      421 gtgccgcgcc cccaacggga gtaaaacaaa aaaacgcgaa gccggcattt ggcagcgcag
      481 gttttgggaa cacctgatcc gggacgaaca agatttaaac aaccaccggg attatattta
      541 tttcaacccc gtgaaacacg ggtatgcggc gagtgtgaag gaatggcgtt attcttcctt
      601 cttcaaagac gttgaaaaag gcatttaccc tttggattgg ggagggtaaa gctcccgccg
      661 ccgccaaaat ccgcaggacg gacgcggggc agatgagtcg ggcgggacgt agggtgaggc
      721 gtaggtgcgt agggtggatg tgtagggtgg gcttcagccc accaatccaa ccacctccgc
      781 caatccaacc attcccacca acccaaacca accattccgc caatccccgc caaaaaccga
      841 aaccgccgaa tcccgacggt ttgccaaaaa cccttgatgc ggtggaattg gcgggattgg
      901 atgagttggt ttggca
//
LOCUS       DAXIFS010000283          908 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.283, whole genome shotgun sequence.
ACCESSION   DAXIFS010000283 DAXIFS010000000
VERSION     DAXIFS010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.283"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(87..719)
                     /gene="mtrR"
                     /locus_tag="ACFOCA_002023"
     CDS             complement(87..719)
                     /gene="mtrR"
                     /locus_tag="ACFOCA_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     repressor MtrR"
                     /protein_id="HFC6988659.1"
                     /translation="MRKTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTR
                     GALYWHFKNKEDLFDALFQRICDDIENCIAQDAEDAEGGSWAVFRHTLLHFFERLQSN
                     DIYYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKE
                     TAVIFIKSTLDGLIWRWFSSCERFDLGKTAPRIIGIMMDNLENHPDLRRK"
BASE COUNT          201 a          202 c          239 g          266 t
ORIGIN      
        1 tgtattttta gaagaaggct ttgtgtcatt ttgatgccgt ctgaaagggt ttgttcgttt
       61 cagacggcat tgttaccaag gcttgattat ttccggcgca ggtcgggatg gttttccaag
      121 ttgtccatca ttatcccgat gatgcgcggg gcggttttgc ccaaatcgaa acgttcgcag
      181 gaagagaacc accgccaaat cagcccgtcc aaggttgatt tgatgaagat gaccgctgtt
      241 tccttgtcca aatcgtcagc caaatcctga ttttccaccg cttcggtcaa aacggcggta
      301 attttctcgc gccagattgc ctgatgcttg cgggcaatgg cgataacggc ggcgttttgc
      361 tccgtgtgtt cgcattttaa aaacaggatg ttgtggaatt tgtagtagat gtcgttgctt
      421 tgcagccgct cgaaaaagtg cagcagcgtg tggcggaata ccgcccaaga ccctccttcg
      481 gcatcttcgg catcttgcgc gatgcagttt tcgatgtcgt cgcagatacg ttggaacagc
      541 gcgtcgaaca agtcttcctt atttttgaaa tgccaataga gcgcgccgcg cgttacgccg
      601 gcggcttggg cgatttcgtt gagcgaggtg cgcgcaatcc ctttgcggta aaaggtttcc
      661 aaggcggcaa gcatcaggtg ttctttggtt ttcaaggctt cggttttggt ttttctcata
      721 atggcgtttt cgtttcgggt cggtttgatg agggcggatt ataaaaaaga ctttgtaacc
      781 atgcaatcgt gtatgtataa tgaaacccat gaaattgaga ctacatctca actttgaaaa
      841 caggcataac ctgctttgca acccgttcga acattcgggt atcaaagcag gcggttttta
      901 tatcctga
//
LOCUS       DAXIFS010000284          867 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.284, whole genome shotgun sequence.
ACCESSION   DAXIFS010000284 DAXIFS010000000
VERSION     DAXIFS010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.284"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(48..827)
                     /locus_tag="ACFOCA_002024"
     CDS             complement(48..827)
                     /locus_tag="ACFOCA_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HFC6988660.1"
                     /translation="MKLVRPQKISDQVLSVLEGRIVEGVYAEGGKIPPERVLAEEFGV
                     SRPSVRSALNVLVARQVLEARQGDGYYVSVKPQQDFLQSWQELLGKHSNWEQDVFDFS
                     CHIEGCMAALAAERRTDADLKRIGFWLEKFEEACESGNLEHQSEADVSFHQTIADAAH
                     NLLFSHLSGGLLKMLYRQTRSSLIYLNQEEDPRPKLMAQHRVLYEAISNRRPGEASEA
                     AKAHLNYVASSIMKDREYQSRNRHADTLAQNDLKRVQDWEV"
BASE COUNT          200 a          288 c          173 g          206 t
ORIGIN      
        1 ttcactatac cgatacatcc gaatatgcca gaccgtctaa acggtattca tacctcccaa
       61 tcctgcacgc gcttcaaatc gttttgcgcc aaagtatccg cgtggcggtt acggctctga
      121 tattccctgt ctttcatgat gctgcttgcc acataattca aatgtgcctt tgccgcctcc
      181 gaagcctcgc ccggccgacg gttcgatatc gcctcataca gcacgcggtg ctgcgccatc
      241 agtttcggac gcggatcttc ttcctgattc agataaataa ggctgctgcg cgtctgccgg
      301 tacagcattt tcaacaaacc gcccgacaaa tggctgaaca acaaattgtg cgccgcatcc
      361 gcaatcgtct gatggaagct gacatcggct tcgctctgat gttccagatt gccgctttcg
      421 cacgcctcct caaacttttc aagccaaaac ccaatccgct tcaaatcggc atccgtccgg
      481 cgttctgccg ccaatgccgc catacagccc tcgatgtggc agctgaaatc aaaaacatcc
      541 tgttcccaat tggaatgctt gcccaaaagc tcctgccaac tttgcaaaaa atcctgctgc
      601 ggcttgaccg aaacataata accgtctccc tgcctcgctt ccaaaacctg acgggcgacc
      661 aaaacattca atgccgacct gaccgacggg cgggacacgc cgaactcttc cgccaaaacg
      721 cgttcgggcg gaatcttgcc cccttccgcg taaacccctt ccacgatgcg gccttccaat
      781 accgacaata cctgatcgct gattttctga ggccttacca gtttcatcac tcctccttta
      841 taaagattcc ctgccgaacc cttccga
//
LOCUS       DAXIFS010000285          827 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.285, whole genome shotgun sequence.
ACCESSION   DAXIFS010000285 DAXIFS010000000
VERSION     DAXIFS010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.285"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            15..698
                     /locus_tag="ACFOCA_002025"
     CDS             15..698
                     /locus_tag="ACFOCA_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6988661.1"
                     /translation="MQADLAYAAERITHDYPQATGANNTSTVSDYFRNIRAHSIHPRV
                     SVGYDFGGWRIAADYARYRKWNNNKYSVNTKNVQKNDNGNRQDLKTENQENGTFHAVS
                     SLGLSAIYDFKLNDKFDKFKPYIGVRVAYGHVRHSIDSTKKTTNVVTVAGAANTAPTI
                     YYAPETQNAYHESHSIRRLGLGVIAGVGFDITPKLTLDTGYRYHNWGRLENTRFKTHE
                     VSLGMRYRF"
BASE COUNT          236 a          249 c          171 g          171 t
ORIGIN      
        1 gcagcccgta ttatgtgcag gcggatttag cctacgccgc cgaacgcatt acccacgatt
       61 atccgcaagc aaccggtgca aacaacacaa gcacagtaag cgattatttc agaaacatcc
      121 gtgcgcattc catccacccc cgggtgtcgg tcggctacga ctttggcggc tggagaatag
      181 cggcagatta tgcccgttac agaaaatgga acaacaataa atattccgtc aacacaaaaa
      241 atgtgcaaaa aaacgacaat ggcaacaggc aagacctgaa gacggaaaat caggaaaacg
      301 gtacattcca cgccgtttct tctctcggct tatccgccat ttacgatttc aaactcaacg
      361 ataaattcga taaattcaaa ccctatatcg gtgtgcgcgt cgcctacgga cacgtcagac
      421 acagcatcga ttcgaccaaa aaaacaacaa atgttgttac cgtcgccggt gctgctaaca
      481 cagcacctac gatttattat gcaccagaga cgcaaaacgc ctatcacgaa agccacagca
      541 tccgccgctt gggtcttggt gtcatcgccg gtgtcggttt cgacatcacg cccaagctga
      601 ccctggacac cggataccgt taccacaact ggggacgctt ggaaaacacc cgcttcaaaa
      661 cccacgaagt ctcattgggc atgcgctacc gcttctgatt ccccgatacc gatgccgtct
      721 gaaccttcag acggcatttt ttacacaatt cccaccgttt cccatcattc ccgatacacc
      781 gtaatctcga aacccgtcat tcccgcgcag gcgggaatcc agacctc
//
LOCUS       DAXIFS010000286          826 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.286, whole genome shotgun sequence.
ACCESSION   DAXIFS010000286 DAXIFS010000000
VERSION     DAXIFS010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.286"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(207..764)
                     /locus_tag="ACFOCA_002026"
     CDS             complement(207..764)
                     /locus_tag="ACFOCA_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988662.1"
                     /translation="MMQKHKCLIDFILTVASQIAYADLPLSLEELLTDKGKFKLESSI
                     SYINTERNQSEFANPIYVQTSATKIATVMAMMITPVMAQNLDSQVFDSQNVKAIQLSQ
                     AEMKETQGEFVPIIAAAAFGGALGAWEYHGANLYNHGKLGTAQGAATAAGIGAATGVA
                     AKQGWLLLPEADWLEIWHGDRVFMH"
BASE COUNT          249 a          174 c          138 g          265 t
ORIGIN      
        1 tattaataat aaaataattt atcgtagcgc aaataaatcc caaaattgga acgattagaa
       61 aaaaaattaa tacacccatc atcatgcaaa ctctatatta ataaatagct aactaattct
      121 attgtggaaa ttagttagct aactaaaagt tattaatgat tatttccgag aattgactgc
      181 attgttggca gcattggccc caaaacctag tgcatgaata cccggtctcc atgccaaatt
      241 tccagccaat ccgcctccgg cagcagcagc cagccctgtt ttgccgctac tcctgttgcc
      301 gcaccgattc ctgccgcagt agccgcgcct tgcgcagttc ctaatttacc atgattatac
      361 aaattagcac catgatactc ccatgcacct aatgcaccgc caaaagcagc ggctgcaata
      421 atgggaacaa attcaccttg tgtttctttc atttcagcct gtgataattg aattgctttc
      481 acattttggc tgtcaaaaac ttggctgtct aaattttgcg ccattacagg tgtaatcatc
      541 atagccatta cagttgcaat tttcgttgcg ctggtttgca cataaatagg attagcaaat
      601 tcgctttgat tgcgttcagt gttgatgtag ctaatactgc tttctagttt gaatttaccc
      661 ttgtcagtca ataattcttc caaacttaaa ggtaagtcag cataagcaat ttggctggca
      721 acagtcaaaa taaaatctat tagacatttg tgtttttgca tcatttcgtt tgattttcta
      781 gtttttgaga atgatacaaa gtttttttac aaagtaaaga gtcact
//
LOCUS       DAXIFS010000287          824 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.287, whole genome shotgun sequence.
ACCESSION   DAXIFS010000287 DAXIFS010000000
VERSION     DAXIFS010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.287"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            347..793
                     /locus_tag="ACFOCA_002027"
     CDS             347..793
                     /locus_tag="ACFOCA_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6988663.1"
                     /translation="MKAIQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQMSEAL
                     TLAEGQKSAVVEYYSDNGTFPNSNTSAGIAASNEIKGKYVASVKVEGNASVASITATM
                     NSSNVNKDIKGKTLVLVGKQNSGSFSWECKKGSVDEKFLPSTCRTK"
BASE COUNT          269 a          213 c          168 g          174 t
ORIGIN      
        1 cccaccccca aaaaaaccaa aaaaaaccca atctgacaaa atctgacaaa aaacgtcagc
       61 ccgaaactga caaaaattgt cacaactgac aagaaacgtc agcccgccgc attattacgc
      121 cgcaagccgc gccgcgttga tataaaaaaa tacccatacc agacagacaa ataaaaaaat
      181 attctgtaaa atgccgagct gaaccctgtt ttggcacgcc gcttgctggt aagaaggcga
      241 accgaagtaa aaaaaaccac ggtcaaatac attacgggtt tacgtttgcg gcggatgccg
      301 caaatttcca atcaaactta aacattttca aacaggagtc atccaaatga aagcaatcca
      361 aaaaggtttc accctgatcg agctgatgat cgtcatcgcc atcgtcggta tcttggcagc
      421 cgtcgccctg cccgcatacc aagactacac cgcgcgcgcc caaatgtccg aagccctgac
      481 tttggcagaa ggtcaaaaat ccgcagtggt cgagtattat tccgacaacg gcacattccc
      541 gaacagcaat acttccgcag gtattgctgc ctctaacgag attaaaggta agtatgtggc
      601 atcggttaag gttgaaggta atgcctctgt tgcttctatt accgctacca tgaactctag
      661 taatgtgaat aaggacatca aaggtaaaac cttggtactc gtcggcaaac aaaactccgg
      721 ctcgttctct tgggaatgta aaaaaggttc tgtggacgaa aaattcttgc catctacctg
      781 ccgcaccaaa taaggacaat gaccgggttt gacccggtcg tgaa
//
LOCUS       DAXIFS010000288          822 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.288, whole genome shotgun sequence.
ACCESSION   DAXIFS010000288 DAXIFS010000000
VERSION     DAXIFS010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.288"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..228)
                     /locus_tag="ACFOCA_002028"
     CDS             complement(<1..228)
                     /locus_tag="ACFOCA_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6988664.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAVLFY
                     RKIRTVINHHLALAADEVFEGPVEPDESDFGG"
BASE COUNT          265 a          142 c          161 g          254 t
ORIGIN      
        1 tccgccgaaa tcgctttcgt ccggctcgac agggccctca aaaacctcat cggcagccaa
       61 ggccaaatga tggttgataa ccgtgcggat tttacggtag aacagtactg ccgaattggg
      121 atggataccc aaaatatcgg cggcagaacg ggcggtaact tccagcacaa aaaaacggag
      181 cagttctttc tgtacttttt tctttaattt gcagtgtgtt atcttcatat ttcgagggta
      241 acatatctgc taatctagta cagccccaaa atataccaaa aacagcaaaa caaattgtaa
      301 ggatacgtat aggctttgta aaggtagatt gtgaaaaaag cagtttttta aacgaatgaa
      361 acggcttcgg gctgaaatat atgctgatgc cctgtccttc ccgtatatct tgtgtgttgt
      421 caaagtgcag gctgctttga aattggcatt acagtcgatg aaccaccatt ttgctttatt
      481 tcagcgggct tgagatgtgt ataagaatat tgttttgaat aaatttaaag aaaatgataa
      541 tcgttattga cgatttttaa aggaaagcgt agagtgccaa ttctatgaag caatacggta
      601 agtaacaatg aaaatatcta ctgcttgggt atagagcata tttcacaacc cgtaactatt
      661 cttgcggaaa cagagaaaaa agtttctctt ctatcttgga taaatatatt taccctcagt
      721 ttagttaagt attggaattt atacctaagt agtaaaagtt agtaaattat ttttaactaa
      781 agagttagta tctaccataa tatattcttt aactaatttc ta
//
LOCUS       DAXIFS010000289          772 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.289, whole genome shotgun sequence.
ACCESSION   DAXIFS010000289 DAXIFS010000000
VERSION     DAXIFS010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.289"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            88..606
                     /locus_tag="ACFOCA_002029"
     CDS             88..606
                     /locus_tag="ACFOCA_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988665.1"
                     /translation="MKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGVIAVKKE
                     KGNYFLNKINVFTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKT
                     DAAMKDKIIAHQKKCGQTAQAYLDARKALPSNQTYQQRQAAIEQLKRRFEAEFDELEK
                     EIKCNGKPTLLL"
BASE COUNT          227 a          157 c          221 g          167 t
ORIGIN      
        1 caactatagt ttttgcaaat caatattgac aagctgaaaa aaaaaaacaa tatactcgct
       61 cggtcttaat gttaacggag tatggaaatg aaacaaatgc ttttagccgt cggcgtggtg
      121 gcggtgttgg cgggctgcgg caaggatgcc ggcggttacg agggttattg gcgcgaaaag
      181 tcggacaaaa aagagggcgt gattgccgtc aaaaaagaaa aaggcaatta cttccttaat
      241 aaaatcaacg tatttacagg caaggaggag tctttgcttt tgtctgaaaa agacggcgcg
      301 ctttcgataa acacggggat aggggaaatc ccgatcaaac tttccgacga cgggaaagag
      361 ctgtatgtcg aacgcaggca gtatgtcaaa accgatgcgg cgatgaagga caaaatcatc
      421 gcccatcaga aaaagtgcgg acaaacggca caggcatacc tcgacgcgcg aaaggcgttg
      481 ccgtcaaacc aaacgtatca gcagcgtcag gcggcgatcg agcagttgaa acggcggttt
      541 gaagccgagt ttgacgaatt ggaaaaagaa atcaaatgca acggcaaacc gacattgttg
      601 ctttagcaga ggacaaccgg gaggatgccg ccgtccgaat cggacgtgcg gttttcgtac
      661 cggtacgggc gggcaggaat gtccgctttt tttgttcgga cgcgtttgaa tacccgtttg
      721 attccgtccg tttgcaaggg gtatttccgt tcgggcggaa attatagtgg at
//
LOCUS       DAXIFS010000290          768 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.290, whole genome shotgun sequence.
ACCESSION   DAXIFS010000290 DAXIFS010000000
VERSION     DAXIFS010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.290"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..434)
                     /locus_tag="ACFOCA_002030"
     CDS             complement(<1..434)
                     /locus_tag="ACFOCA_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HFC6988666.1"
                     /translation="MLTFIGLLIIGVIVWLLLTEKVSPIIALILVPLFGALLAGFDVS
                     QLKEFYSGGTKSVMQIVIMFMFSILFFGIMNDVGLFRPMIGGLIKLTRGNIVAVSVGT
                     VLVSVVAQLDGAGATTFLLVVPALLPLYKRLHMNPYLLFLLLT"
BASE COUNT          221 a          237 c          160 g          150 t
ORIGIN      
        1 gtcagcagca aaaacagcag gtaaggattc atatgcagac gcttgtaaag cggcaaaagg
       61 gcggggacga ccaataaaaa cgtcgtcgca cccgccccgt ccaactgcgc caccaccgac
      121 accaagaccg tccccacact cactgccacg atattacccc gagtcagctt aatcaaaccg
      181 cctatcatcg gacggaacag ccccacatcg ttcatgattc caaaaaacaa aatggaaaac
      241 ataaacataa tcacaatctg catcaccgat ttggtgccgc ccgaataaaa ttcttttaat
      301 tgggatacat caaaccccgc cagcaacgcc ccaaacagcg gcaccaagat taatgcgatg
      361 atgggcgaca ctttttccgt cagcagcaac catacgatga ccccgataat cagcagtccg
      421 ataaacgtca gcatcatttc tcctttattt tattttaaac agaaaaccga ccgtgcaggc
      481 aaaaccgccc acagacgcgg gataagcctt gcattctact tttttatttt gaaacaagtc
      541 aatcggtcat ttcctcccat ttacgcctgc cgccattcct gtatccgtcc gtcatttcac
      601 ggcggcaacc gatacggaac aaccggcaaa ccggtatcgg gacggcgcgg gggcattcat
      661 cccggtgcgc cgattcaaac gaaaccgccc ctatcattgc ggagcgccga ttcaaacgaa
      721 accgccccta tcattgcgga gcgcggggcg tgccgtacac gcgggatt
//
LOCUS       DAXIFS010000291          731 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.291, whole genome shotgun sequence.
ACCESSION   DAXIFS010000291 DAXIFS010000000
VERSION     DAXIFS010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.291"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..534
                     /locus_tag="ACFOCA_002031"
     CDS             <1..534
                     /locus_tag="ACFOCA_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224706.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
                     /protein_id="HFC6988667.1"
                     /translation="ATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSVAEAAGT
                     VWGGKKVELNPTKWDWVKNTDYKTPAARPMQTLDGEMAGGNKPVVKSIRPTTRDELRQ
                     ALQEQGFRRTGSDAAQYETWKGPDGVKIDIRPNGEVIRTQRVPRTDGVQGKYPQRQDY
                     EGNPLPNNHHHSGYFVK"
     gene            531..>731
                     /locus_tag="ACFOCA_002032"
     CDS             531..>731
                     /locus_tag="ACFOCA_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988668.1"
                     /translation="MKKNIFHNVSLYEIIFSDNGNTLTLSFTDTIEGNYFGYIKCSNI
                     LNFKLDTNNFVDYEDKEDSLFPL"
BASE COUNT          254 a          133 c          153 g          191 t
ORIGIN      
        1 gcaaccgcat tacaagacag tgcttttgcg gtaaaagacg gtatcaactc tgccaaacaa
       61 tgggctgatg cccatccgaa tataacagca acagcccaaa ctgccctttc cgtagcagag
      121 gccgcaggta cggtttgggg cggtaaaaaa gtagaactta acccgactaa atgggattgg
      181 gttaaaaata ccgattataa aacacctgct gcccgaccta tgcagacttt agatggggaa
      241 atggctggtg gaaacaagcc agttgttaaa tctatcagac caactacgcg agatgaatta
      301 cgtcaagcat tgcaagaaca aggttttaga cgtactggtt cagatgcggc tcaatatgaa
      361 acatggaaag gtcctgatgg cgtgaaaata gatattcgtc caaatggaga ggttataaga
      421 acccaaagag tgccgcgaac cgatggtgta cagggaaaat atccgcaacg acaagattat
      481 gaaggcaatc cattgccaaa taatcatcat cattctggat attttgtcaa atgaaaaaaa
      541 atatttttca caatgtaagc ctttatgaaa taatcttttc cgataatgga aataccctta
      601 cattatcttt tacagataca attgaaggta attatttcgg atatatcaaa tgcagtaata
      661 ttttgaattt taaattagat acaaataatt tcgtagatta tgaggataag gaagatagct
      721 tgtttccctt g
//
LOCUS       DAXIFS010000292          725 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.292, whole genome shotgun sequence.
ACCESSION   DAXIFS010000292 DAXIFS010000000
VERSION     DAXIFS010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.292"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(128..>725)
                     /locus_tag="ACFOCA_002033"
     CDS             complement(128..>725)
                     /locus_tag="ACFOCA_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HFC6988669.1"
                     /translation="LSIGQIVKVKPAGYAAPKTSAVESRPAVPAAVQTPVKPAAQPPV
                     QSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGV
                     DIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQV
                     KRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF"
BASE COUNT          161 a          206 c          196 g          162 t
ORIGIN      
        1 caaacacagt caaacaaatt tatatgcccc atcccttccg aataatttga aaacacagcc
       61 gccaaaaaca aaaatgccgt ctgaaaacct ttcagacggc atttccaatt tgatttcagg
      121 cagaaagtca gaacgcgata tagctgttcg ggttaaccgg tttgccgttt tgccgcacct
      181 cgaaatgaag ctgcgttctg gaagcgtcgg tattgcccat caaagcgacc tgctgcccgc
      241 gtttgacctg ctggccttcg ccgaccagca atttttggtt gtgcccgtat gcggtcagga
      301 aggaagaatt atgctggatg atgaccagat tgccgtatcc cctcaaaccg gaacctgcat
      361 aaaccacttt gccgtcagcc gccgccaaaa cgggttgtcc cgcatttcct gcaatatcga
      421 cacccttgtt gttgccgccg aaatcggcaa ccactttacc ttgcgtcgga cgctgccaaa
      481 caatgccgcc gaccgaacgc gttccggaag gcgaagcggc aggagattgc ggggcgggcg
      541 cgggaaccgc tttattttcc gcagcgggcg cggcaggttg cggcgcggac tgcacaggcg
      601 gttgcgcggc gggtttcaca ggggtttgca cggcagccgg tacggcgggc ctgctttcta
      661 cggctgaggt tttcggtgcg gcatatcctg ccggtttgac tttaacaatc tgaccgatgc
      721 tcaac
//
LOCUS       DAXIFS010000293          717 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.293, whole genome shotgun sequence.
ACCESSION   DAXIFS010000293 DAXIFS010000000
VERSION     DAXIFS010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.293"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(23..715)
                     /locus_tag="ACFOCA_002034"
     CDS             complement(23..715)
                     /locus_tag="ACFOCA_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6988670.1"
                     /translation="MFHAFILRIYTMIKNISKLINHAVLIGFIPNIVFAYPIFAENPA
                     SYQNIHVRSWKARRDSGIVKQDLDFSCGAASIATLLNNFYGRHYSEAEILDKMDKTQM
                     RASFDDMQRIMPELGFEAQGYALPFEQLVQLKIPVIVYLKYRKNNHFSVLNGINGETV
                     LLADPSLGHVSMSKSQFLSAWKTRDGEMEGKILAIVPKNTDFVRNQMFFNKNPVRQTR
                     FTVEQIQMRQKR"
BASE COUNT          222 a          135 c          131 g          229 t
ORIGIN      
        1 taaatgggca aaaatcggtt tattatcgtt tttgccgcat ttggatttgt tctaccgtaa
       61 aacgtgtttg acgaacggga ttcttattaa aaaacatctg atttctaaca aaatcagtat
      121 tttttggcac gatggctaaa atttttcctt ccatttcgcc atcacgtgtt ttccatgcgc
      181 tcaagaattg tgatttgctc attgagacgt gccccagcga tggatcagcc agcaaaacag
      241 tttctccgtt aataccgttc aataccgaaa aatggttgtt tttacggtat tttaaataca
      301 caattacagg aatttttagt tgtaccaact gttcaaatgg caaagcataa ccttgtgctt
      361 caaaacccag ttcgggcatt atgcgttgca tatcatcaaa agaagcacgc atttgggttt
      421 tatccatttt gtccaagatt tccgcttcag aataatgtct gccataaaaa ttattcagta
      481 acgtggcaat cgaagccgcg ccgcaagaaa aatccaaatc ttgttttact atgccggaat
      541 ctcgccgtgc tttccaactc cgtacatgga tgttttggta agaagcgggg ttttcagcaa
      601 atatagggta agcaaaaaca atatttggga taaagccaat taaaaccgca tggtttatta
      661 atttagaaat attttttatc atagtatata tgcgtagaat aaacgcatga aacataa
//
LOCUS       DAXIFS010000294          715 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.294, whole genome shotgun sequence.
ACCESSION   DAXIFS010000294 DAXIFS010000000
VERSION     DAXIFS010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.294"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            296..607
                     /locus_tag="ACFOCA_002035"
     CDS             296..607
                     /locus_tag="ACFOCA_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein"
                     /protein_id="HFC6988671.1"
                     /translation="MLAILLSAILGLVSTTAAAGTSEPAHRDTKHIRKANKQMLHPEC
                     RKYLERRAAWYRSQGNVQELRENKKARKAFRSLPYAEQKIQCRAAYEAFDDFDGGSFR
                     R"
BASE COUNT          196 a          178 c          161 g          180 t
ORIGIN      
        1 tacaaggcgg tgaaataagg attttccgac gaaaaaggaa agcttcctgt tttctgcccc
       61 tgcaaattgt taaattttgc aaagtatgat tttgccgcgc cgccgccgac aaattccatt
      121 ttcttaccga ttggaattta ttattgagat taatgtgtta tttgaatctg catatcaaac
      181 ggcaagtttt gtcggctgaa tgagtctgaa actgccgaca atttgcccgt tccatccttc
      241 catcctatac tggaaagaat gacaaactga aaggatcgtc atgtctgtca aaaagatgct
      301 tgccatactg ttgtctgcaa tattgggact ggtatcgaca actgccgctg ccggtacgtc
      361 agaacccgcc caccgcgata ccaaacatat ccgcaaggca aacaagcaga tgctgcaccc
      421 cgaatgcagg aaatatttgg aacgccgtgc cgcgtggtac cgatcgcaag gcaacgtgca
      481 ggaattgcgc gaaaacaaaa aggcgcgcaa agcattccgc tccctgcctt atgcggaaca
      541 gaaaatccaa tgccgggcgg cttatgaggc tttcgatgat ttcgacggcg gcagtttccg
      601 ccgttaatcc catataaaat atgccgtctg aacacaggtt cagacggcat tttccataga
      661 tacaacaaac tatccttacg gcatttcgtt tgaggtgctc ccgttgccgc agcct
//
LOCUS       DAXIFS010000295          683 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.295, whole genome shotgun sequence.
ACCESSION   DAXIFS010000295 DAXIFS010000000
VERSION     DAXIFS010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.295"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            33..245
                     /locus_tag="ACFOCA_002036"
     CDS             33..245
                     /locus_tag="ACFOCA_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988672.1"
                     /translation="MKLINFEESSVKISLDKDELYIIQAIVGEIYSGVCVDCRDFEII
                     HGVEKIKFFLWIKNLKKYMILGINVS"
     gene            332..448
                     /locus_tag="ACFOCA_002037"
                     /pseudo
     CDS             332..448
                     /locus_tag="ACFOCA_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            510..>683
                     /locus_tag="ACFOCA_002038"
     CDS             510..>683
                     /locus_tag="ACFOCA_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMP12 family DNA mimic protein"
                     /protein_id="HFC6988673.1"
                     /translation="MNEHNLLIFCLKDNVSISEYTEMIDWAYKNIQSETVVEITESQI
                     IEYQNRGLWRLVSE"
BASE COUNT          250 a           86 c          136 g          211 t
ORIGIN      
        1 ttgatgacga attaaaataa aaggaattat tcatgaaatt aattaatttt gaagagagtt
       61 cagttaaaat tagtctcgat aaagatgagt tgtatattat tcaagcaatt gtaggagaaa
      121 tttattcagg cgtatgcgtg gattgtagag attttgagat aattcatggt gttgaaaaaa
      181 taaagttctt tctttggata aagaacttaa aaaaatatat gatacttggg ataaatgtta
      241 gctaggtaag gtgggcactt gttgcccacc ttttgccgta tattaaaaat ccttttcagg
      301 ctggaactgg gtgggcatca atgccaaccc taattgtgct gatgaagcag gaaaactgat
      361 atgggaaaac gaccccaata aaaattggtg ggctaaccgt atggatgata ttcgcggcat
      421 catccaaggt gcggttaatc ctttaattta caaggtaagc aagcaaaaga ttatttacaa
      481 caacaaactc atattaagaa cttagacaaa tgaatgaaca caacctgtta attttctgtt
      541 taaaagacaa tgtttcaatt agtgaatata ctgaaatgat tgattgggct tataaaaaca
      601 ttcaatctga aacagttgta gaaattacgg aaagtcaaat tattgaatat caaaatcgtg
      661 gattatggag acttgtttct gaa
//
LOCUS       DAXIFS010000296          665 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.296, whole genome shotgun sequence.
ACCESSION   DAXIFS010000296 DAXIFS010000000
VERSION     DAXIFS010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.296"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>665
                     /locus_tag="ACFOCA_002039"
     CDS             <1..>665
                     /locus_tag="ACFOCA_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
                     /protein_id="HFC6988674.1"
                     /translation="CSFHGSTLVKTADGYKAIAHIQAGDRVLSKDEASGETGYKPVTA
                     RYGNPYQETVYIEISDGIGNSQTLISNRIHPFYSDGKWIKAEDLKAGSRLYSESGKTQ
                     TVRNTVVKPKPLKAYNLTVADWHTYFVKGNRAETEGVWVHNECPPRKTPSTPIYGNDS
                     EAYAAAKELGYRKIKERTRNDAAIFKKGKSYISRDVDSHNGGAWKEASSPEKLNRKET
                     RNGT"
BASE COUNT          229 a          155 c          153 g          128 t
ORIGIN      
        1 tgctccttcc acggcagcac cttggtcaaa acggcagacg gctacaaagc cattgcccat
       61 attcaagccg gagaccgcgt cctttccaag gacgaggcaa gcggagaaac gggatacaaa
      121 cccgttaccg cccgatacgg caatccctat caagaaaccg tttacattga aatttcagac
      181 ggcatcggca acagtcaaac cctgatttcc aaccgcatcc atccgtttta ttcggacggc
      241 aaatggatta aggcggaaga tttaaaagcg ggaagcaggc tgtattccga aagcggcaaa
      301 acccaaacag tccgcaacac cgttgtcaaa ccaaaaccgc tcaaagccta caatctgacc
      361 gttgccgatt ggcatactta ctttgtcaag ggcaatcggg cggaaacgga aggggtttgg
      421 gttcataatg agtgtccgcc aagaaaaaca ccatctaccc ccatatatgg gaatgattca
      481 gaagcatatg cagcagcaaa ggaattggga tatagaaaaa taaaagaaag aacgagaaat
      541 gatgctgcta tttttaaaaa aggaaagagt tatatatcac gcgatgtaga ttcacataat
      601 ggaggtgctt ggaaagaggc atcttcaccc gaaaaactga acagaaaaga aacaagaaac
      661 ggtac
//
LOCUS       DAXIFS010000297          661 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.297, whole genome shotgun sequence.
ACCESSION   DAXIFS010000297 DAXIFS010000000
VERSION     DAXIFS010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.297"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
BASE COUNT          185 a          165 c          156 g          155 t
ORIGIN      
        1 gacagccggt tgcgcgcaac gacaaagccg acaccgacaa aatcgacacc aagcacctgc
       61 cgtcaacctg ccgcgacgca gcatctgccg attaaggcaa attataccat aaattttaaa
      121 taaatcaagc ggtaaatgat tttccacggc cactcggatt aatccgggtg gcttcctttt
      181 taaaggtttg caaggcaagc ggggtcgtcc gttttggtgg aaataatata tcgattgcgc
      241 ttcaaggctc tgcgcgtacc tcattgccgc ccgtttaaac acggggttta tctgacaggc
      301 gcgtaatccg ccctctcatt taccgaacaa gcgaactgga ttcccgccta ctcgggaatg
      361 acgaagctat ccgtacggaa acctgcaccg cgtcattccc acgaaagtgg gaatccagtt
      421 ttttgagttt cagtcatttc cgataaattg ccttagtatt gaatgtctag attcccgcct
      481 gcgcgggaat gacggcaacc ggccggttac gtatcaaaaa aataaagtaa ttcggctaga
      541 tatagtggat taacaaaaat caggacaagg cgacgaagtc gcagacagta caaatagtac
      601 ggaaccgatt cacttggtgc ttcagcacct tagagaatcg ttctcgttga gctaaggcga
      661 g
//
LOCUS       DAXIFS010000298          652 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.298, whole genome shotgun sequence.
ACCESSION   DAXIFS010000298 DAXIFS010000000
VERSION     DAXIFS010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.298"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(51..536)
                     /locus_tag="ACFOCA_002040"
     CDS             complement(51..536)
                     /locus_tag="ACFOCA_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HFC6988675.1"
                     /translation="MRFFGIGFLVLLFLEIMSIVWVADWLGGGWTLFLMAAGFAAGVL
                     MLRHTGLSGLLLAGAAMRSGGRVSVYQMLWPIRYTVAAVCLMSPGFVSSVLAVLLLLP
                     FKGGAVLQAGGAENFFNMNQSGRKEGFSRDDDIIEGEYTVEEPYGGNRSRNAIEHKKD
                     E"
BASE COUNT          195 a          211 c          116 g          130 t
ORIGIN      
        1 tcaaaccgga aaaatgccgt ctgaatcttc agacggcatt ccattcatat ttattcgtct
       61 tttttgtgtt cgatggcgtt tcgggaacga ttgccgccgt aaggctcttc aaccgtatat
      121 tccccctcga taatatcgtc atcgcgggaa aagccctctt ttctgcccga ttggttcatg
      181 ttgaaaaaat tttccgcacc tcctgcctgc aacactgcac ctcccttaaa cggcagcagc
      241 agcaataccg ccaacaccga ggatacgaat cccggactca tcagacacac cgccgccacc
      301 gtataacgga taggccacaa catctgataa acggataccc tcccgccgct tctcattgcc
      361 gcgcccgcca ataaaagacc ggacagcccc gtatgcctga gcatcagcac accggcggca
      421 aaacctgccg ccatcaaaaa caacgtccag ccgccgccca accaatcggc aacccacaca
      481 atcgacataa tctccaaaaa cagcagcacc aaaaaaccga taccgaaaaa tctcattgac
      541 cgtcatcctt atatttaagt aaacagcaaa ccgcccgaac aagactccaa gcgacctgcc
      601 tgtaaatgat tacaaaacca tgtgcttcaa gccgaaacaa tgtgaaatca cg
//
LOCUS       DAXIFS010000299          637 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.299, whole genome shotgun sequence.
ACCESSION   DAXIFS010000299 DAXIFS010000000
VERSION     DAXIFS010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.299"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..146)
                     /locus_tag="ACFOCA_002041"
     CDS             complement(<1..146)
                     /locus_tag="ACFOCA_002041"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HFC6988676.1"
                     /translation="MQNSAVLINTFEVPQGKEAETLAAWQKSRDFLKTQPGYIGTRLH
                     QNIV"
     gene            complement(169..354)
                     /locus_tag="ACFOCA_002042"
     CDS             complement(169..354)
                     /locus_tag="ACFOCA_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988677.1"
                     /translation="MGVCLDACCSAAGIARQIGKGGEIHGTLAFSLLFLSLGHIGMVA
                     YHHIKGESVLPRMLGKS"
BASE COUNT          165 a          168 c          159 g          145 t
ORIGIN      
        1 tccactatat tttgatgcag acgtgtaccg atgtagcccg gctgggtttt caggaaatcg
       61 cgtgatttct gccaagcagc caaagtttcg gcttctttgc cctgcggcac ttcaaaggtg
      121 ttgatgagta cagcactgtt ctgcatgatt taaatttaat ccactatatt aagattttcc
      181 gagcattcga ggcagcacgg attcgccttt gatgtggtgg taggcaacca ttccaatgtg
      241 tcccaacgac aaaaacagca atgaaaatgc cagcgtgccg tgaatttctc cgcccttgcc
      301 gatttgacgg gcaatgcctg cggcggaaca gcaagcatca aggcatacgc ccaatgctca
      361 atttggtgac ggcggtgttg gcggggcggt ttttacgttg gcggattccc cacccttgta
      421 tatcggaact cctgtatcat agcaacaaac cgcccgaccg ccacccgcgc ccaccaaaag
      481 cagacaaccg ttgcgtagct cagggagcgg cagggtaacc catcgacaca accggacagt
      541 tgccggacaa cacaaccgaa tgcaaggcag gttgatgatg agtacccgat accattacgc
      601 aggtatagtg aattaacaaa aaccagtacg gcgttac
//
LOCUS       DAXIFS010000300          633 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.300, whole genome shotgun sequence.
ACCESSION   DAXIFS010000300 DAXIFS010000000
VERSION     DAXIFS010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.300"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            172..465
                     /locus_tag="ACFOCA_002043"
     CDS             172..465
                     /locus_tag="ACFOCA_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988678.1"
                     /translation="MKTNDKLNRQIDVLQKQSAAIHNEAYIEMNTLLYRHREVVSVHN
                     RKADYAEKGKERIALFPRGLNGITKLPAAVLLPERPDCFDMKAVWQMFNRIPR"
     gene            complement(446..>633)
                     /locus_tag="ACFOCA_002044"
     CDS             complement(446..>633)
                     /locus_tag="ACFOCA_002044"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988679.1"
                     /translation="TPYWFLLIHYKTKQENTAAITVQTGMTGCILICSTATMPSERFR
                     FRRHFYPAADTPTSVFY"
BASE COUNT          170 a          155 c          168 g          140 t
ORIGIN      
        1 tccattcggc agggaaagcc tgaagaagaa ttttcccgta agatggccgg ctgcctgacc
       61 gacttggaaa actgtttgga aaaatacctc gaacagttcg ggccggtatc ggaaagtatc
      121 gaagcctgta ccgtcaaact gcaggagtaa ccgtcgttct tcaacaggct gatgaaaacc
      181 aacgacaagc tcaataggca gattgacgtg ttgcagaaac agtcggcagc catccacaac
      241 gaagcctata tcgaaatgaa cacgctgctt taccgccacc gcgaagtggt ttccgtccac
      301 aaccgcaagg cggattatgc ggaaaagggc aaagagcgga ttgcgctgtt cccgcgcggc
      361 ttgaacggca tcaccaagct gcctgccgcc gtcctgttgc ccgagcgtcc cgattgtttt
      421 gatatgaagg cagtttggca aatgtttaat agaataccga ggtaggcgta tcggctgccg
      481 gataaaaatg ccgtctgaaa cggaagcgtt cagacggcat tgttgcagtg gaacaaatca
      541 aaatgcaccc cgtcattcct gtctgtacgg tgatagcggc agtgttttcc tgcttcgttt
      601 tatagtggat taacaaaaac cagtacggcg ttg
//
LOCUS       DAXIFS010000301          626 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.301, whole genome shotgun sequence.
ACCESSION   DAXIFS010000301 DAXIFS010000000
VERSION     DAXIFS010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.301"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..>626)
                     /locus_tag="ACFOCA_002045"
     CDS             complement(<1..>626)
                     /locus_tag="ACFOCA_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6988680.1"
                     /translation="HDISRFYDDYVLSINNLPTENIFFSIHDVSDHLENSKGYRRGYI
                     RSEDDIWSIWRKIVLPKISYLSILKLLPVKDIEDSEPLFYFRIFLDYQFRSIVHPQLL
                     SREKLEIPASEFNQFVEQEIIKQKSRKGQQKYRKDVINHMPQCPFTLITDEVLLRASH
                     IKPYMVCITEKNEKEALDYLNGLALTPTYDWLFDQGYITFLDDGRLICG"
BASE COUNT          217 a          117 c           87 g          205 t
ORIGIN      
        1 ccgcaaatca aacgaccatc atccaagaaa gtaatataac cttgatcgaa caaccaatca
       61 taagtcggcg ttaaagctaa cccatttaaa taatctaatg cctctttctc atttttctca
      121 gtaatacaaa ccatataagg tttaatatga ctagccctta acaaaacctc atctgtaatt
      181 aatgtaaatg gacattgcgg catatgattt ataacatcct tgcgatattt ctgctgccct
      241 tttctacttt tctgtttaat gatttcttgc tctacgaatt gattaaattc tgaagccggt
      301 atttctaatt tttctcttga taagagttgc gggtgcacga tagagcgaaa ttgataatcc
      361 aaaaatattc ggaaataaaa taatggttct gaatcttcta tatctttgac aggcaatagt
      421 ttaagaattg ataaataact aattttgggc aatacaatct tacgccaaat tgaccatata
      481 tcatcctccg aacggatata acccctacgg taacctttag aattttccaa atggtctgat
      541 acatcatgga ttgaaaagaa aatattttct gtaggcagat tattaatact taaaacgtaa
      601 tcatcataaa accttgaaat atcatg
//
LOCUS       DAXIFS010000302          618 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.302, whole genome shotgun sequence.
ACCESSION   DAXIFS010000302 DAXIFS010000000
VERSION     DAXIFS010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.302"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..189
                     /locus_tag="ACFOCA_002046"
     CDS             <1..189
                     /locus_tag="ACFOCA_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988681.1"
                     /translation="NKDLDIAGLSLTCFGHLARLHSNIGDYDKVISLLHSKQDDPELQ
                     GRAEDALEDISLFLSENH"
     gene            complement(309..>618)
                     /locus_tag="ACFOCA_002047"
     CDS             complement(309..>618)
                     /locus_tag="ACFOCA_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988682.1"
                     /translation="FNLHNRFPYLIFVFLLPCRIKQVCLRTVYPHIYFPAIGFYLPGF
                     TVFANFAALAAAMLKAASTVSAALGLTRTHPQTATRRTVFAFQPSAVLTKVLPWKEQV
                     "
BASE COUNT          198 a          131 c          141 g          148 t
ORIGIN      
        1 aataaagact tggatattgc cggattatcg ctaacctgtt tcggacatct cgccaggcta
       61 cattcaaata tcggtgatta cgataaagtt atttctttac tacattcaaa gcaagatgat
      121 ccagagcttc aaggtagggc tgaagatgcg ttagaagata tttctttatt tttatctgaa
      181 aatcattagg aaccgtaggt cgggttgaaa acccaacaat caaaatgccg tctgaaaccg
      241 tgtttaattt tcagacggca tttccttcgt ttgaaatagg atattgagaa ctgagttctt
      301 caaaaatcct acacttgctc cttccacggc agcaccttgg tcaaaacggc agacggctga
      361 aaagcaaaca ccgtccgtcg tgttgccgtt tgcggatgag tacgggtcaa ccccaatgcc
      421 gccgaaaccg tcgaagccgc cttcaacatt gccgccgcca aagccgcaaa gttggcaaaa
      481 acggtaaaac cggggagata aaagccgatg gcaggaaagt aaatgtgagg atagacagta
      541 cggaggcaga cctgctttat ccggcagggc aataagaaaa caaaaattag atatggaaaa
      601 cgattgtgaa gattaaac
//
LOCUS       DAXIFS010000303          580 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.303, whole genome shotgun sequence.
ACCESSION   DAXIFS010000303 DAXIFS010000000
VERSION     DAXIFS010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.303"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..430
                     /locus_tag="ACFOCA_002048"
     CDS             <1..430
                     /locus_tag="ACFOCA_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6988683.1"
                     /translation="TLMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNIHTYI
                     NKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLF
                     DTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL"
BASE COUNT          205 a          153 c           82 g          140 t
ORIGIN      
        1 aaccctaatg cgcccaatct tcctatcttt cgttttactc cctattttga taaccgcctg
       61 cagcacaccg gacaagtctg cccgatggga aaatatcggc acaatctcaa acggcaatat
      121 tcatacatat atcaataaag acagcgtgag aaaaaacgga aatctgatga ttttccaaga
      181 taaaaaagtt gttaccaatc taaaacaaga acgttttgcc aacacccccg catacaagac
      241 tgccattgcc gagtgggaaa tccactgcaa caacaaaaca taccgcttaa gttcgctaca
      301 gttgtttgat acaaaaaaca cggaaatttc cacacaaaac tacacagcct cttccctccg
      361 cccgatgagc atcctgtccg ggacattaac cgaaaaacaa tatgaaaccg tatgcggaaa
      421 aaaactctga ttgcaactta tacacaaact tacccacaaa ccttatcata aaaatgccgt
      481 ctgaaatact gaaatatcag catttcagac ggcattttgc cattccctga aaattatcca
      541 caaagttatc cacattattt tttaaaaccg gcttccatcc
//
LOCUS       DAXIFS010000304          571 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.304, whole genome shotgun sequence.
ACCESSION   DAXIFS010000304 DAXIFS010000000
VERSION     DAXIFS010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.304"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(47..331)
                     /locus_tag="ACFOCA_002049"
     CDS             complement(47..331)
                     /locus_tag="ACFOCA_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988684.1"
                     /translation="MAGGNKSLKIGTQSVEKSTGRTIPNNLKEQLAMEEVKANPQGKT
                     PARIPPMSDTKNGWLAKDGWVKRVQNVNKIEIHYIENTRTGEKTDFKFKD"
     gene            complement(314..571)
                     /locus_tag="ACFOCA_002050"
                     /pseudo
     CDS             complement(314..571)
                     /locus_tag="ACFOCA_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
BASE COUNT          133 a          120 c          108 g          210 t
ORIGIN      
        1 gtatttaaat catctaaaaa aacatttaca tcatctaaaa acatgactaa tccttaaact
       61 taaaatctgt tttttcaccg gttcttgtgt tttcaatgta atgtatttca attttgttta
      121 cgttttgaac acgcttaacc caaccgtctt ttgctaacca accattttta gtatcggaca
      181 taggaggtat tctcgcagga gttttgccct gtgggtttgc cttaacttct tccattgcta
      241 attgttcctt taaattatta ggtattgtac gaccggttga tttttcaaca gattgtgtcc
      301 ctatttttaa tgatttgttt cccccagcca tttccccgtc tatagtctgc atatggcgaa
      361 cagcaggttt tttatagccg gtatttttaa cccaatccca cttggtcggg ttaaggttta
      421 cttttttacc gcctcaaacc gtagttgcgg cctctgctat ggcaagggcg gtttgggcag
      481 tagctgtaat gttcggatgg gcatcagccc attgtttggc agagttgata ccgtctttta
      541 ccgcaaaagc actgtcttgt aatgcggttg c
//
LOCUS       DAXIFS010000305          561 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.306, whole genome shotgun sequence.
ACCESSION   DAXIFS010000305 DAXIFS010000000
VERSION     DAXIFS010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.306"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..453)
                     /gene="lst"
                     /locus_tag="ACFOCA_002051"
     CDS             complement(<1..453)
                     /gene="lst"
                     /locus_tag="ACFOCA_002051"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HFC6988685.1"
                     /translation="MGLKKACLTVLCLIVFCFGIFYTFDRVNQGERNAVSLLKDKLFN
                     EEGEPVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAER
                     AYFFHLPYGLNKSFNFIPTMAELKVKSMLLPKVKRIYLASLEKVSIAAF"
BASE COUNT          168 a          153 c           95 g          145 t
ORIGIN      
        1 aaaggcggca atgctgactt tttccaaact tgccaaataa atccgcttga ctttcggcag
       61 cagcatcgac tttaccttca gctccgccat cgtcggaatg aaattaaacg atttgttcaa
      121 accgtagggc aggtggaaaa aatacgcccg ctccgcctta tcctttatct gattgaaata
      181 ataatcgtat ttttcattcc tgttttcaga catcagcacc acataaaacc gctcccccgg
      241 atgctgcgcc ataatccttt ccgccacctt catctgcaat atggtatagc agaaaatcag
      301 attgaccggt tccccctctt cattgaagag tttgtccttc agcagggaaa ccgcattcct
      361 ttccccctga tttacccggt caaatgtata aaatatcccg aaacaaaaaa caatcaaaca
      421 caacacggtc aaacaagcct ttttcaagcc catatcccta aaactccatt ccgacaaatt
      481 gaacatacgc cccgagtgtc ccgggacgga aaaatgcgga attttagcag atattccgac
      541 agttaccgaa tattatagtg g
//
LOCUS       DAXIFS010000306          561 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.307, whole genome shotgun sequence.
ACCESSION   DAXIFS010000306 DAXIFS010000000
VERSION     DAXIFS010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.307"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..359
                     /locus_tag="ACFOCA_002052"
     CDS             <1..359
                     /locus_tag="ACFOCA_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988686.1"
                     /translation="IGSITTATLMAMLPELRRLSHKRIAGLAGIAPHPRESGETKFKS
                     RCFGGRSAVRKALYMATVAATRFEPLIRDFHQRPLSEGKPYKVAVTACMRKLLTISNA
                     RMRDYFAENDTAENGI"
BASE COUNT          129 a          133 c          164 g          135 t
ORIGIN      
        1 gcatcggttc gataacgacg gctacgctga tggcgatgct gcccgaattg aggcggctgt
       61 cgcacaaacg gatagcgggt ttggccggca ttgccccgca cccgagggag agcggggaaa
      121 ccaaattcaa aagccgctgc tttggcggaa ggtctgcggt gcgtaaggca ctgtatatgg
      181 ctaccgtggc agcgacacgt tttgaaccgc ttattcggga tttccaccaa cgcccgctgt
      241 ccgagggtaa gccgtataag gttgccgtta cggcatgtat gcgcaaactg ctgacgatat
      301 cgaatgcccg gatgcgtgat tattttgccg aaaacgatac cgccgaaaac ggtatctaaa
      361 cggcttgatt tgagttttgg tatttttgcc cgacggggtg aaaaatacag ttgctacggc
      421 tcgatgaatc gtcagaaata cctgcatcgt cattcccgcg caggtgggaa tccagaccgg
      481 tcggtgcgga aacttatcag gtaaaacggt ttcttgagat ttttcgtctt ggattcccac
      541 tttcgtgtga atgacggaat g
//
LOCUS       DAXIFS010000307          540 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.308, whole genome shotgun sequence.
ACCESSION   DAXIFS010000307 DAXIFS010000000
VERSION     DAXIFS010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.308"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            32..394
                     /locus_tag="ACFOCA_002053"
     CDS             32..394
                     /locus_tag="ACFOCA_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HFC6988687.1"
                     /translation="MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSR
                     TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQESEQDRRERLLSLTEKGKAHAAPLTE
                     SAQEFSDKETFAKFPKIP"
     gene            425..>540
                     /locus_tag="ACFOCA_002054"
     CDS             425..>540
                     /locus_tag="ACFOCA_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6988688.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYL"
BASE COUNT          169 a          146 c          115 g          110 t
ORIGIN      
        1 cgcacaaatt tagtcaatat caagaccaat tatgaaccaa ctcgaccaac ttggcacccg
       61 tatcaacctg atttgcaatg tcttcgacaa atggatcggg cagcaggatc tgaattacaa
      121 cctctttgcc gtactttata ccctggcaac cgaaggcagc cgcacgcaaa agcatatcgg
      181 cgaaaagtgg agcctgccca aacagaccgt ttcaggcgta tgcaaaaccc ttgccggaca
      241 agggttgatt gaatggcagg aaagcgaaca ggaccggcgc gaacggttgc tgtcgctgac
      301 cgaaaaaggc aaagcccatg ccgcaccttt aacagaaagc gcgcaggaat tcagcgacaa
      361 agagaccttt gcaaaattcc ccaaaatccc ctaaattccc accaagacat ttaggagatt
      421 ttccatgagc accttctttc aacaaaccgc gcaagccatg attgctaaac acatcgaccg
      481 tttccctcta ttgaagttgg atcaagtgat tgattggcag ccgatcgaac aatacctgaa
//
LOCUS       DAXIFS010000308          526 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.309, whole genome shotgun sequence.
ACCESSION   DAXIFS010000308 DAXIFS010000000
VERSION     DAXIFS010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.309"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>526
                     /locus_tag="ACFOCA_002055"
     CDS             <1..>526
                     /locus_tag="ACFOCA_002055"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6988689.1"
                     /translation="IINKIKNENYILQIYGKSINKDYFELIKKYIKDNKLQNRILFKG
                     ESSEQEIYENTDILIMTSESEGFPYIFMEGMVYDIPIVVYDFKYGANDYSNYNENGCV
                     FKTGDISGMAKKIIELLNNPEKYKELVQYNHNRFLKEYAKDVVMAKYFTILPRSFNNV
                     SLSSAFSRKELDEFQ"
BASE COUNT          212 a           66 c           81 g          167 t
ORIGIN      
        1 atcatcaata aaattaaaaa tgaaaattac attttacaga tatatggcaa atctattaat
       61 aaagattact ttgaattaat taaaaaatat attaaagaca ataagttaca aaaccgtatc
      121 ttattcaaag gtgaatcttc cgagcaggaa atttatgaaa atacagatat cctgatcatg
      181 acatcagaaa gtgagggatt tccatatata tttatggaag gcatggtgta tgatattcca
      241 atcgttgtat atgattttaa atatggagcg aatgattaca gtaactataa tgaaaatggt
      301 tgtgttttta aaactggtga tatttctgga atggcaaaaa aaataattga gctattaaat
      361 aacccagaaa aatataaaga attagttcaa tataatcaca atcgcttctt aaaagaatat
      421 gcaaaagatg tggttatggc taaatatttc actattcttc cgcgcagctt taataacgta
      481 tcattatcgt ctgctttcag ccgaaaagaa ttggacgaat tccaaa
//
LOCUS       DAXIFS010000309          522 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.310, whole genome shotgun sequence.
ACCESSION   DAXIFS010000309 DAXIFS010000000
VERSION     DAXIFS010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.310"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(320..>522)
                     /locus_tag="ACFOCA_002056"
     CDS             complement(320..>522)
                     /locus_tag="ACFOCA_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988690.1"
                     /translation="FLFLIFCFWGMTGFEIAGIYRVKRKLCVTKIYPKSRQLFHCHSH
                     ESGNPGLSARKLIEKNGFFIVD"
BASE COUNT          157 a          118 c          103 g          144 t
ORIGIN      
        1 tttttttgaa tttcgggcaa cgcttgaatc ttcattccgc gcaggcggaa attatcggtg
       61 cggtacggca acttttttcg atatgaaaag accgtcattc ctgtaaaaac aaaaaatcaa
      121 aaacagaaaa ttgaaattcg tcattcccgc gcaggcggga atctaggacg taaaatctat
      181 agtggattaa caaaaaccag tacagcgttg ccttgactta gctcgaagag aacgattctc
      241 taaggtgctg aagcaccgag tgagtcggtt ccgcactatc cgtactgtct gcggcttcgt
      301 cgctttctcc tgatttttgt taatccacta taaagaaacc gtttttctcg ataagtttcc
      361 gtgccgacag acctggattc ccactttcgt gggaatgaca gtggaaaagt tgccgtgatt
      421 tcggataaat tttcgtaacg cataatttcc gttttacccg ataaatgccc gcaatctcaa
      481 atcccgtcat tccccaaaaa caaaaaatca aaaacagaaa ta
//
LOCUS       DAXIFS010000310          492 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.311, whole genome shotgun sequence.
ACCESSION   DAXIFS010000310 DAXIFS010000000
VERSION     DAXIFS010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.311"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>492
                     /locus_tag="ACFOCA_002057"
     CDS             <1..>492
                     /locus_tag="ACFOCA_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6988691.1"
                     /translation="RDHRGRPACPLLSMFKAILLGQWHSLSDPELEHSLITRIDFNLF
                     CRFDELIIPDYSTLCRYRNWLAQDDTLSELLKLINCQLTEKGLKIEKASAAVVDATII
                     QTAGSKQRQAIEVDEEGQISGQTTPSKDSDARWIKKNGLYKLGYKQHTRTDAEGYIEK
                     LHIT"
BASE COUNT          145 a          154 c          102 g           91 t
ORIGIN      
        1 agagaccacc gcggtcgtcc cgcctgtccc ctgttgtcca tgttcaaagc catcctgctc
       61 ggacaatggc acagcctctc cgatcccgaa ctcgaacaca gcctcatcac ccgcatcgat
      121 ttcaacctgt tttgccgttt cgacgaactg atcatccccg attacagtac cttatgccgc
      181 taccgcaact ggctggcgca agacgacacc ctgtccgaat tactcaaact gattaactgc
      241 caactgaccg aaaaaggcct aaaaatagag aaagcatccg ccgccgtcgt tgatgccacc
      301 attatccaga ccgccggcag caaacagcgt caggccatag aagttgacga agaaggacaa
      361 atcagcggtc aaaccacacc gagtaaggac agcgatgccc gttggataaa gaaaaacggc
      421 ctctacaaac tcggttacaa acaacatacc cgtaccgatg cagaaggcta tatcgagaaa
      481 ctgcacatta ct
//
LOCUS       DAXIFS010000311          492 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.312, whole genome shotgun sequence.
ACCESSION   DAXIFS010000311 DAXIFS010000000
VERSION     DAXIFS010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.312"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>492
                     /locus_tag="ACFOCA_002058"
     CDS             <1..>492
                     /locus_tag="ACFOCA_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6716 putative glycosyltransferase"
                     /protein_id="HFC6988692.1"
                     /translation="HQNDITVHEDKYSYAELAKNMKLPDNFKIERKRTQDALQEMGYC
                     LSFSSTMLFEAESCGIPIGVISDLGVDKKYANTHFKDSGVLVNLDTVDLDSPNTINPT
                     WAELYTNPDSLSSKEFNQLLEVTSTQPPSFDNYFIAVNDVQPVSMVLLRKFKKLIYHP
                     KQF"
BASE COUNT          169 a           80 c           80 g          163 t
ORIGIN      
        1 tccatcaaaa tgatatcaca gtacatgaag ataaatactc ttatgctgaa ttagcaaaaa
       61 atatgaaatt gcctgataat tttaaaatag agagaaaacg gacacaagat gccttacaag
      121 aaatgggata ttgtttatca ttctcttcaa caatgttatt tgaagctgaa agctgcggaa
      181 ttcctattgg tgtcattagt gatttagggg ttgacaagaa atatgccaat acacatttca
      241 aagatagtgg tgttttggtt aatttagata cggtagactt ggactctcca aataccatta
      301 atccaacttg ggctgaacta tatactaatc cagatagcct ctcttcaaaa gagtttaacc
      361 aattattaga ggttacttct actcaaccac ctagttttga taattatttt attgcagtta
      421 atgacgttca gcctgtatct atggttctgt tacgtaaatt taaaaagctt atatatcatc
      481 ctaagcaatt ct
//
LOCUS       DAXIFS010000312          489 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.313, whole genome shotgun sequence.
ACCESSION   DAXIFS010000312 DAXIFS010000000
VERSION     DAXIFS010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.313"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..203
                     /locus_tag="ACFOCA_002059"
     CDS             <1..203
                     /locus_tag="ACFOCA_002059"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988693.1"
                     /translation="MQLICADWTGIGNFMKTFEKTWSAQYRDMEISVRNFWNLERTGA
                     EVYINGRRVYHNEAEMASASLR"
BASE COUNT          162 a           70 c          123 g          134 t
ORIGIN      
        1 taatgcaatt gatatgtgcc gattggacag gtataggaaa ttttatgaaa accttcgaaa
       61 aaacatggtc tgcacaatat cgggatatgg aaatttcagt acggaatttt tggaatttgg
      121 agcggacagg ggcggaagtc tatatcaacg gaaggcgggt ttatcataac gaagccgaaa
      181 tggcgtctgc ttctttgcgt tagctaatgg gggaatacct ggaatttgaa gaaagcggta
      241 cgaaaattac cgttgaaatc ggcagcgcgt ggcattttaa tgaaactata agaaatatta
      301 atacacattt aagaggtacg aaacttccag gttctaactg gagagttcaa gataaggggc
      361 attttcatct ttggaaaaga taatagattc taaggtaagg gagactaatt ttaatcaggc
      421 atggcgtgtt atacgcgcca tgcaaataga taatatatcc gatgaacagg ttgtgattgt
      481 cagaatgtc
//
LOCUS       DAXIFS010000313          485 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.314, whole genome shotgun sequence.
ACCESSION   DAXIFS010000313 DAXIFS010000000
VERSION     DAXIFS010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.314"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..240)
                     /locus_tag="ACFOCA_002060"
     CDS             complement(<1..240)
                     /locus_tag="ACFOCA_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988694.1"
                     /translation="MLTKLKILLFLFLFVFVLAINLLFFFFSSDIESFGNYQFEYVYD
                     KGWPANYILVMKDGTEGNFDKIISGLVLEYYKEDDN"
BASE COUNT          177 a          102 c           45 g          161 t
ORIGIN      
        1 gttatcatcc tccttataat attctaaaac caatccggat attattttat caaaattccc
       61 ttcagttcca tctttcatga ctaaaatata attagcaggc caacctttat cgtaaacata
      121 ttcaaactga tagttcccga aactctcgat atccgaacta aaaaagaaga aaagcaaatt
      181 aatagccaat acaaaaacaa ataagaacaa aaatagcaaa attttcaact tagttaacaa
      241 tatttacctc tcctttaaat tcaatcctga aaggtacccc ttaccctggg ctaccaatta
      301 tagtttccat atttctaaat attgttttta cattactttt ttctcccccc aaaggaattc
      361 attttaaaat catgcttttc aggtgctaat cgatacttac cattaacatc tttaatcaca
      421 gatatatttc catgtatagc ccaacgtgaa aaatctgagt attatataca gttatacctt
      481 actga
//
LOCUS       DAXIFS010000314          484 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM843
            SAMN43218011-rid22928563.denovo.315, whole genome shotgun sequence.
ACCESSION   DAXIFS010000314 DAXIFS010000000
VERSION     DAXIFS010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43218011
            Sequence Read Archive: SRR30268269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330397.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330397.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/28/2024 05:45:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,062
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 41 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 18 of 105
            Pseudo Genes (multiple problems)  :: 21 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43218011-rid22928563.denovo.315"
                     /strain="cc11"
                     /isolate="EXNM843"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.557981 S 115.728286 E"
                     /collection_date="2018-09"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..189
                     /locus_tag="ACFOCA_002061"
     CDS             <1..189
                     /locus_tag="ACFOCA_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6988695.1"
                     /translation="KLAYDFCQGKFGQAGFSYRRHPNYFYLSSLIATFPEFELSKADR
                     DYLKGIINFDNYLLYELD"
     gene            233..>484
                     /locus_tag="ACFOCA_002062"
     CDS             233..>484
                     /locus_tag="ACFOCA_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone acetyltransferase"
                     /protein_id="HFC6988696.1"
                     /translation="MIELKLVDESSFQAVLDLKISEADERARFVAPNVRSLADAWLYR
                     ENEDVFPRAIYWDKQVVGFLLLEIDKDEAEYFIWRIMIGQ"
BASE COUNT          145 a           78 c          108 g          153 t
ORIGIN      
        1 aaacttgcct atgatttttg tcaagggaaa ttcggtcaag caggtttttc ttatcgtagg
       61 cacccgaatt atttttattt gtccagttta attgcgactt ttccagaatt tgagttgtct
      121 aaagcagacc gagattacct caaaggaatc ataaattttg ataactacct tttatatgag
      181 ttagattagt ctttaatcac ctcaaaaccc tatttattca aaaggagaaa aaatgattga
      241 gctgaaatta gtagatgaga gcagttttca ggcagtgctg gatttgaaaa tatctgaagc
      301 tgatgaacga gcacgttttg tggctccaaa tgtacgctct ttagctgacg catggctcta
      361 ccgggaaaat gaagatgtgt ttccgagggc aatctattgg gataagcaag tggttggctt
      421 tctcctgctg gaaatagaca aggatgaagc agaatacttt atctggcgga taatgattgg
      481 tcag
//
